BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12987
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K75|B Chain B, X-Ray Crystal Structure Of Reduced Xrcc1 Bound To Dna
Pol Beta Catalytic Domain
pdb|3K75|C Chain C, X-Ray Crystal Structure Of Reduced Xrcc1 Bound To Dna
Pol Beta Catalytic Domain
pdb|3LQC|A Chain A, X-Ray Crystal Structure Of Oxidized Xrcc1 Bound To Dna
Pol B Thumb Domain
Length = 189
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 1 MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
M I+ VVS SS+D H A+NLL ++ +KW+ GEK +LQL + QI+ +DI
Sbjct: 1 MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60
Query: 61 GNEFSAFVEVFVAKSSN 77
GN+ SAFVEV V S+
Sbjct: 61 GNDGSAFVEVLVGSSAG 77
>pdb|3K77|A Chain A, X-Ray Crystal Structure Of Xrcc1
pdb|3K77|B Chain B, X-Ray Crystal Structure Of Xrcc1
pdb|3K77|C Chain C, X-Ray Crystal Structure Of Xrcc1
pdb|3K77|D Chain D, X-Ray Crystal Structure Of Xrcc1
pdb|3K77|E Chain E, X-Ray Crystal Structure Of Xrcc1
pdb|3K77|F Chain F, X-Ray Crystal Structure Of Xrcc1
pdb|3K77|G Chain G, X-Ray Crystal Structure Of Xrcc1
pdb|3K77|H Chain H, X-Ray Crystal Structure Of Xrcc1
Length = 161
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 1 MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
M I+ VVS SS+D H A+NLL ++ +KW+ GEK +LQL + QI+ +DI
Sbjct: 1 MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60
Query: 61 GNEFSAFVEVFVAKSSN 77
GN+ SAFVEV V S+
Sbjct: 61 GNDGSAFVEVLVGSSAG 77
>pdb|1XNA|A Chain A, Nmr Solution Structure Of The Single-Strand Break Repair
Protein Xrcc1-N-Terminal Domain
pdb|1XNT|A Chain A, Nmr Solution Structure Of The Single-Strand Break Repair
Protein Xrcc1-N-Terminal Domain
Length = 183
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%)
Query: 4 IKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNE 63
I+ VVS SS+D H A+NLL ++ +KW+ GEK +LQL + QI+ +DIGN+
Sbjct: 4 IRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDIGND 63
Query: 64 FSAFVEVFVAKSSN 77
SAFVEV V S+
Sbjct: 64 GSAFVEVLVGSSAG 77
>pdb|3SSZ|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Rhodobacteraceae Bacterium
Length = 413
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 35 CKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVF 71
CK + EK+AV++LQ + ++ GI + +A E F
Sbjct: 297 CKDLIEKKAVSVLQYDTN-RVGGITAAQKINAIAEAF 332
>pdb|1N5D|A Chain A, Crystal Structure Of Porcine Testicular Carbonyl Reductase
20beta-Hydroxysteroid Dehydrogenase
Length = 288
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 7 ARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGI 58
RVV+ SS + V +A N +PE +K+K +++ E++ V ++ + NG+
Sbjct: 132 GRVVNVSSTEGV-RALNECSPELQQKFKSETITEEELVGLMNKFVEDTKNGV 182
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 26 NPESTKKWKCKSMGEKQAVAILQLSSQVQI 55
N E KW CK +G K V L ++++ I
Sbjct: 467 NTERNWKWSCKGLGRKILVPALMVTAEKDI 496
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 26 NPESTKKWKCKSMGEKQAVAILQLSSQ 52
N E KW CKS+G K + L ++++
Sbjct: 468 NMERNWKWACKSLGRKILIPALMVTAE 494
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 26 NPESTKKWKCKSMGEKQAVAILQLSSQ 52
N E KW CKS+G K + L ++++
Sbjct: 264 NMERNWKWACKSLGRKILIPALMVTAE 290
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 26 NPESTKKWKCKSMGEKQAVAILQLSSQ 52
N E KW CKS+G K + L ++++
Sbjct: 249 NMERNWKWACKSLGRKILIPALMVTAE 275
>pdb|4DLQ|A Chain A, Crystal Structure Of The Gain And Hormr Domains Of Cirl
1LATROPHILIN 1 (Cl1)
Length = 381
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 18 VHKADNLLNPESTKKWKCKSMGEKQAVAILQL 49
V DNLL PE+ + WK + E+ A + L
Sbjct: 165 VETVDNLLRPEALESWKDMNATEQVHTATMLL 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,259,559
Number of Sequences: 62578
Number of extensions: 64818
Number of successful extensions: 113
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 10
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)