BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12987
         (82 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9ESZ0|XRCC1_RAT DNA repair protein XRCC1 OS=Rattus norvegicus GN=Xrcc1 PE=2 SV=2
          Length = 631

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 48/77 (62%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  I    VVS SS+D  H+A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct: 1  MPEISLRHVVSCSSQDSTHRAENLLKADTYRKWRSAKAGEKTISVVLQLEKEEQIHSVDI 60

Query: 61 GNEFSAFVEVFVAKSSN 77
          GN+ SAFVEV V  S+ 
Sbjct: 61 GNDGSAFVEVLVGSSAG 77


>sp|P18887|XRCC1_HUMAN DNA repair protein XRCC1 OS=Homo sapiens GN=XRCC1 PE=1 SV=2
          Length = 633

 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 48/77 (62%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  I+   VVS SS+D  H A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct: 1  MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60

Query: 61 GNEFSAFVEVFVAKSSN 77
          GN+ SAFVEV V  S+ 
Sbjct: 61 GNDGSAFVEVLVGSSAG 77


>sp|Q60596|XRCC1_MOUSE DNA repair protein XRCC1 OS=Mus musculus GN=Xrcc1 PE=1 SV=2
          Length = 631

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 47/77 (61%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  I    VVS SS+D  H A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct: 1  MPEISLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60

Query: 61 GNEFSAFVEVFVAKSSN 77
          GN+ SAFVEV V  S+ 
Sbjct: 61 GNDGSAFVEVLVGSSAG 77


>sp|O54935|XRCC1_CRIGR DNA repair protein XRCC1 OS=Cricetulus griseus GN=XRCC1 PE=2 SV=1
          Length = 633

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 49/76 (64%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  I    VVS SS+D  H A+NLL  ++ +KW+  + GEK    +LQL  + QI+ IDI
Sbjct: 1  MPEISLRHVVSGSSQDSTHCAENLLKADTYRKWRAATAGEKTISVVLQLEKEEQIHSIDI 60

Query: 61 GNEFSAFVEVFVAKSS 76
          GN+ SAFVEV V +S+
Sbjct: 61 GNDGSAFVEVLVTRSA 76


>sp|Q6ZNB5|TRC2L_HUMAN Putative short transient receptor potential channel 2-like
          protein OS=Homo sapiens PE=5 SV=1
          Length = 142

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKK-W-KCKSMGEKQAVAILQLSSQVQINGI 58
          MAP+K + VVS+SS+DP +  +NLLNP+S ++ W  C      Q    LQL   V    I
Sbjct: 1  MAPVKISHVVSFSSQDPKYPVENLLNPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYI 60

Query: 59 DIGNEFSAFVEVFVAKSSNPDD 80
          D+GN   AF+++ V  SS P D
Sbjct: 61 DVGNCGCAFLQIDVGHSSWPLD 82


>sp|O61069|KAD_TRYBR Adenylate kinase OS=Trypanosoma brucei rhodesiense PE=3 SV=1
          Length = 209

 Score = 30.0 bits (66), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 29  STKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAKSSN-PD 79
           S K+ +CK++ ++  V ++  S QV   G++ G+E S     +V++    PD
Sbjct: 60  SGKRTQCKNIADRLGVVLIS-SGQVLTRGVESGSETSQLAHSYVSRGERVPD 110


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.127    0.358 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,753,813
Number of Sequences: 539616
Number of extensions: 795586
Number of successful extensions: 1449
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1443
Number of HSP's gapped (non-prelim): 6
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)