RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12987
         (82 letters)



>d1xnta_ b.18.1.8 (A:) N-terminal domain of xrcc1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 151

 Score =  112 bits (282), Expect = 2e-34
 Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 1  MAPIKFARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDI 60
          M  I+   VVS SS+D  H A+NLL  ++ +KW+    GEK    +LQL  + QI+ +DI
Sbjct: 1  MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDI 60

Query: 61 GNEFSAFVEVFVAKSS---NPDDYK 82
          GN+ SAFVEV V  S+      DY+
Sbjct: 61 GNDGSAFVEVLVGSSAGGAGEQDYE 85


>d1tvga_ b.18.1.9 (A:) Placental protein 25, pp25 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 136

 Score = 30.6 bits (68), Expect = 0.009
 Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 7  ARVVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSA 66
          + V+  +S D  H  +N+++      W   + G      I+     V+I  + I + F  
Sbjct: 10 SEVILATSSDEKHPPENIIDGNPETFW--TTTGMFPQEFIICFHKHVRIERLVIQSYFVQ 67

Query: 67 FVEVFVAKSSNPDDYK 82
           +++  + S  P D++
Sbjct: 68 TLKIEKSTSKEPVDFE 83


>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the
          anaphase-promoting complex {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 161

 Score = 27.3 bits (60), Expect = 0.16
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 9  VVSYSSEDPVHKADNLLNPESTKKWKCKSMGEKQAVAILQLSSQVQINGIDIGNEFSA 66
          V S SS  P    D L +      W+    G +  +  +Q   +  +  + I  ++ +
Sbjct: 29 VWSLSSCKPGFGVDQLRDDNLETYWQS--DGSQPHLVNIQFRRKTTVKTLCIYADYKS 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.127    0.358 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 278,803
Number of extensions: 9105
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 6
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)