Query psy12987
Match_columns 82
No_of_seqs 70 out of 72
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 16:13:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01834 XRCC1_N: XRCC1 N term 100.0 3.4E-47 7.3E-52 270.4 3.2 78 1-78 1-78 (153)
2 KOG3226|consensus 100.0 9.4E-36 2E-40 237.6 1.8 82 1-82 1-83 (508)
3 cd08366 APC10 APC10 subunit of 97.4 0.00046 1E-08 48.2 5.2 68 7-76 6-80 (139)
4 PF00754 F5_F8_type_C: F5/8 ty 97.1 0.0026 5.6E-08 39.7 6.0 55 10-65 2-60 (129)
5 cd00057 FA58C Substituted upda 96.8 0.0036 7.8E-08 40.6 5.0 54 9-64 13-67 (143)
6 PF03561 Allantoicase: Allanto 96.8 0.0047 1E-07 43.9 5.9 53 8-61 3-70 (152)
7 cd08666 APC10-HECTD3 APC10-lik 96.6 0.005 1.1E-07 43.3 5.2 63 10-74 10-79 (134)
8 PF06588 Muskelin_N: Muskelin 95.7 0.026 5.5E-07 42.2 5.1 56 8-64 8-66 (199)
9 PF03256 APC10: Anaphase-promo 95.7 0.012 2.6E-07 43.1 3.3 68 7-76 33-108 (193)
10 cd08159 APC10-like APC10-like 95.7 0.032 7E-07 38.8 5.3 64 8-75 5-75 (129)
11 KOG3437|consensus 95.2 0.009 2E-07 44.2 1.2 48 6-58 27-74 (184)
12 cd08667 APC10-ZZEF1 APC10/DOC1 95.0 0.11 2.4E-06 36.3 6.2 62 10-75 7-75 (131)
13 cd08365 APC10-like1 APC10-like 95.0 0.055 1.2E-06 37.8 4.6 62 10-75 8-76 (131)
14 cd08665 APC10-CUL7 APC10-like 93.9 0.34 7.3E-06 34.0 6.6 57 17-75 12-75 (131)
15 cd08664 APC10-HERC2 APC10-like 93.2 0.4 8.6E-06 34.5 6.2 61 10-75 31-98 (152)
16 TIGR02961 allantoicase allanto 92.7 0.24 5.2E-06 39.3 4.9 52 8-60 183-239 (322)
17 PRK13257 allantoicase; Provisi 92.1 0.34 7.3E-06 38.7 5.0 52 8-60 194-250 (336)
18 PRK13797 putative bifunctional 90.6 0.5 1.1E-05 39.5 4.8 63 8-71 195-269 (516)
19 TIGR02961 allantoicase allanto 88.5 1 2.2E-05 35.8 4.8 64 8-72 13-98 (322)
20 PRK13797 putative bifunctional 86.3 1.4 3.1E-05 36.9 4.8 52 8-60 21-88 (516)
21 PRK13257 allantoicase; Provisi 84.3 2.1 4.5E-05 34.3 4.6 52 8-60 28-94 (336)
22 PF00055 Laminin_N: Laminin N- 83.5 2.4 5.2E-05 31.7 4.5 52 10-61 42-104 (237)
23 PF07738 Sad1_UNC: Sad1 / UNC- 81.0 1.4 3.1E-05 29.3 2.3 55 18-75 5-73 (135)
24 smart00136 LamNT Laminin N-ter 78.5 3.7 8E-05 30.9 4.0 43 18-60 58-105 (238)
25 COG4266 Alc Allantoicase [Nucl 74.5 7.3 0.00016 31.1 4.8 52 8-60 194-250 (334)
26 PF06201 PITH: PITH domain; I 74.2 8.1 0.00017 27.1 4.5 68 3-72 5-79 (152)
27 KOG2437|consensus 72.4 5.9 0.00013 34.3 4.1 57 9-66 12-71 (723)
28 KOG2931|consensus 55.7 7 0.00015 31.4 1.4 28 41-68 32-64 (326)
29 smart00231 FA58C Coagulation f 54.8 42 0.00092 21.9 4.9 49 10-61 14-63 (139)
30 PF07461 NADase_NGA: Nicotine 53.0 4.5 9.8E-05 33.3 0.0 44 21-64 69-113 (446)
31 PF14652 DUF4457: Domain of un 52.2 31 0.00067 26.9 4.5 50 18-67 53-107 (329)
32 COG5156 DOC1 Anaphase-promotin 50.3 10 0.00022 28.2 1.4 49 10-60 32-80 (189)
33 PF14652 DUF4457: Domain of un 48.8 34 0.00073 26.7 4.2 47 18-64 244-300 (329)
34 smart00607 FTP eel-Fucolectin 44.6 73 0.0016 22.3 5.1 71 6-76 6-91 (151)
35 KOG4145|consensus 43.3 14 0.0003 29.6 1.3 42 19-60 216-263 (340)
36 KOG2687|consensus 42.7 52 0.0011 27.2 4.6 60 18-81 280-341 (414)
37 PF00415 RCC1: Regulator of ch 40.3 38 0.00082 18.2 2.5 25 44-68 27-51 (51)
38 COG4266 Alc Allantoicase [Nucl 38.1 53 0.0012 26.4 3.9 57 9-66 29-106 (334)
39 KOG0114|consensus 36.3 34 0.00075 24.0 2.3 21 49-69 39-63 (124)
40 PF11663 Toxin_YhaV: Toxin wit 35.3 46 0.001 23.8 2.9 48 14-63 51-102 (140)
41 PF05694 SBP56: 56kDa selenium 33.3 68 0.0015 26.9 3.9 32 44-75 224-255 (461)
42 PRK14681 hypothetical protein; 33.3 55 0.0012 23.4 3.0 32 31-76 67-98 (158)
43 PF13540 RCC1_2: Regulator of 29.6 50 0.0011 16.8 1.8 14 55-68 1-14 (30)
44 PF15149 CATSPERB: Cation chan 29.5 89 0.0019 26.8 4.1 40 29-71 141-185 (540)
45 COG1558 FlgC Flagellar basal b 28.5 41 0.0009 24.0 1.7 20 4-23 65-89 (137)
46 PF15453 Pilt: Protein incorpo 28.0 30 0.00066 27.7 1.1 13 7-19 62-74 (319)
47 COG3592 Uncharacterized conser 25.9 51 0.0011 21.3 1.6 45 22-77 1-46 (74)
48 COG5328 Uncharacterized protei 24.1 16 0.00034 26.4 -1.1 55 7-66 64-129 (160)
49 PRK10431 N-acetylmuramoyl-l-al 23.6 4.1E+02 0.0089 21.9 6.8 43 30-72 82-125 (445)
50 PRK14673 hypothetical protein; 22.7 65 0.0014 22.5 1.8 16 61-76 66-81 (137)
51 PF03096 Ndr: Ndr family; Int 22.5 35 0.00077 26.6 0.5 27 41-67 9-40 (283)
52 PF04848 Pox_A22: Poxvirus A22 22.4 72 0.0016 22.5 2.0 16 54-69 2-19 (143)
53 PRK14687 hypothetical protein; 21.4 1.2E+02 0.0026 22.3 3.0 33 31-76 54-89 (173)
54 PRK03719 ecotin; Provisional 21.4 1.3E+02 0.0029 21.9 3.3 32 37-76 42-73 (166)
55 KOG3268|consensus 20.8 31 0.00066 26.3 -0.1 28 49-76 80-107 (234)
56 PF13595 DUF4138: Domain of un 20.2 1.1E+02 0.0023 23.2 2.6 21 40-64 7-27 (246)
57 KOG2912|consensus 20.1 47 0.001 27.4 0.8 20 48-67 97-116 (419)
No 1
>PF01834 XRCC1_N: XRCC1 N terminal domain; InterPro: IPR002706 DNA-repair protein Xrcc1 functions in the repair of single-strand DNA breaks in mammalian cells and forms a repair complex with beta-Pol, ligase III and PARP []. The NMR solution structure of the Xrcc1 N-terminal domain (Xrcc1 NTD) shows that the structural core is a beta-sandwich with beta-strands connected by loops, three helices and two short two-stranded beta-sheets at each connection side. The Xrcc1 NTD specifically binds single-strand break DNA (gapped and nicked) and a gapped DNA-beta-Pol complex [].; GO: 0003684 damaged DNA binding, 0000012 single strand break repair, 0005634 nucleus; PDB: 3K77_E 3K75_C 3LQC_A 1XNA_A 1XNT_A.
Probab=100.00 E-value=3.4e-47 Score=270.42 Aligned_cols=78 Identities=58% Similarity=0.838 Sum_probs=69.2
Q ss_pred CCcceeceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCCeEEEEEEeeccCCC
Q psy12987 1 MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAKSSNP 78 (82)
Q Consensus 1 Mp~i~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gSAfiEvlVg~s~~~ 78 (82)
||+|||+|||||||||+.|||||||++|+||+|+|+++||++++|||||+||++|++|||||+||||||||||||+|+
T Consensus 1 Mp~ik~k~VvS~SSed~~~~A~NLL~~d~~r~W~~~~~gek~~~V~lQl~~~~~I~~IDIGN~gSAfiEVlVg~S~~~ 78 (153)
T PF01834_consen 1 MPEIKLKHVVSFSSEDPVHPAENLLKSDTYRKWKCAKAGEKQASVELQLEKASQITSIDIGNEGSAFIEVLVGRSSWS 78 (153)
T ss_dssp --BCGEEEEEEESSS-SSSHGGGGSCGGGCHHEEHSSTT-SEEEEEEEEEEEE--SEEEEEEEB-SEEEEEEE-STTS
T ss_pred CCcceeeEEEEEeCCCCCCchhhccCcccCCcccccCCCCceEEEEEEecCceEEEEEeccCCCeEEEEEEeeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>KOG3226|consensus
Probab=100.00 E-value=9.4e-36 Score=237.65 Aligned_cols=82 Identities=46% Similarity=0.727 Sum_probs=80.5
Q ss_pred CCcceeceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCCeEEEEEEeeccCC-CC
Q psy12987 1 MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAKSSN-PD 79 (82)
Q Consensus 1 Mp~i~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gSAfiEvlVg~s~~-~~ 79 (82)
||++.|+||++|||||.+|+|+|||+.++|||||++.+|||+++|+|||++|++|++|||||+|+|||||||||+++ .|
T Consensus 1 MP~~~~k~V~~~SSeDa~H~A~NLLK~~a~kKWRt~~~GEKs~~VVLe~E~~qQI~~iDIGNe~aAFiEVLV~~t~~~~~ 80 (508)
T KOG3226|consen 1 MPIALFKSVREVSSEDAVHVAANLLKENAGKKWRTKAPGEKSAYVVLEFEEPQQITGIDIGNEHAAFIEVLVSRTGCQAD 80 (508)
T ss_pred CchhhhhhhhhccccchHHHHHHHHhhhhcchhhhcCCCCceeEEEEEecccceeeeeeccCCcceeeeeeeccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CCC
Q psy12987 80 DYK 82 (82)
Q Consensus 80 ~f~ 82 (82)
||.
T Consensus 81 D~~ 83 (508)
T KOG3226|consen 81 DFR 83 (508)
T ss_pred hHH
Confidence 884
No 3
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=97.36 E-value=0.00046 Score=48.21 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=57.2
Q ss_pred ceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeC-------CCCeEEEEEEeeccC
Q psy12987 7 ARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIG-------NEFSAFVEVFVAKSS 76 (82)
Q Consensus 7 ~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIG-------N~gSAfiEvlVg~s~ 76 (82)
..+.++||.-+.|.++||++.++..=|+. +|.+.-+|.|||.|...|+.+-|= +|-=.-|.|.+|.+.
T Consensus 6 ~a~w~vSS~k~g~gv~~L~D~~~~TyWQS--Dg~qPH~I~i~f~k~~~i~~l~i~vd~~~DeSYtP~~I~v~~G~~~ 80 (139)
T cd08366 6 LAVWSLSSAKPGNGVDQLRDDSLDTYWQS--DGPQPHLINIQFSKKTDISAVALYLDYKLDESYTPSKISIRAGTSP 80 (139)
T ss_pred CEEEEEEeCCCCCCHHHhcCCCCCccCCC--CCCCCEEEEEEecCCcEEEEEEEEEccCCCCCCCCEEEEEEEECCc
Confidence 45789999999999999999888888994 678889999999999999988543 344578889988874
No 4
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=97.08 E-value=0.0026 Score=39.66 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=41.3
Q ss_pred EEeecCCCC-C---ccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCCe
Q psy12987 10 VSYSSEDPV-H---KADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFS 65 (82)
Q Consensus 10 vs~SSEd~~-h---paeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gS 65 (82)
++.||+-.. + +++|+++.+....|.+.. +....++.+.|.++..|.+|.|-....
T Consensus 2 itaSS~~~~~~~~~~~~~~~Dg~~~t~W~~~~-~~~~~~i~idl~~~~~i~~i~i~~~~~ 60 (129)
T PF00754_consen 2 ITASSSYSGYYSAEPASNAFDGDPSTAWCSNW-DDSPQWIQIDLGKPYTISGISIQFRND 60 (129)
T ss_dssp EEESSCSTTSSSGGGGGGGGSSSTTSSEEESS-SSSTEEEEEEEEEEEEEEEEEEEEESS
T ss_pred EEEEEEeCCCCCcchHHheEeCCCCCEEECCC-CCCCceEEEEeeeeEecceeeeccccc
Confidence 456666444 3 599999999778999873 445567777799999999999964433
No 5
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=96.79 E-value=0.0036 Score=40.61 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=43.1
Q ss_pred EEEeecCCC-CCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCC
Q psy12987 9 VVSYSSEDP-VHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEF 64 (82)
Q Consensus 9 Vvs~SSEd~-~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~g 64 (82)
=|+.||.+. .|+++|+ +.+....|.+.. ++..-++.+.|.++..|..|-|=..+
T Consensus 13 ~vtaSS~~~~~~~~~~~-dg~~~t~W~~~~-~~~~~wi~vDL~~~~~i~~v~i~~~~ 67 (143)
T cd00057 13 QITASSSYSSGWEASRA-RLNSDNAWTPAV-NDPPQWLQVDLGKTRRVTGIQTQGRK 67 (143)
T ss_pred CEEEEecCCCCCCcCee-ecCCCCcccCCC-CCCCceEEEECCCCEEEEEEEEccCC
Confidence 357788877 8999999 888777898763 34556888889999999999887554
No 6
>PF03561 Allantoicase: Allantoicase repeat; InterPro: IPR015908 Allantoicase (also known as allantoate amidinohydrolase) is involved in purine degradation, facilitating the utilization of purines as secondary nitrogen sources under nitrogen-limiting conditions. While purine degradation converges to uric acid in all vertebrates, its further degradation varies from species to species. Uric acid is excreted by birds, reptiles, and some mammals that do not have a functional uricase gene, whereas other mammals produce allantoin. Amphibians and microorganisms produce ammonia and carbon dioxide using the uricolytic pathway. Allantoicase performs the second step in this pathway catalyzing the conversion of allantoate into ureidoglycolate and urea. allantoate + H(2)0 = (S)-ureidoglycolate + urea The structure of allantoicase is best described as being composed of two repeats (the allantoicase repeats: AR1 and AR2), which are connected by a flexible linker. The crystal structure, resolved at 2.4A resolution, reveals that AR1 has a very similar fold to AR2, both repeats being jelly-roll motifs, composed of four-stranded and five-stranded antiparallel beta-sheets []. Each jelly-roll motif has two conserved surface patches that probably constitute the active site []. The mammalian proteins matched by this entry are thought to be non-functional as mammals do not appear to possess allantoicase activity [].; GO: 0004037 allantoicase activity; PDB: 1O59_A 1SG3_A.
Probab=96.78 E-value=0.0047 Score=43.95 Aligned_cols=53 Identities=34% Similarity=0.483 Sum_probs=36.1
Q ss_pred eEEEeecCCCCCccccccCCCCCC--------------CeeecCC-CceeEEEEEecCCcceeeEEEeC
Q psy12987 8 RVVSYSSEDPVHKADNLLNPESTK--------------KWKCKSM-GEKQAVAILQLSSQVQINGIDIG 61 (82)
Q Consensus 8 ~Vvs~SSEd~~hpaeNLL~~~~~r--------------~W~~~~~-Ge~~~~V~lql~~~~~I~~IDIG 61 (82)
.|+.||.+.=. +++|||+++... +|.+++- ....=+++|+|-.|-.|.+|+|=
T Consensus 3 ~vv~~SD~~f~-~~~nll~p~~~~~~~~~f~~~g~~~DGWETrRrr~~g~DW~IikLg~~G~I~~i~ID 70 (152)
T PF03561_consen 3 RVVACSDEFFA-PAENLLKPGRPVFKPGKFDENGKMMDGWETRRRRDPGHDWAIIKLGAPGVIRGIEID 70 (152)
T ss_dssp EEEEES--SCC--GGGCC-SSS-S----------SGGCSEE--SS-STT-EEEEEE-SSSCEEEEEEEE
T ss_pred EEEEEcccccc-cHHHhcCCCCCcccccccccccccccceeeccccCCCCCEEEEECCCCCEEEEEEEe
Confidence 68999998775 789999987766 8888743 23458999999999999999983
No 7
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=96.64 E-value=0.005 Score=43.30 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=51.5
Q ss_pred EEeecCCCCCccccccCCCCCCCeeecCCCce-eEEEEEecCCcceeeEEEeCC------CCeEEEEEEeec
Q psy12987 10 VSYSSEDPVHKADNLLNPESTKKWKCKSMGEK-QAVAILQLSSQVQINGIDIGN------EFSAFVEVFVAK 74 (82)
Q Consensus 10 vs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~-~~~V~lql~~~~~I~~IDIGN------~gSAfiEvlVg~ 74 (82)
+++||.-+.|.++||++.+...=|+ ++|.+ ..+|-|||.+-..|+.+-|-. |-=.-|.|.+|.
T Consensus 10 isvSS~k~g~gv~~L~D~~~~tyWQ--SdG~qgpH~I~l~f~~~v~i~~l~i~v~~~DeSYtP~~I~V~~G~ 79 (134)
T cd08666 10 IEVSSYTDDFNVSCLTDGDPDTYWE--SDGSQGQHWIRLHMKKGTIIKKLLLTVDATDDNYMPKRVAVYGGE 79 (134)
T ss_pred EEEEcCCCCCCHHHhccCCCCccEe--cCCCCCCeEEEEEECCCcEeeEEEEEecCCCCCcCCcEEEEEecC
Confidence 5789999999999999988878899 46777 799999999999998887753 333556777776
No 8
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=95.72 E-value=0.026 Score=42.23 Aligned_cols=56 Identities=23% Similarity=0.333 Sum_probs=45.8
Q ss_pred eEEEeecCCCCCccccccCC---CCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCC
Q psy12987 8 RVVSYSSEDPVHKADNLLNP---ESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEF 64 (82)
Q Consensus 8 ~Vvs~SSEd~~hpaeNLL~~---~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~g 64 (82)
.|.+|||=.+.|-++|.|.. |...+|-+... ...=+++|+|++|+.++.|-.|-+.
T Consensus 8 ~I~~~Ssys~~y~P~NIlvd~P~dqsSRWss~~~-~~~QyiiLkL~~paiV~sItFGKy~ 66 (199)
T PF06588_consen 8 EIHSCSSYSSNYHPENILVDKPNDQSSRWSSSSN-SPPQYIILKLESPAIVKSITFGKYE 66 (199)
T ss_pred EEEEecccCCccChhheeecCCCCccccccCCCC-CCCcEEEEEcCCCeEEEEEeccccc
Confidence 58899999999999999963 44457998843 3445899999999999999999764
No 9
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.
Probab=95.71 E-value=0.012 Score=43.14 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=49.3
Q ss_pred ceEEEeecCCCCCcccccc-CCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeC-------CCCeEEEEEEeeccC
Q psy12987 7 ARVVSYSSEDPVHKADNLL-NPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIG-------NEFSAFVEVFVAKSS 76 (82)
Q Consensus 7 ~~Vvs~SSEd~~hpaeNLL-~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIG-------N~gSAfiEvlVg~s~ 76 (82)
..+.+.||--+.|+++|+| +.++..=|+. +|.+..+|.|+|.|-+.|+.|-|- +|-=.-|.|.+|.+.
T Consensus 33 ~a~w~vSS~K~g~gv~~~LrD~~~~TyWQS--DG~qpH~I~i~f~k~v~I~~l~iyvd~~~DeSYtPs~I~V~aG~~~ 108 (193)
T PF03256_consen 33 LAVWSVSSCKPGFGVAELLRDGSTETYWQS--DGSQPHWITIQFHKRVIISSLSIYVDYKQDESYTPSKISVRAGNSP 108 (193)
T ss_dssp GSEEEES--BTTBSCHGHCHSS-TT--EE----SSSSEEEEEEEEEEEEE-EEEEEEEHHHHGGGSEEEEEEEEESST
T ss_pred ceEEEEecCCCCCCchheeeCCChhHhhcc--CCCCCEEEEEEEcCCcEEEEEEEEEccCcCCCCCceEEEEEEeCCc
Confidence 3477899999999999999 7777778994 788889999999999999988763 244477888888773
No 10
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=95.71 E-value=0.032 Score=38.76 Aligned_cols=64 Identities=20% Similarity=0.220 Sum_probs=50.5
Q ss_pred eEEEeecCCCCCccccccCCCCCCCeeecCCCcee-EEEEEecCCcceeeEEEeC------CCCeEEEEEEeecc
Q psy12987 8 RVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQ-AVAILQLSSQVQINGIDIG------NEFSAFVEVFVAKS 75 (82)
Q Consensus 8 ~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~-~~V~lql~~~~~I~~IDIG------N~gSAfiEvlVg~s 75 (82)
.+.++||--+ .++||++.+...=|+ ++|.+- ..+.|+|.|...|+.+-|- +|--.-|.|.+|.+
T Consensus 5 a~w~vSS~k~--gv~~L~D~~~~tyWQ--SdG~qphh~i~l~f~k~v~i~~l~i~~~~~DeSYtP~~I~V~~G~~ 75 (129)
T cd08159 5 ASIEVSSNPL--PVSRLTDGNYDTYWQ--SDGSQGSHWIRLFMKKDVLIRVLAIFVDMADSSYMPSLVVVYGGHS 75 (129)
T ss_pred EEEEEecCcc--cHHHhcCCCCCccCC--CCCCCCCEEEEEEEcCCcEEEEEEEEecCCCCCcCCcEEEEEecCC
Confidence 4678899877 999999988888899 456554 5688999999999988773 45556777777776
No 11
>KOG3437|consensus
Probab=95.20 E-value=0.009 Score=44.21 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=36.7
Q ss_pred eceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEE
Q psy12987 6 FARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGI 58 (82)
Q Consensus 6 ~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~I 58 (82)
...+.++|| .||++||++.+...-|+ .+|.+-..+.+||.|-..|.++
T Consensus 27 ~~A~ws~sS---g~pvd~l~Ddn~etyWq--SdG~~PH~i~I~F~K~~~I~~v 74 (184)
T KOG3437|consen 27 LLALWSLSS---GFPVDNLRDDNPETYWQ--SDGSQPHLINIQFHKRVDIQYV 74 (184)
T ss_pred HHhhccccc---CCChHHhhcCChhHhee--cCCCCCeEEEEEEEeEEEEEEE
Confidence 344556666 99999999877666899 5687888899999886666654
No 12
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=95.01 E-value=0.11 Score=36.27 Aligned_cols=62 Identities=23% Similarity=0.372 Sum_probs=47.5
Q ss_pred EEeecCCCCCccccccCCCCCCCeeecCCCc-eeEEEEEecCCcceeeEEEeC------CCCeEEEEEEeecc
Q psy12987 10 VSYSSEDPVHKADNLLNPESTKKWKCKSMGE-KQAVAILQLSSQVQINGIDIG------NEFSAFVEVFVAKS 75 (82)
Q Consensus 10 vs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge-~~~~V~lql~~~~~I~~IDIG------N~gSAfiEvlVg~s 75 (82)
+++||--+ .+++|++.+...=|+ ++|. +..+|-|||.+-..|..|-|- +|--.-|.|.+|.+
T Consensus 7 ~~vSS~k~--gv~~L~D~~~~TYWQ--SDG~q~pH~I~i~f~~~v~i~~l~i~v~~~DeSYtPs~I~I~~G~~ 75 (131)
T cd08667 7 IEVSSNSA--DIDRMTDGETSTYWQ--SDGSARSHWIRLKMKPDVVLRHLSIAVAATDQSYMPQQVTVSVGRS 75 (131)
T ss_pred EEEEcChh--hhHHhhcCCCCccCc--cCCCCCCeEEEEEecCCeEEEEEEEEEcCCCCCcCCcEEEEEecCC
Confidence 45666655 799999988778899 5676 478999999999999985442 45556788888766
No 13
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination. This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te
Probab=95.00 E-value=0.055 Score=37.81 Aligned_cols=62 Identities=19% Similarity=0.294 Sum_probs=49.2
Q ss_pred EEeecCCCCCccccccCCCCCCCeeecCCCce-eEEEEEecCCcceeeEEEeC------CCCeEEEEEEeecc
Q psy12987 10 VSYSSEDPVHKADNLLNPESTKKWKCKSMGEK-QAVAILQLSSQVQINGIDIG------NEFSAFVEVFVAKS 75 (82)
Q Consensus 10 vs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~-~~~V~lql~~~~~I~~IDIG------N~gSAfiEvlVg~s 75 (82)
+++||--+ -+++|++.+...=|+ ++|.+ ..+|-|||.+-..|..|-|- +|--.-|.|.+|.+
T Consensus 8 i~vSS~k~--gv~~L~D~~~~tyWQ--SDG~q~pH~I~i~f~k~v~i~~l~l~vd~~DeSYtP~~I~V~~G~~ 76 (131)
T cd08365 8 IEVSSNPA--DASRLTDGNTSTYWQ--SDGSQGSHWIRLKMKPDVLVRHLSLAVDATDSSYMPQRVVVAGGRS 76 (131)
T ss_pred EEEEcCch--hHHHhhcCCCCceEc--cCCCCCCEEEEEEEcCCcEEEEEEEEecCCCCCCCCcEEEEEecCC
Confidence 56777755 899999988888899 56777 68999999999999988664 45556777777776
No 14
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=93.91 E-value=0.34 Score=33.96 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=45.5
Q ss_pred CCCccccccCCCCCCCeeecCCCc-eeEEEEEecCCcceeeEEEeC------CCCeEEEEEEeecc
Q psy12987 17 PVHKADNLLNPESTKKWKCKSMGE-KQAVAILQLSSQVQINGIDIG------NEFSAFVEVFVAKS 75 (82)
Q Consensus 17 ~~hpaeNLL~~~~~r~W~~~~~Ge-~~~~V~lql~~~~~I~~IDIG------N~gSAfiEvlVg~s 75 (82)
..|-|++|++.+...=|+ ++|. +..+|-|||.|-..|+.|-|- +|-=+-|.|.+|.+
T Consensus 12 n~~~~~~L~D~~~~tyWQ--SdG~q~pH~I~i~f~k~v~I~~l~i~v~~~DeSYtPs~I~V~~G~~ 75 (131)
T cd08665 12 NPHRANKLTDGNPKTYWE--SNGSTGSHYINIHMHRGVVIRQLYMLVASEDSSYMPARVVVLGGDS 75 (131)
T ss_pred CcccHHHhhcCCCCceEc--cCCCCCCeEEEEEECCCcEEEEEEEEecCCCCCcCCeeEEEEecCC
Confidence 456799999988878899 5576 579999999999999988764 44456778888776
No 15
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2). This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo
Probab=93.22 E-value=0.4 Score=34.48 Aligned_cols=61 Identities=26% Similarity=0.351 Sum_probs=48.5
Q ss_pred EEeecCCCCCccccccCCCCCCCeeecCCCce-eEEEEEecCCcceeeEEEeC------CCCeEEEEEEeecc
Q psy12987 10 VSYSSEDPVHKADNLLNPESTKKWKCKSMGEK-QAVAILQLSSQVQINGIDIG------NEFSAFVEVFVAKS 75 (82)
Q Consensus 10 vs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~-~~~V~lql~~~~~I~~IDIG------N~gSAfiEvlVg~s 75 (82)
+++||- .|-|++|++. +..-|+ ++|.+ +.+|-|||.+-..|+++-|- +|-=.-|.|.+|.+
T Consensus 31 ~~VSS~--~~~~~~L~D~-~~TYWQ--SdG~q~~HwI~l~~~~~v~I~~L~i~vd~~DeSY~Ps~I~V~~G~~ 98 (152)
T cd08664 31 LTVSSN--ENQAKRLIDG-SGSYWQ--SSGSQGKHWIRLELHPDVLIHSLKIIVDPADSSYMPSLVVVSGGDS 98 (152)
T ss_pred EEEEcC--cccHHHhcCC-CCCeec--cCCCCCceEEEEEECCCcEEEEEEEEecCCCCCcCCceEEEEecCC
Confidence 455665 6889999988 777899 45776 59999999999999998774 55667788888876
No 16
>TIGR02961 allantoicase allantoicase. A different but similarly named enzyme, allantoate amidohydrolase (EC 3.5.3.9), simultaneously breaks down the urea to ammonia and carbon dioxide.
Probab=92.72 E-value=0.24 Score=39.29 Aligned_cols=52 Identities=27% Similarity=0.413 Sum_probs=40.9
Q ss_pred eEEEeecCCCCCccccccCCCCC----CCeeecC-CCceeEEEEEecCCcceeeEEEe
Q psy12987 8 RVVSYSSEDPVHKADNLLNPEST----KKWKCKS-MGEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 8 ~Vvs~SSEd~~hpaeNLL~~~~~----r~W~~~~-~Ge~~~~V~lql~~~~~I~~IDI 60 (82)
.|+.||.+.=.+ ++|||.++.. -+|-+++ -....=+++++|-.|-.|..|+|
T Consensus 183 ~vl~~sD~~fg~-~~Nli~pg~~~~mgDGWETrRrR~pG~DW~IvkLg~~G~I~~i~V 239 (322)
T TIGR02961 183 VVVACSDAHFGH-PDNLIGPGRGRNMGDGWETARRRDPGNDWAIVRLGAPGEIERIEV 239 (322)
T ss_pred EEEEecccccCC-HHHccCCCcccccccCcceeeccCCCCCEEEEEcCCCCeEEEEEE
Confidence 578888887665 7999998744 3788773 23345799999999999999998
No 17
>PRK13257 allantoicase; Provisional
Probab=92.09 E-value=0.34 Score=38.68 Aligned_cols=52 Identities=25% Similarity=0.345 Sum_probs=40.6
Q ss_pred eEEEeecCCCCCccccccCCCCCC----CeeecCC-CceeEEEEEecCCcceeeEEEe
Q psy12987 8 RVVSYSSEDPVHKADNLLNPESTK----KWKCKSM-GEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 8 ~Vvs~SSEd~~hpaeNLL~~~~~r----~W~~~~~-Ge~~~~V~lql~~~~~I~~IDI 60 (82)
.|+.||.+.=. +++|||.++..+ +|-+++- ....=+++++|-.|-.|..|.|
T Consensus 194 ~v~~~SD~hfg-~~~Nll~Pg~~~~mgDGWETrRrR~pG~DW~iikLg~~G~I~~ieV 250 (336)
T PRK13257 194 RVVACSNQHFG-SPSNLLLPGRGVNMGDGWETRRRREPGNDWVIVALAAPGVIRKIEV 250 (336)
T ss_pred EEEEecccccC-CHHHeeCCCcccccccccccccccCCCCCEEEEEcCCCCEEEEEEE
Confidence 57888887766 579999986543 7988743 2344799999999999999999
No 18
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=90.62 E-value=0.5 Score=39.51 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=47.4
Q ss_pred eEEEeecCCCCCccccccCCCC----CCCeeecC-CCceeEEEEEecCCcceeeEEEe------CCCC-eEEEEEE
Q psy12987 8 RVVSYSSEDPVHKADNLLNPES----TKKWKCKS-MGEKQAVAILQLSSQVQINGIDI------GNEF-SAFVEVF 71 (82)
Q Consensus 8 ~Vvs~SSEd~~hpaeNLL~~~~----~r~W~~~~-~Ge~~~~V~lql~~~~~I~~IDI------GN~g-SAfiEvl 71 (82)
.|+.||.+.=.+ ++|||.+.. +-+|-+++ -+...=+++++|-.|-.|..|+| ||+- ++-||-.
T Consensus 195 ~v~~~sD~~fg~-~~nli~pg~~~~mgDGWETrRrR~pg~Dw~iv~Lg~~G~I~~v~vDT~~FkGN~P~~~si~a~ 269 (516)
T PRK13797 195 VVVAASDMHYGD-RHNLNASGDARAMGEGWETRRRRGPGHDWAVVRLATQGTIVRAEVDTRHFRGNAPRAVALWAA 269 (516)
T ss_pred EEEEecccccCC-HHHccCCCCcccccccccccccCCCCCCEEEEEeCCCCEEEEEEEeCCccCCCCCCeEEEEEE
Confidence 578898887665 799999876 45898874 23345799999999999999998 6653 4445543
No 19
>TIGR02961 allantoicase allantoicase. A different but similarly named enzyme, allantoate amidohydrolase (EC 3.5.3.9), simultaneously breaks down the urea to ammonia and carbon dioxide.
Probab=88.49 E-value=1 Score=35.83 Aligned_cols=64 Identities=30% Similarity=0.444 Sum_probs=46.1
Q ss_pred eEEEeecCCCCCccccccCCCCC--------------CCeeecCCC-ceeEEEEEecCCcceeeEEEe------CCCC-e
Q psy12987 8 RVVSYSSEDPVHKADNLLNPEST--------------KKWKCKSMG-EKQAVAILQLSSQVQINGIDI------GNEF-S 65 (82)
Q Consensus 8 ~Vvs~SSEd~~hpaeNLL~~~~~--------------r~W~~~~~G-e~~~~V~lql~~~~~I~~IDI------GN~g-S 65 (82)
+|++||.|- -=+++|||+++.. -+|-+.+-. ..-=+++++|-.|-.|.+||| ||+- +
T Consensus 13 ~vl~~sDe~-Fa~~~nLl~p~~~~f~~~~f~~~G~~~DGWETRRrR~~g~DW~ivkLg~~G~I~~v~vDTa~F~GN~p~~ 91 (322)
T TIGR02961 13 KVLFASDEF-FAPAENLLKPEAPEFKPGVFDEFGKWMDGWETRRKRGAGHDWCIVRLGVPGVIHGVDIDTSFFTGNYPPA 91 (322)
T ss_pred EEEEEccch-hcCHHhccCCCCCccccccccccCccccCccccccCCCCCCEEEEEeCCCcEEEEEEEeCcccCCCCCCe
Confidence 577887653 3478999997643 378877432 234699999999999999999 6653 4
Q ss_pred EEEEEEe
Q psy12987 66 AFVEVFV 72 (82)
Q Consensus 66 AfiEvlV 72 (82)
+=||...
T Consensus 92 ~siea~~ 98 (322)
T TIGR02961 92 VSIEACL 98 (322)
T ss_pred EEEEEEe
Confidence 5566644
No 20
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=86.31 E-value=1.4 Score=36.87 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=39.3
Q ss_pred eEEEeecCCCCCccccccCCCC--------------CCCeeecCCC--ceeEEEEEecCCcceeeEEEe
Q psy12987 8 RVVSYSSEDPVHKADNLLNPES--------------TKKWKCKSMG--EKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 8 ~Vvs~SSEd~~hpaeNLL~~~~--------------~r~W~~~~~G--e~~~~V~lql~~~~~I~~IDI 60 (82)
.|++||.|-= -+++|||+++. +-+|-+.+-. ..-=+++++|-.|-.|.+|+|
T Consensus 21 ~v~~~sD~~F-a~~~nll~p~~~~~~~~~f~~~G~~~DGWETrR~R~~~g~DW~iirLg~~g~i~~v~v 88 (516)
T PRK13797 21 TVVAVNDEFF-AFAERMLLAEPPVVRPGVFTERGQWTDGWETRRRRDLPGADWAIVRLGAPGIAHAVTV 88 (516)
T ss_pred EEEEEccchh-cCHHhcCCCCCCccccccccccCccccCccccccCCCCCCCEEEEEeCCCcEEEEEEE
Confidence 5788876643 36899999763 2478777432 244799999999999999998
No 21
>PRK13257 allantoicase; Provisional
Probab=84.28 E-value=2.1 Score=34.27 Aligned_cols=52 Identities=27% Similarity=0.445 Sum_probs=39.1
Q ss_pred eEEEeecCCCCCccccccCCCC--------------CCCeeecCCC-ceeEEEEEecCCcceeeEEEe
Q psy12987 8 RVVSYSSEDPVHKADNLLNPES--------------TKKWKCKSMG-EKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 8 ~Vvs~SSEd~~hpaeNLL~~~~--------------~r~W~~~~~G-e~~~~V~lql~~~~~I~~IDI 60 (82)
+|++||.|-= =+++|||++.. +-+|-+.+-. ..-=+++++|-.|-.|.+|+|
T Consensus 28 ~vl~~sDe~F-a~~~nLl~p~~~~~~~~~f~~~Gk~~DGWETRRrR~~g~DW~IirLg~~G~I~~v~V 94 (336)
T PRK13257 28 QVLAASDEFF-AEKERMLNPEPAVFIPGKFDDHGKWMDGWETRRRRTTGHDWAIVRLGVPGVIRGVDV 94 (336)
T ss_pred EEEEEchhhh-cCHHHccCCCCCccccccccccCccccCccccccCCCCCCEEEEEcCCCcEEEEEEE
Confidence 6788887643 36899999752 2478777422 234699999999999999998
No 22
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=83.53 E-value=2.4 Score=31.73 Aligned_cols=52 Identities=15% Similarity=0.350 Sum_probs=30.1
Q ss_pred EEeecCCC----CCccccccCCCC---CCCeeec--CCCc--eeEEEEEecCCcceeeEEEeC
Q psy12987 10 VSYSSEDP----VHKADNLLNPES---TKKWKCK--SMGE--KQAVAILQLSSQVQINGIDIG 61 (82)
Q Consensus 10 vs~SSEd~----~hpaeNLL~~~~---~r~W~~~--~~Ge--~~~~V~lql~~~~~I~~IDIG 61 (82)
..|-+.+| .||++||.+... .+=|+.. ..|. ..+.+.|.|.+.-+|++|-|-
T Consensus 42 ~~Cda~~~~~~~~Hp~~~~~D~~~~~~~TwWQS~~~~~g~~~~~VtitLdL~~~f~v~~v~l~ 104 (237)
T PF00055_consen 42 FICDASDPDPRRSHPPSYLTDSHNPNNSTWWQSETLQNGVQYENVTITLDLGKEFEVTYVILQ 104 (237)
T ss_dssp EEE-TTSTSTTT---GGGGCSSSCTTB---EEB--STTTTSTT-EEEEEEEEEEEEEEEEEEE
T ss_pred ccCCCcccccccccChhhcccccccccCceecCCccCCCCcCcceEEEEcccceEEEEEEEEE
Confidence 34555544 799999998543 4567866 2454 467788888888888888763
No 23
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=81.03 E-value=1.4 Score=29.26 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=33.5
Q ss_pred CCccccccCCC---CCC--CeeecCCCceeEEEEEecCCcceeeEEEeCCC-------CeEE--EEEEeecc
Q psy12987 18 VHKADNLLNPE---STK--KWKCKSMGEKQAVAILQLSSQVQINGIDIGNE-------FSAF--VEVFVAKS 75 (82)
Q Consensus 18 ~hpaeNLL~~~---~~r--~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~-------gSAf--iEvlVg~s 75 (82)
.++++|+|.++ ... =|-. .| +..+|.+||.++..|++|-|.+. .||. +||.....
T Consensus 5 ~~~p~~il~~~~~~~~~g~Cw~~--~g-~~~~~~I~L~~~I~v~~v~i~h~~~~~~~~sSapk~f~V~g~~~ 73 (135)
T PF07738_consen 5 AKPPSNILSPDKDSYMPGPCWAF--EG-SKGWLTIELSEPIYVTSVTIEHVEKSIAPFSSAPKDFEVWGSVD 73 (135)
T ss_dssp ---GGGGGSS-----STT-SEEE--ET-T-EEEEEEEEEEEEEEEEEEE---GGGSG-TTSB-EEEEEEESS
T ss_pred cCChhheECCCCCcccCCccCcc--CC-CceEEEEEcCCcEEEEEEEEEEeccccCCcCCCCcEEEEEEEec
Confidence 46789999877 433 4633 34 44788889999999999998864 4454 55554433
No 24
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=78.48 E-value=3.7 Score=30.90 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=32.1
Q ss_pred CCccccccCCCC---CCCeeecC--CCceeEEEEEecCCcceeeEEEe
Q psy12987 18 VHKADNLLNPES---TKKWKCKS--MGEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 18 ~hpaeNLL~~~~---~r~W~~~~--~Ge~~~~V~lql~~~~~I~~IDI 60 (82)
.||++||.+... ..=|+... .|.+.+.|.|.|.+.-+|++|-|
T Consensus 58 ~Hp~~~l~D~~~~~~~TwWQS~~~~~~~~~VtitLdL~k~fevtyi~l 105 (238)
T smart00136 58 SHPAENLTDGNNPNNPTWWQSEPLSNGPQNVNLTLDLGKEFHVTYVIL 105 (238)
T ss_pred cCCHHHhhccCCCCCCceecCCCcCCCCccEEEEEecCCEEEEEEEEE
Confidence 599999998443 24677663 25667888888999888888765
No 25
>COG4266 Alc Allantoicase [Nucleotide transport and metabolism]
Probab=74.49 E-value=7.3 Score=31.14 Aligned_cols=52 Identities=27% Similarity=0.358 Sum_probs=40.1
Q ss_pred eEEEeecCCCCCccccccCCCCC----CCeeecCCCc-eeEEEEEecCCcceeeEEEe
Q psy12987 8 RVVSYSSEDPVHKADNLLNPEST----KKWKCKSMGE-KQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 8 ~Vvs~SSEd~~hpaeNLL~~~~~----r~W~~~~~Ge-~~~~V~lql~~~~~I~~IDI 60 (82)
.+|.||.++=.+ ++|||.++.. -.|-+++-.| +-=+|+++|..+..|..|-|
T Consensus 194 ~~v~~sdqHfG~-~~nLL~PGRg~nMgDGWET~RrRepGhDW~Iv~Lg~~g~Ie~i~V 250 (334)
T COG4266 194 RAVACSDQHFGS-VDNLLLPGRGINMGDGWETRRRREPGHDWVIVKLGARGFIEKILV 250 (334)
T ss_pred EEEEeccccccc-cccccccCcccccCCccccccccCCCCceEEEEccCCCceeeeEe
Confidence 578999887664 6899997643 4898774333 22699999999999999977
No 26
>PF06201 PITH: PITH domain; InterPro: IPR010400 The full-length, Txnl1, protein which is a probable component of the 32 kDa 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome. PITH derives from proteasome-interacting thioredoxin domain which this entry represents [].; PDB: 1XOY_A 1WWY_A.
Probab=74.19 E-value=8.1 Score=27.06 Aligned_cols=68 Identities=22% Similarity=0.283 Sum_probs=39.0
Q ss_pred cceeceEEEeecCCCCCccc-cccCCCCCC---CeeecCCCceeEEEEEecCCcceeeEEEeCC---CCeEEEEEEe
Q psy12987 3 PIKFARVVSYSSEDPVHKAD-NLLNPESTK---KWKCKSMGEKQAVAILQLSSQVQINGIDIGN---EFSAFVEVFV 72 (82)
Q Consensus 3 ~i~~~~Vvs~SSEd~~hpae-NLL~~~~~r---~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN---~gSAfiEvlV 72 (82)
-|.+..+ .|=.|+..|++. +++++...| .|.-. +-..|+=+-+-|..|++|++|-|-. .++|=-.|.+
T Consensus 5 ~Id~~~~-~cLN~~~~~~~~~~l~k~~~~r~d~~~l~S-D~D~QLii~IpF~~~Vkl~si~i~~~~~~~~~P~~iKl 79 (152)
T PF06201_consen 5 YIDLDKV-ECLNEDDPHSARNNLFKPWDDRLDPPFLES-DADEQLIIHIPFTQPVKLHSIIIKGPPDDDSAPKTIKL 79 (152)
T ss_dssp CB-TTT--EECSS-TTS-SCCCCSTTS--TTS---EE--SS-SSEEEEEEEEEEEEEEEEEEE---STTTSEEEEEE
T ss_pred hCccccc-EEEeCCCCCCccceeEcccccccCcccccc-CCCceeEEEEccCCceEEEEEEEEeccCCCCCCeEEEE
Confidence 3444443 455888889999 555544332 67766 5567777777899999999998853 4555444443
No 27
>KOG2437|consensus
Probab=72.36 E-value=5.9 Score=34.33 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=45.5
Q ss_pred EEEeecCCCCCccccccCC---CCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCCeE
Q psy12987 9 VVSYSSEDPVHKADNLLNP---ESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSA 66 (82)
Q Consensus 9 Vvs~SSEd~~hpaeNLL~~---~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gSA 66 (82)
|=|.||=..+|-.+|.|-. |.+.+|-|.. -.-.-+|+|.++|++-++-|-.|-++--
T Consensus 12 IhSwSsYss~y~P~NIl~d~P~d~NSRWS~~~-N~~~QYiiLKl~~~aLV~~ITFGKy~k~ 71 (723)
T KOG2437|consen 12 IHSWSSYSSTYLPENILVDKPNDQNSRWSSES-NYPPQYLILKLERPALVQNITFGKYEKT 71 (723)
T ss_pred hhccccccccccccceeeCCCCCcccccCCCC-CCCceeEEEEcCCceeEEEEeccccccc
Confidence 4577888889999999964 4556999973 3344589999999999999999988753
No 28
>KOG2931|consensus
Probab=55.65 E-value=7 Score=31.36 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=22.9
Q ss_pred eeEEEEEe--cC--CcceeeEEEeC-CCCeEEE
Q psy12987 41 KQAVAILQ--LS--SQVQINGIDIG-NEFSAFV 68 (82)
Q Consensus 41 ~~~~V~lq--l~--~~~~I~~IDIG-N~gSAfi 68 (82)
+.++|.+| .+ ||.-|++.||| |+-|+|-
T Consensus 32 G~v~V~V~Gd~~~~kpaiiTyhDlglN~~scFq 64 (326)
T KOG2931|consen 32 GVVHVTVYGDPKGNKPAIITYHDLGLNHKSCFQ 64 (326)
T ss_pred ccEEEEEecCCCCCCceEEEecccccchHhHhH
Confidence 55788887 66 88999999999 8888664
No 29
>smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
Probab=54.83 E-value=42 Score=21.89 Aligned_cols=49 Identities=20% Similarity=0.199 Sum_probs=31.1
Q ss_pred EEeecCCCCCcccc-ccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeC
Q psy12987 10 VSYSSEDPVHKADN-LLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIG 61 (82)
Q Consensus 10 vs~SSEd~~hpaeN-LL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIG 61 (82)
++.||+ .|++.. -|..+....|..+ .....-++.+.|-++..|++|.+.
T Consensus 14 itasS~--~~~~~~~rL~~~~~~~W~~~-~~~~~~wlqvDLg~~~~v~~i~~q 63 (139)
T smart00231 14 ITASSS--YWAAKIARLNGGSDGAWCPA-KNSLPPWIQVDLGRTRTVTGVITG 63 (139)
T ss_pred EEEcCC--CCCCCccCcCcCCCCcccCC-CCCCCceeEeeccCcEEEEEEEec
Confidence 456776 444433 3443224589755 333344677779999999999986
No 30
>PF07461 NADase_NGA: Nicotine adenine dinucleotide glycohydrolase (NADase); InterPro: IPR010900 This family consists of several bacterial nicotine adenine dinucleotide glycohydrolase (NGA) proteins which appear to be specific to Streptococcus pyogenes. NAD glycohydrolase (NADase) is a potential virulence factor. Streptococcal NADase may contribute to virulence by its ability to cleave beta-NAD at the ribose-nicotinamide bond, depleting intracellular NAD pools and producing the potent vasoactive compound nicotinamide [].; PDB: 3PNT_C.
Probab=53.01 E-value=4.5 Score=33.34 Aligned_cols=44 Identities=25% Similarity=0.345 Sum_probs=0.0
Q ss_pred cccccCCCCCCCeeecCCCceeE-EEEEecCCcceeeEEEeCCCC
Q psy12987 21 ADNLLNPESTKKWKCKSMGEKQA-VAILQLSSQVQINGIDIGNEF 64 (82)
Q Consensus 21 aeNLL~~~~~r~W~~~~~Ge~~~-~V~lql~~~~~I~~IDIGN~g 64 (82)
+=|+|+++....|.=..+|++.. ++.+.|..|..|.+|.|=|+-
T Consensus 69 ~~n~lDg~~~TsW~En~~G~GVGE~Ls~kf~sPi~i~~IqIiNGf 113 (446)
T PF07461_consen 69 IMNTLDGDMKTSWCENSPGGGVGETLSYKFASPIKIDRIQIINGF 113 (446)
T ss_dssp ---------------------------------------------
T ss_pred hheeecCCceeeEeecCCCCCcceEEEEEecCceeeceEEEEecC
Confidence 34999999888998666776554 556679999999999998864
No 31
>PF14652 DUF4457: Domain of unknown function (DUF4457)
Probab=52.15 E-value=31 Score=26.89 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=37.7
Q ss_pred CCccccccCC-----CCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCCeEE
Q psy12987 18 VHKADNLLNP-----ESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAF 67 (82)
Q Consensus 18 ~hpaeNLL~~-----~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gSAf 67 (82)
..-.+||+++ +...-|.|.-.-.++..+.+.|++++.|..|-|=||....
T Consensus 53 ~r~l~~Lidg~~~T~d~~~MWl~pf~~~~~~~i~i~f~~~~~is~iRIWNYNks~ 107 (329)
T PF14652_consen 53 PRTLDKLIDGVNLTTDDEHMWLAPFSPGKQHVITIRFPEPTSISGIRIWNYNKSR 107 (329)
T ss_pred ccceeEEECCeEccCcccceEEeecCCCCCEEEEEEeCCCceeeEEEEEcCCCCc
Confidence 3556777764 3345899983233677888999999999999999987655
No 32
>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]
Probab=50.33 E-value=10 Score=28.23 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=39.6
Q ss_pred EEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEe
Q psy12987 10 VSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 10 vs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDI 60 (82)
.-|||+-..||..=||+.+--.-|+ ++|.+-..+-+-|+|-..|.++.+
T Consensus 32 w~~SSfK~g~p~r~~lddn~dtyWq--sDg~qPH~i~I~F~kr~~I~~v~l 80 (189)
T COG5156 32 WRLSSFKRGHPLRELLDDNMDTYWQ--SDGVQPHSIQISFDKRRYIQSVQL 80 (189)
T ss_pred eeecccccCCcHHHHhhcchhhhhc--cCCCCCceEEEEEeEEEeeeeehh
Confidence 4589999999999999766445798 567777888888999999988754
No 33
>PF14652 DUF4457: Domain of unknown function (DUF4457)
Probab=48.81 E-value=34 Score=26.68 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=35.5
Q ss_pred CCccccccCC-----CCCCCeeec-CCC----ceeEEEEEecCCcceeeEEEeCCCC
Q psy12987 18 VHKADNLLNP-----ESTKKWKCK-SMG----EKQAVAILQLSSQVQINGIDIGNEF 64 (82)
Q Consensus 18 ~hpaeNLL~~-----~~~r~W~~~-~~G----e~~~~V~lql~~~~~I~~IDIGN~g 64 (82)
....+||++. |...-|+|+ .+| ++...|-+-|+.|..|+.|-|=||.
T Consensus 244 ~r~~~~Li~~~~~t~d~~~~Wlap~~~~~~~~~~~~~i~~~f~~p~~is~iriwNY~ 300 (329)
T PF14652_consen 244 PRTPDKLIDGVNNTCDDRHMWLAPFLPGLNDNEQPNVIYFIFDEPVTISMIRIWNYS 300 (329)
T ss_pred ccchhhcccCccCCCCcccceeccccCCccccccccEEEEEeCCCeEEEEEEEEecc
Confidence 3556778763 445689998 455 2667777779999999999999985
No 34
>smart00607 FTP eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain.
Probab=44.58 E-value=73 Score=22.29 Aligned_cols=71 Identities=11% Similarity=0.033 Sum_probs=48.0
Q ss_pred eceEEEeecCCCCC-c----cccccCCCCCCCe---eecC-CCceeEEEEEecCCcceeeEEEeCCCC------eEEEEE
Q psy12987 6 FARVVSYSSEDPVH-K----ADNLLNPESTKKW---KCKS-MGEKQAVAILQLSSQVQINGIDIGNEF------SAFVEV 70 (82)
Q Consensus 6 ~~~Vvs~SSEd~~h-p----aeNLL~~~~~r~W---~~~~-~Ge~~~~V~lql~~~~~I~~IDIGN~g------SAfiEv 70 (82)
+..-..-||..... + |+++.++++...| -|.. ..+..-+-.+.|.+...|..|-|=|=+ --=+||
T Consensus 6 ~~~~a~QSS~~~~~~~~~~~A~~AVDGn~~~~~~~~scthT~~e~~PWW~VDL~~~~~V~~V~I~NR~Dcc~~rl~~~eI 85 (151)
T smart00607 6 GRGPATQSTYGRGAPPGLSHASAAIDGNRASFTPEGSCSHTEKRSNPWWRVDLLQYMTIHSVTITNRGDCCGERITGARI 85 (151)
T ss_pred CCCceeeccccCCCCccccCHhHcCcCCccCCCCCCccccCCCCCCCeEEEeCCCeEEeeEEEEecCCCCCCccccceEE
Confidence 44555667776554 3 8999987765444 3443 344445666668999999999887743 345789
Q ss_pred EeeccC
Q psy12987 71 FVAKSS 76 (82)
Q Consensus 71 lVg~s~ 76 (82)
.||.|.
T Consensus 86 ~IG~s~ 91 (151)
T smart00607 86 LIGNSL 91 (151)
T ss_pred EECCcc
Confidence 999874
No 35
>KOG4145|consensus
Probab=43.32 E-value=14 Score=29.58 Aligned_cols=42 Identities=29% Similarity=0.418 Sum_probs=31.5
Q ss_pred CccccccCCCCC----CCeeecCCCc--eeEEEEEecCCcceeeEEEe
Q psy12987 19 HKADNLLNPEST----KKWKCKSMGE--KQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 19 hpaeNLL~~~~~----r~W~~~~~Ge--~~~~V~lql~~~~~I~~IDI 60 (82)
-..+|||.++.. -.|.+++..+ -+-++++||-+.+.|.-|=|
T Consensus 216 g~~dnlllpgrg~~m~dgwet~rsr~~gh~dw~vi~lg~~~~i~~~iv 263 (340)
T KOG4145|consen 216 GSVDNLLLPGRGHDMSDGWETKRSRQPGHTDWAVIQLGRESFIEKIIV 263 (340)
T ss_pred ccccceeccCCCcccccccccccccCCCCcceEEEEechhhhhhhhhe
Confidence 468999997543 4898774433 45689999999999887765
No 36
>KOG2687|consensus
Probab=42.73 E-value=52 Score=27.23 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=39.1
Q ss_pred CCccccccCCCCC--CCeeecCCCceeEEEEEecCCcceeeEEEeCCCCeEEEEEEeeccCCCCCC
Q psy12987 18 VHKADNLLNPEST--KKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAKSSNPDDY 81 (82)
Q Consensus 18 ~hpaeNLL~~~~~--r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gSAfiEvlVg~s~~~~~f 81 (82)
..|..++|.++-+ .-|-.. ..+++|.+||.++..++.|-+=--..+ |.-.-+.|+.|-||
T Consensus 280 ~~~P~vil~~~v~PG~Cw~Fk---Gsrg~v~V~La~~Iip~avTleHv~~s-Vspd~~~sSAPKdf 341 (414)
T KOG2687|consen 280 HQPPRVILQPNVSPGECWAFK---GSRGYVTVRLARFIIPSAVTLEHVPKS-VSPDGNISSAPKDF 341 (414)
T ss_pred cCCCceEecCCCCccceeeec---CCceEEEEEecceEEeeeeeeecccce-ecCCCCcCcCCcce
Confidence 3577788887754 367655 367899999999999988876444333 33333344455555
No 37
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=40.31 E-value=38 Score=18.21 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=19.9
Q ss_pred EEEEecCCcceeeEEEeCCCCeEEE
Q psy12987 44 VAILQLSSQVQINGIDIGNEFSAFV 68 (82)
Q Consensus 44 ~V~lql~~~~~I~~IDIGN~gSAfi 68 (82)
-..+++.+..+|..|--|..+|++|
T Consensus 27 P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 27 PTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp EEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred EEEECCCCCCCEEEEEeCcceEEEC
Confidence 3445666668899999999999886
No 38
>COG4266 Alc Allantoicase [Nucleotide transport and metabolism]
Probab=38.11 E-value=53 Score=26.38 Aligned_cols=57 Identities=33% Similarity=0.467 Sum_probs=38.9
Q ss_pred EEEeecCCCCCccccccCCC-----------CC---CCeeecC-CCceeEEEEEecCCcceeeEEEe------CCCCeE
Q psy12987 9 VVSYSSEDPVHKADNLLNPE-----------ST---KKWKCKS-MGEKQAVAILQLSSQVQINGIDI------GNEFSA 66 (82)
Q Consensus 9 Vvs~SSEd~~hpaeNLL~~~-----------~~---r~W~~~~-~Ge~~~~V~lql~~~~~I~~IDI------GN~gSA 66 (82)
|++||.| =--|+||+|++. +. -.|-+.+ -+...=+|++.|..|-.|.+.|| ||.-+|
T Consensus 29 v~~~sDe-fFap~erml~p~~pi~~pg~fdd~GkWmDGWETRR~r~~g~D~~iiklg~~g~i~G~dIDTsfFtGNhppa 106 (334)
T COG4266 29 VVFASDE-FFAPAERMLQPEPPIRKPGVFDDSGKWMDGWETRRHREAGYDWVIIKLGVPGRIKGVDIDTSFFTGNHPPA 106 (334)
T ss_pred EEEeecc-ccccHHHhCCCCCcccCCceecccCccccchhhhhccCCCCCEEEEEecCCceEEeeeeecceecCCCCCc
Confidence 5555543 446899999853 11 2566663 34455688899999999999999 665544
No 39
>KOG0114|consensus
Probab=36.34 E-value=34 Score=23.97 Aligned_cols=21 Identities=38% Similarity=0.414 Sum_probs=16.5
Q ss_pred cCCcceeeEEEeCCC----CeEEEE
Q psy12987 49 LSSQVQINGIDIGNE----FSAFVE 69 (82)
Q Consensus 49 l~~~~~I~~IDIGN~----gSAfiE 69 (82)
|-+=..|.+|-|||. |+|||-
T Consensus 39 FGkyg~IrQIRiG~~k~TrGTAFVV 63 (124)
T KOG0114|consen 39 FGKYGTIRQIRIGNTKETRGTAFVV 63 (124)
T ss_pred hhcccceEEEEecCccCcCceEEEE
Confidence 455667889999985 899983
No 40
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.26 E-value=46 Score=23.78 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=33.4
Q ss_pred cCCCCCcc---ccccCCCCCCCeeecCCCceeEEEEEecCCcce-eeEEEeCCC
Q psy12987 14 SEDPVHKA---DNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQ-INGIDIGNE 63 (82)
Q Consensus 14 SEd~~hpa---eNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~-I~~IDIGN~ 63 (82)
..||.+|. -|.| ++.||.|+-++-+ ++-++=+.++.+++ |-...++.+
T Consensus 51 P~DP~~~~yrqG~TL-G~~~khW~RaKf~-~ryRLFFRy~s~skiIv~aWvNDe 102 (140)
T PF11663_consen 51 PADPTRPEYRQGNTL-GDEYKHWFRAKFF-QRYRLFFRYDSESKIIVYAWVNDE 102 (140)
T ss_pred cCCCCchHhhCCCCC-cccccchhhhccc-ceeeEEEEecCccCEEEEEEeCCC
Confidence 35776665 4555 4569999988766 48999999998884 445555543
No 41
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=33.29 E-value=68 Score=26.95 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=25.6
Q ss_pred EEEEecCCcceeeEEEeCCCCeEEEEEEeecc
Q psy12987 44 VAILQLSSQVQINGIDIGNEFSAFVEVFVAKS 75 (82)
Q Consensus 44 ~V~lql~~~~~I~~IDIGN~gSAfiEvlVg~s 75 (82)
-..-+|.+-..++.||+|++|.+-+||.--+-
T Consensus 224 l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~ 255 (461)
T PF05694_consen 224 LHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHD 255 (461)
T ss_dssp EEEEETTTTEEEEEEES-TTEEEEEEEEE-SS
T ss_pred EEEEECCCCcEeeEEecCCCCCceEEEEecCC
Confidence 34567999999999999999999999976544
No 42
>PRK14681 hypothetical protein; Provisional
Probab=33.29 E-value=55 Score=23.44 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=20.0
Q ss_pred CCeeecCCCceeEEEEEecCCcceeeEEEeCCCCeEEEEEEeeccC
Q psy12987 31 KKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAKSS 76 (82)
Q Consensus 31 r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gSAfiEvlVg~s~ 76 (82)
|.|+|. -|| +-++-+ =|+.-=+||||.-.++.
T Consensus 67 rN~R~~-~GE--IDIIa~-----------d~~~~LVFVEVKtR~~~ 98 (158)
T PRK14681 67 RNWHCR-YGE--LDIVAL-----------NPEYTIVFVEVKTRRSM 98 (158)
T ss_pred EEEeCC-CCc--EEEEEE-----------cCCceEEEEEEEeccCC
Confidence 478886 666 444421 03335799999987764
No 43
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=29.61 E-value=50 Score=16.83 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=11.6
Q ss_pred eeEEEeCCCCeEEE
Q psy12987 55 INGIDIGNEFSAFV 68 (82)
Q Consensus 55 I~~IDIGN~gSAfi 68 (82)
|.+|..|..+++++
T Consensus 1 V~~ia~G~~ht~al 14 (30)
T PF13540_consen 1 VVQIACGGYHTCAL 14 (30)
T ss_dssp EEEEEEESSEEEEE
T ss_pred CEEEEecCCEEEEE
Confidence 56788999998876
No 44
>PF15149 CATSPERB: Cation channel sperm-associated protein subunit beta protein family
Probab=29.52 E-value=89 Score=26.80 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=25.8
Q ss_pred CCCCeeecCCCceeEEEEEecC-----CcceeeEEEeCCCCeEEEEEE
Q psy12987 29 STKKWKCKSMGEKQAVAILQLS-----SQVQINGIDIGNEFSAFVEVF 71 (82)
Q Consensus 29 ~~r~W~~~~~Ge~~~~V~lql~-----~~~~I~~IDIGN~gSAfiEvl 71 (82)
..|+|+.- ++...-.||-+ .-..|.+||+||..+=-+-|.
T Consensus 141 ~gr~W~I~---~~~Cny~~qq~~~d~~sln~vkYiDlg~~~~l~~kvi 185 (540)
T PF15149_consen 141 NGRTWKIY---SKPCNYWFQQDSDDSLSLNIVKYIDLGNSLTLKFKVI 185 (540)
T ss_pred CCceEEEe---cccchheeeeccCCccccceEEEEecCCceEEEEEEE
Confidence 45799977 33343344544 234899999999887544444
No 45
>COG1558 FlgC Flagellar basal body rod protein [Cell motility and secretion]
Probab=28.51 E-value=41 Score=23.97 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=16.3
Q ss_pred ceeceEEEeec----C-CCCCcccc
Q psy12987 4 IKFARVVSYSS----E-DPVHKADN 23 (82)
Q Consensus 4 i~~~~Vvs~SS----E-d~~hpaeN 23 (82)
||+..|++--| + ||.||..|
T Consensus 65 VkV~~I~eD~s~~~~~YdP~hP~Ad 89 (137)
T COG1558 65 VKVSKIVEDPSPFKLVYDPGHPDAD 89 (137)
T ss_pred eEEEEEeecCCCceeeeCCCCCCcc
Confidence 78888888777 3 89999988
No 46
>PF15453 Pilt: Protein incorporated later into Tight Junctions
Probab=28.03 E-value=30 Score=27.73 Aligned_cols=13 Identities=46% Similarity=0.769 Sum_probs=11.7
Q ss_pred ceEEEeecCCCCC
Q psy12987 7 ARVVSYSSEDPVH 19 (82)
Q Consensus 7 ~~Vvs~SSEd~~h 19 (82)
.+|++|||||++.
T Consensus 62 rkViefssedKv~ 74 (319)
T PF15453_consen 62 RKVIEFSSEDKVR 74 (319)
T ss_pred ceeeeccccccee
Confidence 5799999999986
No 47
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=25.90 E-value=51 Score=21.30 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=24.2
Q ss_pred ccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCCeEEEEEE-eeccCC
Q psy12987 22 DNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVF-VAKSSN 77 (82)
Q Consensus 22 eNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gSAfiEvl-Vg~s~~ 77 (82)
||||..+ ||+.+.. .+.+-|..+..+++ ||+=-.==+|. +||-.|
T Consensus 1 e~ll~~~-yr~y~Ge-------kidi~fn~~iC~Hs---~nCV~Gn~~vF~~~rkPW 46 (74)
T COG3592 1 EALLDGG-YRKYRGE-------KIDIYFNTAICAHS---GNCVRGNPKVFNLGRKPW 46 (74)
T ss_pred CccccCC-cceeccc-------eEEEEeccceeecc---cceecCCHhhcccCCCCc
Confidence 5677544 7776633 24455776666554 44321112344 777777
No 48
>COG5328 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.13 E-value=16 Score=26.41 Aligned_cols=55 Identities=27% Similarity=0.375 Sum_probs=32.1
Q ss_pred ceEEEeecCCCCCccccccCCCCCCC-----ee-ecCCCceeEEEEEecCCcceeeEEEeC-----CCCeE
Q psy12987 7 ARVVSYSSEDPVHKADNLLNPESTKK-----WK-CKSMGEKQAVAILQLSSQVQINGIDIG-----NEFSA 66 (82)
Q Consensus 7 ~~Vvs~SSEd~~hpaeNLL~~~~~r~-----W~-~~~~Ge~~~~V~lql~~~~~I~~IDIG-----N~gSA 66 (82)
+-|..+++|+.++.+..+|.--+.|. .. |.+ -+=-+.=..|++|..||.| |+||-
T Consensus 64 rLvF~i~~e~g~~v~tHiLSLtPfRrivkDYfmICeS-----YY~AIRsstPsqIEAiDMGRRGlHNeGSq 129 (160)
T COG5328 64 RLVFAIAREGGTAVATHILSLTPFRRIVKDYFMICES-----YYQAIRSSTPSQIEAIDMGRRGLHNEGSQ 129 (160)
T ss_pred eeeeEeeccCchhHHHhhhccCcHHHHHHHHHHHHHH-----HHHHHHhCCHhhhhHhhhcccccccccHH
Confidence 45667777777777777775333321 11 110 0001224679999999988 66663
No 49
>PRK10431 N-acetylmuramoyl-l-alanine amidase II; Provisional
Probab=23.63 E-value=4.1e+02 Score=21.94 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=32.3
Q ss_pred CCCeeecC-CCceeEEEEEecCCcceeeEEEeCCCCeEEEEEEe
Q psy12987 30 TKKWKCKS-MGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFV 72 (82)
Q Consensus 30 ~r~W~~~~-~Ge~~~~V~lql~~~~~I~~IDIGN~gSAfiEvlV 72 (82)
-+.||... .+.+..+++|.|.+|..+......+.+.+=+-|.+
T Consensus 82 v~~iR~g~~~~~~~~RlVldL~~p~~~~~~~~~~~~~~rLvidL 125 (445)
T PRK10431 82 VKAIRSGTPKDAQTLRLVVDLTENGKTEAVKRQNGSNYTVVFTI 125 (445)
T ss_pred hheEEecccCCCCcEEEEEECCCCceeeEeccCCCCceEEEEEc
Confidence 46899654 35667999999999999998777666666555555
No 50
>PRK14673 hypothetical protein; Provisional
Probab=22.66 E-value=65 Score=22.53 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=11.3
Q ss_pred CCCCeEEEEEEeeccC
Q psy12987 61 GNEFSAFVEVFVAKSS 76 (82)
Q Consensus 61 GN~gSAfiEvlVg~s~ 76 (82)
|+.-=.||||.-.++.
T Consensus 66 ~~~~lVFVEVKtR~~~ 81 (137)
T PRK14673 66 RDGTLVFVEVRARASR 81 (137)
T ss_pred CCcEEEEEEEEeCCCC
Confidence 4445689999987653
No 51
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=22.53 E-value=35 Score=26.60 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=16.5
Q ss_pred eeEEEEEe--cC--CcceeeEEEeC-CCCeEE
Q psy12987 41 KQAVAILQ--LS--SQVQINGIDIG-NEFSAF 67 (82)
Q Consensus 41 ~~~~V~lq--l~--~~~~I~~IDIG-N~gSAf 67 (82)
+.+.|.+| .+ ||.-|++=||| |.-|+|
T Consensus 9 G~v~V~v~G~~~~~kp~ilT~HDvGlNh~scF 40 (283)
T PF03096_consen 9 GSVHVTVQGDPKGNKPAILTYHDVGLNHKSCF 40 (283)
T ss_dssp EEEEEEEESS--TTS-EEEEE--TT--HHHHC
T ss_pred eEEEEEEEecCCCCCceEEEeccccccchHHH
Confidence 56777777 44 99999999999 665655
No 52
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=22.43 E-value=72 Score=22.49 Aligned_cols=16 Identities=44% Similarity=0.497 Sum_probs=12.1
Q ss_pred eeeEEEeC--CCCeEEEE
Q psy12987 54 QINGIDIG--NEFSAFVE 69 (82)
Q Consensus 54 ~I~~IDIG--N~gSAfiE 69 (82)
.|-+|||| |.+=+++|
T Consensus 2 ii~sIDiGikNlA~~iie 19 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIE 19 (143)
T ss_pred eEEEEecCCCceeEEEEE
Confidence 36689999 77767777
No 53
>PRK14687 hypothetical protein; Provisional
Probab=21.44 E-value=1.2e+02 Score=22.32 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=20.0
Q ss_pred CCeeecCCCceeEEEEEecCCcceeeEEEeCC---CCeEEEEEEeeccC
Q psy12987 31 KKWKCKSMGEKQAVAILQLSSQVQINGIDIGN---EFSAFVEVFVAKSS 76 (82)
Q Consensus 31 r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN---~gSAfiEvlVg~s~ 76 (82)
|.|+|.+.|| +-++-+ | |+ .--+||||.-.++.
T Consensus 54 RN~R~~r~GE--IDIIA~----------d-~~~~~~~LVFVEVKtR~~~ 89 (173)
T PRK14687 54 RNWQQPKVGE--LDLVML----------E-KGQAWSTLVFAEVRQRKLS 89 (173)
T ss_pred ecccCCCCcc--EEEEEe----------c-CCCCCCEEEEEEEeECCCC
Confidence 5788754677 444422 1 22 34699999987653
No 54
>PRK03719 ecotin; Provisional
Probab=21.43 E-value=1.3e+02 Score=21.88 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=24.1
Q ss_pred CCCceeEEEEEecCCcceeeEEEeCCCCeEEEEEEeeccC
Q psy12987 37 SMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAKSS 76 (82)
Q Consensus 37 ~~Ge~~~~V~lql~~~~~I~~IDIGN~gSAfiEvlVg~s~ 76 (82)
+|.+++.+.+|+|+. ..|+.--.||+.+|+.-
T Consensus 42 ~p~~G~~r~Vi~Lp~--------~~~e~~~kVEliiGk~~ 73 (166)
T PRK03719 42 QAEKGMKRQVITLPP--------QEDESDYKVELLIGQTL 73 (166)
T ss_pred CCCCCCEEEEEEcCC--------CCChhHeeEEEecCCEE
Confidence 455666778888887 34788889999999864
No 55
>KOG3268|consensus
Probab=20.84 E-value=31 Score=26.30 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=22.3
Q ss_pred cCCcceeeEEEeCCCCeEEEEEEeeccC
Q psy12987 49 LSSQVQINGIDIGNEFSAFVEVFVAKSS 76 (82)
Q Consensus 49 l~~~~~I~~IDIGN~gSAfiEvlVg~s~ 76 (82)
=.|+..+.+|+.||.-+-.|||.-..-.
T Consensus 80 P~RaaaaRRIa~GNd~~I~ieiD~k~Pk 107 (234)
T KOG3268|consen 80 PARAAAARRIAAGNDCIIIIEIDFKDPK 107 (234)
T ss_pred CchHHHHHHhhcCCceEEEEEecCCCCc
Confidence 3455689999999999999999765543
No 56
>PF13595 DUF4138: Domain of unknown function (DUF4138)
Probab=20.23 E-value=1.1e+02 Score=23.21 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=15.0
Q ss_pred ceeEEEEEecCCcceeeEEEeCCCC
Q psy12987 40 EKQAVAILQLSSQVQINGIDIGNEF 64 (82)
Q Consensus 40 e~~~~V~lql~~~~~I~~IDIGN~g 64 (82)
.++.+++ | |+.|.++|+|...
T Consensus 7 ~kT~hii--F--P~~Ir~VD~gs~~ 27 (246)
T PF13595_consen 7 NKTTHII--F--PSPIRYVDLGSND 27 (246)
T ss_pred CcEEEEE--c--ccccEEEecCCCc
Confidence 3556666 5 4559999999874
No 57
>KOG2912|consensus
Probab=20.13 E-value=47 Score=27.44 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=17.6
Q ss_pred ecCCcceeeEEEeCCCCeEE
Q psy12987 48 QLSSQVQINGIDIGNEFSAF 67 (82)
Q Consensus 48 ql~~~~~I~~IDIGN~gSAf 67 (82)
|.++-+.+.+||||-.-||.
T Consensus 97 q~~k~~i~~GiDIgtgasci 116 (419)
T KOG2912|consen 97 QSDKSTIRRGIDIGTGASCI 116 (419)
T ss_pred cCCCcceeeeeeccCchhhh
Confidence 68888899999999988874
Done!