Query psy12987
Match_columns 82
No_of_seqs 70 out of 72
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 16:13:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lqc_A DNA repair protein XRCC 100.0 3.8E-45 1.3E-49 265.9 -2.3 81 1-81 1-84 (189)
2 2yc2_A IFT25, intraflagellar t 98.5 1.1E-07 3.9E-12 63.6 5.1 79 1-81 5-87 (139)
3 1tvg_A LOC51668 protein; cell 98.4 7.8E-07 2.7E-11 61.3 6.6 72 8-81 24-95 (153)
4 2j1a_A Hyaluronidase, CBM32; p 97.3 0.0012 4.2E-08 41.6 7.0 53 9-61 13-71 (150)
5 4a41_A GH89_CBM32-5, alpha-N-a 97.3 0.0021 7.2E-08 42.9 8.4 52 10-61 32-89 (161)
6 3f2z_A Uncharacterized protein 97.1 0.0035 1.2E-07 41.2 8.3 53 8-60 11-72 (159)
7 2jda_A Yecbm32; hypothetical p 97.0 0.0012 4E-08 42.0 5.1 50 9-62 12-63 (145)
8 3ggl_A Putative chitobiase; X- 96.9 0.0069 2.3E-07 40.4 8.5 54 8-61 21-83 (169)
9 3hnm_A Putative chitobiase; PS 96.4 0.021 7.2E-07 39.4 8.0 68 8-75 19-107 (172)
10 2v72_A CBM32, EXO-alpha-sialid 96.3 0.0077 2.6E-07 37.8 5.3 54 10-63 18-73 (143)
11 4a3z_A GH89_CBM32, alpha-N-ace 96.2 0.0066 2.3E-07 41.3 4.8 68 5-73 30-100 (161)
12 1jhj_A APC10; beta sandwich, j 96.1 0.0046 1.6E-07 43.6 3.5 68 7-76 27-101 (171)
13 1o59_A Allantoicase; YIR029W, 95.9 0.035 1.2E-06 43.4 8.1 64 8-72 218-295 (355)
14 1gqp_A DOC1/APC10; cell cycle, 95.8 0.013 4.3E-07 43.2 4.8 68 7-76 58-132 (221)
15 3lei_A Platelet aggregation fa 95.5 0.018 6.2E-07 38.0 4.5 72 4-75 12-94 (153)
16 3eyp_A Putative alpha-L-fucosi 95.1 0.029 1E-06 44.3 5.2 53 7-60 330-383 (469)
17 3ues_A Alpha-1,3/4-fucosidase; 94.9 0.021 7.3E-07 45.3 3.9 62 9-73 360-428 (478)
18 1o59_A Allantoicase; YIR029W, 94.6 0.097 3.3E-06 40.9 6.8 64 7-71 44-130 (355)
19 1w8o_A Bacterial sialidase; 3D 94.5 0.21 7.1E-06 38.5 8.5 53 9-61 465-524 (601)
20 1k3i_A Galactose oxidase precu 94.0 0.09 3.1E-06 41.0 5.5 54 9-62 32-89 (656)
21 3cqo_A FBP32; F-lectin, fucole 93.9 0.12 4.2E-06 37.1 5.7 72 4-75 154-234 (293)
22 2j1v_A Fucolectin-related prot 93.9 0.099 3.4E-06 34.8 4.8 72 5-76 19-100 (151)
23 2j22_A Fucolectin-related prot 93.8 0.15 5E-06 33.9 5.6 73 4-76 15-97 (148)
24 1k12_A Lectin; beta barrel, pr 93.1 0.18 6.2E-06 33.5 5.1 73 4-76 11-98 (158)
25 4gwi_A Lectinolysin, platelet 92.8 0.16 5.5E-06 34.0 4.6 72 4-75 12-94 (153)
26 3cqo_A FBP32; F-lectin, fucole 91.6 0.25 8.6E-06 35.4 4.7 72 4-75 6-89 (293)
27 4a4a_A Alpha-N-acetylglucosami 90.9 0.66 2.3E-05 39.8 7.2 54 4-60 27-80 (914)
28 4a42_A GH89_CBM32-4, alpha-N-a 90.3 0.4 1.4E-05 31.5 4.4 45 14-60 36-80 (149)
29 3bn6_A Lactadherin; anticoagul 86.1 0.96 3.3E-05 29.7 4.1 51 10-61 17-76 (158)
30 2v5d_A O-GLCNACASE NAGJ; famil 85.6 0.79 2.7E-05 37.7 4.1 53 10-62 601-659 (737)
31 2qqi_A Neuropilin-1; VEGF rece 79.5 1.5 5.2E-05 31.8 3.3 51 9-60 22-73 (318)
32 1czt_A Protein (coagulation fa 78.9 2.7 9.2E-05 27.7 4.1 50 10-60 18-74 (160)
33 4deq_A Neuropilin-1, vascular 77.3 2 6.8E-05 30.5 3.3 50 10-60 22-72 (218)
34 2y38_A Laminin subunit alpha-5 73.3 3.3 0.00011 32.3 3.8 49 12-61 72-126 (403)
35 2qqj_A Neuropilin-2; VEGF rece 70.4 4.8 0.00016 29.2 3.9 51 9-60 22-74 (325)
36 1wwy_A Thioredoxin-like protei 66.9 9.7 0.00033 26.4 4.7 55 4-62 16-70 (171)
37 1xoy_A Hypothetical protein AT 65.7 6.7 0.00023 26.9 3.7 56 4-61 20-78 (161)
38 2vm9_A Discoidin-2, discoidin 64.7 6.3 0.00021 28.2 3.5 52 8-60 16-78 (257)
39 2qqm_A Neuropilin-1; VEGF rece 63.7 5.7 0.0002 29.9 3.3 50 10-60 155-205 (450)
40 4aqt_A Laminin subunit gamma-1 59.3 13 0.00046 28.4 4.7 46 16-61 67-120 (375)
41 3hny_M Coagulation factor VIII 58.7 12 0.0004 24.6 3.8 51 10-61 21-77 (159)
42 3tbd_A Netrin-G2, laminet-2; l 57.2 14 0.00049 28.3 4.5 43 14-56 68-117 (338)
43 4aqs_A Laminin subunit beta-1; 55.4 10 0.00036 29.2 3.5 29 31-60 93-121 (525)
44 2qqm_A Neuropilin-1; VEGF rece 53.3 19 0.00064 27.1 4.6 51 10-60 311-364 (450)
45 1sdd_B Coagulation factor V; c 49.3 22 0.00074 28.2 4.5 52 9-60 345-401 (647)
46 2wuh_A Discoidin domain recept 48.6 19 0.00067 24.2 3.7 51 10-60 34-90 (178)
47 2qqi_A Neuropilin-1; VEGF rece 47.1 21 0.00071 25.7 3.8 51 10-60 179-232 (318)
48 3zyj_B Netrin-G1; cell adhesio 42.5 30 0.001 27.2 4.3 40 16-56 98-145 (426)
49 2wn3_A Discoidin-1 subunit A; 37.5 29 0.00099 24.8 3.3 52 7-61 15-78 (254)
50 4dxt_A SUN domain-containing p 37.2 48 0.0017 23.1 4.4 42 19-63 67-110 (198)
51 2kqv_A Non-structural protein 37.1 10 0.00034 27.5 0.8 59 1-62 102-177 (198)
52 2ych_A Competence protein PILM 36.4 23 0.00077 25.3 2.6 23 49-71 9-31 (377)
53 2qqo_A Neuropilin-2; VEGF rece 36.2 38 0.0013 25.5 3.9 50 10-60 152-203 (460)
54 4gz9_A Neuropilin-1, A5 protei 34.6 26 0.00089 27.5 2.9 50 10-60 273-323 (577)
55 2zxq_A Endo-alpha-N-acetylgala 33.9 8.6 0.0003 34.7 0.0 51 10-60 1229-1289(1376)
56 4ag4_A Epithelial discoidin do 29.2 43 0.0015 25.4 3.2 48 10-58 22-75 (351)
57 2cho_A Glucosaminidase, hexosa 28.7 12 0.00041 31.0 -0.0 44 18-61 602-647 (716)
58 2g0c_A ATP-dependent RNA helic 28.7 59 0.002 18.3 3.1 20 51-71 29-48 (76)
59 2qqj_A Neuropilin-2; VEGF rece 27.4 62 0.0021 23.2 3.7 51 10-60 180-233 (325)
60 3gdb_A Endo-D, putative unchar 26.9 13 0.00046 32.2 0.0 57 6-65 804-866 (937)
61 2qqk_A Neuropilin-2; VEGF rece 26.4 68 0.0023 24.8 3.9 52 10-62 271-324 (579)
62 2w1s_A Hyaluronoglucosaminidas 26.0 44 0.0015 22.6 2.5 38 21-58 40-81 (192)
63 2qqk_A Neuropilin-2; VEGF rece 21.8 82 0.0028 24.4 3.6 51 10-60 428-481 (579)
64 3ktp_B Trinucleotide repeat-co 21.8 29 0.00099 16.9 0.7 9 74-82 3-11 (22)
65 1sdd_B Coagulation factor V; c 21.6 87 0.003 24.7 3.8 50 10-60 505-561 (647)
66 2qqo_A Neuropilin-2; VEGF rece 20.2 1E+02 0.0036 23.1 3.8 51 10-60 309-362 (460)
No 1
>3lqc_A DNA repair protein XRCC1; allosteric disulfide, scaffolding protein, DNA repair, DNA D nucleus, phosphoprotein, polymorphism, DNA replication; HET: DNA; 2.35A {Homo sapiens} PDB: 3k75_B* 1xna_A 1xnt_A 3k77_A*
Probab=100.00 E-value=3.8e-45 Score=265.90 Aligned_cols=81 Identities=46% Similarity=0.726 Sum_probs=77.7
Q ss_pred CCcceeceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCCeEEEEEEeeccCC---
Q psy12987 1 MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAKSSN--- 77 (82)
Q Consensus 1 Mp~i~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gSAfiEvlVg~s~~--- 77 (82)
||+|+|+||||||||||+|||+|||++|+||+|+|+++||++++|||||++|++|++|||||+||||||||||||+|
T Consensus 1 Mp~vk~k~Vvs~SSED~~~~AeNLL~~d~~rkW~~~~~gek~~~VeLQle~~~~I~~IDIGN~gSAfIEVlVgrS~~~~~ 80 (189)
T 3lqc_A 1 MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDIGNDGSAFVEVLVGSSAGGAG 80 (189)
T ss_dssp -CCGGGEEEEEETTSCHHHHHHHHHTCHHHHHHHHHTTTCSEEEEEEEEEEEECCCEEEEEEEBCSEEEEEEECCTTCCC
T ss_pred CCcceeeEEEEEcCCCCCCchhhccCCCCCCceeccCCCCceEEEEEEcCCceEeeEEeecCCceEEEEEEeecccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy12987 78 PDDY 81 (82)
Q Consensus 78 ~~~f 81 (82)
++||
T Consensus 81 ~~~f 84 (189)
T 3lqc_A 81 EQDY 84 (189)
T ss_dssp GGGC
T ss_pred CCCc
Confidence 3666
No 2
>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A
Probab=98.53 E-value=1.1e-07 Score=63.62 Aligned_cols=79 Identities=20% Similarity=0.244 Sum_probs=63.2
Q ss_pred CCcceece----EEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCCeEEEEEEeeccC
Q psy12987 1 MAPIKFAR----VVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAKSS 76 (82)
Q Consensus 1 Mp~i~~~~----Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gSAfiEvlVg~s~ 76 (82)
|+.+-+.+ |+..||.|+.||++|+|+++....|.+ +|.....++++|.++..|.+|.|=-++-.=+++.++..+
T Consensus 5 ~~~~a~~~~g~~v~~~ss~~~~~~~~~~iDg~~~T~W~s--~g~~pq~i~I~~~~~~~is~~~i~~~~~k~~~ie~s~~~ 82 (139)
T 2yc2_A 5 MKDYAREENGGLVVMASCSDERFPPENMLDGKDNTFWVT--TGMFPQEFVLRLESCIRVSKITTLSLNVRKLAVEKCDQD 82 (139)
T ss_dssp CEETTSSTTSCEECCCSCCBTTSCGGGGGSSCTTCCEEC--CSSSCEEEEEEEEEEEEEEEEEEEEESEEEEEEEEECSS
T ss_pred cceehhccCCcEEEEeccCCCCCChhheECCCCCCEEeC--CCCCCeEEEEECCCceEEEEEEEEecCCcEEEEEEecCC
Confidence 45555666 999999999999999999998889986 454557889999999999999997666666777777665
Q ss_pred CCCCC
Q psy12987 77 NPDDY 81 (82)
Q Consensus 77 ~~~~f 81 (82)
.|.+|
T Consensus 83 ~p~~w 87 (139)
T 2yc2_A 83 KPDQF 87 (139)
T ss_dssp SCCCC
T ss_pred CCCce
Confidence 55555
No 3
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A
Probab=98.39 E-value=7.8e-07 Score=61.26 Aligned_cols=72 Identities=21% Similarity=0.355 Sum_probs=59.2
Q ss_pred eEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCCeEEEEEEeeccCCCCCC
Q psy12987 8 RVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSAFVEVFVAKSSNPDDY 81 (82)
Q Consensus 8 ~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gSAfiEvlVg~s~~~~~f 81 (82)
.|+..||.|+.|+++|+++++....|.+. |.....++++|.++..|.+|.|=-++--=++|.++..+.|++|
T Consensus 24 ~v~~ass~~~~~~~~~~iDgn~~T~W~t~--g~~Pq~i~Idf~k~~~is~~~i~~~~vk~~~ie~s~d~~p~~w 95 (153)
T 1tvg_A 24 EVILATSSDEKHPPENIIDGNPETFWTTT--GMFPQEFIICFHKHVRIERLVIQSYFVQTLKIEKSTSKEPVDF 95 (153)
T ss_dssp EEECCSCCCTTSCGGGGGSSCTTCCEECC--SCSSEEEEEEEEEEEEEEEEEEEEESEEEEEEEEECSSSSCCC
T ss_pred EEEEecccCcccCHHHcCcCCCCceEECC--CCCCcEEEEECCCceEEEEEEEEecCCEEEEEEEECCCCCcce
Confidence 58999999999999999999988899863 4445688899999999999999766766777777766555555
No 4
>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A*
Probab=97.26 E-value=0.0012 Score=41.60 Aligned_cols=53 Identities=21% Similarity=0.225 Sum_probs=41.7
Q ss_pred EEEeecCCCC---CccccccCCCCCCCeeecC---CCceeEEEEEecCCcceeeEEEeC
Q psy12987 9 VVSYSSEDPV---HKADNLLNPESTKKWKCKS---MGEKQAVAILQLSSQVQINGIDIG 61 (82)
Q Consensus 9 Vvs~SSEd~~---hpaeNLL~~~~~r~W~~~~---~Ge~~~~V~lql~~~~~I~~IDIG 61 (82)
-++.||+.+. |+++||++.+....|..+- ......++.+.|.++..|.+|.|-
T Consensus 13 ~~tass~~~~~~~~~~~~~~DG~~~t~w~s~~~~~~~~~~~~l~iDLg~~~~i~~v~~~ 71 (150)
T 2j1a_A 13 KITASSEETSGENAPASFASDGDMNTFWHSKWSSPAHEGPHHLTLELDNVYEINKVKYA 71 (150)
T ss_dssp EEEESCCBCSSSCBCGGGGSSSCTTCCEECCCSSSCCCSCCEEEEEEEEEEEEEEEEEE
T ss_pred EEEEecccCCCCCCcHHhcCcCCCCCcEEccccCCCCCCCeEEEEECCCCeEEeEEEEe
Confidence 3788999876 9999999988766776542 123456788889999999999994
No 5
>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A*
Probab=97.26 E-value=0.0021 Score=42.93 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=42.7
Q ss_pred EEeecCCCC----CccccccCCCCCCCeeecCC--CceeEEEEEecCCcceeeEEEeC
Q psy12987 10 VSYSSEDPV----HKADNLLNPESTKKWKCKSM--GEKQAVAILQLSSQVQINGIDIG 61 (82)
Q Consensus 10 vs~SSEd~~----hpaeNLL~~~~~r~W~~~~~--Ge~~~~V~lql~~~~~I~~IDIG 61 (82)
+++||+.+. ++++||++.+....|.+... +....++.+.|.++..|.+|.+-
T Consensus 32 vtAsS~~~~~~~~~~~~~a~DG~~~T~W~s~~~~~~~~p~~i~iDLg~~~~I~~v~~~ 89 (161)
T 4a41_A 32 ATATSEHPDVGNEGLAKFAIDGKENTIWHTKYNPVEELPQSITLELGGSYEINKFTYL 89 (161)
T ss_dssp EEESCCCCCSSSCCCGGGGGSSCTTCCEECCTTTTCCSCEEEEEEEEEEEEEEEEEEE
T ss_pred EEEeccCCCCCCCCcHHHcCcCCCCCeEEeCCCCCCCCCEEEEEEcCCCEEEeEEEEE
Confidence 788999887 99999999887778987631 23457888889999999999984
No 6
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A
Probab=97.12 E-value=0.0035 Score=41.17 Aligned_cols=53 Identities=21% Similarity=0.464 Sum_probs=41.8
Q ss_pred eEEEeecCCCC------CccccccCCCCCCCeeecCCC---ceeEEEEEecCCcceeeEEEe
Q psy12987 8 RVVSYSSEDPV------HKADNLLNPESTKKWKCKSMG---EKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 8 ~Vvs~SSEd~~------hpaeNLL~~~~~r~W~~~~~G---e~~~~V~lql~~~~~I~~IDI 60 (82)
.|+.+|||.+. ++++||++.+....|.+...+ ....++.+.|.++..|.+|.+
T Consensus 11 ~v~~~s~~~~~~~~~~~g~~~~a~DG~~~T~W~s~~~~~~~~~p~~i~vDLg~~~~i~~v~~ 72 (159)
T 3f2z_A 11 KIVSFTTEEASGEGSNNGHAKHLIDGNIETFWHSRWQGGSDPLPYEIIIDMNHRVKIAQIEL 72 (159)
T ss_dssp EEEEESCCCSSTTCTTSBSGGGGSSSCTTCCEECCCTTCCCCSCEEEEEEEEEEEEEEEEEE
T ss_pred EEEEecccccCCCCCCCCcHHhcCCCCCCCeEEcCCcCCCCCCCEEEEEECCCceEEEEEEE
Confidence 47778998765 589999998877789876321 244688888999999999998
No 7
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A
Probab=97.03 E-value=0.0012 Score=41.99 Aligned_cols=50 Identities=22% Similarity=0.293 Sum_probs=41.0
Q ss_pred EEEeecCC--CCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCC
Q psy12987 9 VVSYSSED--PVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGN 62 (82)
Q Consensus 9 Vvs~SSEd--~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN 62 (82)
-++.||.+ +.|.++|+++.+....|.+... .++.+.|.++..|.+|.|-.
T Consensus 12 ~vtASs~~~~~~~~~~~a~Dg~~~t~W~~~~~----~~l~vDLg~~~~v~~v~i~~ 63 (145)
T 2jda_A 12 AVTASGYDSEKGHVPANIADGDVKTRWAASGE----SWVQLELDKEQSIENILIVP 63 (145)
T ss_dssp EEEESCCBTTTTBCGGGGGSSCTTCCEEEESS----EEEEEEEEEEEEEEEEEEEE
T ss_pred EEEEeecccCCCCCchhcccCCCCCeECCCCC----eeEEEECCCceEEEEEEEEe
Confidence 35677775 7899999999887778997632 77888899999999999864
No 8
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron}
Probab=96.93 E-value=0.0069 Score=40.39 Aligned_cols=54 Identities=17% Similarity=0.377 Sum_probs=42.1
Q ss_pred eEEEeecCCCCC------ccccccCCCCCCCeeecCCC---ceeEEEEEecCCcceeeEEEeC
Q psy12987 8 RVVSYSSEDPVH------KADNLLNPESTKKWKCKSMG---EKQAVAILQLSSQVQINGIDIG 61 (82)
Q Consensus 8 ~Vvs~SSEd~~h------paeNLL~~~~~r~W~~~~~G---e~~~~V~lql~~~~~I~~IDIG 61 (82)
.|+.+|||.+.+ +++||++.+....|.+.-.+ ....++.+.|.++..|.+|.+-
T Consensus 21 ~v~~~s~~~~~~~~~~~g~~~~a~DG~~~T~W~s~~~~~~~~~p~wi~vDLg~~~~i~~v~~~ 83 (169)
T 3ggl_A 21 EVLSFTTQEASGEGAGNGLAKCLIDGDTETFWHAKWQGGSDPLPYDIVIDMKQNIQIAQVELL 83 (169)
T ss_dssp EEEEESCCCSSSSCSSCBSGGGGGSSCSSCCEECCCSSCCCCSCEEEEEEEEEEEEEEEEEEE
T ss_pred EEEEecccccCCCccCCCcHHhcCCCCCCCceEccCcCCCCCCCEEEEEECCCcEEEeEEEEE
Confidence 477899998776 79999998877788865211 2346788889999999999883
No 9
>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, BTR319D.BT_411; 3.00A {Bacteroides thetaiotaomicron}
Probab=96.36 E-value=0.021 Score=39.37 Aligned_cols=68 Identities=9% Similarity=0.153 Sum_probs=49.1
Q ss_pred eEEEeecCCCC---------CccccccCCCCCCCeee--cCCCceeEEEEEecCCcceeeEEEeC----------CCCeE
Q psy12987 8 RVVSYSSEDPV---------HKADNLLNPESTKKWKC--KSMGEKQAVAILQLSSQVQINGIDIG----------NEFSA 66 (82)
Q Consensus 8 ~Vvs~SSEd~~---------hpaeNLL~~~~~r~W~~--~~~Ge~~~~V~lql~~~~~I~~IDIG----------N~gSA 66 (82)
.|++||||.+. ||++||++.+...-|.+ ...+..-..+.+.|.++..|.+|.+- |..--
T Consensus 19 ~v~~~sSe~~~~~~~~~~~G~~~~~liDgn~~T~Wht~w~~~~~~P~~itIDLg~~~~v~~~~~~~r~~~~~~~~~g~ik 98 (172)
T 3hnm_A 19 SVIDFNNCCTQDGGWYLNMGWGVESLIDNNPGTQWLCRWDVKEPLPYYFVFDMGKEYTLFRFGFANPVAPAAHVWAGTSK 98 (172)
T ss_dssp CEEEESCCGGGSCHHHHTTSCSGGGGSSSCTTSCEECCCSSCCCSCEEEEEEEEEEEEEEEEEEECCCSSCTTSTTCCEE
T ss_pred EEEEcCCcccCCCCcccccCccHHHcCCCCCCCeEEecCCCCCCCCEEEEEECCCceEEeEEEEEecCCCCcccCCCCeE
Confidence 37889998653 58999999887778877 32233557788889999999999982 33334
Q ss_pred EEEEEeecc
Q psy12987 67 FVEVFVAKS 75 (82)
Q Consensus 67 fiEvlVg~s 75 (82)
=.||.++..
T Consensus 99 ~~~I~~S~D 107 (172)
T 3hnm_A 99 AGYVEASID 107 (172)
T ss_dssp EEEEEEESS
T ss_pred EEEEEEEeC
Confidence 466666543
No 10
>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen, carbohydrate-binding module, sugar-binding protein; HET: GAL; 2.25A {Clostridium perfringens}
Probab=96.35 E-value=0.0077 Score=37.78 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=40.2
Q ss_pred EEeecCCCCCccccccCCCCCCCeeecCCC--ceeEEEEEecCCcceeeEEEeCCC
Q psy12987 10 VSYSSEDPVHKADNLLNPESTKKWKCKSMG--EKQAVAILQLSSQVQINGIDIGNE 63 (82)
Q Consensus 10 vs~SSEd~~hpaeNLL~~~~~r~W~~~~~G--e~~~~V~lql~~~~~I~~IDIGN~ 63 (82)
.+.||+...+|++|+|+.+....|..+-.+ ....++.+.|.++..|++|.+-..
T Consensus 18 asss~~~~~~~~~~~~Dg~~~t~w~~~w~~~~~~~~~l~vDLg~~~~i~~v~~~~~ 73 (143)
T 2v72_A 18 ASATSEEGQDPASSAIDGNINTMWHTKWNGSDALPQSLSVNLGKARKVSSIAITPR 73 (143)
T ss_dssp EEESSCBTTBCGGGGSSSCTTCCEECCTTSCSCSCEEEEEEEEEEEEEEEEEEECC
T ss_pred EEEecccCCChHHhccCCCCCCceecCCCCCCCCCEEEEEECCCCeEEeEEEEEec
Confidence 466777888999999998766567644111 245678888999999999999543
No 11
>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein; hydrolase, family 32 carbohydrate-binding module; HET: MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A*
Probab=96.24 E-value=0.0066 Score=41.32 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=51.0
Q ss_pred eeceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCCe---EEEEEEee
Q psy12987 5 KFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFS---AFVEVFVA 73 (82)
Q Consensus 5 ~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gS---AfiEvlVg 73 (82)
-+..-+..||+...++++|+.+++....|... .+....++.+.|.++..|.+|.|-.+.. .-.+|.|+
T Consensus 30 A~~k~ataSs~~~~~~a~~AvDGn~~T~W~s~-~~~~~~Wi~VDLg~~~~v~~v~i~~~~~~~~~~y~IevS 100 (161)
T 4a3z_A 30 AENKNVSGSNSQSGNPLSNITDGDLSSLWISD-NGAMPANATIDLEGNNFVDFLELHFEKEGFRFQFKVEVE 100 (161)
T ss_dssp TTTCCEEESCBCTTCCGGGGSSSCTTCCEEBG-GGCSSEEEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEE
T ss_pred cCCCceEEeCCcCCCChhhcCcCCCCCeEEcC-CCCCCeEEEEECCCcEEEeEEEEEECCCCceEEEEEEEE
Confidence 34556788888888999999999988899976 2334567777899999999999865432 23456655
No 12
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9
Probab=96.09 E-value=0.0046 Score=43.62 Aligned_cols=68 Identities=19% Similarity=0.252 Sum_probs=56.2
Q ss_pred ceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCC-------CeEEEEEEeeccC
Q psy12987 7 ARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNE-------FSAFVEVFVAKSS 76 (82)
Q Consensus 7 ~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~-------gSAfiEvlVg~s~ 76 (82)
....++||--+.+.++||++.+...-|++. |.+.-+|.|||.+...|+.|.|--. -=.-|+|.+|.+.
T Consensus 27 ~a~w~vSS~k~g~gv~~L~D~~~~TyWqSd--g~qpH~I~i~f~k~v~i~~l~i~vd~~~DeSYtPs~I~v~aG~~~ 101 (171)
T 1jhj_A 27 QAVWSLSSCKPGFGVDQLRDDNLETYWQSD--GSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNF 101 (171)
T ss_dssp GEEEEESCCBTTBSTHHHHSSCTTCCEECC--SSSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESST
T ss_pred CeEEEEEecCCCCChHHcCCCCCCeeEccC--CCCCeEEEEEECCCceEEEEEEEECCCCCCCCCcEEEEEEEeCCc
Confidence 456789998888999999998888899954 6678899999999999999988533 3366899999874
No 13
>1o59_A Allantoicase; YIR029W, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics, hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: b.18.1.22 b.18.1.22 PDB: 1sg3_A
Probab=95.93 E-value=0.035 Score=43.40 Aligned_cols=64 Identities=28% Similarity=0.303 Sum_probs=50.4
Q ss_pred eEEEeecCCCCCccccccCCCCCC----CeeecCC-Ccee-EEEEEecCC-cceeeEEEe------CCC-CeEEEEEEe
Q psy12987 8 RVVSYSSEDPVHKADNLLNPESTK----KWKCKSM-GEKQ-AVAILQLSS-QVQINGIDI------GNE-FSAFVEVFV 72 (82)
Q Consensus 8 ~Vvs~SSEd~~hpaeNLL~~~~~r----~W~~~~~-Ge~~-~~V~lql~~-~~~I~~IDI------GN~-gSAfiEvlV 72 (82)
.|+.||.|.=.+ ++|||+++..+ +|-+++- .... =+++++|-. |-.|..|+| ||+ .++=||-.-
T Consensus 218 ~vv~~SD~~fg~-~~NLl~Pg~g~~MgDGWETrRrR~pG~~DW~IvrLG~~~G~I~~ieVDTa~FkGN~P~~vsi~a~~ 295 (355)
T 1o59_A 218 VALKYSDQHFGS-VDNLLLPGRGHDMSDGWETKRSRQPGHTDWAVIQLGRESSFIEKIIVDTAHFRGNFPQFITVEGCL 295 (355)
T ss_dssp EEEEESCCSEEC-GGGGGCSSSCSSGGGSEECCCCCSTTCCEEEEEECSSCCSEEEEEEEECTTCSSSCCSEEEEEEEC
T ss_pred EEEEEecccccC-HHHccCCCccccccccceecccCCCCCccEEEEEccCCCcEEEEEEEECCcccCCCCCeEEEEEEe
Confidence 688999887765 79999987653 7888743 3344 789999997 999999999 898 777777654
No 14
>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9
Probab=95.77 E-value=0.013 Score=43.18 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=55.0
Q ss_pred ceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCCCC-------eEEEEEEeeccC
Q psy12987 7 ARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEF-------SAFVEVFVAKSS 76 (82)
Q Consensus 7 ~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~g-------SAfiEvlVg~s~ 76 (82)
..+.+.||--+.+.+++|++.+...=|+. +|.+..+|-|||.|-..|+.|-|==.. =.-|.|.+|.+.
T Consensus 58 ~A~WsvSS~K~g~gV~~L~D~s~~TyWQS--DG~qPH~ItI~f~k~v~I~~L~iyvD~~~DeSYtPs~I~V~aG~~~ 132 (221)
T 1gqp_A 58 LALWKPSSFKLGNPVDFALDDNYDTFWQS--DGGQPHQLDIMFSKRMDICVMAIFFSMIADESYAPSLVKVYAGHSP 132 (221)
T ss_dssp GSEEEESCCCTTCCGGGGSSSCTTCCEEC--CSSSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESST
T ss_pred ceEEEEecCCCcCCHHHhcCCCccceecc--CCCCCeEEEEEEcCCceEEEEEEEECCCCCCCCCCEEEEEEEeCCc
Confidence 34568999999999999999888889994 677889999999999999988764322 367777777663
No 15
>3lei_A Platelet aggregation factor SM-HPAF; lectin domain of lectinolysin, fucose, blood clotting, nicke; HET: FUC; 1.90A {Streptococcus mitis} PDB: 3leg_A* 3le0_A* 3lek_A*
Probab=95.54 E-value=0.018 Score=38.00 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=53.1
Q ss_pred ceeceEEEeecCCCCCccccccCCCCCCCeeec----CCCceeEEEEEecCCcceeeEEEeCCCCe-------EEEEEEe
Q psy12987 4 IKFARVVSYSSEDPVHKADNLLNPESTKKWKCK----SMGEKQAVAILQLSSQVQINGIDIGNEFS-------AFVEVFV 72 (82)
Q Consensus 4 i~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~----~~Ge~~~~V~lql~~~~~I~~IDIGN~gS-------AfiEvlV 72 (82)
+-+.+-++.||....++|+|+++++....|... ..++..-++.+.|.++..|.+|.|=|... .=.+|.|
T Consensus 12 lA~~k~ataSS~~~~~~a~~AvDG~~~t~W~~~~ct~t~~~~~~W~~VDLg~~~~v~~V~i~~~~d~~~~~r~~~~~I~v 91 (153)
T 3lei_A 12 IARGKQASQSSTAYGGAATRAVDGNVDSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKVKLYNRGDGNVANRLSNFDVVL 91 (153)
T ss_dssp TTTTCEEEESCCCTTCCGGGGGSSCCCCCGGGTCSCCCCSBTTCEEEEEEEEEEEEEEEEEEECCSTTCGGGSCSEEEEE
T ss_pred cCCCCCeeECCCcCCCCccccccCCCCCccccCccccCCCCCCCeEEEECCCceEEeEEEEEeCCCCcccccceeEEEEE
Confidence 345667888998888999999999988889741 24555667777899999999999944432 1356777
Q ss_pred ecc
Q psy12987 73 AKS 75 (82)
Q Consensus 73 g~s 75 (82)
|.+
T Consensus 92 s~~ 94 (153)
T 3lei_A 92 LNE 94 (153)
T ss_dssp ECT
T ss_pred ECC
Confidence 743
No 16
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=95.11 E-value=0.029 Score=44.29 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=44.0
Q ss_pred ceEEEeecCCC-CCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEe
Q psy12987 7 ARVVSYSSEDP-VHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 7 ~~Vvs~SSEd~-~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDI 60 (82)
..-|.+||+.. .|.++|+++++...-|.+. .+....+++|.|.+++.|..|-|
T Consensus 330 ~~~vtASS~~~~~~~~~~a~Dgd~~TyW~a~-~~~~~~wl~vDLg~~~~vn~V~l 383 (469)
T 3eyp_A 330 GAKVKATNVRGAKYSPEKMLDNEKNTYFAGK-DGEVKADIIFTLPKTIEFDCLMI 383 (469)
T ss_dssp TCEEEESSCCCGGGCGGGGGSCCSSCCEECC-TTCCCEEEEEEEEEEEEEEEEEE
T ss_pred CCceEEeeccCCCCChhhcccCCCCceEeCC-CCCCCcEEEEECCCCcEEeEEEE
Confidence 34567888766 8999999999988889877 55666788899999999999987
No 17
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*
Probab=94.91 E-value=0.021 Score=45.34 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=47.4
Q ss_pred EEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCC-------CCeEEEEEEee
Q psy12987 9 VVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGN-------EFSAFVEVFVA 73 (82)
Q Consensus 9 Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN-------~gSAfiEvlVg 73 (82)
-|.+||+. |.++|+++.+...-|.+. .|....+++|.|.+|+.|..|-|-- -.+--||+..+
T Consensus 360 ~vtaSs~~--~~~~~a~Dgn~~TyW~a~-~~~~~~~l~idLg~~~~~n~v~IqE~i~~gqRV~~y~Ve~~~d 428 (478)
T 3ues_A 360 EARTSSAS--AAAAHLVDGNRDTFWRPD-ADDAAPAITLTLPQPTTINAIVIEEAIEHGQRIEHLRVTGALP 428 (478)
T ss_dssp EEEESSCG--GGGGGGSSSCTTCCBCCC-TTCSSCEEEEEEEEEEEEEEEEEEECGGGCCCEEEEEEEEECT
T ss_pred ceEeeccc--cChhhcccCCCCceEeCC-CCCCCeeEEEECCCCcEEEEEEEeecccCCCceEEEEEEEEeC
Confidence 46678876 999999998877788877 6667788999999999999988641 13445666553
No 18
>1o59_A Allantoicase; YIR029W, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics, hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: b.18.1.22 b.18.1.22 PDB: 1sg3_A
Probab=94.60 E-value=0.097 Score=40.90 Aligned_cols=64 Identities=27% Similarity=0.407 Sum_probs=46.5
Q ss_pred ceEEEeecCCCCCccccccCCCC--------------CCCeeecCC-CceeEEEEEecCC-cceeeEEEe------CCC-
Q psy12987 7 ARVVSYSSEDPVHKADNLLNPES--------------TKKWKCKSM-GEKQAVAILQLSS-QVQINGIDI------GNE- 63 (82)
Q Consensus 7 ~~Vvs~SSEd~~hpaeNLL~~~~--------------~r~W~~~~~-Ge~~~~V~lql~~-~~~I~~IDI------GN~- 63 (82)
..|++||.|-=. +|+|||++.. +-+|-+.+- .+.-=+++++|-- |-.|.+||| ||+
T Consensus 44 g~vl~~sDe~Fa-~a~NLL~p~~p~~~~~~f~~~GkwmDGWETRR~R~~ghDW~IirLG~~pG~I~gveVDTa~F~GN~p 122 (355)
T 1o59_A 44 GQVVSFSDEWFA-SAENLIQPTAPIRDPTRFVHSGAWYDGWETRRHNEMEYDWVIIKMGVAAAHIIGGEIDTAFFNGNHA 122 (355)
T ss_dssp CEEEEESCCSSB-CGGGGGCSSCCCCC---------CCSSEECCSSCSSSCEEEEEECSSSCEEEEEEEEECTTCSSSBC
T ss_pred CEEEEEcccccc-cHHhcCCCCCccccCCccccCCCcccccccccCCCCCCCEEEEEcCCCCcEEEEEEEecCcccCCCC
Confidence 368889888666 9999999642 246887742 3345799999999 999999998 663
Q ss_pred CeEEEEEE
Q psy12987 64 FSAFVEVF 71 (82)
Q Consensus 64 gSAfiEvl 71 (82)
-.+=||..
T Consensus 123 p~vsvea~ 130 (355)
T 1o59_A 123 PFVSIEAL 130 (355)
T ss_dssp SEEEEEEE
T ss_pred CeEEEEEE
Confidence 34444443
No 19
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=94.53 E-value=0.21 Score=38.48 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=41.1
Q ss_pred EEEeecCCC---CCccccccCCCCCCCeeecCCC----ceeEEEEEecCCcceeeEEEeC
Q psy12987 9 VVSYSSEDP---VHKADNLLNPESTKKWKCKSMG----EKQAVAILQLSSQVQINGIDIG 61 (82)
Q Consensus 9 Vvs~SSEd~---~hpaeNLL~~~~~r~W~~~~~G----e~~~~V~lql~~~~~I~~IDIG 61 (82)
+..+||+.. .++++||++.+....|.....+ ....++.+.|.++..|.+|.+-
T Consensus 465 ~~~~ss~~~~~~~~~~~~a~DG~~~T~w~s~~~~~~~~~~~~~i~vDLg~~~~i~~v~~~ 524 (601)
T 1w8o_A 465 IADVDSEETAREDGRASNVIDGNPSTFWHTEWSRADAPGYPHRISLDLGGTHTISGLQYT 524 (601)
T ss_dssp EEEESCCCCSSSCCCGGGGGSSCTTCCEECCCSSTTCCCSCEEEEEEEEEEEEEEEEEEE
T ss_pred eeecccccccccCCccceeeCCCCCCcEecCCCCCCCCCCCeEEEEECCCcEEEeEEEEe
Confidence 556788765 7999999998877789765322 1356788889999999999984
No 20
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.02 E-value=0.09 Score=40.95 Aligned_cols=54 Identities=9% Similarity=0.220 Sum_probs=42.7
Q ss_pred EEEeecCCCCCccccccCCCCCCCeeecCCC----ceeEEEEEecCCcceeeEEEeCC
Q psy12987 9 VVSYSSEDPVHKADNLLNPESTKKWKCKSMG----EKQAVAILQLSSQVQINGIDIGN 62 (82)
Q Consensus 9 Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~G----e~~~~V~lql~~~~~I~~IDIGN 62 (82)
-++.||+...++++|+++.+....|.....+ ....++.+.|.++..|++|.+-.
T Consensus 32 ~~~ass~~~~~~~~~~~Dg~~~T~W~s~~~~~~~~~~~~~l~vDLg~~~~i~~v~~~~ 89 (656)
T 1k3i_A 32 AVTCDSAQSGNECNKAIDGNKDTFWHTFYGANGDPKPPHTYTIDMKTTQNVNGLSMLP 89 (656)
T ss_dssp EEEESCCCTTSCGGGGSSSCTTCCEECCCGGGCCCCSCEEEEEEEEEEEEEEEEEEEC
T ss_pred EEEEeccCCCCcHHhcCCCCCCCEEEeCCCCCCCCCCCceEEecCCCcEEEEEEEEEe
Confidence 4667888889999999998877789876331 23467778899999999999953
No 21
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}
Probab=93.90 E-value=0.12 Score=37.05 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=53.3
Q ss_pred ceeceEEEeecCCCCCccccccCCCCCCCeeec----CCCceeEEEEEecCCcceeeEEEeCCCCe-----EEEEEEeec
Q psy12987 4 IKFARVVSYSSEDPVHKADNLLNPESTKKWKCK----SMGEKQAVAILQLSSQVQINGIDIGNEFS-----AFVEVFVAK 74 (82)
Q Consensus 4 i~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~----~~Ge~~~~V~lql~~~~~I~~IDIGN~gS-----AfiEvlVg~ 74 (82)
+-+.+-+..||....++|+|+++++....|... ..++..-++.+.|.++..|.+|.|=|..+ .=.+|.||.
T Consensus 154 lA~~k~~taSS~~~~~~a~~AvDG~~~t~W~~~~c~~t~~~~~~W~~VDLg~~~~v~~V~i~~~d~~~~~~~~~~i~vs~ 233 (293)
T 3cqo_A 154 LALKGKATQSSLFESGIAYNAIDGNQANNWEMASCTHTKNTMDPWWRMDLSQTHRVFSVKVTNRDSFEKRINGAEIRIGD 233 (293)
T ss_dssp GGGGSEEEESCCCTTCCGGGGGSSCCCCSGGGTCCCCCCSEESCEEEEEEEEEEEEEEEEEECCSSSGGGGTTEEEEEES
T ss_pred ccCCcceecCCCCCCCCccccccCCCCCccccCccccCCCCCCCEEEEECCCeEEEeEEEEEccCccccccCCeEEEEec
Confidence 344556678888777999999999888789742 24445667888899999999999988721 125777775
Q ss_pred c
Q psy12987 75 S 75 (82)
Q Consensus 75 s 75 (82)
|
T Consensus 234 s 234 (293)
T 3cqo_A 234 S 234 (293)
T ss_dssp C
T ss_pred c
Confidence 4
No 22
>2j1v_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; HET: NAG GAL FUC; 1.45A {Streptococcus pneumoniae} PDB: 2j1r_A* 2j1t_A* 2j1u_A* 2j1s_A*
Probab=93.88 E-value=0.099 Score=34.76 Aligned_cols=72 Identities=11% Similarity=0.145 Sum_probs=53.8
Q ss_pred eeceEEEeecCCCCCccccccCCCCCCCeee---c-CCCceeEEEEEecCCcceeeEEEeCCCCe------EEEEEEeec
Q psy12987 5 KFARVVSYSSEDPVHKADNLLNPESTKKWKC---K-SMGEKQAVAILQLSSQVQINGIDIGNEFS------AFVEVFVAK 74 (82)
Q Consensus 5 ~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~---~-~~Ge~~~~V~lql~~~~~I~~IDIGN~gS------AfiEvlVg~ 74 (82)
-+.+-+..||....++|.|+.+++....|.. . ..++..-++.+.|.++..|.+|-|=|.+. .=.||.||.
T Consensus 19 Algk~at~SS~~~~~~a~~AvDGn~~t~w~~~sct~t~~~~~~W~~VDLg~~~~V~~V~i~~r~d~~~~r~~~~~I~v~~ 98 (151)
T 2j1v_A 19 AYAKPTTQSSVDYNGDPNRAVDGNRNGNFNSGSVTHTRADNPSWWEVDLKKMDKVGLVKIYNRTDAETQRLSNFDVILYD 98 (151)
T ss_dssp TTTCCEEESCCCTTCCGGGGGSSCCCCCGGGTCCCCCCSCTTCEEEEEEEEEEEEEEEEEEECCSSCGGGSCSEEEEEEC
T ss_pred cCCCCeeECCCCCCCCcCccEeCCCcCcccccccccCCCCCCCEEEEECCCCeEcCEEEEEcCCCccccccCCEEEEEEC
Confidence 3455678899888899999999998888973 2 24556667778899999999999966532 225777876
Q ss_pred cC
Q psy12987 75 SS 76 (82)
Q Consensus 75 s~ 76 (82)
+.
T Consensus 99 ~~ 100 (151)
T 2j1v_A 99 NN 100 (151)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 23
>2j22_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; 1.8A {Streptococcus pneumoniae}
Probab=93.82 E-value=0.15 Score=33.94 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=54.9
Q ss_pred ceeceEEEeecCCCCCccccccCCCCCCCeee---c-CCCceeEEEEEecCCcceeeEEEeCCCCe------EEEEEEee
Q psy12987 4 IKFARVVSYSSEDPVHKADNLLNPESTKKWKC---K-SMGEKQAVAILQLSSQVQINGIDIGNEFS------AFVEVFVA 73 (82)
Q Consensus 4 i~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~---~-~~Ge~~~~V~lql~~~~~I~~IDIGN~gS------AfiEvlVg 73 (82)
+-+.+-...||....++|.|+.+++....|.. . ..++..-++.+.|.++..|.+|-|=|... .=.||.||
T Consensus 15 lAlgk~a~~SS~~~~~~a~~AvDG~~~t~w~~~sct~T~~~~~~Ww~VDLg~~~~V~~V~i~~r~d~~~~r~~~~~I~vg 94 (148)
T 2j22_A 15 IALTKETRQSSTDYNGFSRLAVDGNKNGDYGHHSVTHTKEDSPSWWEIDLAQTEELEKLIIYNRTDAEIQRLSNFDIIIY 94 (148)
T ss_dssp TTTTCEEEESCCCTTCCGGGGGSSCCCCCGGGTCCCCCCSCTTCEEEEEEEEEEEEEEEEEEECCSSCGGGSEEEEEEEE
T ss_pred ccCCCceeECCCCCCCccCccEeCCCCCcccccceeccCCCCCCEEEEECCCCEEeeEEEEEecCCCcccccCCEEEEEE
Confidence 34556678899888899999999988878864 2 13455667777799999999999976532 34688888
Q ss_pred ccC
Q psy12987 74 KSS 76 (82)
Q Consensus 74 ~s~ 76 (82)
.|.
T Consensus 95 ~s~ 97 (148)
T 2j22_A 95 DSN 97 (148)
T ss_dssp CTT
T ss_pred eCC
Confidence 764
No 24
>1k12_A Lectin; beta barrel, protein carbohydrate complex, sugar binding protein; HET: FUC; 1.90A {Anguilla anguilla} SCOP: b.18.1.15
Probab=93.06 E-value=0.18 Score=33.46 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=52.3
Q ss_pred ceeceEEEeecCCCC----C-ccccccCCCCCCCeeec---C-CCceeEEEEEecCCcceeeEEEeCCCCe------EEE
Q psy12987 4 IKFARVVSYSSEDPV----H-KADNLLNPESTKKWKCK---S-MGEKQAVAILQLSSQVQINGIDIGNEFS------AFV 68 (82)
Q Consensus 4 i~~~~Vvs~SSEd~~----h-paeNLL~~~~~r~W~~~---~-~Ge~~~~V~lql~~~~~I~~IDIGN~gS------Afi 68 (82)
+-+.+-+.-||.... | +|+|+.+++....|... . .++..-++.+.|.++..|.+|-|=|.+. .=.
T Consensus 11 lA~gk~a~aSS~~~~~~~~~~~a~~AvDGn~~t~w~s~sc~~T~~~~~~W~~VDLg~~~~V~~V~i~~r~d~~~~r~~~~ 90 (158)
T 1k12_A 11 VAVRGKATQSAQLRGEHAANSEASNAIDGNRDSNFYHGSCTHSSGQANPWWRVDLLQVYTITSVTITNRGDCCGERISGA 90 (158)
T ss_dssp GGGGSEEEESCBCCSTTGGGCCGGGGGSSCCCCCGGGSCSCCBCSCSSCEEEEEEEEEEEEEEEEEEECSSSCTTTTTTC
T ss_pred ccCCCeeEECcccCCCCcccCCccccCcCCCCCccccccEecCCCCCCCEEEEECCCceEEeEEEEEeCCCcCccccCCE
Confidence 344556677887665 4 89999999988889632 1 2455667778899999999999966432 123
Q ss_pred EEEeeccC
Q psy12987 69 EVFVAKSS 76 (82)
Q Consensus 69 EvlVg~s~ 76 (82)
||.||.+.
T Consensus 91 ~i~v~~s~ 98 (158)
T 1k12_A 91 EINIGQHL 98 (158)
T ss_dssp EEEEESSC
T ss_pred EEEEEcCC
Confidence 88888763
No 25
>4gwi_A Lectinolysin, platelet aggregation factor SM-HPAF; cholesterol-dependent cytolysins, lewis antigens, F-type LEC glycan binding; HET: BDZ; 1.60A {Streptococcus mitis} PDB: 4gwj_A* 3lei_A* 3leg_A* 3le0_A* 3lek_A*
Probab=92.84 E-value=0.16 Score=34.01 Aligned_cols=72 Identities=14% Similarity=0.067 Sum_probs=53.1
Q ss_pred ceeceEEEeecCCCCCccccccCCCCCCCeeec----CCCceeEEEEEecCCcceeeEEEeCCCC-------eEEEEEEe
Q psy12987 4 IKFARVVSYSSEDPVHKADNLLNPESTKKWKCK----SMGEKQAVAILQLSSQVQINGIDIGNEF-------SAFVEVFV 72 (82)
Q Consensus 4 i~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~----~~Ge~~~~V~lql~~~~~I~~IDIGN~g-------SAfiEvlV 72 (82)
+-+.+-+..||....++|+|+.+++....|... ..++..-++.+.|.++..|.+|.|=|-+ -.=.||.+
T Consensus 12 lA~~k~ataSS~~~~~~a~~AvDG~~~t~w~~~sct~t~~~~~~W~~VDLg~~~~v~~V~i~nr~d~~~~~r~~~~~I~v 91 (153)
T 4gwi_A 12 IARGKQASQSSTAHGGAATRAVDGNVDSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKVKLYNRGDGNVANRLSNFDVVL 91 (153)
T ss_dssp TTTTCEEEESCCCTTCCGGGGGSSCCCCCGGGTCCCCCCSBTTCEEEEEEEEEEEEEEEEEEECCSTTCGGGSCSEEEEE
T ss_pred cCCCCceEEcCCCCCCCcceeEcCCCCCcccccccccCCCCCCCEEEEECCCCEEEEEEEEEcccCCchhhcccceEEEE
Confidence 345566788998888999999999988889731 2455566788889999999999996432 12256777
Q ss_pred ecc
Q psy12987 73 AKS 75 (82)
Q Consensus 73 g~s 75 (82)
|.+
T Consensus 92 ~s~ 94 (153)
T 4gwi_A 92 LNE 94 (153)
T ss_dssp ECT
T ss_pred ECC
Confidence 743
No 26
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}
Probab=91.63 E-value=0.25 Score=35.40 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=52.1
Q ss_pred ceeceEEEeecCCCC-Cc-cccccCCCCCCCeeecC----CCceeEEEEEecCCcceeeEEEeCCCCe------EEEEEE
Q psy12987 4 IKFARVVSYSSEDPV-HK-ADNLLNPESTKKWKCKS----MGEKQAVAILQLSSQVQINGIDIGNEFS------AFVEVF 71 (82)
Q Consensus 4 i~~~~Vvs~SSEd~~-hp-aeNLL~~~~~r~W~~~~----~Ge~~~~V~lql~~~~~I~~IDIGN~gS------AfiEvl 71 (82)
+-+.+-+.-||.... |+ |+|+.+++....|.... .++..-++.+.|.++..|.+|.|=|.+. .=.+|.
T Consensus 6 lA~~k~a~aSS~~~~~~~~a~~AvDG~~~t~W~s~~c~~t~~~~~~W~~VDLg~~~~v~~V~i~~r~d~~~~~~~~~~i~ 85 (293)
T 3cqo_A 6 VALRGKATQSARYLHTHGAAYNAIDGNRNSDFEAGSCTHTVEQTNPWWRVDLLEPYIVTSITITNRGDCCPERLNGVEIH 85 (293)
T ss_dssp GGGGSEEEESSBCSSTTCCGGGGGSSCCCCCGGGSCSCCBCSBSSCEEEEEEEEEEEEEEEEEECCSSSCGGGGTTEEEE
T ss_pred cCCCCceeECcCCCCCCCCcCccccCCCCCccCCCceecCCCCCCCEEEEECCCceEEEEEEEEeCCCCccccccCeEEE
Confidence 334555677777655 88 99999999888897542 2455567788899999999999987542 124777
Q ss_pred eecc
Q psy12987 72 VAKS 75 (82)
Q Consensus 72 Vg~s 75 (82)
|+.|
T Consensus 86 v~~s 89 (293)
T 3cqo_A 86 IGNS 89 (293)
T ss_dssp EESC
T ss_pred EecC
Confidence 7766
No 27
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A
Probab=90.90 E-value=0.66 Score=39.85 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=44.0
Q ss_pred ceeceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEe
Q psy12987 4 IKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 4 i~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDI 60 (82)
+-+..-+..||+...|+++|+.+++....|.+. . ...++.+.|.++..|++|.|
T Consensus 27 LA~gk~vTASS~~~g~~p~nAvDGn~~T~WsS~-~--~~qWLqVDLG~~~~V~~V~l 80 (914)
T 4a4a_A 27 ITEGVTVTAKGNTEGNTADLAIDGDLSTYWESS-N--DYKWIEVDLGGIYELSKIEI 80 (914)
T ss_dssp CCSSCEEEESCCCTTCCGGGGSSSCTTCCEECC-S--SCCEEEEEEEEEEEEEEEEE
T ss_pred ccCCCceEEeccCCCCcHHHeECCCCCCeEecC-C--CCceEEEECCCeEEEEEEEE
Confidence 344567889999888999999999988899877 2 22466667999999999999
No 28
>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: MSE; 1.55A {Clostridium perfringens}
Probab=90.31 E-value=0.4 Score=31.47 Aligned_cols=45 Identities=27% Similarity=0.349 Sum_probs=34.2
Q ss_pred cCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEe
Q psy12987 14 SEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 14 SEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDI 60 (82)
+.....+|+|+++.+....|.+...... +..+.|.++..|.+|.|
T Consensus 36 ~~~~~g~a~~aiDGn~~T~W~s~~~~~p--~~~VDLg~~~~V~~v~i 80 (149)
T 4a42_A 36 VTSNNSEANNLRDGNENTLWVPGQEEEK--SVTFDLSKEKDISAIDI 80 (149)
T ss_dssp ESSCGGGGGGGGSSCTTSCBCCCSCSSE--EEEEEEEEEEECCEEEE
T ss_pred EEcCCCChHhcEeCCCCCEEEcCCCCCC--eEEEECCCcEEEEEEEE
Confidence 3345679999999988778987633223 33777999999999999
No 29
>3bn6_A Lactadherin; anticoagulation, anti-coagulation, anticoagulant, anti- coagulant, membrane binding, phosphatidyl-serine binding; 1.67A {Bos taurus} PDB: 2pqs_A
Probab=86.09 E-value=0.96 Score=29.74 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=34.8
Q ss_pred EEeecCCC-------CCcccccc-CCC-CCCCeeecCCCceeEEEEEecCCcceeeEEEeC
Q psy12987 10 VSYSSEDP-------VHKADNLL-NPE-STKKWKCKSMGEKQAVAILQLSSQVQINGIDIG 61 (82)
Q Consensus 10 vs~SSEd~-------~hpaeNLL-~~~-~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIG 61 (82)
++.||+.. .|++.|+- ..+ ....|..+ .....-++.+.|.++..|++|-+=
T Consensus 17 itASS~~~~~~~~~~~~~p~~arL~~~~~~~~W~~~-~~~~~qwlqVDLg~~~~vt~v~tq 76 (158)
T 3bn6_A 17 ITASSYYKTWGLSAFSWFPYYARLDNQGKFNAWTAQ-TNSASEWLQIDLGSQKRVTGIITQ 76 (158)
T ss_dssp EEESCCCBGGGCGGGBCCGGGCBTTCCSSSCSEECS-SCCTTCCEEEEEEEEEEEEEEEEE
T ss_pred EEEecccccccccccccChhheEEcCCCCCCcccCC-CCCCCCEEEEeCCCceEEEEEEee
Confidence 56777744 78888874 543 45689866 332334666668899999999873
No 30
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}
Probab=85.57 E-value=0.79 Score=37.74 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=40.1
Q ss_pred EEeecCC---CCCccccccCCCCCCCeeecC---CCceeEEEEEecCCcceeeEEEeCC
Q psy12987 10 VSYSSED---PVHKADNLLNPESTKKWKCKS---MGEKQAVAILQLSSQVQINGIDIGN 62 (82)
Q Consensus 10 vs~SSEd---~~hpaeNLL~~~~~r~W~~~~---~Ge~~~~V~lql~~~~~I~~IDIGN 62 (82)
++.||+. ..+|++|+++++....|.+.- .+....++.+.|.++..|++|.+=+
T Consensus 601 ~tAsS~~~~~~~~~a~~aiDGn~~T~W~S~w~~~~~~~p~wl~VDLg~~~~V~~V~i~~ 659 (737)
T 2v5d_A 601 ITASSEETSGENAPASFASDGDMNTFWHSKWSSPAHEGPHHLTLELDNVYEINKVKYAP 659 (737)
T ss_dssp CEESCCBCSSSSBCGGGGGSSCSSCCEECCCSSSCCCCCCEEEEEEEEEEEEEEEEEEC
T ss_pred EEeeccccCCCCCCHHHccCCCCCCceeccccCCCCCCCeEEEEECCCcEEEEEEEEEe
Confidence 5677875 479999999988777787542 2334457777899999999998854
No 31
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A
Probab=79.55 E-value=1.5 Score=31.84 Aligned_cols=51 Identities=10% Similarity=0.064 Sum_probs=36.5
Q ss_pred EEEeecC-CCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEe
Q psy12987 9 VVSYSSE-DPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 9 Vvs~SSE-d~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDI 60 (82)
-++.||+ ++.|++.|+-..+....|..+. ....-++.+.|.++..|++|-+
T Consensus 22 ~itASS~~~~~~~p~~arl~~~~~~W~~~~-~~~~qwlqVDLg~~~~v~~v~t 73 (318)
T 2qqi_A 22 QITASSQYSTNWSAERSRLNYPENGWTPGE-DSYREWIQVDLGLLRFVTAVGT 73 (318)
T ss_dssp GEEESCCSCGGGCGGGGBTTCSSCCBCCSS-CCTTCCEEEEEEEEEEEEEEEE
T ss_pred HEEEeecCCCcCChhhhhhcCCCCeEcCCC-CCCCceEEEccCCcEEEEeeee
Confidence 3567776 5789999887765556797663 3333466666889999999987
No 32
>1czt_A Protein (coagulation factor V); membrane-binding, discoidin family, calcium- independent, blood clotting; 1.87A {Homo sapiens} SCOP: b.18.1.2 PDB: 1czs_A 1czv_A
Probab=78.91 E-value=2.7 Score=27.71 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=34.1
Q ss_pred EEeecCC-----CCCccccc-cCCC-CCCCeeecCCCceeEEEEEecCCcceeeEEEe
Q psy12987 10 VSYSSED-----PVHKADNL-LNPE-STKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 10 vs~SSEd-----~~hpaeNL-L~~~-~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDI 60 (82)
++.||.. ..|++.+. |..+ ....|..+ .....-++.+.|.++..|++|-+
T Consensus 18 itASS~~~~~~~~~~~p~~aRL~~~~~~~~W~a~-~~~~~qwLqVDLg~~~~Vt~v~t 74 (160)
T 1czt_A 18 ITASSFKKSWWGDYWEPFRARLNAQGRVNAWQAK-ANNNKQWLEIDLLKIKKITAIIT 74 (160)
T ss_dssp EEESCCCBCTTSCBCCGGGCBTTCCSSSCSEECS-SCSTTCCEEEEEEEEEEEEEEEE
T ss_pred EEEeeecccCCCcccCcccceecCCCCCCcccCC-CCCCCcEEEEeCCCcEEEEEEEE
Confidence 5677774 57888887 5543 34589765 33333466666889999999977
No 33
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation factor domain, heparin binding domain, angiogene protein binding-cytokine complex; 2.65A {Homo sapiens} PDB: 1kmx_A 1vgh_A 2vgh_A
Probab=77.28 E-value=2 Score=30.54 Aligned_cols=50 Identities=10% Similarity=0.060 Sum_probs=35.5
Q ss_pred EEeecC-CCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEe
Q psy12987 10 VSYSSE-DPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 10 vs~SSE-d~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDI 60 (82)
++.||+ ++.|.+.++-.......|.++ .....-++.+.|.++..|++|-+
T Consensus 22 ITASS~~~~~~~P~~ARLn~~~~aW~a~-~~d~~qWLQVDLg~~~~VtgV~t 72 (218)
T 4deq_A 22 ITASSQYSTNWSAERSRLNYPENGWTPG-EDSYREWIQVDLGLLRFVTAVGT 72 (218)
T ss_dssp EEESCCSCGGGCGGGCBTTCSSCCBCCS-SCSTTCCEEEEEEEEEEEEEEEE
T ss_pred EEEeccCCCCCChhHeEEcCCCCeECCC-CCCCCCeEEEeCCCcEEEEEEEE
Confidence 566776 678888888765545689876 33333466666889999999965
No 34
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=73.34 E-value=3.3 Score=32.32 Aligned_cols=49 Identities=14% Similarity=0.300 Sum_probs=29.5
Q ss_pred eecCCC--CCccccccCCCCCCCeeecC--CCce--eEEEEEecCCcceeeEEEeC
Q psy12987 12 YSSEDP--VHKADNLLNPESTKKWKCKS--MGEK--QAVAILQLSSQVQINGIDIG 61 (82)
Q Consensus 12 ~SSEd~--~hpaeNLL~~~~~r~W~~~~--~Ge~--~~~V~lql~~~~~I~~IDIG 61 (82)
|-+.|| .||++||.+.. .+=|+... .|.+ .+.|.|.|.+.-+|++|-|-
T Consensus 72 Cda~~p~~~Hp~~~~~D~~-~twWQS~~~~~g~~~~~V~itLdL~~~f~~t~v~l~ 126 (403)
T 2y38_A 72 CTAANSNKAHPVSNAIDGT-ERWWQSPPLSRGLEYNEVNVTLDLGQVFHVAYVLIK 126 (403)
T ss_dssp ---------CCGGGTTSSS-SCCEECCCSTTCSSTTCCEEEEEEEEEEEEEEEEEE
T ss_pred cCCCCccccCcHHHhccCC-ceeeccCCccCCCccccceeEEeCCCcEEEEEEEEE
Confidence 444554 69999999743 45678652 3443 57777778888888877654
No 35
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens}
Probab=70.39 E-value=4.8 Score=29.18 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=35.2
Q ss_pred EEEeecCCC--CCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEe
Q psy12987 9 VVSYSSEDP--VHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 9 Vvs~SSEd~--~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDI 60 (82)
=++.||+-. .|.+.++-..+....|..+. ....-++.+.|.++..|++|-+
T Consensus 22 ~itASS~~~~~~~~p~~arl~~~~~~W~~~~-~~~~qwlqvDLg~~~~vt~v~t 74 (325)
T 2qqj_A 22 QISASSTYSDGRWTPQQSRLHGDDNGWTPNL-DSNKEYLQVDLRFLTMLTAIAT 74 (325)
T ss_dssp GEEESCCCTTSSSCGGGCBTTCSSCCBCCSS-CSTTCCEEEEEEEEEEEEEEEE
T ss_pred CEEeccccCCCccCccceeecCCCCccccCc-CCcCccEEEeccceEEEEEEEe
Confidence 356777744 48888887655456797663 2223466666889999999987
No 36
>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical protein, regulatory protei apoptosis, cancer; NMR {Homo sapiens}
Probab=66.86 E-value=9.7 Score=26.45 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=39.6
Q ss_pred ceeceEEEeecCCCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCC
Q psy12987 4 IKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGN 62 (82)
Q Consensus 4 i~~~~Vvs~SSEd~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN 62 (82)
|.++.| .|=.|+..||..|.|+. .+.|.... -..|+=+-+-|..+++|++|-|-.
T Consensus 16 ID~~~v-~cLNe~~~~~~~~~l~~--~~~~leSD-~DeQLli~IPFt~~VKl~Si~i~~ 70 (171)
T 1wwy_A 16 INKAGC-ECLNESDEHGFDNCLRK--DTTFLESD-CDEQLLITVAFNQPVKLYSMKFQG 70 (171)
T ss_dssp EEEEEE-EEESCCSSSCSSTTSSS--SSCCBCCS-SCSCCEEEEEEEEEEEEEEEEECC
T ss_pred Cccccc-EEecCCCCCCHHHhhcc--CCCcCcCC-CCceEEEEeecCCcEEEEEEEEEC
Confidence 444444 56678889999999973 34687774 445555666699999999988853
No 37
>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: b.18.1.26
Probab=65.69 E-value=6.7 Score=26.95 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=39.4
Q ss_pred ceeceEEEeecCCCCCccccccCCC---CCCCeeecCCCceeEEEEEecCCcceeeEEEeC
Q psy12987 4 IKFARVVSYSSEDPVHKADNLLNPE---STKKWKCKSMGEKQAVAILQLSSQVQINGIDIG 61 (82)
Q Consensus 4 i~~~~Vvs~SSEd~~hpaeNLL~~~---~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIG 61 (82)
|.++.|. |=.|+..|++.|+|++. ..+.|... +-..|+=+-+-|..+++|++|-|-
T Consensus 20 Id~~~v~-cLNe~~~~~~~~v~k~~~r~~~~~~leS-D~DeQLli~IPFt~~VKl~Si~i~ 78 (161)
T 1xoy_A 20 IDWSGVE-CLNQSSSHSLPNALKQGYREDEGLNLES-DADEQLLIYIPFNQVIKLHSFAIK 78 (161)
T ss_dssp BCCSSCE-ESCSCTTSCSHHHHSTTSCCTTTCCEEC-SSCSSEEEEEEEEEEECEEEEEEE
T ss_pred CcccccE-EecCCCCCChhheechhhhccCCccCcC-CCCceEEEEeecCCcEEEEEEEEE
Confidence 4455544 44677779999999752 23478877 445566666669999999998775
No 38
>2vm9_A Discoidin-2, discoidin II; DDR, lectin, aggregation, cell adhesion; 1.75A {Dictyostelium discoideum} PDB: 2vmc_A* 2vmd_A* 2vme_A*
Probab=64.72 E-value=6.3 Score=28.20 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=35.5
Q ss_pred eEEEeecC-CCCCccccccCCCC----------CCCeeecCCCceeEEEEEecCCcceeeEEEe
Q psy12987 8 RVVSYSSE-DPVHKADNLLNPES----------TKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 8 ~Vvs~SSE-d~~hpaeNLL~~~~----------~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDI 60 (82)
.=++.||+ ++.|.+.+.-.... ...|..+. ....-++.+.|.++..|++|-+
T Consensus 16 ~~itASS~~~~~~~p~~aRLn~~~~~~~~~~~~~~~W~a~~-~d~~qwLqVDLg~~~~Vt~V~t 78 (257)
T 2vm9_A 16 LNLRSSTDYNADHGVKNSILNFSNSKDASRFDGSESWSSSV-LDKNQFIVAGSDSVKHFVAIST 78 (257)
T ss_dssp SEEEESCCSSGGGSGGGCBTTCCCCCCTTSCCCCSSEECSS-CSTTCCEEEEEEEEEEEEEEEE
T ss_pred cCEEEcccCCCCCCcCeEEeCCcccccccccCCCCeeeCCC-CCCCcEEeecCCCcEEEEEEEE
Confidence 34567777 78888887765432 35797663 2333466666899999999987
No 39
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=63.67 E-value=5.7 Score=29.95 Aligned_cols=50 Identities=10% Similarity=0.060 Sum_probs=34.2
Q ss_pred EEeecC-CCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEe
Q psy12987 10 VSYSSE-DPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 10 vs~SSE-d~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDI 60 (82)
+++||+ ++.|.++++-.......|..+ .....-++.+.|.++..|++|-+
T Consensus 155 itASS~~~~~~~p~~arl~~~~~~W~~~-~~~~~qwlqvDLg~~~~vt~v~t 205 (450)
T 2qqm_A 155 ITASSQYSTNWSAERSRLNYPENGWTPG-EDSYREWIQVDLGLLRFVTAVGT 205 (450)
T ss_dssp EEESCCSCGGGCGGGGBTTCSSCCBCCS-SCSTTCCEEEEEEEEEEEEEEEE
T ss_pred ccccccccccchhhccccccCCCCccCC-CCCCCceEEEcccceEEEEEEec
Confidence 456776 667888887765545579765 33333456666888999999887
No 40
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=59.29 E-value=13 Score=28.39 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=31.4
Q ss_pred CCCCccccccCCCC---CCCeeecC--CCc---eeEEEEEecCCcceeeEEEeC
Q psy12987 16 DPVHKADNLLNPES---TKKWKCKS--MGE---KQAVAILQLSSQVQINGIDIG 61 (82)
Q Consensus 16 d~~hpaeNLL~~~~---~r~W~~~~--~Ge---~~~~V~lql~~~~~I~~IDIG 61 (82)
+..||++|+.+... ..=|+... .|. ..+.|.|.|++.-+|++|-|-
T Consensus 67 ~~~Hp~~~~~D~~~~~~~TwWQS~~~~~~~~~~~~VtitLdL~~~f~~t~v~i~ 120 (375)
T 4aqt_A 67 HLQHGAAFLTDYNNQADTTWWQSQTMLAGVQYPNSINLTLHLGKAFDITYVRLK 120 (375)
T ss_dssp TTCCCGGGGSSCCCSSSCCCEECCCGGGTCSSSCCEEEEEEEEEEEEEEEEEEE
T ss_pred hhhCCHhheeccCCCCCCceEECCCccccCCCCcceEEEEcCCCeEEEEEEEEE
Confidence 34699999987432 23577651 122 356777888898899988775
No 41
>3hny_M Coagulation factor VIII; blood clotting, acute phase, blood coagulation, calcium, DIS mutation, disulfide bond, glycoprotein, hemophilia; 1.07A {Homo sapiens} SCOP: b.18.1.2 PDB: 3hnb_M 3hob_M 1d7p_M 1iqd_C 1cfg_A 1fac_A
Probab=58.67 E-value=12 Score=24.64 Aligned_cols=51 Identities=8% Similarity=0.163 Sum_probs=33.0
Q ss_pred EEeecCCC----CCccccccCC--CCCCCeeecCCCceeEEEEEecCCcceeeEEEeC
Q psy12987 10 VSYSSEDP----VHKADNLLNP--ESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIG 61 (82)
Q Consensus 10 vs~SSEd~----~hpaeNLL~~--~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIG 61 (82)
++.||+-. .|.+.+.-.. +....|.++. ....-++.+.|.++..|++|-+=
T Consensus 21 itASS~~~~~~~~~~p~~aRL~~~~~~~aW~a~~-~d~~qwLqVDLg~~~~VtgV~tq 77 (159)
T 3hny_M 21 ITASSYFTNMFATWSPSKARLHLQGRSNAWRPQV-NNPKEWLQVDFQKTMKVTGVTTQ 77 (159)
T ss_dssp EEESCCCBCSSCBCCGGGCBTTCCSSSCSBCCSS-CSTTCCEEEEEEEEEEEEEEEEE
T ss_pred EEEecccCCCccccChhhhhhhcCCCCCccCCCC-CCCCCeEEcccCCcEEEEEEEee
Confidence 56677643 5777776543 3345897663 33344666668899999999764
No 42
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*
Probab=57.22 E-value=14 Score=28.25 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=28.4
Q ss_pred cCCCCCccccccCC---CCCCCeeecC--CCc--eeEEEEEecCCcceee
Q psy12987 14 SEDPVHKADNLLNP---ESTKKWKCKS--MGE--KQAVAILQLSSQVQIN 56 (82)
Q Consensus 14 SEd~~hpaeNLL~~---~~~r~W~~~~--~Ge--~~~~V~lql~~~~~I~ 56 (82)
..+..||+++|.+. +..+=|+... .+. ..+.|.|.|.+.-.|+
T Consensus 68 ~p~~aHP~~~ltD~~~~~~~TwWQS~~~~~~~~p~~VnlTL~L~k~felt 117 (338)
T 3tbd_A 68 NPDLAHPPRLMFDKEEEGLATYWQSITWSRYPSPLEANITLSWNKTVELT 117 (338)
T ss_dssp STTTCCCGGGGSSCCCTTCCCCEEBCCSTTTTSCCCEEEEEEEEEEEEEC
T ss_pred CccccCCHHHhccCCCCCCCceeccCcccCCCCCccceEEEcCCCeEEEE
Confidence 34567999999984 3445778763 122 4567777777777776
No 43
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=55.42 E-value=10 Score=29.22 Aligned_cols=29 Identities=14% Similarity=0.323 Sum_probs=22.6
Q ss_pred CCeeecCCCceeEEEEEecCCcceeeEEEe
Q psy12987 31 KKWKCKSMGEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 31 r~W~~~~~Ge~~~~V~lql~~~~~I~~IDI 60 (82)
.-|+.. +|-..+.|.|.|.+.-+|++|-|
T Consensus 93 ~wwqs~-~~~~~v~itl~l~~~~~~~~v~~ 121 (525)
T 4aqs_A 93 IWWQSE-NGVENVTIQLDLEAEFHFTHLIM 121 (525)
T ss_dssp CCEECC-TTCCCCEEEEEEEEEEEEEEEEE
T ss_pred ccccCC-CCCcCeEEEEcCCCeEEEEEEEE
Confidence 357766 66677888888999888888866
No 44
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=53.25 E-value=19 Score=27.08 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=34.6
Q ss_pred EEeecC-CCCCccccccCCCCCCCeeec--CCCceeEEEEEecCCcceeeEEEe
Q psy12987 10 VSYSSE-DPVHKADNLLNPESTKKWKCK--SMGEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 10 vs~SSE-d~~hpaeNLL~~~~~r~W~~~--~~Ge~~~~V~lql~~~~~I~~IDI 60 (82)
+..||+ +..|++.|+-..+....|... ......-++.+.|-++..|++|-+
T Consensus 311 itASS~~~~~~~p~~arl~~~~~~W~~~~~~~~~~~qwLqVDLg~~~~vt~v~t 364 (450)
T 2qqm_A 311 ITSSNQGDRNWMPENIRLVTSRSGWALPPAPHSYINEWLQIDLGEEKIVRGIII 364 (450)
T ss_dssp EEETTTTSTTCCGGGGBTTTCSSCEEECCCSSCCCSCCEEEEEEEEEEEEEEEE
T ss_pred cccccccccccCchhhhccccCCcccccccccCCcCceEEEeCCCcEEEEEEEe
Confidence 455665 778888887665555679743 123333466777889999999987
No 45
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=49.26 E-value=22 Score=28.19 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=36.6
Q ss_pred EEEeecCCCCCccccccCCC--CCCCeeecCCCc---eeEEEEEecCCcceeeEEEe
Q psy12987 9 VVSYSSEDPVHKADNLLNPE--STKKWKCKSMGE---KQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 9 Vvs~SSEd~~hpaeNLL~~~--~~r~W~~~~~Ge---~~~~V~lql~~~~~I~~IDI 60 (82)
-++.||+...|.+.|+-..+ .+..|.++.... ..-++.+.|.++..|++|-+
T Consensus 345 ~i~asS~~~~~~p~~arl~~~~~~~~W~~~~~~~~~~~~qwlqVDLg~~~~vt~v~t 401 (647)
T 1sdd_B 345 QIQASEFWGYWEPKLARLNNGGSYNAWIAEKLSTEFNPEPWIQVDMQKEVLLTGIQT 401 (647)
T ss_dssp GEEESCCSTTCCGGGCBTTCCSSSCSEECSCCCCSSCCCSCEEEEEEEEEEEEEEEE
T ss_pred cccccccccccccceeeecCCCCcccccCCCCcccccccceEEeccCCeEEEEEEEE
Confidence 35678888889998887654 345898763321 13466666889999999987
No 46
>2wuh_A Discoidin domain receptor 2; receptor-peptide complex, transferase, nucleotide-binding, tyrosine-protein kinase; 1.60A {Homo sapiens} PDB: 2z4f_A
Probab=48.60 E-value=19 Score=24.18 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=33.0
Q ss_pred EEeecC-CCCCccccc-cCC-CCCCCeeecCCC--ce-eEEEEEecCCcceeeEEEe
Q psy12987 10 VSYSSE-DPVHKADNL-LNP-ESTKKWKCKSMG--EK-QAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 10 vs~SSE-d~~hpaeNL-L~~-~~~r~W~~~~~G--e~-~~~V~lql~~~~~I~~IDI 60 (82)
++.||+ ++.|.+.+. |.. +....|..+... .. .-++.+.|.++..|++|-+
T Consensus 34 itASS~~~~~~~p~~aRL~~~~~~~aW~a~~~~~~d~~~qWLQVDLg~~~~VtgV~t 90 (178)
T 2wuh_A 34 ITASSQWSESTAAKYGRLDSEEGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGT 90 (178)
T ss_dssp EEESCCSSGGGSGGGCBTTCCSTTSSBCCSSCBBTTBCCCCEEEEEEEEEEEEEEEE
T ss_pred EEEcCccCcccChhhheecCCCCCCeecCCcCCCCCCCCCEEEEecCCceEEeEEEE
Confidence 566777 577877776 433 234579765320 22 3466666889999999976
No 47
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A
Probab=47.07 E-value=21 Score=25.72 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=34.3
Q ss_pred EEeecC-CCCCccccccCCCCCCCeeec--CCCceeEEEEEecCCcceeeEEEe
Q psy12987 10 VSYSSE-DPVHKADNLLNPESTKKWKCK--SMGEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 10 vs~SSE-d~~hpaeNLL~~~~~r~W~~~--~~Ge~~~~V~lql~~~~~I~~IDI 60 (82)
++.||+ +..|++.|.-..+....|... ......-++.+.|.++..|++|-+
T Consensus 179 itASS~~~~~~~p~~arl~~~~~~W~~~~a~~~~~~qwLqVDLg~~~~Vt~V~t 232 (318)
T 2qqi_A 179 ITSSNQGDRNWMPENIRLVTSRSGWALPPAPHSYINEWLQIDLGEEKIVRGIII 232 (318)
T ss_dssp EEETTTTSTTCCGGGGBTTCCCCSCSBCCCTTCCSCCCEEEEEEEEEEEEEEEE
T ss_pred cccccccccccCchhhhhcccCCceeCcccccCCcCcEEEEeCCCceEEEEEEE
Confidence 456665 678888887655555679743 123334466666889999999876
No 48
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=42.54 E-value=30 Score=27.17 Aligned_cols=40 Identities=15% Similarity=0.288 Sum_probs=26.3
Q ss_pred CCCCccccccCCC---CCCCeeecCCCc-----eeEEEEEecCCcceee
Q psy12987 16 DPVHKADNLLNPE---STKKWKCKSMGE-----KQAVAILQLSSQVQIN 56 (82)
Q Consensus 16 d~~hpaeNLL~~~---~~r~W~~~~~Ge-----~~~~V~lql~~~~~I~ 56 (82)
+..||+++|.+.+ ..+=|+.. .+. ..+.|.|.|.+.-+|+
T Consensus 98 ~~aHp~~~~tD~~~~~~~twWQS~-~~~~~~~p~~V~itLdL~~~f~~t 145 (426)
T 3zyj_B 98 ELAHPPELMFDFEGRHPSTFWQSA-TWKEYPKPLQVNITLSWSKTIELT 145 (426)
T ss_dssp TTCCCGGGGGSCC----CCCEEBC-CCCSCSSCCCEEEEEEEEEEEEEC
T ss_pred cccCCHHHeecCCCCCCCceecCC-cccCCCCccceeEEEcCCCcEEEE
Confidence 4579999999853 34567866 332 2566666677777776
No 49
>2wn3_A Discoidin-1 subunit A; type-H lectin, cell adhesion, discoidin domain, lectin; HET: NGA GAL 1PG; 1.59A {Dictyostelium discoideum} PDB: 2w94_A* 2wn2_A* 2w95_A*
Probab=37.50 E-value=29 Score=24.77 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=33.6
Q ss_pred ceEEEeecC-CCCCccccccCCC---------CCCCeeecCCCceeEEEEEecCC--cceeeEEEeC
Q psy12987 7 ARVVSYSSE-DPVHKADNLLNPE---------STKKWKCKSMGEKQAVAILQLSS--QVQINGIDIG 61 (82)
Q Consensus 7 ~~Vvs~SSE-d~~hpaeNLL~~~---------~~r~W~~~~~Ge~~~~V~lql~~--~~~I~~IDIG 61 (82)
+.=++.||+ ++.|.+.+.-... ....|..+.. ...-++ .|-+ +..|++|-+=
T Consensus 15 d~~itASS~~~~~~~p~~aRLn~~~~~~~~~~~~~aW~a~~~-d~~qwL--DLg~~~~~~VtgV~tQ 78 (254)
T 2wn3_A 15 QCHLRTSTNYNGVHTQFNSALNYKNNGTNTIDGSEAWCSSIV-DTNQYI--VAGCEVPRTFMCVALQ 78 (254)
T ss_dssp CSEEEESCCSSTTSSGGGCBTTCCCCTTCGGGCCSSEECSSC-STTCCE--EEEEEEEEEEEEEEEE
T ss_pred CCCEEEcccCCCCCCcceEEeCCcccccccCCCCCeeeCCCC-CchheE--EcCCCeEEEEEEEEEe
Confidence 344667887 7889888876432 2457976632 222344 6777 8889888763
No 50
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A
Probab=37.16 E-value=48 Score=23.06 Aligned_cols=42 Identities=19% Similarity=0.501 Sum_probs=31.8
Q ss_pred CccccccCCC--CCCCeeecCCCceeEEEEEecCCcceeeEEEeCCC
Q psy12987 19 HKADNLLNPE--STKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNE 63 (82)
Q Consensus 19 hpaeNLL~~~--~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~ 63 (82)
.|...+|.++ ...=|-+. | .+.+|.++|.++..+++|-|-+-
T Consensus 67 ~~P~~~L~p~~~pG~CW~f~--g-~~g~l~I~Ls~~I~~~~VtieHi 110 (198)
T 4dxt_A 67 QSPRVILQPDVHPGNCWAFQ--G-PQGFAVVRLSARIRPTAVTLEHV 110 (198)
T ss_dssp CCGGGGGSSCCSTTCSEEEE--T-TCEEEEEEEEEEEEEEEEEEECC
T ss_pred CCchheEcCCCCCcceeecC--C-CcceeeeecCCeEEEEEEEEEcC
Confidence 5678888866 44589887 2 34678889999999999977554
No 51
>2kqv_A Non-structural protein 3; severe acute respiratory syndrome (SARS), nonstructural PROT macrodomains, RNA-binding proteins, structural genomics; NMR {Sars coronavirus} PDB: 2kqw_A
Probab=37.11 E-value=10 Score=27.48 Aligned_cols=59 Identities=24% Similarity=0.279 Sum_probs=14.4
Q ss_pred CCcceeceEEEeecCCC----------------CCccccccCCCCCCCeeecCCCceeE-EEEEecCCcceeeEEEeCC
Q psy12987 1 MAPIKFARVVSYSSEDP----------------VHKADNLLNPESTKKWKCKSMGEKQA-VAILQLSSQVQINGIDIGN 62 (82)
Q Consensus 1 Mp~i~~~~Vvs~SSEd~----------------~hpaeNLL~~~~~r~W~~~~~Ge~~~-~V~lql~~~~~I~~IDIGN 62 (82)
|-.++..+|++++|+|. .|=+++.+..++|+-|--. |+... -|++ +.|-..|-+-.+|+
T Consensus 102 mr~ltvP~v~~~~S~~~Vp~ynay~~sa~~T~e~~Fi~~v~~nGsY~dW~~v--G~rt~~gv~f-lKrG~tivY~~~~d 177 (198)
T 2kqv_A 102 MRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSYS--GQRTELGVEF-LKRGDKIVYHTLES 177 (198)
T ss_dssp HTTCCSCEEEECSSTTHHHHHHHHHTCC---------------------------------------------------
T ss_pred hhcccccEEEEecCcchhhhhhhhcccccCChHHHHHHHHHhcCCccceeEE--cceeeeceee-eecCCEEEEEecCC
Confidence 55788999999999884 2556788888899999866 54331 2221 33555555554443
No 52
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=36.37 E-value=23 Score=25.32 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=17.5
Q ss_pred cCCcceeeEEEeCCCCeEEEEEE
Q psy12987 49 LSSQVQINGIDIGNEFSAFVEVF 71 (82)
Q Consensus 49 l~~~~~I~~IDIGN~gSAfiEvl 71 (82)
|.+...|-+||||...+..+++.
T Consensus 9 ~~~~~~~vgiDiGt~~i~~~~~~ 31 (377)
T 2ych_A 9 FRPRVEALGLEIGASALKLVEVS 31 (377)
T ss_dssp --CCCCCEEEEECSSEEEEEEEE
T ss_pred hcCCCceEEEEeCCCeEEEEEEe
Confidence 45566788999999999988763
No 53
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=36.18 E-value=38 Score=25.51 Aligned_cols=50 Identities=12% Similarity=0.051 Sum_probs=30.9
Q ss_pred EEeecCC-C-CCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEe
Q psy12987 10 VSYSSED-P-VHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 10 vs~SSEd-~-~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDI 60 (82)
+++||+- + .|.+.+.-.......|..+.. ...-++.+.|.++..|++|-+
T Consensus 152 itaSS~~~~~~~~p~~arl~~~~~~W~~~~~-~~~~wlqVDLg~~~~vt~v~t 203 (460)
T 2qqo_A 152 ISASSTYSDGRWTPQQSRLHGDDNGWTPNLD-SNKEYLQVDLRFLTMLTAIAT 203 (460)
T ss_dssp EEESCCCTTSSSCGGGCBTTCSSCCBCCSSC-STTCCEEEEEEEEEEEEEEEE
T ss_pred eeeeeeccCcccChhhhhhcCCCceeeCCCC-CcceeEeccCCceEEEEEEEe
Confidence 5678773 3 466666554333347976532 233356666888889998875
No 54
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=34.59 E-value=26 Score=27.53 Aligned_cols=50 Identities=8% Similarity=0.037 Sum_probs=33.4
Q ss_pred EEeecC-CCCCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEe
Q psy12987 10 VSYSSE-DPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 10 vs~SSE-d~~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDI 60 (82)
++.||+ ++.|.+.+.=.......|..+.. ...-++.+.|-++..|++|-.
T Consensus 273 itASS~~~~~~~p~~aRLn~~~~aW~~~~~-~~~qwlqVDl~~~~~it~v~t 323 (577)
T 4gz9_A 273 ITASSQYGTNWSVERSRLNYPENGWTPGED-SYKEWIQVDLGLLRFVTAVGT 323 (577)
T ss_dssp EEESCCSCGGGCGGGCBTTCSSCCBCCSSC-CTTCCEEEEEEEEEEEEEEEE
T ss_pred cccCCcCcCCCCcccccccCCCCcccCCCC-CCCeEEEEcCCCEEEEEEEEc
Confidence 466777 77788877654333457987632 233355556889999999976
No 55
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum}
Probab=33.87 E-value=8.6 Score=34.69 Aligned_cols=51 Identities=24% Similarity=0.320 Sum_probs=0.0
Q ss_pred EEeecCCC------CCccccccCCCCCCCeeecC-CC--cee-EEEEEecCCcceeeEEEe
Q psy12987 10 VSYSSEDP------VHKADNLLNPESTKKWKCKS-MG--EKQ-AVAILQLSSQVQINGIDI 60 (82)
Q Consensus 10 vs~SSEd~------~hpaeNLL~~~~~r~W~~~~-~G--e~~-~~V~lql~~~~~I~~IDI 60 (82)
++.||+.+ .++++|+++.+....|-++- +. ..- .++.+.|.++..|.+|.+
T Consensus 1229 ATASSee~~~g~~geg~A~nAIDGD~~T~WHSaWs~ss~~~PgqWLqVDLGe~~tIsgf~Y 1289 (1376)
T 2zxq_A 1229 VATGSEEPTAGLPSEGPADLAQDGNDSTHWHTSWSENAVGNGTAWYQFNLNEPTTINGLRY 1289 (1376)
T ss_dssp -------------------------------------------------------------
T ss_pred EEEccccccccCCCCCCHHHcCcCCCCCeEEecccccCCCCCceEEEEEcCCcEEEEEEEE
Confidence 55666644 58999999988776776541 11 122 567788999999999876
No 56
>4ag4_A Epithelial discoidin domain-containing receptor 1; immune system-transferase complex; HET: NAG; 2.80A {Homo sapiens}
Probab=29.20 E-value=43 Score=25.43 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred EEeecC-CCCCccccccC--CCCCCCeeecCCC---ceeEEEEEecCCcceeeEE
Q psy12987 10 VSYSSE-DPVHKADNLLN--PESTKKWKCKSMG---EKQAVAILQLSSQVQINGI 58 (82)
Q Consensus 10 vs~SSE-d~~hpaeNLL~--~~~~r~W~~~~~G---e~~~~V~lql~~~~~I~~I 58 (82)
++.||+ ++.|.+.+.-. ......|.++ .. ...-++.+.|-++..|++|
T Consensus 22 ITASS~~~~~~~p~~ARLn~~~~~gaW~a~-~~~~~d~~qWLQVDLg~~~~VtgV 75 (351)
T 4ag4_A 22 ISASSSWSDSTAARHSRLESSDGDGAWCPA-GSVFPKEEEYLQVDLQRLHLVALV 75 (351)
T ss_dssp EEESCCSSGGGCGGGCBTTCCTTTSSBCCS-SCCCSSCCCCEEEEEEEEEEEEEE
T ss_pred eEEeCcCCCccChhhhhcccCCCCcccccc-ccccCCCCCEEEecCCCeEEEEEE
No 57
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A*
Probab=28.73 E-value=12 Score=31.04 Aligned_cols=44 Identities=7% Similarity=0.010 Sum_probs=27.2
Q ss_pred CCccccccCCCCCCCeeecCCC--ceeEEEEEecCCcceeeEEEeC
Q psy12987 18 VHKADNLLNPESTKKWKCKSMG--EKQAVAILQLSSQVQINGIDIG 61 (82)
Q Consensus 18 ~hpaeNLL~~~~~r~W~~~~~G--e~~~~V~lql~~~~~I~~IDIG 61 (82)
...++|++++|...-|.+.... ..--+|.+.|.+|..|++|.|=
T Consensus 602 ~g~~~~a~Dgd~~T~w~s~~~~~~~~g~wi~VdL~~~~~V~~I~i~ 647 (716)
T 2cho_A 602 IKNLPLQVKANRVLISPANEVVKWAAGNSVEIELDAIYPGENIQIN 647 (716)
T ss_dssp --CCCEEEETTEEEECC------------CEEEEEEEEEEEEEEEC
T ss_pred ccCchheeCCCcceEEECCCCccCCCCCEEEEEcCCcEEEEEEEEe
Confidence 3578899998876678765321 2234777779999999999774
No 58
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=28.67 E-value=59 Score=18.33 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=15.2
Q ss_pred CcceeeEEEeCCCCeEEEEEE
Q psy12987 51 SQVQINGIDIGNEFSAFVEVF 71 (82)
Q Consensus 51 ~~~~I~~IDIGN~gSAfiEvl 71 (82)
....|..|||-+. .+||||.
T Consensus 29 ~~~~IG~I~i~d~-~s~v~v~ 48 (76)
T 2g0c_A 29 SADDIGIITIMDN-ASYVEIL 48 (76)
T ss_dssp CGGGEEEEEECSS-CEEEEEC
T ss_pred ChhhccEEEEeCC-cEEEEEC
Confidence 4568999999655 6688875
No 59
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens}
Probab=27.41 E-value=62 Score=23.17 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=31.3
Q ss_pred EEeecC-CCCCccccccCCCCCCCeeecC--CCceeEEEEEecCCcceeeEEEe
Q psy12987 10 VSYSSE-DPVHKADNLLNPESTKKWKCKS--MGEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 10 vs~SSE-d~~hpaeNLL~~~~~r~W~~~~--~Ge~~~~V~lql~~~~~I~~IDI 60 (82)
++.||+ +..|.+.++-..+....|..+. .....-++.+.|.++..|++|-+
T Consensus 180 itASS~~~~~~~p~~arL~~~~~~W~~~~~~~~~~~qwLqVDLg~~~~Vt~V~t 233 (325)
T 2qqj_A 180 ISASSTQEYLWSPSAARLVSSRSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVII 233 (325)
T ss_dssp EEESCCCC-CCCGGGGBTTTCSSCBCCSSSSCCTTTCCEEEEEEEEEEEEEEEE
T ss_pred cccccccCcccCcchhhhccCCCccccccccCCCccceeEeccCCceeEEEEEe
Confidence 455665 5567777655544445797542 12233456666889999999977
No 60
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A
Probab=26.91 E-value=13 Score=32.19 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=0.0
Q ss_pred eceEEEeecCCC---CCccccccCCCCC---CCeeecCCCceeEEEEEecCCcceeeEEEeCCCCe
Q psy12987 6 FARVVSYSSEDP---VHKADNLLNPEST---KKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFS 65 (82)
Q Consensus 6 ~~~Vvs~SSEd~---~hpaeNLL~~~~~---r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN~gS 65 (82)
+..-+..||+-. ..+++.+++++-. .||.+. . ...++.|.|.++..|.+.-|=++|.
T Consensus 804 l~k~ataSs~~~~~~~e~p~kaVDG~~~~~stKWcs~-~--~~~wl~vDLg~~~tI~~~vv~haga 866 (937)
T 3gdb_A 804 PGATVIDSTFPKTEGGEGIEGMLNGTITSLSDKWSSA-Q--LSGSVDIRLTKSRTVVRWVMDHAGA 866 (937)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCCceEEecccccccccCHHHhcCCcccCCCCccccC-C--CCceEEEECCCcEEEeEEEEEeccc
Confidence 444556788742 3589999987543 599433 2 4568999999999999998877765
No 61
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=26.37 E-value=68 Score=24.84 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=31.9
Q ss_pred EEeecC-CC-CCccccccCCCCCCCeeecCCCceeEEEEEecCCcceeeEEEeCC
Q psy12987 10 VSYSSE-DP-VHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGN 62 (82)
Q Consensus 10 vs~SSE-d~-~hpaeNLL~~~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDIGN 62 (82)
++.||. ++ .|.+.+.-.......|..... ...-++.+.|.++..|++|-+-.
T Consensus 271 itaSS~~~~~~~~p~~arl~~~~~~W~~~~~-~~~qwlqVDLg~~~~vt~v~tqG 324 (579)
T 2qqk_A 271 ISASSTYSDGRWTPQQSRLHGDDNGWTPNLD-SNKEYLQVDLRFLTMLTAIATQG 324 (579)
T ss_dssp EEESCCCTTSCSCGGGCBTTCSSCCBCCSSC-STTCCEEEEEEEEEEEEEEEEEC
T ss_pred ceeeeeecccccCcchhhccCCCceecCCCC-CCCceEEeecceeEEEEEEEccC
Confidence 456666 33 577777655443457976532 22335666688888999887653
No 62
>2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate binding module, toxin, secreted, virulence, hydrolase, glycosidase; HET: MSE BTB; 1.45A {Clostridium perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A*
Probab=26.04 E-value=44 Score=22.63 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=25.2
Q ss_pred cccccCCCCC-CCeeec---CCCceeEEEEEecCCcceeeEE
Q psy12987 21 ADNLLNPEST-KKWKCK---SMGEKQAVAILQLSSQVQINGI 58 (82)
Q Consensus 21 aeNLL~~~~~-r~W~~~---~~Ge~~~~V~lql~~~~~I~~I 58 (82)
..+|.+.+.. ..|... ......-++.+.|.++..|++|
T Consensus 40 ~arL~dg~~~t~aW~a~~~~~~~~~~qwLQVDLg~~~~VtgV 81 (192)
T 2w1s_A 40 EANLLDGDDNTGVWYKTLNGDTSLAGEFIGLDLGKEIKLDGI 81 (192)
T ss_dssp GGGGSSSCTTCCEEEECHHHHCBCTTCEEEEEEEEEEEEEEE
T ss_pred HHheeCCCCCcCEEeCCcccccCCCCceEEEECCCeEEEEEE
Confidence 4677776543 389772 1223334777779999999998
No 63
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=21.80 E-value=82 Score=24.37 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=31.6
Q ss_pred EEeecC-CCCCccccccCCCCCCCeeecCC--CceeEEEEEecCCcceeeEEEe
Q psy12987 10 VSYSSE-DPVHKADNLLNPESTKKWKCKSM--GEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 10 vs~SSE-d~~hpaeNLL~~~~~r~W~~~~~--Ge~~~~V~lql~~~~~I~~IDI 60 (82)
++.||+ +..|.+.++-..+....|..+.+ ....-++.+.|.++..|++|-+
T Consensus 428 itASS~~~~~~~p~~arl~~~~~~W~~~~~~~~~~~qwLqVDLg~~~~Vt~V~t 481 (579)
T 2qqk_A 428 ISASSTQEYLWSPSAARLVSSRSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVII 481 (579)
T ss_dssp EEESCCCC--CCGGGGBTTTCSSCBCCSSTTCCTTTCCEEEEEEEEEEEEEEEE
T ss_pred eecccCCCcccCchhheecccCcCCcccccccCCccceEEEecCCceEEEEEEe
Confidence 455665 55677777655444557986521 2233466666889999999977
No 64
>3ktp_B Trinucleotide repeat-containing gene 6C protein; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding; 1.50A {Homo sapiens}
Probab=21.78 E-value=29 Score=16.93 Aligned_cols=9 Identities=11% Similarity=0.405 Sum_probs=6.8
Q ss_pred ccCCCCCCC
Q psy12987 74 KSSNPDDYK 82 (82)
Q Consensus 74 ~s~~~~~f~ 82 (82)
..+||++|+
T Consensus 3 ~~sWpPef~ 11 (22)
T 3ktp_B 3 SINWPPEFH 11 (26)
T ss_pred cccCCcccc
Confidence 467888885
No 65
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=21.58 E-value=87 Score=24.69 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=31.4
Q ss_pred EEeecCCC-----CCccccc-cCC-CCCCCeeecCCCceeEEEEEecCCcceeeEEEe
Q psy12987 10 VSYSSEDP-----VHKADNL-LNP-ESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 10 vs~SSEd~-----~hpaeNL-L~~-~~~r~W~~~~~Ge~~~~V~lql~~~~~I~~IDI 60 (82)
++.||... .|.+.+. |.. +....|.+. .....-++.+.|.++..|++|-+
T Consensus 505 itASS~~~~~~~~~~~p~~arL~~~g~~~~W~a~-~~~~~qwLqVDLg~~~~vt~v~t 561 (647)
T 1sdd_B 505 ITASSFKKSWWGNYWEPFLARLNAQGRVNAWQAK-ANNNNQWLQIDLLKIKKITAIVT 561 (647)
T ss_dssp EEESCCCEETTTEECCGGGCBSSCCSSSCSEECS-SCSSCCCEEEEEEEEEEEEEEEE
T ss_pred eeeccccccccccccCccccccccCCCcccccCC-CCCCCcEEEEeCCCceEEEEEEe
Confidence 45667643 5666665 443 334589655 33334466667889999999965
No 66
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=20.19 E-value=1e+02 Score=23.07 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=31.7
Q ss_pred EEeecC-CCCCccccccCCCCCCCeeecCC--CceeEEEEEecCCcceeeEEEe
Q psy12987 10 VSYSSE-DPVHKADNLLNPESTKKWKCKSM--GEKQAVAILQLSSQVQINGIDI 60 (82)
Q Consensus 10 vs~SSE-d~~hpaeNLL~~~~~r~W~~~~~--Ge~~~~V~lql~~~~~I~~IDI 60 (82)
++.||+ +..|.+.++-..+....|..+.+ ....-++.+.|.++..|++|-+
T Consensus 309 itASS~~~~~~~p~~arl~~~~~~W~~~~~~~~~~~qwLqVDLg~~~~Vt~V~t 362 (460)
T 2qqo_A 309 ISASSTQEYLWSPSAARLVSSRSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVII 362 (460)
T ss_dssp EEESCCCSSSCCGGGGBTTTCSSCBCCSSSSCCTTTCCEEEEEEEEEEEEEEEE
T ss_pred cccccCCCcccCcchhhhccCCCCcccccccCCCccceEEEcCCCceEEEEEEe
Confidence 455666 55666766544444457976521 2233366666889999999976
Done!