BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12992
(319 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q18DN4|HMU_HALWD Halomucin OS=Haloquadratum walsbyi (strain DSM 16790) GN=hmu PE=4
SV=1
Length = 9159
Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 18/157 (11%)
Query: 175 QRRKNDNKSQMGSGLEQSRRSD---NKSQMGSGLEQSRRSD---NKSQMGSGLEQSRRSD 228
Q DN S SG + S ++D N S SG + S ++D N S SG + S ++D
Sbjct: 8404 QNDDGDNSSNQDSGDDSSSQNDDGDNSSNQDSGDDSSSQNDDGDNSSNQDSGDDSSSQND 8463
Query: 229 NKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSD---NKSQMGSGLEQSRRSD---NKSQMG 282
+ S Q+ DN S SG + S ++D N S SG + S ++D N S
Sbjct: 8464 DGDDSSS---QNDDGDNSSNQDSGDDSSSQNDDGDNSSNQDSGDDSSSQNDDGDNSSNQD 8520
Query: 283 SGLEQSRRS---DNKSQMGSGLEQSRKSDNKSQMGSE 316
SG + S ++ DNK + + S+ + G E
Sbjct: 8521 SGDDSSSQNDDGDNKPNSAAAVGAESGSEMGGETGGE 8557
>sp|P04928|SANT_PLAFN S-antigen protein OS=Plasmodium falciparum (isolate NF7 / Ghana)
PE=4 SV=1
Length = 309
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 4/146 (2%)
Query: 175 QRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMG 234
+ RK+D + S ++R+SD + S ++ +SD S ++ +SD +
Sbjct: 117 EARKSDEAEALKSDEAEARKSDEAEALKSDEAEALKSDEAEARKSDEAEALKSDEAEALK 176
Query: 235 SGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNK 294
S ++R+SD S ++R+SD S ++ +SD S ++R+SD
Sbjct: 177 SDEAEARKSDEAEARKSDEAEARKSDEAEARKSDEAEALKSDEAEARKSDEAEARKSDEA 236
Query: 295 SQMGSGLEQSRKSDN----KSQMGSE 316
+ S ++RKSD KS+ G+E
Sbjct: 237 EALKSDEAEARKSDEAEARKSEAGTE 262
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 178 KNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGL 237
K+D + S ++R+SD + S ++R+SD + +SD + S
Sbjct: 104 KSDEAEALKSDEAEARKSDEAEALKSDEAEARKSDEAEAL--------KSDEAEALKSDE 155
Query: 238 EQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQM 297
++R+SD + S ++ +SD S ++R+SD S ++R+SD +
Sbjct: 156 AEARKSDEAEALKSDEAEALKSDEAEARKSDEAEARKSDEAEARKSDEAEARKSDEAEAL 215
Query: 298 GSGLEQSRKSD 308
S ++RKSD
Sbjct: 216 KSDEAEARKSD 226
Score = 35.8 bits (81), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 16/148 (10%)
Query: 169 FFIGLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSD 228
+G ++ K+D + +SD + S ++R+SD + S ++R+SD
Sbjct: 87 IIVGQDEAPKSDEAEAL--------KSDEAEALKSDEAEARKSDEAEALKSDEAEARKSD 138
Query: 229 NKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQS 288
+ +SD + S ++R+SD + S ++ +SD S ++
Sbjct: 139 EAEAL--------KSDEAEALKSDEAEARKSDEAEALKSDEAEALKSDEAEARKSDEAEA 190
Query: 289 RRSDNKSQMGSGLEQSRKSDNKSQMGSE 316
R+SD S ++RKSD + S+
Sbjct: 191 RKSDEAEARKSDEAEARKSDEAEALKSD 218
>sp|P21138|SERA_ENTHI Serine-rich 25 kDa antigen protein OS=Entamoeba histolytica PE=1
SV=1
Length = 233
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 53/126 (42%), Gaps = 20/126 (15%)
Query: 178 KNDNKSQMGSG----LEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQM 233
K DNK + S S + DNK + S S + DNK + S S + DNK +
Sbjct: 86 KPDNKPEASSSDKPEASSSDKPDNKPEASS----SDKPDNKPEASS----SDKPDNKPEA 137
Query: 234 GSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDN 293
S S + DNK + S S + DNK + S + S NK + S + S N
Sbjct: 138 SS----SDKPDNKPEASS----SDKPDNKPEASSTNKPEASSTNKPEASSTNKPEASSTN 189
Query: 294 KSQMGS 299
K + S
Sbjct: 190 KPEASS 195
Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 20/126 (15%)
Query: 194 RSDNKSQMGSG----LEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQM 249
+ DNK + S S + DNK + S S + DNK + S S + DNK +
Sbjct: 86 KPDNKPEASSSDKPEASSSDKPDNKPEASS----SDKPDNKPEASS----SDKPDNKPEA 137
Query: 250 GSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRKSDN 309
S S + DNK + S S + DNK + S + S NK + S + S N
Sbjct: 138 SS----SDKPDNKPEASS----SDKPDNKPEASSTNKPEASSTNKPEASSTNKPEASSTN 189
Query: 310 KSQMGS 315
K + S
Sbjct: 190 KPEASS 195
>sp|Q8IWN7|RP1L1_HUMAN Retinitis pigmentosa 1-like 1 protein OS=Homo sapiens GN=RP1L1 PE=1
SV=4
Length = 2480
Score = 38.9 bits (89), Expect = 0.052, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 53/104 (50%)
Query: 202 GSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDN 261
G LE+++ + + G LE+++ + + G LE+++ + + G LE+++ +
Sbjct: 1319 GVQLEETKTEEGLQEEGVQLEETKTEEGLQEEGVQLEETKTEEGLQEEGVQLEETKTEEG 1378
Query: 262 KSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSR 305
+ G LE+++ + + G LE+++ + + G LE ++
Sbjct: 1379 LQEEGVQLEETKTEEGLQEEGVQLEETKTEEGLQEEGVQLEGTK 1422
Score = 37.7 bits (86), Expect = 0.11, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 51/102 (50%)
Query: 218 GSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDN 277
G LE+++ + + G LE+++ + + G LE+++ + + G LE+++ +
Sbjct: 1319 GVQLEETKTEEGLQEEGVQLEETKTEEGLQEEGVQLEETKTEEGLQEEGVQLEETKTEEG 1378
Query: 278 KSQMGSGLEQSRRSDNKSQMGSGLEQSRKSDNKSQMGSEFVG 319
+ G LE+++ + + G LE+++ + + G + G
Sbjct: 1379 LQEEGVQLEETKTEEGLQEEGVQLEETKTEEGLQEEGVQLEG 1420
Score = 37.7 bits (86), Expect = 0.13, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 52/103 (50%)
Query: 171 IGLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNK 230
+ LE+ + + + G LE+++ + + G LE+++ + + G LE+++ +
Sbjct: 1320 VQLEETKTEEGLQEEGVQLEETKTEEGLQEEGVQLEETKTEEGLQEEGVQLEETKTEEGL 1379
Query: 231 SQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSR 273
+ G LE+++ + + G LE+++ + + G LE ++
Sbjct: 1380 QEEGVQLEETKTEEGLQEEGVQLEETKTEEGLQEEGVQLEGTK 1422
>sp|P18127|ICEN_XANCT Ice nucleation protein OS=Xanthomonas campestris pv. translucens
GN=inaX PE=3 SV=1
Length = 1567
Score = 37.7 bits (86), Expect = 0.10, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 52/129 (40%)
Query: 186 GSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDN 245
G G Q+ SD+ G G Q+ R + G G + SD+ G G Q+ S++
Sbjct: 445 GYGSTQTSGSDSSLTAGYGSTQTARKGSDITAGYGSTGTAGSDSSLIAGYGSTQTAGSES 504
Query: 246 KSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSR 305
G G Q+ + D+ G G + D+ G G Q+ D+ G G Q+
Sbjct: 505 SLTAGYGSTQTAQQDSSLTTGYGSTSTAGHDSSLIAGYGSTQTAGYDSTLTAGYGSTQTA 564
Query: 306 KSDNKSQMG 314
+ D+ G
Sbjct: 565 QQDSSLTTG 573
Score = 35.8 bits (81), Expect = 0.43, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 52/129 (40%)
Query: 186 GSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDN 245
G G Q+ ++ G G Q+ R + G G + +D+ G G Q+ SD+
Sbjct: 397 GYGSTQTAGGESSLTAGYGSTQTARQGSDITAGYGSTGTAGADSTLIAGYGSTQTSGSDS 456
Query: 246 KSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSR 305
G G Q+ R + G G + SD+ G G Q+ S++ G G Q+
Sbjct: 457 SLTAGYGSTQTARKGSDITAGYGSTGTAGSDSSLIAGYGSTQTAGSESSLTAGYGSTQTA 516
Query: 306 KSDNKSQMG 314
+ D+ G
Sbjct: 517 QQDSSLTTG 525
Score = 35.0 bits (79), Expect = 0.65, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 54/138 (39%)
Query: 172 GLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKS 231
G Q ++ G G Q+ R + G G + +D+ G G Q+ SD+
Sbjct: 399 GSTQTAGGESSLTAGYGSTQTARQGSDITAGYGSTGTAGADSTLIAGYGSTQTSGSDSSL 458
Query: 232 QMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G G Q+ R + G G + SD+ G G Q+ S++ G G Q+ +
Sbjct: 459 TAGYGSTQTARKGSDITAGYGSTGTAGSDSSLIAGYGSTQTAGSESSLTAGYGSTQTAQQ 518
Query: 292 DNKSQMGSGLEQSRKSDN 309
D+ G G + D+
Sbjct: 519 DSSLTTGYGSTSTAGHDS 536
Score = 34.3 bits (77), Expect = 1.2, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 55/143 (38%)
Query: 172 GLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKS 231
G Q + + G G + +D+ G G Q+ SD+ G G Q+ R +
Sbjct: 415 GSTQTARQGSDITAGYGSTGTAGADSTLIAGYGSTQTSGSDSSLTAGYGSTQTARKGSDI 474
Query: 232 QMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G G + SD+ G G Q+ S++ G G Q+ + D+ G G +
Sbjct: 475 TAGYGSTGTAGSDSSLIAGYGSTQTAGSESSLTAGYGSTQTAQQDSSLTTGYGSTSTAGH 534
Query: 292 DNKSQMGSGLEQSRKSDNKSQMG 314
D+ G G Q+ D+ G
Sbjct: 535 DSSLIAGYGSTQTAGYDSTLTAG 557
Score = 33.1 bits (74), Expect = 3.0, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 54/138 (39%)
Query: 172 GLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKS 231
G Q +++ G G Q+ R + G G + +D+ G G Q+ ++
Sbjct: 351 GSTQTAGSESSLTAGYGSTQTARKGSDVTAGYGSTGTAGADSTLIAGYGSTQTAGGESSL 410
Query: 232 QMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G G Q+ R + G G + +D+ G G Q+ SD+ G G Q+ R
Sbjct: 411 TAGYGSTQTARQGSDITAGYGSTGTAGADSTLIAGYGSTQTSGSDSSLTAGYGSTQTARK 470
Query: 292 DNKSQMGSGLEQSRKSDN 309
+ G G + SD+
Sbjct: 471 GSDITAGYGSTGTAGSDS 488
Score = 32.3 bits (72), Expect = 4.4, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 55/143 (38%)
Query: 172 GLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKS 231
G Q + + G G + +D+ G G Q+ ++ G G Q+ R +
Sbjct: 367 GSTQTARKGSDVTAGYGSTGTAGADSTLIAGYGSTQTAGGESSLTAGYGSTQTARQGSDI 426
Query: 232 QMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G G + +D+ G G Q+ SD+ G G Q+ R + G G + S
Sbjct: 427 TAGYGSTGTAGADSTLIAGYGSTQTSGSDSSLTAGYGSTQTARKGSDITAGYGSTGTAGS 486
Query: 292 DNKSQMGSGLEQSRKSDNKSQMG 314
D+ G G Q+ S++ G
Sbjct: 487 DSSLIAGYGSTQTAGSESSLTAG 509
>sp|Q96L96|ALPK3_HUMAN Alpha-protein kinase 3 OS=Homo sapiens GN=ALPK3 PE=2 SV=2
Length = 1907
Score = 37.0 bits (84), Expect = 0.20, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
Query: 173 LEQRRKNDNKSQMGSGLEQSRRSDNKSQM-------GSGLEQSRRSDNKSQMGSGLEQSR 225
+E + + +G +++ ++D K Q+ G+ Q R+D K+Q+ +G ++S+
Sbjct: 792 METQEDGRTSANQRTGSKKNVQADGKIQVDGRTRGDGTQTAQRTRADRKTQVDAGTQESK 851
Query: 226 RSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGL 285
R + G+ R++ + + E+ + D K+Q G ++ RR Q G+
Sbjct: 852 RPQSDRSAQKGMMTQGRAETQLETTQAGEKIQE-DRKAQADKGTQEDRR----MQGEKGM 906
Query: 286 EQSRRSDNKSQMGSGLEQSRKSDNKSQMG 314
+ + + ++ + +E + + + +G
Sbjct: 907 QGEKGTQSEGSAPTAMEGQSEQEVATSLG 935
Score = 36.6 bits (83), Expect = 0.28, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 206 EQSRRSDNKSQMGSGLEQSRRSDNKSQM-------GSGLEQSRRSDNKSQMGSGLEQSRR 258
E R S N+ +G +++ ++D K Q+ G+ Q R+D K+Q+ +G ++S+R
Sbjct: 796 EDGRTSANQR---TGSKKNVQADGKIQVDGRTRGDGTQTAQRTRADRKTQVDAGTQESKR 852
Query: 259 SDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRKSDNKSQMGSE 316
+ G+ R++ + + E+ + D K+Q G ++ R+ + M E
Sbjct: 853 PQSDRSAQKGMMTQGRAETQLETTQAGEKIQE-DRKAQADKGTQEDRRMQGEKGMQGE 909
>sp|Q6DEU9|CTR9_XENTR RNA polymerase-associated protein CTR9 homolog OS=Xenopus tropicalis
GN=ctr9 PE=2 SV=1
Length = 1172
Score = 36.2 bits (82), Expect = 0.31, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 179 NDNKSQMGSGLEQ-SRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRR----SDNKSQM 233
N NKS G+G Q S +SD S + + RR D+ S S QSRR SDN+S+
Sbjct: 1069 NANKSGSGAGSPQKSPQSDGDSDNNAWARKRRRQDSGSDNDSA--QSRRSSGGSDNESRA 1126
Query: 234 GSGLEQSRRSDNKSQMGSGLEQSRRSDNKS-QMGSGLEQSRRSDNKS 279
S +S+R ++ G +R S N+S Q S E+S R + S
Sbjct: 1127 ASRSPESQRGSDRGSDNEG--SARASPNESEQEASNNEKSDRGSDDS 1171
Score = 35.4 bits (80), Expect = 0.61, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 213 NKSQMGSGLEQ-SRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRR----SDNKSQMGS 267
NKS G+G Q S +SD S + + RR D+ S S QSRR SDN+S+ S
Sbjct: 1071 NKSGSGAGSPQKSPQSDGDSDNNAWARKRRRQDSGSDNDSA--QSRRSSGGSDNESRAAS 1128
Query: 268 GLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRKSDNKSQMGSE 316
+S+R ++ G +R S N+S EQ ++ KS GS+
Sbjct: 1129 RSPESQRGSDRGSDNEG--SARASPNES------EQEASNNEKSDRGSD 1169
>sp|Q5NQ27|IF2_ZYMMO Translation initiation factor IF-2 OS=Zymomonas mobilis subsp.
mobilis (strain ATCC 31821 / ZM4 / CP4) GN=infB PE=3
SV=1
Length = 989
Score = 35.0 bits (79), Expect = 0.68, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 171 IGLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLE--QSRRSD 228
I + R + G+ +R S N+SQ G + R S NK+Q SG + Q R
Sbjct: 147 IKVTDRGAKKTTEKNGANASGNRPSGNRSQDNRGRQGGRGSQNKNQTRSGGQPRQPRTLA 206
Query: 229 NKSQMGSGLEQSR--RSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQM 281
++ Q+R R +S++ LE++RR +++ + + LE+ RR + K ++
Sbjct: 207 HRDLASRQELQARLLREAEESRL-QALEEARRREDRLKQEADLEEQRRIEEKRRL 260
>sp|O30611|ICEK_PSESX Ice nucleation protein OS=Pseudomonas syringae GN=inaK PE=3 SV=1
Length = 1148
Score = 33.9 bits (76), Expect = 1.5, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 51/129 (39%)
Query: 186 GSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDN 245
G G Q+ SD+ G G Q+ + + G G + SD+ G G Q+ SD+
Sbjct: 317 GYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDS 376
Query: 246 KSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSR 305
G G Q+ + + G G + D+ G G Q+ SD+ G G Q+
Sbjct: 377 SLTAGYGSTQTAQEGSNLTAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTA 436
Query: 306 KSDNKSQMG 314
+ + G
Sbjct: 437 QEGSNLTAG 445
Score = 32.7 bits (73), Expect = 3.3, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 53/136 (38%)
Query: 179 NDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLE 238
+D+ G G Q+ D+ G G Q+ + + G G + D+ G G
Sbjct: 262 SDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGVDSSLIAGYGST 321
Query: 239 QSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMG 298
Q+ SD+ G G Q+ + + G G + SD+ G G Q+ SD+ G
Sbjct: 322 QTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSLTAG 381
Query: 299 SGLEQSRKSDNKSQMG 314
G Q+ + + G
Sbjct: 382 YGSTQTAQEGSNLTAG 397
Score = 32.7 bits (73), Expect = 3.7, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 54/143 (37%)
Query: 172 GLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKS 231
G Q + + G G + SD+ G G Q+ D+ G G Q+ + +
Sbjct: 239 GSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNL 298
Query: 232 QMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G G + D+ G G Q+ SD+ G G Q+ + + G G + S
Sbjct: 299 TAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGS 358
Query: 292 DNKSQMGSGLEQSRKSDNKSQMG 314
D+ G G Q+ SD+ G
Sbjct: 359 DSSLIAGYGSTQTSGSDSSLTAG 381
Score = 32.3 bits (72), Expect = 4.8, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 54/138 (39%)
Query: 172 GLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKS 231
G Q +D+ G G Q+ + + G G + SD+ G G Q+ SD+
Sbjct: 319 GSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSL 378
Query: 232 QMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G G Q+ + + G G + D+ G G Q+ SD+ G G Q+ +
Sbjct: 379 TAGYGSTQTAQEGSNLTAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTAQE 438
Query: 292 DNKSQMGSGLEQSRKSDN 309
+ G G + +D+
Sbjct: 439 GSNLTAGYGSTGTAGADS 456
Score = 32.0 bits (71), Expect = 6.0, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 54/143 (37%)
Query: 172 GLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKS 231
G Q + + G G + D+ G G Q+ SD+ G G Q+ + +
Sbjct: 287 GSTQTAQEGSNLTAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNL 346
Query: 232 QMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G G + SD+ G G Q+ SD+ G G Q+ + + G G +
Sbjct: 347 TAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGV 406
Query: 292 DNKSQMGSGLEQSRKSDNKSQMG 314
D+ G G Q+ SD+ G
Sbjct: 407 DSSLIAGYGSTQTSGSDSALTAG 429
Score = 32.0 bits (71), Expect = 6.7, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 49/129 (37%)
Query: 172 GLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKS 231
G Q D+ G G Q+ + + G G + D+ G G Q+ SD+
Sbjct: 271 GSTQTSGGDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGVDSSLIAGYGSTQTSGSDSAL 330
Query: 232 QMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G G Q+ + + G G + SD+ G G Q+ SD+ G G Q+ +
Sbjct: 331 TAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSLTAGYGSTQTAQE 390
Query: 292 DNKSQMGSG 300
+ G G
Sbjct: 391 GSNLTAGYG 399
Score = 31.6 bits (70), Expect = 7.5, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%)
Query: 172 GLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKS 231
G Q D+ G G Q+ + + G G + SD+ G G Q+ D+
Sbjct: 223 GSTQTSGEDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSL 282
Query: 232 QMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G G Q+ + + G G + D+ G G Q+ SD+ G G Q+ +
Sbjct: 283 TAGYGSTQTAQEGSNLTAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTAQE 342
Query: 292 DNKSQMGSGLEQSRKSDN 309
+ G G + SD+
Sbjct: 343 GSNLTAGYGSTGTAGSDS 360
Score = 31.6 bits (70), Expect = 7.7, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 55/143 (38%)
Query: 172 GLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKS 231
G Q + + G G + SD+ G G Q+ SD+ G G Q+ + +
Sbjct: 335 GSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSLTAGYGSTQTAQEGSNL 394
Query: 232 QMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G G + D+ G G Q+ SD+ G G Q+ + + G G + +
Sbjct: 395 TAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGA 454
Query: 292 DNKSQMGSGLEQSRKSDNKSQMG 314
D+ G G Q+ S++ G
Sbjct: 455 DSSLIAGYGSTQTSGSESSLTAG 477
>sp|O33479|ICEV_PSESX Ice nucleation protein OS=Pseudomonas syringae GN=inaV PE=3 SV=1
Length = 1196
Score = 33.9 bits (76), Expect = 1.8, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 51/129 (39%)
Query: 186 GSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDN 245
G G Q+ SD+ G G Q+ + + G G + SD+ G G Q+ SD+
Sbjct: 365 GYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDS 424
Query: 246 KSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSR 305
G G Q+ + + G G + D+ G G Q+ SD+ G G Q+
Sbjct: 425 SLTAGYGSTQTAQEGSNLTAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTA 484
Query: 306 KSDNKSQMG 314
+ + G
Sbjct: 485 QEGSNLTAG 493
Score = 33.5 bits (75), Expect = 2.3, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 54/136 (39%)
Query: 179 NDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLE 238
+D+ G G Q+ D+ G G Q+ + + G G + +D+ G G
Sbjct: 310 SDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTSGYGSTGTAGADSSLIAGYGST 369
Query: 239 QSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMG 298
Q+ SD+ G G Q+ + + G G + SD+ G G Q+ SD+ G
Sbjct: 370 QTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSLTAG 429
Query: 299 SGLEQSRKSDNKSQMG 314
G Q+ + + G
Sbjct: 430 YGSTQTAQEGSNLTAG 445
Score = 33.1 bits (74), Expect = 2.5, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 55/143 (38%)
Query: 172 GLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKS 231
G Q + + G G + SD+ G G Q+ D+ G G Q+ + +
Sbjct: 287 GSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNL 346
Query: 232 QMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G G + +D+ G G Q+ SD+ G G Q+ + + G G + S
Sbjct: 347 TSGYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGS 406
Query: 292 DNKSQMGSGLEQSRKSDNKSQMG 314
D+ G G Q+ SD+ G
Sbjct: 407 DSSLIAGYGSTQTSGSDSSLTAG 429
Score = 32.7 bits (73), Expect = 4.1, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 55/143 (38%)
Query: 172 GLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKS 231
G Q + + G G + +D+ G G Q+ SD+ G G Q+ + +
Sbjct: 335 GSTQTAQEGSNLTSGYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNL 394
Query: 232 QMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G G + SD+ G G Q+ SD+ G G Q+ + + G G +
Sbjct: 395 TAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGV 454
Query: 292 DNKSQMGSGLEQSRKSDNKSQMG 314
D+ G G Q+ SD+ G
Sbjct: 455 DSSLIAGYGSTQTSGSDSALTAG 477
Score = 32.3 bits (72), Expect = 4.5, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 50/129 (38%)
Query: 172 GLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKS 231
G Q D+ G G Q+ + + G G + +D+ G G Q+ SD+
Sbjct: 319 GSTQTSGGDSSLTAGYGSTQTAQEGSNLTSGYGSTGTAGADSSLIAGYGSTQTSGSDSAL 378
Query: 232 QMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G G Q+ + + G G + SD+ G G Q+ SD+ G G Q+ +
Sbjct: 379 TAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSLTAGYGSTQTAQE 438
Query: 292 DNKSQMGSG 300
+ G G
Sbjct: 439 GSNLTAGYG 447
Score = 32.3 bits (72), Expect = 5.1, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 53/138 (38%)
Query: 172 GLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKS 231
G Q D+ G G Q+ + + G G + SD+ G G Q+ D+
Sbjct: 271 GSTQTSGEDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSL 330
Query: 232 QMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G G Q+ + + G G + +D+ G G Q+ SD+ G G Q+ +
Sbjct: 331 TAGYGSTQTAQEGSNLTSGYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQE 390
Query: 292 DNKSQMGSGLEQSRKSDN 309
+ G G + SD+
Sbjct: 391 GSNLTAGYGSTGTAGSDS 408
Score = 32.0 bits (71), Expect = 5.7, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 54/138 (39%)
Query: 172 GLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKS 231
G Q +D+ G G Q+ + + G G + SD+ G G Q+ SD+
Sbjct: 367 GSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSL 426
Query: 232 QMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G G Q+ + + G G + D+ G G Q+ SD+ G G Q+ +
Sbjct: 427 TAGYGSTQTAQEGSNLTAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTAQE 486
Query: 292 DNKSQMGSGLEQSRKSDN 309
+ G G + +D+
Sbjct: 487 GSNLTAGYGSTGTAGADS 504
Score = 31.6 bits (70), Expect = 9.1, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 55/143 (38%)
Query: 172 GLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKS 231
G Q + + G G + SD+ G G Q+ SD+ G G Q+ + +
Sbjct: 383 GSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSLTAGYGSTQTAQEGSNL 442
Query: 232 QMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G G + D+ G G Q+ SD+ G G Q+ + + G G + +
Sbjct: 443 TAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGA 502
Query: 292 DNKSQMGSGLEQSRKSDNKSQMG 314
D+ G G Q+ S++ G
Sbjct: 503 DSSLIAGYGSTQTSGSESSLTAG 525
>sp|P06620|ICEN_PSESY Ice nucleation protein OS=Pseudomonas syringae pv. syringae GN=inaZ
PE=1 SV=1
Length = 1200
Score = 33.1 bits (74), Expect = 2.6, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 53/135 (39%)
Query: 180 DNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQ 239
D+ G G Q+ SD+ G G Q+ + + G G + SD+ G G Q
Sbjct: 363 DSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQ 422
Query: 240 SRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGS 299
+ SD+ G G Q+ + + G G + D+ G G Q+ SD+ G
Sbjct: 423 TSGSDSSLTAGYGSTQTAQEGSILTAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGY 482
Query: 300 GLEQSRKSDNKSQMG 314
G Q+ + + G
Sbjct: 483 GSTQTAQEGSNLTAG 497
Score = 32.7 bits (73), Expect = 3.3, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 50/126 (39%)
Query: 179 NDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLE 238
+D+ G G Q+ D+ G G Q+ + + G G + D+ G G
Sbjct: 314 SDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGVDSSLIAGYGST 373
Query: 239 QSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMG 298
Q+ SD+ G G Q+ + + G G + SD+ G G Q+ SD+ G
Sbjct: 374 QTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSLTAG 433
Query: 299 SGLEQS 304
G Q+
Sbjct: 434 YGSTQT 439
Score = 32.7 bits (73), Expect = 3.3, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 54/143 (37%)
Query: 172 GLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKS 231
G Q + + G G + SD+ G G Q+ D+ G G Q+ + +
Sbjct: 291 GSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNL 350
Query: 232 QMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G G + D+ G G Q+ SD+ G G Q+ + + G G + S
Sbjct: 351 TAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGS 410
Query: 292 DNKSQMGSGLEQSRKSDNKSQMG 314
D+ G G Q+ SD+ G
Sbjct: 411 DSSLIAGYGSTQTSGSDSSLTAG 433
Score = 32.0 bits (71), Expect = 7.1, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%)
Query: 172 GLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKS 231
G Q D+ G G Q+ + + G G + SD+ G G Q+ D+
Sbjct: 275 GSTQTSGGDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSL 334
Query: 232 QMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G G Q+ + + G G + D+ G G Q+ SD+ G G Q+ +
Sbjct: 335 TAGYGSTQTAQEGSNLTAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTAQE 394
Query: 292 DNKSQMGSGLEQSRKSDN 309
+ G G + SD+
Sbjct: 395 GSNLTAGYGSTGTAGSDS 412
Score = 31.6 bits (70), Expect = 8.2, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 54/138 (39%)
Query: 172 GLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKS 231
G Q +D+ G G Q+ + + G G + SD+ G G Q+ SD+
Sbjct: 371 GSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSL 430
Query: 232 QMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G G Q+ + + G G + D+ G G Q+ SD+ G G Q+ +
Sbjct: 431 TAGYGSTQTAQEGSILTAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTAQE 490
Query: 292 DNKSQMGSGLEQSRKSDN 309
+ G G + +D+
Sbjct: 491 GSNLTAGYGSTGTAGADS 508
>sp|Q7M732|RTL1_MOUSE Retrotransposon-like protein 1 OS=Mus musculus GN=Rtl1 PE=2 SV=1
Length = 1744
Score = 32.0 bits (71), Expect = 6.1, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 195 SDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLE 254
S+ +S GS E S S+++S GS E S S+ +S GS E S S +S S E
Sbjct: 271 SNQESSDGSNHELSNGSNHESSFGSNPESSDVSNLESSGGSNQESSDGSQKESSYDSNPE 330
Query: 255 QSRRSDNKSQMGSGLEQSRRSDNKSQ 280
S DN +Q SDN +Q
Sbjct: 331 LS---DNSNQ--------ELSDNSNQ 345
Score = 32.0 bits (71), Expect = 6.1, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 211 SDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLE 270
S+ +S GS E S S+++S GS E S S+ +S GS E S S +S S E
Sbjct: 271 SNQESSDGSNHELSNGSNHESSFGSNPESSDVSNLESSGGSNQESSDGSQKESSYDSNPE 330
Query: 271 QSRRSDNKSQMGSGLEQSRRSDNKSQ 296
S DN +Q SDN +Q
Sbjct: 331 LS---DNSNQ--------ELSDNSNQ 345
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.125 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,363,214
Number of Sequences: 539616
Number of extensions: 4724087
Number of successful extensions: 39592
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 289
Number of HSP's that attempted gapping in prelim test: 25800
Number of HSP's gapped (non-prelim): 7991
length of query: 319
length of database: 191,569,459
effective HSP length: 117
effective length of query: 202
effective length of database: 128,434,387
effective search space: 25943746174
effective search space used: 25943746174
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)