RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12987
         (82 letters)



>3lqc_A DNA repair protein XRCC1; allosteric disulfide, scaffolding
          protein, DNA repair, DNA D nucleus, phosphoprotein,
          polymorphism, DNA replication; HET: DNA; 2.35A {Homo
          sapiens} PDB: 3k75_B* 1xna_A 1xnt_A 3k77_A*
          Length = 189

 Score =  106 bits (266), Expect = 4e-31
 Identities = 35/80 (43%), Positives = 48/80 (60%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  I+   VVS SS+D  H A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct: 1  MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60

Query: 61 GNEFSAFVEVFVAKSSNPDD 80
          GN+ SAFVEV V  S+    
Sbjct: 61 GNDGSAFVEVLVGSSAGGAG 80


>2yc2_A IFT25, intraflagellar transport protein 25; transport protein,
          cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii}
          PDB: 2yc4_A
          Length = 139

 Score = 31.3 bits (70), Expect = 0.013
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 7  ARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSA 66
            VV  S  D     +N+L+ +    W   + G      +L+L S ++++ I   +    
Sbjct: 15 GLVVMASCSDERFPPENMLDGKDNTFW--VTTGMFPQEFVLRLESCIRVSKITTLSLNVR 72

Query: 67 FVEVFVAKSSNPDDYK 82
           + V       PD ++
Sbjct: 73 KLAVEKCDQDKPDQFE 88


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT,
          cytoplasmic vesicle, membrane, Ca structural protein;
          7.94A {Bos taurus}
          Length = 190

 Score = 28.6 bits (63), Expect = 0.16
 Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 5/20 (25%)

Query: 27 PESTKKWKCKSMGEKQAVAI 46
          PES +KW+     E+Q   +
Sbjct: 84 PESIRKWR-----EEQRKRL 98


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 24.9 bits (53), Expect = 3.3
 Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 7/27 (25%)

Query: 40 EKQAVAILQLSSQVQINGIDIGNEFSA 66
          EKQA+   +L + +++   D     SA
Sbjct: 18 EKQALK--KLQASLKLYADD-----SA 37


>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens}
          SCOP: b.18.1.9
          Length = 171

 Score = 24.2 bits (52), Expect = 6.4
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 9  VVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          V S SS  P    D L +      W  +S G +  +  +Q   +  +  + I
Sbjct: 29 VWSLSSCKPGFGVDQLRDDNLETYW--QSDGSQPHLVNIQFRRKTTVKTLCI 78


>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
           {Aeropyrum pernix}
          Length = 243

 Score = 24.0 bits (51), Expect = 6.8
 Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 6   FARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFS 65
            +   +      ++      + +   ++K + +       +  L  +V+  GI  G E  
Sbjct: 55  ESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVP-----TVAFLGGEVRWTGIPAGEEIR 109

Query: 66  AFVEVFVAKSSNP 78
           A VEV +  S + 
Sbjct: 110 ALVEVIMRLSEDE 122


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.312    0.127    0.358 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,154,290
Number of extensions: 49742
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 7
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.0 bits)