Query psy12992
Match_columns 319
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 46136
Date Fri Aug 16 16:21:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12273 RCR: Chitin synthesis 96.0 0.0049 1.1E-07 48.2 2.4 36 153-188 3-38 (130)
2 PF12273 RCR: Chitin synthesis 90.4 0.16 3.5E-06 39.7 1.7 27 156-182 3-29 (130)
3 PHA02909 hypothetical protein; 87.2 1.3 2.7E-05 34.6 4.6 53 117-169 11-70 (72)
4 PRK13718 conjugal transfer pro 81.0 2.5 5.4E-05 34.1 4.0 32 152-183 46-77 (84)
5 TIGR01144 ATP_synt_b ATP synth 79.5 2.2 4.8E-05 33.1 3.2 19 141-159 3-21 (147)
6 PF07219 HemY_N: HemY protein 74.9 13 0.00028 28.2 6.2 42 130-174 3-44 (108)
7 TIGR00540 hemY_coli hemY prote 71.9 12 0.00027 33.1 6.2 29 129-157 27-55 (409)
8 PRK09173 F0F1 ATP synthase sub 69.6 5 0.00011 31.9 3.0 6 173-178 31-36 (159)
9 PRK10747 putative protoheme IX 68.9 16 0.00035 32.5 6.3 23 129-151 27-49 (398)
10 PF00430 ATP-synt_B: ATP synth 67.8 7 0.00015 29.0 3.3 15 154-168 2-16 (132)
11 PRK07353 F0F1 ATP synthase sub 67.8 6.2 0.00014 30.3 3.1 6 173-178 34-39 (140)
12 PRK06531 yajC preprotein trans 65.3 2.4 5.2E-05 34.5 0.4 29 161-189 9-37 (113)
13 MTH00025 ATP8 ATP synthase F0 64.9 10 0.00022 29.0 3.7 27 145-171 5-31 (70)
14 KOG0860|consensus 64.8 8.3 0.00018 32.2 3.4 21 150-170 94-114 (116)
15 PF06024 DUF912: Nucleopolyhed 64.8 3 6.5E-05 32.3 0.8 23 157-179 71-93 (101)
16 PF11100 TrbE: Conjugal transf 64.1 13 0.00028 29.0 4.1 31 150-180 36-66 (66)
17 PF00430 ATP-synt_B: ATP synth 63.3 5.5 0.00012 29.6 2.0 12 141-152 7-18 (132)
18 PRK14473 F0F1 ATP synthase sub 61.2 9.6 0.00021 30.4 3.1 6 173-178 37-42 (164)
19 PRK13453 F0F1 ATP synthase sub 61.2 9.3 0.0002 31.2 3.1 6 173-178 47-52 (173)
20 PF05393 Hum_adeno_E3A: Human 60.8 9.7 0.00021 31.3 3.1 25 154-178 37-61 (94)
21 PRK03598 putative efflux pump 59.8 4.1 8.9E-05 35.1 0.9 24 155-178 9-32 (331)
22 KOG1326|consensus 59.5 12 0.00026 40.4 4.3 22 150-171 1070-1091(1105)
23 PRK13461 F0F1 ATP synthase sub 59.2 11 0.00023 30.0 3.1 6 173-178 34-39 (159)
24 PF12729 4HB_MCP_1: Four helix 57.6 17 0.00037 25.9 3.7 15 151-165 6-20 (181)
25 PF04277 OAD_gamma: Oxaloaceta 56.5 39 0.00084 24.0 5.3 20 145-164 7-26 (79)
26 PRK09470 cpxA two-component se 56.3 15 0.00033 30.9 3.7 28 149-176 9-36 (461)
27 PF09680 Tiny_TM_bacill: Prote 55.1 10 0.00022 24.8 1.9 14 154-167 6-19 (24)
28 PF02167 Cytochrom_C1: Cytochr 54.0 24 0.00053 31.3 4.7 29 141-169 176-208 (219)
29 PRK05886 yajC preprotein trans 54.0 6.2 0.00013 32.0 0.9 23 165-187 15-37 (109)
30 PF02699 YajC: Preprotein tran 53.8 9.8 0.00021 28.5 1.9 28 162-189 10-37 (82)
31 KOG0812|consensus 53.3 14 0.00031 35.2 3.3 16 149-164 291-306 (311)
32 COG0768 FtsI Cell division pro 53.2 18 0.0004 34.6 4.1 30 148-177 12-41 (599)
33 PF09451 ATG27: Autophagy-rela 52.7 13 0.00029 32.4 2.8 13 85-97 154-166 (268)
34 TIGR03321 alt_F1F0_F0_B altern 52.6 15 0.00032 31.6 3.1 6 173-178 34-39 (246)
35 PF12297 EVC2_like: Ellis van 52.5 17 0.00038 35.8 3.8 25 154-178 71-95 (429)
36 PF04277 OAD_gamma: Oxaloaceta 52.0 18 0.0004 25.7 3.0 15 159-173 14-28 (79)
37 PF06480 FtsH_ext: FtsH Extrac 51.9 4.8 0.0001 27.8 0.0 11 158-168 5-15 (110)
38 PF10669 Phage_Gp23: Protein g 51.8 22 0.00047 30.1 3.9 22 148-169 12-33 (121)
39 PRK14472 F0F1 ATP synthase sub 51.5 17 0.00036 29.5 3.1 6 173-178 47-52 (175)
40 PF06305 DUF1049: Protein of u 51.4 11 0.00024 25.7 1.8 9 140-148 8-16 (68)
41 PF13889 Chromosome_seg: Chrom 51.0 14 0.00031 27.5 2.4 26 107-135 7-32 (56)
42 PRK07352 F0F1 ATP synthase sub 49.8 18 0.0004 29.2 3.1 6 173-178 48-53 (174)
43 PF06459 RR_TM4-6: Ryanodine R 49.4 26 0.00057 32.0 4.3 31 141-171 163-193 (274)
44 PRK13460 F0F1 ATP synthase sub 49.3 19 0.00042 29.2 3.1 6 173-178 45-50 (173)
45 PRK14475 F0F1 ATP synthase sub 48.7 12 0.00025 30.4 1.7 6 173-178 39-44 (167)
46 PRK14125 cell division suppres 48.4 29 0.00062 27.3 3.9 22 149-170 4-25 (103)
47 TIGR01732 tiny_TM_bacill conse 48.4 17 0.00037 24.1 2.1 13 154-166 8-20 (26)
48 TIGR01843 type_I_hlyD type I s 48.2 17 0.00038 31.0 2.8 17 155-171 8-24 (423)
49 PF10717 ODV-E18: Occlusion-de 47.5 17 0.00037 29.3 2.5 12 157-168 33-44 (85)
50 PRK08476 F0F1 ATP synthase sub 47.5 21 0.00046 28.5 3.1 6 173-178 36-41 (141)
51 PF12459 DUF3687: D-Ala-teicho 47.4 31 0.00068 24.5 3.5 28 146-175 8-35 (42)
52 TIGR00739 yajC preprotein tran 47.1 8.1 0.00018 29.4 0.6 24 166-189 15-38 (84)
53 TIGR02832 spo_yunB sporulation 46.5 16 0.00034 32.0 2.4 22 150-171 3-24 (204)
54 COG1862 YajC Preprotein transl 46.4 18 0.0004 28.8 2.5 25 156-180 10-35 (97)
55 PRK09174 F0F1 ATP synthase sub 46.3 22 0.00047 30.6 3.1 6 173-178 82-87 (204)
56 PF13789 DUF4181: Domain of un 46.3 35 0.00075 26.4 4.0 46 136-181 35-85 (110)
57 PF06422 PDR_CDR: CDR ABC tran 45.4 29 0.00063 26.7 3.4 12 133-147 45-56 (103)
58 PF11770 GAPT: GRB2-binding ad 45.2 17 0.00036 32.1 2.3 26 156-181 12-37 (158)
59 PF13908 Shisa: Wnt and FGF in 45.2 7.9 0.00017 31.4 0.3 14 162-175 92-107 (179)
60 PF06678 DUF1179: Protein of u 44.0 22 0.00047 29.5 2.6 17 163-179 16-32 (103)
61 MTH00216 ND1 NADH dehydrogenas 43.7 42 0.0009 30.5 4.7 6 145-150 3-8 (327)
62 PF11772 EpuA: DNA-directed RN 42.8 11 0.00025 26.9 0.8 14 160-173 3-16 (47)
63 PRK14401 membrane protein; Pro 42.7 48 0.001 29.5 4.7 55 132-186 83-147 (187)
64 PRK05585 yajC preprotein trans 42.6 12 0.00026 29.7 0.9 23 167-189 31-53 (106)
65 COG4395 Uncharacterized protei 42.2 49 0.0011 31.0 4.9 33 148-181 47-82 (281)
66 PRK13460 F0F1 ATP synthase sub 41.9 28 0.00061 28.3 3.0 10 158-167 23-32 (173)
67 CHL00019 atpF ATP synthase CF0 41.3 29 0.00062 28.5 3.0 6 173-178 53-58 (184)
68 PF13584 BatD: Oxygen toleranc 41.3 35 0.00077 30.9 3.8 21 153-173 427-447 (484)
69 PF08139 LPAM_1: Prokaryotic m 40.9 32 0.00068 22.3 2.5 16 148-163 5-20 (25)
70 PF06679 DUF1180: Protein of u 40.4 35 0.00077 29.3 3.5 28 150-177 94-121 (163)
71 PF03935 SKN1: Beta-glucan syn 39.9 26 0.00056 34.9 2.9 25 149-173 38-62 (504)
72 PF11395 DUF2873: Protein of u 39.3 70 0.0015 23.3 4.3 13 153-165 15-27 (43)
73 PRK06231 F0F1 ATP synthase sub 39.0 33 0.00072 29.2 3.1 6 173-178 77-82 (205)
74 PF05478 Prominin: Prominin; 38.8 40 0.00086 33.8 4.1 28 147-174 460-489 (806)
75 PHA02818 hypothetical protein; 38.7 59 0.0013 26.7 4.3 20 154-174 67-86 (92)
76 COG5341 Uncharacterized protei 38.6 16 0.00034 31.5 1.1 17 154-170 17-33 (132)
77 PRK12705 hypothetical protein; 38.5 38 0.00083 33.3 3.8 18 153-170 9-26 (508)
78 TIGR03142 cytochro_ccmI cytoch 38.5 32 0.00069 26.7 2.7 21 154-174 2-22 (117)
79 PF15202 Adipogenin: Adipogeni 37.7 59 0.0013 26.1 4.1 10 140-149 8-17 (81)
80 PF13129 DUF3953: Protein of u 36.8 29 0.00063 23.8 2.0 20 161-180 2-21 (42)
81 PF06366 FlhE: Flagellar prote 36.8 31 0.00066 28.0 2.4 23 79-101 26-54 (106)
82 PRK06568 F0F1 ATP synthase sub 36.3 37 0.0008 28.6 2.9 6 173-178 33-38 (154)
83 PF06084 Cytomega_TRL10: Cytom 35.9 24 0.00052 30.7 1.8 27 157-183 65-91 (150)
84 PHA02650 hypothetical protein; 35.7 54 0.0012 26.4 3.6 6 132-137 41-46 (81)
85 PRK10697 DNA-binding transcrip 35.6 19 0.00042 29.6 1.1 8 136-143 33-40 (118)
86 PF13131 DUF3951: Protein of u 35.6 38 0.00083 25.5 2.6 16 158-173 6-21 (53)
87 PF02932 Neur_chan_memb: Neuro 35.5 55 0.0012 23.0 3.3 11 155-165 223-233 (237)
88 PRK13453 F0F1 ATP synthase sub 35.4 41 0.00088 27.5 3.0 6 159-164 26-31 (173)
89 TIGR00998 8a0101 efflux pump m 35.2 48 0.001 28.0 3.5 14 155-168 10-23 (334)
90 TIGR01195 oadG_fam sodium pump 35.1 45 0.00098 25.3 3.0 14 160-173 18-31 (82)
91 PF09988 DUF2227: Uncharacteri 35.0 68 0.0015 27.5 4.4 7 134-140 80-86 (169)
92 PRK13454 F0F1 ATP synthase sub 35.0 41 0.00089 27.9 3.0 6 173-178 60-65 (181)
93 PRK10352 nickel transporter pe 34.8 56 0.0012 29.2 4.0 28 147-174 3-30 (314)
94 PF09889 DUF2116: Uncharacteri 34.7 63 0.0014 24.0 3.6 13 152-164 37-49 (59)
95 PF05781 MRVI1: MRVI1 protein; 34.4 25 0.00054 35.5 1.9 39 134-173 462-500 (538)
96 PF07946 DUF1682: Protein of u 34.2 35 0.00076 30.6 2.6 18 157-174 9-26 (321)
97 PF12606 RELT: Tumour necrosis 34.1 42 0.0009 24.4 2.5 9 161-169 10-18 (50)
98 PRK10476 multidrug resistance 34.1 26 0.00057 30.5 1.8 19 153-171 13-31 (346)
99 PRK10819 transport protein Ton 33.9 38 0.00082 30.0 2.8 19 145-163 4-22 (246)
100 PRK09471 oppB oligopeptide tra 32.4 67 0.0014 28.1 4.0 26 148-173 4-29 (306)
101 PF14348 DUF4400: Domain of un 32.2 1E+02 0.0022 25.5 4.9 44 135-178 91-135 (198)
102 PF10947 DUF2628: Protein of u 32.0 1.2E+02 0.0026 22.7 4.8 25 138-162 35-64 (108)
103 MTH00260 ATP8 ATP synthase F0 31.8 61 0.0013 23.3 3.0 19 154-172 13-31 (53)
104 PRK13428 F0F1 ATP synthase sub 31.4 47 0.001 31.4 3.1 6 173-178 30-35 (445)
105 TIGR02459 CbtB cobalt transpor 31.3 57 0.0012 24.8 2.9 14 162-175 27-40 (60)
106 PF03579 SHP: Small hydrophobi 31.2 95 0.0021 24.2 4.2 36 128-167 6-41 (64)
107 PF05478 Prominin: Prominin; 31.1 55 0.0012 32.8 3.7 21 155-175 424-444 (806)
108 smart00831 Cation_ATPase_N Cat 31.0 1.2E+02 0.0027 20.2 4.3 14 159-172 50-63 (64)
109 TIGR01006 polys_exp_MPA1 polys 30.8 1.1E+02 0.0024 25.0 4.9 30 142-171 9-38 (226)
110 COG0795 Predicted permeases [G 30.5 94 0.002 27.1 4.6 30 146-175 5-34 (364)
111 PF01529 zf-DHHC: DHHC palmito 30.3 68 0.0015 24.6 3.3 12 97-108 53-64 (174)
112 TIGR02789 nickel_nikB nickel A 30.3 74 0.0016 27.7 3.9 26 148-173 4-29 (314)
113 TIGR02876 spore_yqfD sporulati 29.8 75 0.0016 29.5 4.1 24 143-166 76-99 (382)
114 PF06898 YqfD: Putative stage 29.5 82 0.0018 29.0 4.2 16 149-164 85-100 (385)
115 PRK10914 dipeptide transporter 29.5 75 0.0016 28.6 3.9 27 147-173 3-29 (339)
116 COG3071 HemY Uncharacterized e 29.2 1.2E+02 0.0025 29.9 5.4 15 130-144 28-42 (400)
117 PRK13553 fumarate reductase cy 28.6 58 0.0013 30.0 3.1 30 149-178 210-239 (258)
118 PHA03030 hypothetical protein; 28.3 48 0.001 28.2 2.3 8 167-174 17-24 (122)
119 PHA02689 ORF051 putative membr 28.3 69 0.0015 27.5 3.3 21 156-176 34-54 (128)
120 PF11694 DUF3290: Protein of u 28.1 73 0.0016 26.7 3.4 9 160-168 52-60 (149)
121 KOG2431|consensus 28.1 63 0.0014 32.8 3.5 23 150-172 8-30 (546)
122 PF06637 PV-1: PV-1 protein (P 28.1 74 0.0016 31.8 3.9 13 148-160 23-35 (442)
123 MTH00186 ATP8 ATP synthase F0 28.1 79 0.0017 21.6 3.0 14 157-170 16-29 (52)
124 PF10694 DUF2500: Protein of u 28.0 20 0.00043 27.7 0.0 10 172-181 22-31 (110)
125 PRK15110 antimicrobial peptide 27.7 86 0.0019 27.9 3.9 26 148-173 4-29 (321)
126 PF05656 DUF805: Protein of un 27.5 1.6E+02 0.0034 21.8 4.7 11 171-181 63-73 (120)
127 MTH00147 ATP8 ATP synthase F0 27.2 84 0.0018 22.2 3.1 17 155-171 14-30 (51)
128 PF14812 PBP1_TM: Transmembran 27.0 3.9 8.5E-05 32.2 -4.0 13 151-163 65-77 (81)
129 COG4089 Predicted membrane pro 26.8 76 0.0016 29.5 3.5 7 153-159 16-22 (235)
130 PF03739 YjgP_YjgQ: Predicted 26.6 86 0.0019 26.5 3.6 22 150-171 4-25 (354)
131 PRK15133 microcin C ABC transp 26.6 90 0.002 28.9 4.0 26 148-173 4-29 (364)
132 PF05814 DUF843: Baculovirus p 26.5 76 0.0016 25.5 3.0 11 143-153 10-20 (83)
133 PF10694 DUF2500: Protein of u 26.4 22 0.00047 27.4 0.0 24 156-179 3-26 (110)
134 TIGR03794 NHPM_micro_HlyD NHPM 26.4 78 0.0017 28.5 3.5 12 161-172 29-40 (421)
135 TIGR03017 EpsF chain length de 26.2 1.2E+02 0.0026 27.0 4.6 10 147-156 9-18 (444)
136 COG2991 Uncharacterized protei 25.8 65 0.0014 25.8 2.5 26 153-179 3-28 (77)
137 PF03381 CDC50: LEM3 (ligand-e 25.7 1.4E+02 0.0031 26.5 5.0 21 129-149 229-250 (278)
138 COG2268 Uncharacterized protei 25.4 76 0.0017 32.1 3.5 16 157-172 16-31 (548)
139 PF01062 Bestrophin: Bestrophi 25.3 1.5E+02 0.0032 24.8 4.8 17 159-175 246-262 (293)
140 PF06682 DUF1183: Protein of u 25.0 56 0.0012 30.7 2.4 11 44-54 39-49 (318)
141 PF15183 MRAP: Melanocortin-2 24.8 1.5E+02 0.0032 24.4 4.4 46 132-185 31-77 (90)
142 PF11872 DUF3392: Protein of u 24.7 83 0.0018 25.8 3.0 17 161-177 89-105 (106)
143 KOG4753|consensus 24.6 76 0.0016 27.2 2.9 22 151-172 53-74 (124)
144 PF06143 Baculo_11_kDa: Baculo 24.5 1.3E+02 0.0027 24.0 3.9 7 165-171 53-59 (84)
145 COG3166 PilN Tfp pilus assembl 24.1 72 0.0016 28.1 2.8 52 138-189 4-60 (206)
146 PRK06569 F0F1 ATP synthase sub 24.1 81 0.0018 26.9 3.0 14 155-168 14-27 (155)
147 PRK15081 glutathione ABC trans 24.1 1.1E+02 0.0024 27.3 3.9 26 148-173 4-29 (306)
148 PF12158 DUF3592: Protein of u 24.0 86 0.0019 23.1 2.8 20 154-173 4-23 (148)
149 PF05568 ASFV_J13L: African sw 24.0 1.1E+02 0.0025 27.5 4.0 22 158-179 36-57 (189)
150 PF12127 YdfA_immunity: SigmaW 23.9 75 0.0016 30.6 3.0 10 170-179 40-49 (316)
151 PHA02973 hypothetical protein; 23.6 78 0.0017 26.3 2.7 10 178-187 21-30 (102)
152 PF05170 AsmA: AsmA family; I 23.5 67 0.0015 29.8 2.6 16 156-171 11-26 (604)
153 PRK09835 sensor kinase CusS; P 23.4 1.6E+02 0.0036 25.1 4.7 39 135-173 163-206 (482)
154 PF05399 EVI2A: Ectropic viral 23.2 97 0.0021 28.7 3.5 11 128-138 105-115 (227)
155 KOG3927|consensus 23.1 1.3E+02 0.0028 28.3 4.3 28 147-174 47-74 (300)
156 PHA02650 hypothetical protein; 23.0 86 0.0019 25.2 2.8 6 167-172 66-71 (81)
157 TIGR01386 cztS_silS_copS heavy 23.0 1.1E+02 0.0023 25.7 3.5 11 152-162 7-17 (457)
158 KOG4463|consensus 22.9 77 0.0017 30.5 2.9 27 143-169 89-115 (323)
159 KOG3208|consensus 22.7 88 0.0019 29.0 3.1 19 153-171 211-229 (231)
160 PF15168 TRIQK: Triple QxxK/R 22.6 1.1E+02 0.0023 24.7 3.1 18 156-173 56-73 (79)
161 PF14276 DUF4363: Domain of un 22.6 94 0.002 23.6 2.8 12 155-166 5-16 (121)
162 PF04530 Viral_Beta_CD: Viral 22.5 92 0.002 26.4 3.0 27 146-172 45-71 (122)
163 MTH00169 ATP8 ATP synthase F0 22.4 1.5E+02 0.0032 22.2 3.7 19 149-167 9-27 (67)
164 COG0601 DppB ABC-type dipeptid 22.3 1.3E+02 0.0029 27.3 4.2 27 147-173 3-29 (317)
165 PF09726 Macoilin: Transmembra 22.3 1.1E+02 0.0023 31.2 3.9 10 167-176 129-138 (697)
166 PF14316 DUF4381: Domain of un 22.2 92 0.002 24.7 2.8 13 167-179 36-48 (146)
167 PHA02967 hypothetical protein; 22.2 88 0.0019 26.8 2.8 34 134-175 17-50 (128)
168 TIGR01478 STEVOR variant surfa 22.2 96 0.0021 29.5 3.3 20 164-183 273-292 (295)
169 PF09972 DUF2207: Predicted me 22.1 1E+02 0.0023 26.8 3.3 10 90-99 121-130 (511)
170 PF03579 SHP: Small hydrophobi 22.0 84 0.0018 24.5 2.4 15 157-171 18-32 (64)
171 PRK15120 lipopolysaccharide AB 22.0 1.3E+02 0.0029 26.4 4.0 26 147-172 5-30 (366)
172 PRK15048 methyl-accepting chem 21.9 1.5E+02 0.0032 27.2 4.4 27 145-171 186-212 (553)
173 COG3162 Predicted membrane pro 21.8 1.4E+02 0.0031 24.8 3.9 23 145-167 24-46 (102)
174 PF10808 DUF2542: Protein of u 21.7 57 0.0012 26.2 1.5 15 156-170 6-20 (79)
175 COG1622 CyoA Heme/copper-type 21.6 1.7E+02 0.0038 26.2 4.7 22 160-181 44-65 (247)
176 PF03176 MMPL: MMPL family; I 21.5 1.5E+02 0.0032 25.3 4.1 12 145-156 159-170 (333)
177 TIGR02972 TMAO_torE trimethyla 21.3 1.1E+02 0.0024 22.3 2.8 10 157-166 15-24 (47)
178 PTZ00260 dolichyl-phosphate be 21.1 1.5E+02 0.0032 26.3 4.1 20 142-161 3-22 (333)
179 COG4853 Uncharacterized protei 20.9 69 0.0015 30.2 2.1 17 155-171 8-24 (264)
180 PRK15105 peptidoglycan synthas 20.8 1.1E+02 0.0023 29.7 3.5 7 151-157 21-27 (578)
181 PF06682 DUF1183: Protein of u 20.8 88 0.0019 29.4 2.8 14 158-171 164-177 (318)
182 PHA03083 poxvirus myristoylpro 20.7 69 0.0015 30.8 2.1 20 97-116 243-262 (334)
183 PF04790 Sarcoglycan_1: Sarcog 20.6 1E+02 0.0022 27.9 3.1 19 154-172 19-37 (264)
184 PTZ00370 STEVOR; Provisional 20.5 1E+02 0.0022 29.4 3.1 20 164-183 269-288 (296)
185 PF06837 Fijivirus_P9-2: Fijiv 20.3 99 0.0021 28.4 2.9 17 156-172 125-141 (214)
186 PF05510 Sarcoglycan_2: Sarcog 20.3 1.2E+02 0.0026 29.4 3.6 6 76-81 184-189 (386)
187 COG5487 Small integral membran 20.3 1.1E+02 0.0025 23.1 2.7 20 151-174 32-51 (54)
188 PF00822 PMP22_Claudin: PMP-22 20.3 1.5E+02 0.0032 22.4 3.5 32 149-180 71-102 (166)
189 TIGR03747 conj_TIGR03747 integ 20.2 2E+02 0.0044 25.8 4.9 43 136-178 124-167 (233)
190 PTZ00116 signal peptidase; Pro 20.2 69 0.0015 28.4 1.9 15 135-149 2-16 (185)
191 PF04612 T2SM: Type II secreti 20.1 34 0.00075 26.4 0.0 18 154-171 18-35 (160)
192 PRK10833 putative assembly pro 20.1 75 0.0016 30.2 2.2 16 150-165 1-16 (617)
193 PF14992 TMCO5: TMCO5 family 20.0 1.8E+02 0.0039 27.3 4.6 27 145-171 212-239 (280)
194 PF06422 PDR_CDR: CDR ABC tran 20.0 1.4E+02 0.0031 22.9 3.4 9 169-177 66-74 (103)
195 PF07234 DUF1426: Protein of u 20.0 1.6E+02 0.0036 25.0 3.9 28 141-168 8-36 (117)
No 1
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=95.97 E-value=0.0049 Score=48.23 Aligned_cols=36 Identities=28% Similarity=0.600 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccCCccccccc
Q psy12992 153 VFFLFIVIFLLLILLFFFIGLEQRRKNDNKSQMGSG 188 (319)
Q Consensus 153 vfflfiviflllillfffigleqrrkndnksqmgsg 188 (319)
|||++|||++||+|++|++--..||+.-..-..|.+
T Consensus 3 ~l~~iii~~i~l~~~~~~~~~rRR~r~G~~P~~gt~ 38 (130)
T PF12273_consen 3 VLFAIIIVAILLFLFLFYCHNRRRRRRGLQPIYGTR 38 (130)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCCce
Confidence 444444444443333333323333333344444443
No 2
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=90.43 E-value=0.16 Score=39.74 Aligned_cols=27 Identities=26% Similarity=0.590 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCCc
Q psy12992 156 LFIVIFLLLILLFFFIGLEQRRKNDNK 182 (319)
Q Consensus 156 lfiviflllillfffigleqrrkndnk 182 (319)
+|++||+++||||||+++--+|+...+
T Consensus 3 ~l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 3 VLFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 578888888888888888877776543
No 3
>PHA02909 hypothetical protein; Provisional
Probab=87.18 E-value=1.3 Score=34.65 Aligned_cols=53 Identities=32% Similarity=0.681 Sum_probs=35.3
Q ss_pred CceEEEEEee-eeEEEEeecceEEeehHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q psy12992 117 SSLVLSIVHT-DIRVVIKSHSWVIRVNFLVFIFLMRRVF------FLFIVIFLLLILLFF 169 (319)
Q Consensus 117 sslvlsivht-dirvvikshswvirvnflvfiflmrrvf------flfiviflllillff 169 (319)
.-|.||+-.. .-+|......+.|-|.|+.|..+.-..| +.+|.|.+-||||||
T Consensus 11 nylmlsvdygngkkvyytentfcimvsfilfviiflsmftilacsyvyiaiiislillff 70 (72)
T PHA02909 11 NYLMLSVDYGNGKKVYYTENTFCIMVSFILFVIIFLSMFTILACSYVYIAIIISLILLFF 70 (72)
T ss_pred CeEEEEEecCCCeEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456665433 2456667788889999988765544444 356777788888887
No 4
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=80.97 E-value=2.5 Score=34.05 Aligned_cols=32 Identities=38% Similarity=0.665 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccCCcc
Q psy12992 152 RVFFLFIVIFLLLILLFFFIGLEQRRKNDNKS 183 (319)
Q Consensus 152 rvfflfiviflllillfffigleqrrkndnks 183 (319)
-+||++..-++++++.|||-.|+..++.|+++
T Consensus 46 a~~iI~~~gv~~~~ly~ffs~Ltkl~~~d~~k 77 (84)
T PRK13718 46 AVFVILYSGVLLFILYFFFSALTKLQKHDERK 77 (84)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhccccc
Confidence 45555556678888999999999988888754
No 5
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=79.46 E-value=2.2 Score=33.06 Aligned_cols=19 Identities=5% Similarity=0.453 Sum_probs=13.1
Q ss_pred ehHHHHHHHHHHHHHHHHH
Q psy12992 141 VNFLVFIFLMRRVFFLFIV 159 (319)
Q Consensus 141 vnflvfiflmrrvfflfiv 159 (319)
|||+||+|++.+++|=-|.
T Consensus 3 i~Flil~~il~~~~~~pi~ 21 (147)
T TIGR01144 3 ISFILLVWFCMKYVWPPLA 21 (147)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6888888877776655443
No 6
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=74.93 E-value=13 Score=28.21 Aligned_cols=42 Identities=33% Similarity=0.560 Sum_probs=27.2
Q ss_pred EEEeecceEEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy12992 130 VVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLE 174 (319)
Q Consensus 130 vvikshswvirvnflvfiflmrrvfflfiviflllillfffigle 174 (319)
|.|---.|.|..++.+|+.+.- ++|+++++++-++.+++++.
T Consensus 3 V~I~~~~~~ie~sl~~~~~~l~---~~~~~l~ll~~ll~~~~~~p 44 (108)
T PF07219_consen 3 VLISWGGYRIETSLWVALILLL---LLFVVLYLLLRLLRRLLSLP 44 (108)
T ss_pred EEEEECCEEEEeeHHHHHHHHH---HHHHHHHHHHHHHHHHHhCh
Confidence 5666778999999998887653 33444445555555555553
No 7
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=71.88 E-value=12 Score=33.09 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=20.8
Q ss_pred EEEEeecceEEeehHHHHHHHHHHHHHHH
Q psy12992 129 RVVIKSHSWVIRVNFLVFIFLMRRVFFLF 157 (319)
Q Consensus 129 rvvikshswvirvnflvfiflmrrvfflf 157 (319)
-|+|---.|.|.+++.+|++++--+||++
T Consensus 27 yv~i~~~~~~ie~s~~~~~~~~~~~~~~~ 55 (409)
T TIGR00540 27 YVLIETANRIIEMSITGLAIFFIIALAII 55 (409)
T ss_pred eEEEEECCEEEEeeHHHHHHHHHHHHHHH
Confidence 56777789999999999887654433333
No 8
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=69.64 E-value=5 Score=31.86 Aligned_cols=6 Identities=33% Similarity=0.617 Sum_probs=3.2
Q ss_pred hhhhcc
Q psy12992 173 LEQRRK 178 (319)
Q Consensus 173 leqrrk 178 (319)
++.|+.
T Consensus 31 l~~R~~ 36 (159)
T PRK09173 31 LDARAD 36 (159)
T ss_pred HHHHHH
Confidence 555553
No 9
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=68.89 E-value=16 Score=32.46 Aligned_cols=23 Identities=13% Similarity=0.288 Sum_probs=18.7
Q ss_pred EEEEeecceEEeehHHHHHHHHH
Q psy12992 129 RVVIKSHSWVIRVNFLVFIFLMR 151 (319)
Q Consensus 129 rvvikshswvirvnflvfiflmr 151 (319)
-|+|---.|.|.+++.+|+++.-
T Consensus 27 yv~i~~~~~~ie~sl~~~~~~~~ 49 (398)
T PRK10747 27 YVLIQTDNYNIETSVTGLAIILI 49 (398)
T ss_pred eEEEEECCEEEEehHHHHHHHHH
Confidence 57777789999999999887653
No 10
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=67.77 E-value=7 Score=28.99 Aligned_cols=15 Identities=33% Similarity=0.791 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy12992 154 FFLFIVIFLLLILLF 168 (319)
Q Consensus 154 fflfiviflllillf 168 (319)
||+.+|.|++|++++
T Consensus 2 l~~~~i~Flil~~~l 16 (132)
T PF00430_consen 2 LFWQLINFLILFFLL 16 (132)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 444445554444433
No 11
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=67.77 E-value=6.2 Score=30.31 Aligned_cols=6 Identities=33% Similarity=0.706 Sum_probs=3.0
Q ss_pred hhhhcc
Q psy12992 173 LEQRRK 178 (319)
Q Consensus 173 leqrrk 178 (319)
|++|+.
T Consensus 34 l~~R~~ 39 (140)
T PRK07353 34 VEERED 39 (140)
T ss_pred HHHHHH
Confidence 455543
No 12
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=65.30 E-value=2.4 Score=34.52 Aligned_cols=29 Identities=17% Similarity=0.521 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhhhhcccCCcccccccc
Q psy12992 161 FLLLILLFFFIGLEQRRKNDNKSQMGSGL 189 (319)
Q Consensus 161 flllillfffigleqrrkndnksqmgsgl 189 (319)
|++++.+|||+-..|+++....-+|-+.|
T Consensus 9 ~vv~~~i~yf~iRPQkKr~Ke~~em~~sL 37 (113)
T PRK06531 9 FVVMLGLIFFMQRQQKKQAQERQNQLNAI 37 (113)
T ss_pred HHHHHHHHHheechHHHHHHHHHHHHHhc
Confidence 33444445566556666554444444443
No 13
>MTH00025 ATP8 ATP synthase F0 subunit 8; Validated
Probab=64.90 E-value=10 Score=28.98 Aligned_cols=27 Identities=33% Similarity=0.612 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12992 145 VFIFLMRRVFFLFIVIFLLLILLFFFI 171 (319)
Q Consensus 145 vfiflmrrvfflfiviflllillfffi 171 (319)
.+.+.+--+|++||++++|++++-.+|
T Consensus 5 d~~~f~nQi~W~~i~f~il~~l~sk~i 31 (70)
T MTH00025 5 DTTTYLTQYRWTLIVLFLLLFFLVFFV 31 (70)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566888888888887776664443
No 14
>KOG0860|consensus
Probab=64.78 E-value=8.3 Score=32.17 Aligned_cols=21 Identities=38% Similarity=0.856 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12992 150 MRRVFFLFIVIFLLLILLFFF 170 (319)
Q Consensus 150 mrrvfflfiviflllillfff 170 (319)
|+-...+.++|+|+.|++|||
T Consensus 94 m~~il~~v~~i~l~iiii~~~ 114 (116)
T KOG0860|consen 94 MRIILGLVIIILLVVIIIYIF 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 444455556666666666665
No 15
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=64.77 E-value=3 Score=32.32 Aligned_cols=23 Identities=30% Similarity=0.837 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhccc
Q psy12992 157 FIVIFLLLILLFFFIGLEQRRKN 179 (319)
Q Consensus 157 fiviflllillfffigleqrrkn 179 (319)
|++||+||.++++|+-|..|++.
T Consensus 71 ~v~IlVily~IyYFVILRer~~~ 93 (101)
T PF06024_consen 71 FVCILVILYAIYYFVILRERQKS 93 (101)
T ss_pred HHHHHHHHhhheEEEEEeccccc
Confidence 44444444445555555544443
No 16
>PF11100 TrbE: Conjugal transfer protein TrbE ; InterPro: IPR020150 TrbE is encoded by the F-plasmid and is located between traN and traF. The product of trbE is a small, integral, inner membrane protein. Mutation of trbE by insertional mutagenesis suggests that TrbE is not essential for F transfer from Escherichia coli (strain K12) under standard mating conditions [].
Probab=64.05 E-value=13 Score=29.01 Aligned_cols=31 Identities=35% Similarity=0.673 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcccC
Q psy12992 150 MRRVFFLFIVIFLLLILLFFFIGLEQRRKND 180 (319)
Q Consensus 150 mrrvfflfiviflllillfffigleqrrknd 180 (319)
+--+||++..-+++.++.+||-.|+.+++.|
T Consensus 36 l~a~~~I~~~g~~~~~~y~ffs~Lt~l~~~d 66 (66)
T PF11100_consen 36 LEAVFFILASGFMLFILYCFFSALTKLLQHD 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3456667777777888888998898877654
No 17
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=63.25 E-value=5.5 Score=29.55 Aligned_cols=12 Identities=42% Similarity=1.132 Sum_probs=5.1
Q ss_pred ehHHHHHHHHHH
Q psy12992 141 VNFLVFIFLMRR 152 (319)
Q Consensus 141 vnflvfiflmrr 152 (319)
|||++|+|++.+
T Consensus 7 i~Flil~~~l~~ 18 (132)
T PF00430_consen 7 INFLILFFLLNK 18 (132)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 18
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=61.24 E-value=9.6 Score=30.41 Aligned_cols=6 Identities=33% Similarity=0.767 Sum_probs=2.9
Q ss_pred hhhhcc
Q psy12992 173 LEQRRK 178 (319)
Q Consensus 173 leqrrk 178 (319)
|++|+.
T Consensus 37 l~~R~~ 42 (164)
T PRK14473 37 LNERTR 42 (164)
T ss_pred HHHHHH
Confidence 455543
No 19
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=61.22 E-value=9.3 Score=31.22 Aligned_cols=6 Identities=17% Similarity=0.822 Sum_probs=3.0
Q ss_pred hhhhcc
Q psy12992 173 LEQRRK 178 (319)
Q Consensus 173 leqrrk 178 (319)
+++|+.
T Consensus 47 l~~R~~ 52 (173)
T PRK13453 47 MDKRER 52 (173)
T ss_pred HHHHHH
Confidence 455543
No 20
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=60.82 E-value=9.7 Score=31.27 Aligned_cols=25 Identities=32% Similarity=0.731 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcc
Q psy12992 154 FFLFIVIFLLLILLFFFIGLEQRRK 178 (319)
Q Consensus 154 fflfiviflllillfffigleqrrk 178 (319)
||..+.||+++||++|..-+..+|.
T Consensus 37 ~lvI~~iFil~VilwfvCC~kRkrs 61 (94)
T PF05393_consen 37 FLVICGIFILLVILWFVCCKKRKRS 61 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7778889999999998877765543
No 21
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=59.82 E-value=4.1 Score=35.05 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcc
Q psy12992 155 FLFIVIFLLLILLFFFIGLEQRRK 178 (319)
Q Consensus 155 flfiviflllillfffigleqrrk 178 (319)
.+||||+|++|+||++.|-.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~ 32 (331)
T PRK03598 9 LAVVVLAAAVAGGWWWYQSRQDNG 32 (331)
T ss_pred hHHHHHHHHHHHheeEeeecCCcc
Confidence 457788888999999988776544
No 22
>KOG1326|consensus
Probab=59.48 E-value=12 Score=40.44 Aligned_cols=22 Identities=36% Similarity=0.795 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy12992 150 MRRVFFLFIVIFLLLILLFFFI 171 (319)
Q Consensus 150 mrrvfflfiviflllillfffi 171 (319)
.|-...+|++|++||++|+|||
T Consensus 1070 yr~~il~~l~ililll~l~~fl 1091 (1105)
T KOG1326|consen 1070 YRWYILLLLLILILLLLLALFL 1091 (1105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777765
No 23
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=59.20 E-value=11 Score=30.00 Aligned_cols=6 Identities=17% Similarity=0.667 Sum_probs=2.9
Q ss_pred hhhhcc
Q psy12992 173 LEQRRK 178 (319)
Q Consensus 173 leqrrk 178 (319)
|+.|+.
T Consensus 34 l~~R~~ 39 (159)
T PRK13461 34 IDSRQS 39 (159)
T ss_pred HHHHHH
Confidence 455543
No 24
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=57.63 E-value=17 Score=25.94 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy12992 151 RRVFFLFIVIFLLLI 165 (319)
Q Consensus 151 rrvfflfivifllli 165 (319)
.|+++.|++++++++
T Consensus 6 ~KL~~~f~~~~~l~~ 20 (181)
T PF12729_consen 6 TKLILGFGLIILLLL 20 (181)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555544444333
No 25
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=56.52 E-value=39 Score=23.99 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12992 145 VFIFLMRRVFFLFIVIFLLL 164 (319)
Q Consensus 145 vfiflmrrvfflfiviflll 164 (319)
+.++=|--||+.++++++++
T Consensus 7 i~i~Gm~iVF~~L~lL~~~i 26 (79)
T PF04277_consen 7 IMIIGMGIVFLVLILLILVI 26 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444433333
No 26
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=56.31 E-value=15 Score=30.95 Aligned_cols=28 Identities=21% Similarity=0.494 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy12992 149 LMRRVFFLFIVIFLLLILLFFFIGLEQR 176 (319)
Q Consensus 149 lmrrvfflfiviflllillfffigleqr 176 (319)
|..|++++|++++++++++++++...++
T Consensus 9 l~~rl~~~~~~~li~~~~i~~~~~~~~~ 36 (461)
T PRK09470 9 LTARIFAIFWLTLALVLMLVLMLPKLDS 36 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 4566666666665555555555544443
No 27
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=55.06 E-value=10 Score=24.77 Aligned_cols=14 Identities=50% Similarity=1.079 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHH
Q psy12992 154 FFLFIVIFLLLILL 167 (319)
Q Consensus 154 fflfiviflllill 167 (319)
|-|.+|.|+|||++
T Consensus 6 FalivVLFILLiIv 19 (24)
T PF09680_consen 6 FALIVVLFILLIIV 19 (24)
T ss_pred chhHHHHHHHHHHh
Confidence 55666777776653
No 28
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=54.02 E-value=24 Score=31.30 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=19.6
Q ss_pred ehHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy12992 141 VNFLVFI----FLMRRVFFLFIVIFLLLILLFF 169 (319)
Q Consensus 141 vnflvfi----flmrrvfflfiviflllillff 169 (319)
||||.+. ..-|+...+.+++||+++++++
T Consensus 176 v~FL~w~aeP~~~~R~~~G~~vl~fL~il~~l~ 208 (219)
T PF02167_consen 176 VNFLAWAAEPEKDERKRMGLKVLGFLLILTVLA 208 (219)
T ss_dssp HHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888886 4667777777777775544433
No 29
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=53.98 E-value=6.2 Score=32.03 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=11.0
Q ss_pred HHHHHHhhhhhhcccCCcccccc
Q psy12992 165 ILLFFFIGLEQRRKNDNKSQMGS 187 (319)
Q Consensus 165 illfffigleqrrkndnksqmgs 187 (319)
++++||+--.|+++.....+|-+
T Consensus 15 ~i~yF~~iRPQkKr~K~~~~m~~ 37 (109)
T PRK05886 15 GGFMYFASRRQRKAMQATIDLHE 37 (109)
T ss_pred HHHHHHHccHHHHHHHHHHHHHH
Confidence 33455555566555443333433
No 30
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=53.79 E-value=9.8 Score=28.52 Aligned_cols=28 Identities=14% Similarity=0.530 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhhhhhcccCCcccccccc
Q psy12992 162 LLLILLFFFIGLEQRRKNDNKSQMGSGL 189 (319)
Q Consensus 162 lllillfffigleqrrkndnksqmgsgl 189 (319)
+++++++||+-..|+++.....+|-+.|
T Consensus 10 ~~~~i~yf~~~rpqkk~~k~~~~m~~~L 37 (82)
T PF02699_consen 10 IIFVIFYFLMIRPQKKQQKEHQEMLASL 37 (82)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTGGG--
T ss_pred HHHHHHhhheecHHHHHHHHHHHHHHcC
Confidence 3444455556666666655555554444
No 31
>KOG0812|consensus
Probab=53.32 E-value=14 Score=35.24 Aligned_cols=16 Identities=44% Similarity=0.872 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12992 149 LMRRVFFLFIVIFLLL 164 (319)
Q Consensus 149 lmrrvfflfiviflll 164 (319)
||-++|++.||+||+.
T Consensus 291 LmvkiF~i~ivFflvf 306 (311)
T KOG0812|consen 291 LMVKIFGILIVFFLVF 306 (311)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6667666665555443
No 32
>COG0768 FtsI Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]
Probab=53.23 E-value=18 Score=34.60 Aligned_cols=30 Identities=37% Similarity=0.560 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy12992 148 FLMRRVFFLFIVIFLLLILLFFFIGLEQRR 177 (319)
Q Consensus 148 flmrrvfflfiviflllillfffigleqrr 177 (319)
...+|++++|++||++++++++.+..-|--
T Consensus 12 ~~~~r~~~~~~~i~~~~~~l~~~l~~~qi~ 41 (599)
T COG0768 12 LFRRRLNLLFLIIFLLFALLILRLFYLQIV 41 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHheecc
Confidence 445677777777777777776666555433
No 33
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=52.69 E-value=13 Score=32.41 Aligned_cols=13 Identities=31% Similarity=0.851 Sum_probs=5.9
Q ss_pred EEeeeeccccccc
Q psy12992 85 VRWEVNLLGRAWQ 97 (319)
Q Consensus 85 vrwevnllgrawq 97 (319)
+.|....|--.|+
T Consensus 154 ~~~~~~~l~l~~~ 166 (268)
T PF09451_consen 154 VDWDGCVLRLEWK 166 (268)
T ss_pred ecCCCcEEEEEEe
Confidence 4444444444443
No 34
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=52.63 E-value=15 Score=31.55 Aligned_cols=6 Identities=33% Similarity=0.756 Sum_probs=3.0
Q ss_pred hhhhcc
Q psy12992 173 LEQRRK 178 (319)
Q Consensus 173 leqrrk 178 (319)
+++|++
T Consensus 34 l~~R~~ 39 (246)
T TIGR03321 34 MDAREK 39 (246)
T ss_pred HHHHHH
Confidence 455543
No 35
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=52.51 E-value=17 Score=35.77 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcc
Q psy12992 154 FFLFIVIFLLLILLFFFIGLEQRRK 178 (319)
Q Consensus 154 fflfiviflllillfffigleqrrk 178 (319)
|..|+|-++|.++.|||++.-+..+
T Consensus 71 fvaflvslVL~~l~~f~l~r~~~l~ 95 (429)
T PF12297_consen 71 FVAFLVSLVLTWLCFFLLARTRCLQ 95 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 4456778888899999998877654
No 36
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=52.00 E-value=18 Score=25.67 Aligned_cols=15 Identities=53% Similarity=1.032 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhhh
Q psy12992 159 VIFLLLILLFFFIGL 173 (319)
Q Consensus 159 viflllillfffigl 173 (319)
+.|+.|++|+|+|.+
T Consensus 14 iVF~~L~lL~~~i~l 28 (79)
T PF04277_consen 14 IVFLVLILLILVISL 28 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 37
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=51.94 E-value=4.8 Score=27.81 Aligned_cols=11 Identities=55% Similarity=1.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q psy12992 158 IVIFLLLILLF 168 (319)
Q Consensus 158 iviflllillf 168 (319)
++|+++++++|
T Consensus 5 ili~~vi~~l~ 15 (110)
T PF06480_consen 5 ILIILVILLLF 15 (110)
T ss_dssp -----------
T ss_pred ehhHHHHHHHH
Confidence 33333333333
No 38
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=51.84 E-value=22 Score=30.13 Aligned_cols=22 Identities=36% Similarity=0.763 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy12992 148 FLMRRVFFLFIVIFLLLILLFF 169 (319)
Q Consensus 148 flmrrvfflfiviflllillff 169 (319)
.|..-|||.|+.|.+++|||..
T Consensus 12 al~K~~~FA~L~i~~FiILLIi 33 (121)
T PF10669_consen 12 ALTKIMFFAFLFIVVFIILLII 33 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677766666666666554
No 39
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=51.49 E-value=17 Score=29.52 Aligned_cols=6 Identities=67% Similarity=0.977 Sum_probs=3.1
Q ss_pred hhhhcc
Q psy12992 173 LEQRRK 178 (319)
Q Consensus 173 leqrrk 178 (319)
+++|+.
T Consensus 47 l~~R~~ 52 (175)
T PRK14472 47 LEEREK 52 (175)
T ss_pred HHHHHH
Confidence 455553
No 40
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=51.41 E-value=11 Score=25.75 Aligned_cols=9 Identities=56% Similarity=0.667 Sum_probs=3.8
Q ss_pred eehHHHHHH
Q psy12992 140 RVNFLVFIF 148 (319)
Q Consensus 140 rvnflvfif 148 (319)
.|||+.+.+
T Consensus 8 ~v~~~~~~~ 16 (68)
T PF06305_consen 8 TVNFLFGQF 16 (68)
T ss_pred EEEEEeeec
Confidence 344444433
No 41
>PF13889 Chromosome_seg: Chromosome segregation during meiosis
Probab=50.96 E-value=14 Score=27.51 Aligned_cols=26 Identities=38% Similarity=0.464 Sum_probs=18.1
Q ss_pred cccccCCCCCCceEEEEEeeeeEEEEeec
Q psy12992 107 WHKRDHSSSSSSLVLSIVHTDIRVVIKSH 135 (319)
Q Consensus 107 whkrdhsssssslvlsivhtdirvviksh 135 (319)
-|-|-.++++.-+- +|+|||||+-.+
T Consensus 7 iHLrf~~~~~gr~Y---Lh~dIRvvF~~r 32 (56)
T PF13889_consen 7 IHLRFCCPRSGRFY---LHTDIRVVFARR 32 (56)
T ss_pred EEEEEecCCCCcEE---EECCeEEEEecc
Confidence 46666666655554 599999998654
No 42
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=49.79 E-value=18 Score=29.25 Aligned_cols=6 Identities=67% Similarity=1.104 Sum_probs=3.1
Q ss_pred hhhhcc
Q psy12992 173 LEQRRK 178 (319)
Q Consensus 173 leqrrk 178 (319)
|++|++
T Consensus 48 l~~R~~ 53 (174)
T PRK07352 48 LEERRE 53 (174)
T ss_pred HHHHHH
Confidence 455554
No 43
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=49.36 E-value=26 Score=31.97 Aligned_cols=31 Identities=32% Similarity=0.583 Sum_probs=23.2
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12992 141 VNFLVFIFLMRRVFFLFIVIFLLLILLFFFI 171 (319)
Q Consensus 141 vnflvfiflmrrvfflfiviflllillfffi 171 (319)
+|||.==|.--|...|||..++=+||||+=+
T Consensus 163 lnylARNFYNlr~lALflAFaINFILLFYKV 193 (274)
T PF06459_consen 163 LNYLARNFYNLRFLALFLAFAINFILLFYKV 193 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666777778888888888888888744
No 44
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=49.30 E-value=19 Score=29.21 Aligned_cols=6 Identities=33% Similarity=0.700 Sum_probs=2.8
Q ss_pred hhhhcc
Q psy12992 173 LEQRRK 178 (319)
Q Consensus 173 leqrrk 178 (319)
|++|+.
T Consensus 45 l~~R~~ 50 (173)
T PRK13460 45 LDERAS 50 (173)
T ss_pred HHHHHH
Confidence 455543
No 45
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=48.74 E-value=12 Score=30.42 Aligned_cols=6 Identities=17% Similarity=0.207 Sum_probs=3.4
Q ss_pred hhhhcc
Q psy12992 173 LEQRRK 178 (319)
Q Consensus 173 leqrrk 178 (319)
|++|++
T Consensus 39 le~R~~ 44 (167)
T PRK14475 39 LDAYAA 44 (167)
T ss_pred HHHHHH
Confidence 566654
No 46
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=48.45 E-value=29 Score=27.30 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy12992 149 LMRRVFFLFIVIFLLLILLFFF 170 (319)
Q Consensus 149 lmrrvfflfiviflllillfff 170 (319)
+-++.||+.|+++|++.+.+|+
T Consensus 4 ~~~~~~~~ii~~~l~~~~~~~~ 25 (103)
T PRK14125 4 KESKIHVSIFFVLTALVLLIFV 25 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566555555555555554
No 47
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=48.40 E-value=17 Score=24.12 Aligned_cols=13 Identities=46% Similarity=1.093 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q psy12992 154 FFLFIVIFLLLIL 166 (319)
Q Consensus 154 fflfiviflllil 166 (319)
|.+.+|.|+|||+
T Consensus 8 f~livVLFILLII 20 (26)
T TIGR01732 8 FALIVVLFILLVI 20 (26)
T ss_pred hHHHHHHHHHHHH
Confidence 4555666666654
No 48
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=48.21 E-value=17 Score=31.03 Aligned_cols=17 Identities=12% Similarity=0.422 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy12992 155 FLFIVIFLLLILLFFFI 171 (319)
Q Consensus 155 flfiviflllillfffi 171 (319)
.++|++|++++++|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~ 24 (423)
T TIGR01843 8 TWLIAGLVVIFFLWAYF 24 (423)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33444444444444333
No 49
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=47.50 E-value=17 Score=29.31 Aligned_cols=12 Identities=58% Similarity=1.107 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHH
Q psy12992 157 FIVIFLLLILLF 168 (319)
Q Consensus 157 fiviflllillf 168 (319)
.+||.+|||+||
T Consensus 33 vLVIIiLlImlf 44 (85)
T PF10717_consen 33 VLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHH
Confidence 345556666665
No 50
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=47.46 E-value=21 Score=28.49 Aligned_cols=6 Identities=17% Similarity=0.601 Sum_probs=3.0
Q ss_pred hhhhcc
Q psy12992 173 LEQRRK 178 (319)
Q Consensus 173 leqrrk 178 (319)
+++|+.
T Consensus 36 l~~R~~ 41 (141)
T PRK08476 36 MDNRNA 41 (141)
T ss_pred HHHHHH
Confidence 455543
No 51
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=47.44 E-value=31 Score=24.53 Aligned_cols=28 Identities=32% Similarity=0.692 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy12992 146 FIFLMRRVFFLFIVIFLLLILLFFFIGLEQ 175 (319)
Q Consensus 146 fiflmrrvfflfiviflllillfffigleq 175 (319)
..|+.+-+|++ +|+++|+.|+-+-|..|
T Consensus 8 ~~fi~~T~fYf--~Ill~L~ylYgy~g~~~ 35 (42)
T PF12459_consen 8 VKFIGKTLFYF--AILLALIYLYGYSGIGQ 35 (42)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHhcCCCCC
Confidence 45666666554 45566666665555443
No 52
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=47.06 E-value=8.1 Score=29.41 Aligned_cols=24 Identities=21% Similarity=0.474 Sum_probs=12.7
Q ss_pred HHHHHhhhhhhcccCCcccccccc
Q psy12992 166 LLFFFIGLEQRRKNDNKSQMGSGL 189 (319)
Q Consensus 166 llfffigleqrrkndnksqmgsgl 189 (319)
+++||+-..|+++.....+|-+.|
T Consensus 15 i~yf~~~rpqkK~~k~~~~m~~~L 38 (84)
T TIGR00739 15 IFYFLIIRPQRKRRKAHKKLIESL 38 (84)
T ss_pred HHHHheechHHHHHHHHHHHHHhC
Confidence 345555556666655554554443
No 53
>TIGR02832 spo_yunB sporulation protein YunB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. Mutation of this sigma E-regulated gene, designated yunB, has been shown to cause a sporulation defect.
Probab=46.52 E-value=16 Score=31.99 Aligned_cols=22 Identities=36% Similarity=1.005 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy12992 150 MRRVFFLFIVIFLLLILLFFFI 171 (319)
Q Consensus 150 mrrvfflfiviflllillfffi 171 (319)
.|++|.+.+++|+++++.||++
T Consensus 3 ~R~~~l~~~i~~~~~~~~~~~~ 24 (204)
T TIGR02832 3 FRRILLISLILFILLLLQFLWI 24 (204)
T ss_pred eeehHHHHHHHHHHHHHHHHHh
Confidence 3666666666666655554443
No 54
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=46.42 E-value=18 Score=28.83 Aligned_cols=25 Identities=24% Similarity=0.614 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHH-hhhhhhcccC
Q psy12992 156 LFIVIFLLLILLFFF-IGLEQRRKND 180 (319)
Q Consensus 156 lfiviflllillfff-igleqrrknd 180 (319)
.++++|++++++|+| |--.||++..
T Consensus 10 ~~ll~~vl~~~ifyFli~RPQrKr~K 35 (97)
T COG1862 10 VLLLPLVLIFAIFYFLIIRPQRKRMK 35 (97)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 344455555555555 4455554433
No 55
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=46.34 E-value=22 Score=30.57 Aligned_cols=6 Identities=50% Similarity=0.905 Sum_probs=3.1
Q ss_pred hhhhcc
Q psy12992 173 LEQRRK 178 (319)
Q Consensus 173 leqrrk 178 (319)
|+.|+.
T Consensus 82 Le~R~~ 87 (204)
T PRK09174 82 IETRRD 87 (204)
T ss_pred HHHHHH
Confidence 555543
No 56
>PF13789 DUF4181: Domain of unknown function (DUF4181)
Probab=46.31 E-value=35 Score=26.41 Aligned_cols=46 Identities=35% Similarity=0.860 Sum_probs=28.9
Q ss_pred ceEEeehHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhhhhcccCC
Q psy12992 136 SWVIRVNFLVFIFLMR-----RVFFLFIVIFLLLILLFFFIGLEQRRKNDN 181 (319)
Q Consensus 136 swvirvnflvfiflmr-----rvfflfiviflllillfffigleqrrkndn 181 (319)
.|.+++-+++.++.+. +.+-..+++|+++++++.|=+..+.+-..+
T Consensus 35 e~~i~i~~ii~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ra~mEWKy~re 85 (110)
T PF13789_consen 35 EWIIFIIFIILIFIFLFIFIFRFFYPYILIFLFLIILFCFRAFMEWKYDRE 85 (110)
T ss_pred HHHhhhhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3566666666553322 234556777888888888888877654433
No 57
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=45.44 E-value=29 Score=26.72 Aligned_cols=12 Identities=50% Similarity=0.933 Sum_probs=7.8
Q ss_pred eecceEEeehHHHHH
Q psy12992 133 KSHSWVIRVNFLVFI 147 (319)
Q Consensus 133 kshswvirvnflvfi 147 (319)
.+|-|. ||.+.|
T Consensus 45 ~sh~WR---N~GIli 56 (103)
T PF06422_consen 45 YSHRWR---NFGILI 56 (103)
T ss_pred ccchhh---hHHHHH
Confidence 467775 876544
No 58
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=45.25 E-value=17 Score=32.05 Aligned_cols=26 Identities=38% Similarity=0.392 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCC
Q psy12992 156 LFIVIFLLLILLFFFIGLEQRRKNDN 181 (319)
Q Consensus 156 lfiviflllillfffigleqrrkndn 181 (319)
+.|.|||||+||+.-||+--.-|-.+
T Consensus 12 i~igi~Ll~lLl~cgiGcvwhwkhr~ 37 (158)
T PF11770_consen 12 ISIGISLLLLLLLCGIGCVWHWKHRD 37 (158)
T ss_pred HHHHHHHHHHHHHHhcceEEEeeccC
Confidence 46788888999999999876545433
No 59
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=45.23 E-value=7.9 Score=31.41 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=6.8
Q ss_pred HHHHHHHH--Hhhhhh
Q psy12992 162 LLLILLFF--FIGLEQ 175 (319)
Q Consensus 162 lllillff--figleq 175 (319)
+++|.+|+ ...++.
T Consensus 92 v~~Iv~~~Cc~c~~~K 107 (179)
T PF13908_consen 92 VVLIVCFCCCCCCLYK 107 (179)
T ss_pred HHhHhhheeccccccc
Confidence 44444444 456665
No 60
>PF06678 DUF1179: Protein of unknown function (DUF1179); InterPro: IPR009564 This family consists of several hypothetical Caenorhabditis elegans proteins of around 106 residues in length. The function of the family is unknown.
Probab=43.96 E-value=22 Score=29.49 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=10.6
Q ss_pred HHHHHHHHhhhhhhccc
Q psy12992 163 LLILLFFFIGLEQRRKN 179 (319)
Q Consensus 163 llillfffigleqrrkn 179 (319)
+.+||++.|-.-|++|+
T Consensus 16 ~~lll~~~iv~C~sKKK 32 (103)
T PF06678_consen 16 PFLLLIVSIVQCQSKKK 32 (103)
T ss_pred HHHHHHHHHHHhhhccc
Confidence 44555566667777665
No 61
>MTH00216 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=43.71 E-value=42 Score=30.46 Aligned_cols=6 Identities=50% Similarity=0.954 Sum_probs=3.2
Q ss_pred HHHHHH
Q psy12992 145 VFIFLM 150 (319)
Q Consensus 145 vfiflm 150 (319)
|||.++
T Consensus 3 ~~~~~~ 8 (327)
T MTH00216 3 VFIIFY 8 (327)
T ss_pred HHHHHH
Confidence 555554
No 62
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=42.79 E-value=11 Score=26.85 Aligned_cols=14 Identities=50% Similarity=0.783 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhh
Q psy12992 160 IFLLLILLFFFIGL 173 (319)
Q Consensus 160 iflllillfffigl 173 (319)
++++|++++|++|+
T Consensus 3 ~V~lL~~~~l~iGl 16 (47)
T PF11772_consen 3 LVLLLAILALAIGL 16 (47)
T ss_pred eHHHHHHHHHHHHH
Confidence 34455556666665
No 63
>PRK14401 membrane protein; Provisional
Probab=42.73 E-value=48 Score=29.47 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=41.7
Q ss_pred EeecceEEee----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCccccc
Q psy12992 132 IKSHSWVIRV----------NFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKNDNKSQMG 186 (319)
Q Consensus 132 ikshswvirv----------nflvfiflmrrvfflfiviflllillfffigleqrrkndnksqmg 186 (319)
+-.|.|-+=. -+-+++.++..++.+.++||+.++-||-+.--.|||+.-|.-..|
T Consensus 83 VlGH~fPifl~FkGGKGVAtslGvll~l~p~~~li~~~ifl~v~~~~~~~~~~~~r~~~~~~p~~ 147 (187)
T PRK14401 83 VAGHCWPVFFRFRGGGGIAPTLGFFLVLAPGTTLGTVAFGLAVAGLYRALLWRQRRKGLYPIPFG 147 (187)
T ss_pred HHccCCchhhCCcCccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccccccCCcCCchh
Confidence 3457776533 345778888889999999999999999888888999877765544
No 64
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=42.65 E-value=12 Score=29.74 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=11.7
Q ss_pred HHHHhhhhhhcccCCcccccccc
Q psy12992 167 LFFFIGLEQRRKNDNKSQMGSGL 189 (319)
Q Consensus 167 lfffigleqrrkndnksqmgsgl 189 (319)
++||+-..|+++.....+|-+.|
T Consensus 31 ~yf~~~RpqkK~~k~~~~~~~~L 53 (106)
T PRK05585 31 FYFLIIRPQQKRQKEHKKMLSSL 53 (106)
T ss_pred HHHHhccHHHHHHHHHHHHHHhc
Confidence 34455456666655444444443
No 65
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.23 E-value=49 Score=30.98 Aligned_cols=33 Identities=42% Similarity=0.561 Sum_probs=19.9
Q ss_pred HHHHHHHHHHH--HHHHHHHH-HHHHhhhhhhcccCC
Q psy12992 148 FLMRRVFFLFI--VIFLLLIL-LFFFIGLEQRRKNDN 181 (319)
Q Consensus 148 flmrrvfflfi--viflllil-lfffigleqrrkndn 181 (319)
++|-..||..+ +|||+||. |-|.|++| .|+.+.
T Consensus 47 ~~~~~~f~gia~~~~~l~l~~lig~~~~~~-~r~f~~ 82 (281)
T COG4395 47 MFFGGLFFGIAAFLIFLLLITLIGFVIMLE-MRFFDP 82 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccc
Confidence 44455666666 67787774 44555555 455554
No 66
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=41.91 E-value=28 Score=28.26 Aligned_cols=10 Identities=40% Similarity=0.969 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q psy12992 158 IVIFLLLILL 167 (319)
Q Consensus 158 iviflllill 167 (319)
+|.|++|+++
T Consensus 23 ~i~Flil~~i 32 (173)
T PRK13460 23 LVTFLVVVLV 32 (173)
T ss_pred HHHHHHHHHH
Confidence 3344443333
No 67
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=41.33 E-value=29 Score=28.47 Aligned_cols=6 Identities=33% Similarity=0.905 Sum_probs=3.2
Q ss_pred hhhhcc
Q psy12992 173 LEQRRK 178 (319)
Q Consensus 173 leqrrk 178 (319)
+++|+.
T Consensus 53 l~~R~~ 58 (184)
T CHL00019 53 LDNRKQ 58 (184)
T ss_pred HHHHHH
Confidence 455554
No 68
>PF13584 BatD: Oxygen tolerance
Probab=41.32 E-value=35 Score=30.95 Aligned_cols=21 Identities=33% Similarity=0.714 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy12992 153 VFFLFIVIFLLLILLFFFIGL 173 (319)
Q Consensus 153 vfflfiviflllillfffigl 173 (319)
+|++++++.++++++++++..
T Consensus 427 ~~~~l~~~~~l~~~~~~~~~~ 447 (484)
T PF13584_consen 427 WFWLLLLLPLLLLLLLLILRR 447 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 69
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=40.86 E-value=32 Score=22.32 Aligned_cols=16 Identities=25% Similarity=0.854 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12992 148 FLMRRVFFLFIVIFLL 163 (319)
Q Consensus 148 flmrrvfflfivifll 163 (319)
-.|++++|+++++|+|
T Consensus 5 ~mmKkil~~l~a~~~L 20 (25)
T PF08139_consen 5 SMMKKILFPLLALFML 20 (25)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3578999888888765
No 70
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=40.40 E-value=35 Score=29.32 Aligned_cols=28 Identities=25% Similarity=0.541 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy12992 150 MRRVFFLFIVIFLLLILLFFFIGLEQRR 177 (319)
Q Consensus 150 mrrvfflfiviflllillfffigleqrr 177 (319)
..|.|+.|+++..++|+.|.|=.+.-||
T Consensus 94 l~R~~~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 94 LKRALYVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3577878888777777777665555444
No 71
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=39.94 E-value=26 Score=34.95 Aligned_cols=25 Identities=40% Similarity=0.510 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12992 149 LMRRVFFLFIVIFLLLILLFFFIGL 173 (319)
Q Consensus 149 lmrrvfflfiviflllillfffigl 173 (319)
=.|-+.=++.+++|+|.||++|||+
T Consensus 38 s~RGl~Nlg~LilL~lGLL~LFigy 62 (504)
T PF03935_consen 38 SRRGLLNLGGLILLILGLLMLFIGY 62 (504)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555566654
No 72
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=39.35 E-value=70 Score=23.26 Aligned_cols=13 Identities=54% Similarity=1.122 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q psy12992 153 VFFLFIVIFLLLI 165 (319)
Q Consensus 153 vfflfivifllli 165 (319)
.|.||+||..|+|
T Consensus 15 ~~llflv~imlii 27 (43)
T PF11395_consen 15 SFLLFLVIIMLII 27 (43)
T ss_pred HHHHHHHHHHHHH
Confidence 3555655554444
No 73
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=38.99 E-value=33 Score=29.23 Aligned_cols=6 Identities=33% Similarity=0.833 Sum_probs=3.2
Q ss_pred hhhhcc
Q psy12992 173 LEQRRK 178 (319)
Q Consensus 173 leqrrk 178 (319)
|++|++
T Consensus 77 L~~R~~ 82 (205)
T PRK06231 77 LNKRKE 82 (205)
T ss_pred HHHHHH
Confidence 555554
No 74
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=38.78 E-value=40 Score=33.80 Aligned_cols=28 Identities=36% Similarity=0.715 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHhhhh
Q psy12992 147 IFLMRRVFFLFIVIFL--LLILLFFFIGLE 174 (319)
Q Consensus 147 iflmrrvfflfivifl--llillfffigle 174 (319)
.|||--|.|.|++.++ |+.+++|++|.-
T Consensus 460 ~~Lm~gv~~~Flf~~~l~l~~~~~Fl~G~~ 489 (806)
T PF05478_consen 460 NFLMAGVGLSFLFSWFLMLLVLFYFLVGGN 489 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777666665544 445566777754
No 75
>PHA02818 hypothetical protein; Provisional
Probab=38.74 E-value=59 Score=26.68 Aligned_cols=20 Identities=20% Similarity=0.369 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q psy12992 154 FFLFIVIFLLLILLFFFIGLE 174 (319)
Q Consensus 154 fflfiviflllillfffigle 174 (319)
+++.+|+||+ +.+||.+-.+
T Consensus 67 y~~L~~~~l~-~~~y~~~~~~ 86 (92)
T PHA02818 67 YKILFSILLL-SILYDAFTHS 86 (92)
T ss_pred HHHHHHHHHH-HHHHHHHHHH
Confidence 4455577776 5555555544
No 76
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.63 E-value=16 Score=31.51 Aligned_cols=17 Identities=29% Similarity=0.547 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12992 154 FFLFIVIFLLLILLFFF 170 (319)
Q Consensus 154 fflfiviflllillfff 170 (319)
++|+|.+|+++++.+++
T Consensus 17 v~LiI~sf~~i~~f~~a 33 (132)
T COG5341 17 VMLIILSFLPILLFSLA 33 (132)
T ss_pred hHHHHHHHHHHHhheee
Confidence 45666666655544443
No 77
>PRK12705 hypothetical protein; Provisional
Probab=38.46 E-value=38 Score=33.34 Aligned_cols=18 Identities=17% Similarity=0.502 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12992 153 VFFLFIVIFLLLILLFFF 170 (319)
Q Consensus 153 vfflfiviflllillfff 170 (319)
+|||||+|++++++.|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~ 26 (508)
T PRK12705 9 ILLLLIGLLLGVLVVLLK 26 (508)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356777777666665554
No 78
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=38.46 E-value=32 Score=26.72 Aligned_cols=21 Identities=29% Similarity=0.678 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q psy12992 154 FFLFIVIFLLLILLFFFIGLE 174 (319)
Q Consensus 154 fflfiviflllillfffigle 174 (319)
|++++.+++++.++|++.-+-
T Consensus 2 fWl~~a~l~~~a~~~v~~pl~ 22 (117)
T TIGR03142 2 FWIVAALLTLVALLFLLLPLL 22 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555554443
No 79
>PF15202 Adipogenin: Adipogenin
Probab=37.69 E-value=59 Score=26.11 Aligned_cols=10 Identities=60% Similarity=0.690 Sum_probs=5.5
Q ss_pred eehHHHHHHH
Q psy12992 140 RVNFLVFIFL 149 (319)
Q Consensus 140 rvnflvfifl 149 (319)
-||=|.|-||
T Consensus 8 lvndltfsfl 17 (81)
T PF15202_consen 8 LVNDLTFSFL 17 (81)
T ss_pred hhchhhHHHH
Confidence 4565555555
No 80
>PF13129 DUF3953: Protein of unknown function (DUF3953)
Probab=36.82 E-value=29 Score=23.84 Aligned_cols=20 Identities=40% Similarity=0.715 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhhhhhcccC
Q psy12992 161 FLLLILLFFFIGLEQRRKND 180 (319)
Q Consensus 161 flllillfffigleqrrknd 180 (319)
+++|-+++|.+|+|+-+|++
T Consensus 2 ~~lLG~m~~~~Gi~e~kk~~ 21 (42)
T PF13129_consen 2 QILLGLMMFIIGIEEIKKER 21 (42)
T ss_pred hHHHHHHHHHHHHHHHHhcc
Confidence 45667888999999988654
No 81
>PF06366 FlhE: Flagellar protein FlhE; InterPro: IPR009420 This family consists of several Enterobacterial FlhE flagellar proteins. The exact function of this family is unknown [].; GO: 0019861 flagellum
Probab=36.78 E-value=31 Score=27.96 Aligned_cols=23 Identities=30% Similarity=0.671 Sum_probs=19.3
Q ss_pred CeeeEEEEeeeeccc------cccccCCc
Q psy12992 79 GKVITKVRWEVNLLG------RAWQCNSP 101 (319)
Q Consensus 79 gkvitkvrwevnllg------rawqcnsp 101 (319)
+-+||.|.|..+|++ ++|-|+.-
T Consensus 26 ~~~it~V~WRy~l~~~~P~gL~v~LC~~~ 54 (106)
T PF06366_consen 26 SATITRVSWRYQLLSPPPAGLQVRLCSPT 54 (106)
T ss_pred CCEEEEEEEEEEECCCCCCCeEEEecCCC
Confidence 568999999999998 57888754
No 82
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=36.34 E-value=37 Score=28.60 Aligned_cols=6 Identities=17% Similarity=0.263 Sum_probs=3.0
Q ss_pred hhhhcc
Q psy12992 173 LEQRRK 178 (319)
Q Consensus 173 leqrrk 178 (319)
|++|.+
T Consensus 33 LeeR~~ 38 (154)
T PRK06568 33 LDAKIL 38 (154)
T ss_pred HHHHHH
Confidence 455543
No 83
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=35.86 E-value=24 Score=30.69 Aligned_cols=27 Identities=33% Similarity=0.714 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCcc
Q psy12992 157 FIVIFLLLILLFFFIGLEQRRKNDNKS 183 (319)
Q Consensus 157 fiviflllillfffigleqrrkndnks 183 (319)
||...++|+++||.|--..|.+||+..
T Consensus 65 fiatliillviffviy~re~~~~~~gt 91 (150)
T PF06084_consen 65 FIATLIILLVIFFVIYSREEEKNNNGT 91 (150)
T ss_pred HHHHHHHHHHHhheeEeccccccCCCc
Confidence 444444555667888777788887643
No 84
>PHA02650 hypothetical protein; Provisional
Probab=35.65 E-value=54 Score=26.38 Aligned_cols=6 Identities=83% Similarity=1.320 Sum_probs=2.6
Q ss_pred Eeecce
Q psy12992 132 IKSHSW 137 (319)
Q Consensus 132 ikshsw 137 (319)
||+-.|
T Consensus 41 ~~~~~~ 46 (81)
T PHA02650 41 IKSVSW 46 (81)
T ss_pred ccccCC
Confidence 344444
No 85
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=35.64 E-value=19 Score=29.56 Aligned_cols=8 Identities=13% Similarity=0.231 Sum_probs=4.5
Q ss_pred ceEEeehH
Q psy12992 136 SWVIRVNF 143 (319)
Q Consensus 136 swvirvnf 143 (319)
.|.+|+-|
T Consensus 33 ~~~VRl~~ 40 (118)
T PRK10697 33 VKLVRIIV 40 (118)
T ss_pred HHHHHHHH
Confidence 46667643
No 86
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=35.62 E-value=38 Score=25.51 Aligned_cols=16 Identities=50% Similarity=0.995 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhh
Q psy12992 158 IVIFLLLILLFFFIGL 173 (319)
Q Consensus 158 iviflllillfffigl 173 (319)
|-||++.+.+||.||+
T Consensus 6 iG~~~~~~~I~~lIgf 21 (53)
T PF13131_consen 6 IGIILFTIFIFFLIGF 21 (53)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555555555555
No 87
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=35.48 E-value=55 Score=22.99 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q psy12992 155 FLFIVIFLLLI 165 (319)
Q Consensus 155 flfivifllli 165 (319)
++|.++|++..
T Consensus 223 ~~F~i~f~~~~ 233 (237)
T PF02932_consen 223 ILFPIAFILFN 233 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 88
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=35.45 E-value=41 Score=27.50 Aligned_cols=6 Identities=33% Similarity=0.932 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy12992 159 VIFLLL 164 (319)
Q Consensus 159 viflll 164 (319)
+.|++|
T Consensus 26 InFliL 31 (173)
T PRK13453 26 LTFIVL 31 (173)
T ss_pred HHHHHH
Confidence 333333
No 89
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=35.20 E-value=48 Score=28.03 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q psy12992 155 FLFIVIFLLLILLF 168 (319)
Q Consensus 155 flfiviflllillf 168 (319)
+||+++|+++.++|
T Consensus 10 ~l~~~~~~~~~~~~ 23 (334)
T TIGR00998 10 VLLIVVAGAYAIYW 23 (334)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555444433
No 90
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=35.12 E-value=45 Score=25.32 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhhh
Q psy12992 160 IFLLLILLFFFIGL 173 (319)
Q Consensus 160 iflllillfffigl 173 (319)
.|+.|++|+|++.+
T Consensus 18 VF~fL~lLi~~i~~ 31 (82)
T TIGR01195 18 VFLFLSLLIYAVRG 31 (82)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444445544444
No 91
>PF09988 DUF2227: Uncharacterized metal-binding protein (DUF2227); InterPro: IPR019250 This entry represents hypothetical bacterial proteins that possess metal binding properties; however, their exact function has not yet been determined.
Probab=35.00 E-value=68 Score=27.50 Aligned_cols=7 Identities=43% Similarity=0.463 Sum_probs=5.0
Q ss_pred ecceEEe
Q psy12992 134 SHSWVIR 140 (319)
Q Consensus 134 shswvir 140 (319)
||.|+|=
T Consensus 80 SH~piiG 86 (169)
T PF09988_consen 80 SHGPIIG 86 (169)
T ss_pred cccchhh
Confidence 6888763
No 92
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=34.98 E-value=41 Score=27.91 Aligned_cols=6 Identities=33% Similarity=0.601 Sum_probs=2.8
Q ss_pred hhhhcc
Q psy12992 173 LEQRRK 178 (319)
Q Consensus 173 leqrrk 178 (319)
+++|+.
T Consensus 60 l~~R~~ 65 (181)
T PRK13454 60 LAERQG 65 (181)
T ss_pred HHHHHH
Confidence 455543
No 93
>PRK10352 nickel transporter permease NikB; Provisional
Probab=34.85 E-value=56 Score=29.17 Aligned_cols=28 Identities=18% Similarity=0.620 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy12992 147 IFLMRRVFFLFIVIFLLLILLFFFIGLE 174 (319)
Q Consensus 147 iflmrrvfflfiviflllillfffigle 174 (319)
-|+.||.+..++++|++..+.|+++-+-
T Consensus 3 ~~i~~rl~~~~~~l~~v~~~~F~l~~~~ 30 (314)
T PRK10352 3 RYILRRLLLLIPMLLAASVIIFLMLRLG 30 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3678999888888888887888776553
No 94
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=34.69 E-value=63 Score=23.98 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q psy12992 152 RVFFLFIVIFLLL 164 (319)
Q Consensus 152 rvfflfiviflll 164 (319)
+...+|+++|+++
T Consensus 37 ~~~~i~~~~~i~~ 49 (59)
T PF09889_consen 37 KTQYIFFGIFILF 49 (59)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 95
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=34.36 E-value=25 Score=35.46 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=19.4
Q ss_pred ecceEEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12992 134 SHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGL 173 (319)
Q Consensus 134 shswvirvnflvfiflmrrvfflfiviflllillfffigl 173 (319)
-.+|+..+..++== +-|-+++.+++|+||.+|+.|+-|+
T Consensus 462 ves~~~~Lk~s~pK-anK~LWIsvAliVLLAaLlSfLtg~ 500 (538)
T PF05781_consen 462 VESWASYLKTSFPK-ANKVLWISVALIVLLAALLSFLTGL 500 (538)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35566554433321 2233344445555566666666664
No 96
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=34.25 E-value=35 Score=30.64 Aligned_cols=18 Identities=39% Similarity=0.789 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy12992 157 FIVIFLLLILLFFFIGLE 174 (319)
Q Consensus 157 fiviflllillfffigle 174 (319)
++++|+++++++||+|--
T Consensus 9 ~~l~~l~~y~~~y~~G~~ 26 (321)
T PF07946_consen 9 IFLAFLLLYVVNYFIGKS 26 (321)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666777788888843
No 97
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=34.12 E-value=42 Score=24.38 Aligned_cols=9 Identities=33% Similarity=0.545 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy12992 161 FLLLILLFF 169 (319)
Q Consensus 161 flllillff 169 (319)
|+++++|.+
T Consensus 10 ~iv~~lLg~ 18 (50)
T PF12606_consen 10 FIVMGLLGL 18 (50)
T ss_pred HHHHHHHHH
Confidence 333333333
No 98
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=34.10 E-value=26 Score=30.46 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy12992 153 VFFLFIVIFLLLILLFFFI 171 (319)
Q Consensus 153 vfflfiviflllillfffi 171 (319)
++.++||++++++++||++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~ 31 (346)
T PRK10476 13 LPALAIVALAIVALVFVIW 31 (346)
T ss_pred chhHHHHHHHHHHHHHHhe
Confidence 4455666666666666555
No 99
>PRK10819 transport protein TonB; Provisional
Probab=33.93 E-value=38 Score=30.03 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12992 145 VFIFLMRRVFFLFIVIFLL 163 (319)
Q Consensus 145 vfiflmrrvfflfivifll 163 (319)
...|++||..+.+|+..+|
T Consensus 4 ~~~~l~rr~~~~li~Sv~l 22 (246)
T PRK10819 4 MTLDLPRRFPWPTLLSVGL 22 (246)
T ss_pred cccchhhhHHHHHHHHHHH
Confidence 3457788887766654333
No 100
>PRK09471 oppB oligopeptide transporter permease; Reviewed
Probab=32.39 E-value=67 Score=28.10 Aligned_cols=26 Identities=31% Similarity=0.742 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12992 148 FLMRRVFFLFIVIFLLLILLFFFIGL 173 (319)
Q Consensus 148 flmrrvfflfiviflllillfffigl 173 (319)
|+.||++..++++|++.++.|+.+-+
T Consensus 4 ~~~~r~~~~~~~l~~~~~~~F~l~~~ 29 (306)
T PRK09471 4 FILRRCLEAIPTLFILITISFFMMRL 29 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67799999888888888888887765
No 101
>PF14348 DUF4400: Domain of unknown function (DUF4400)
Probab=32.23 E-value=1e+02 Score=25.47 Aligned_cols=44 Identities=25% Similarity=0.611 Sum_probs=28.3
Q ss_pred cceEEeehHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhcc
Q psy12992 135 HSWVIRVNFLVFIFLMRRVF-FLFIVIFLLLILLFFFIGLEQRRK 178 (319)
Q Consensus 135 hswvirvnflvfiflmrrvf-flfiviflllillfffigleqrrk 178 (319)
..|+.-+-++++.|+.|-.. ++.+..|+++++..++=|+-+|+-
T Consensus 91 ~~y~~a~~~~~~~~~~Rl~il~~~lp~~~~~~~~~~vDGl~~R~i 135 (198)
T PF14348_consen 91 RDYLLAAWYVLYVFLIRLAILLLWLPLFLLFALAALVDGLVRRDI 135 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556667777777543 334556666677777789988864
No 102
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=32.01 E-value=1.2e+02 Score=22.69 Aligned_cols=25 Identities=24% Similarity=0.566 Sum_probs=14.1
Q ss_pred EEeehHHHHHH-----HHHHHHHHHHHHHH
Q psy12992 138 VIRVNFLVFIF-----LMRRVFFLFIVIFL 162 (319)
Q Consensus 138 virvnflvfif-----lmrrvfflfivifl 162 (319)
.+..|+..|+| +.|+....++++++
T Consensus 35 ~~~fnw~Af~f~~~w~l~r~mw~~~~~~~~ 64 (108)
T PF10947_consen 35 KPSFNWWAFFFGPLWLLYRKMWLYAIIFLA 64 (108)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567776654 56666555544333
No 103
>MTH00260 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=31.79 E-value=61 Score=23.31 Aligned_cols=19 Identities=16% Similarity=0.466 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy12992 154 FFLFIVIFLLLILLFFFIG 172 (319)
Q Consensus 154 fflfiviflllillfffig 172 (319)
|++|+++|++++.+..|+-
T Consensus 13 ~~~f~~~~~~~~~~~~~~~ 31 (53)
T MTH00260 13 MIIFWFILLIFASSMWWSQ 31 (53)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3455556666555555553
No 104
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=31.38 E-value=47 Score=31.38 Aligned_cols=6 Identities=17% Similarity=0.518 Sum_probs=3.0
Q ss_pred hhhhcc
Q psy12992 173 LEQRRK 178 (319)
Q Consensus 173 leqrrk 178 (319)
+++|++
T Consensus 30 l~~R~~ 35 (445)
T PRK13428 30 MAARQD 35 (445)
T ss_pred HHHHHH
Confidence 455554
No 105
>TIGR02459 CbtB cobalt transporter subunit CbtB (proposed). This model represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems. Evidence for this assignment includes 1) prediction of a single trans-membrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional trans-membrane segments.
Probab=31.35 E-value=57 Score=24.78 Aligned_cols=14 Identities=36% Similarity=0.897 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhhhh
Q psy12992 162 LLLILLFFFIGLEQ 175 (319)
Q Consensus 162 lllillfffigleq 175 (319)
+|.++++||+|.+|
T Consensus 27 ~lgl~~ly~vG~~q 40 (60)
T TIGR02459 27 LLGLFLVYFVGFSH 40 (60)
T ss_pred HHHHHHHHHHhhcc
Confidence 44455667899988
No 106
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=31.20 E-value=95 Score=24.18 Aligned_cols=36 Identities=28% Similarity=0.637 Sum_probs=23.2
Q ss_pred eEEEEeecceEEeehHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12992 128 IRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILL 167 (319)
Q Consensus 128 irvvikshswvirvnflvfiflmrrvfflfiviflllill 167 (319)
+-+..-+.-|- +...||.|--+.|+|||+-+...+|
T Consensus 6 ~tIEFtskFW~----YFtLi~M~lti~~~~Iv~si~~AIL 41 (64)
T PF03579_consen 6 TTIEFTSKFWT----YFTLIFMMLTIGFFFIVTSIMAAIL 41 (64)
T ss_pred EEeeeccccch----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455553 4566778888888888887766555
No 107
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=31.10 E-value=55 Score=32.83 Aligned_cols=21 Identities=43% Similarity=0.532 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy12992 155 FLFIVIFLLLILLFFFIGLEQ 175 (319)
Q Consensus 155 flfiviflllillfffigleq 175 (319)
+|+||+|+++-|++-..|+..
T Consensus 424 llLIv~~~~lGLl~G~~G~~~ 444 (806)
T PF05478_consen 424 LLLIVLCLLLGLLCGCCGYRR 444 (806)
T ss_pred HHHHHHHHHHHHHHhhccCCC
Confidence 344444555555555555443
No 108
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=31.04 E-value=1.2e+02 Score=20.16 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHhh
Q psy12992 159 VIFLLLILLFFFIG 172 (319)
Q Consensus 159 viflllillfffig 172 (319)
.|.+++.++.|++|
T Consensus 50 ~iL~~~a~is~~~~ 63 (64)
T smart00831 50 YILLAAAVLSALLG 63 (64)
T ss_pred HHHHHHHHHHHHHc
Confidence 33334444555544
No 109
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=30.79 E-value=1.1e+02 Score=25.03 Aligned_cols=30 Identities=13% Similarity=0.446 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12992 142 NFLVFIFLMRRVFFLFIVIFLLLILLFFFI 171 (319)
Q Consensus 142 nflvfiflmrrvfflfiviflllillfffi 171 (319)
++.-++..++|-++++++++++..++.+++
T Consensus 9 ~l~~l~~~l~r~~~~ill~~ll~~~~a~~~ 38 (226)
T TIGR01006 9 DLLQLLKKLWKRKLLILIVALIFLIISFIY 38 (226)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666555544443
No 110
>COG0795 Predicted permeases [General function prediction only]
Probab=30.51 E-value=94 Score=27.15 Aligned_cols=30 Identities=27% Similarity=0.539 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy12992 146 FIFLMRRVFFLFIVIFLLLILLFFFIGLEQ 175 (319)
Q Consensus 146 fiflmrrvfflfiviflllillfffigleq 175 (319)
.-++.|+++..|+.+++.++.+++++.+-.
T Consensus 5 ~rYl~r~~l~~~l~~ll~l~~i~~~~~~~~ 34 (364)
T COG0795 5 DRYLLREYLKTFLAILLVLLAILLIIDLLE 34 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888888888777766665544
No 111
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=30.33 E-value=68 Score=24.62 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=6.6
Q ss_pred ccCCcccccccc
Q psy12992 97 QCNSPKQKWMWH 108 (319)
Q Consensus 97 qcnspkqkwmwh 108 (319)
-|+.++..=..|
T Consensus 53 ~C~~~kp~Rs~H 64 (174)
T PF01529_consen 53 TCKIIKPPRSHH 64 (174)
T ss_pred ccCCcCCCccee
Confidence 366666554444
No 112
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB. This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.
Probab=30.29 E-value=74 Score=27.74 Aligned_cols=26 Identities=31% Similarity=0.699 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12992 148 FLMRRVFFLFIVIFLLLILLFFFIGL 173 (319)
Q Consensus 148 flmrrvfflfiviflllillfffigl 173 (319)
|+.||++..++++|++.++.|+.+-+
T Consensus 4 ~~~~r~~~~~~~l~~~~~~~F~l~~~ 29 (314)
T TIGR02789 4 YILRRLLLLIPVVLAASLLAFILIHL 29 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899988888888777777777654
No 113
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=29.77 E-value=75 Score=29.52 Aligned_cols=24 Identities=25% Similarity=0.406 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12992 143 FLVFIFLMRRVFFLFIVIFLLLIL 166 (319)
Q Consensus 143 flvfiflmrrvfflfiviflllil 166 (319)
|+..-+.-|..|++-+++|+++|+
T Consensus 76 F~~~r~~kRk~~~~G~~~f~~ll~ 99 (382)
T TIGR02876 76 FLFKRLRKRPGILIGILLFLAIVY 99 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445556655666655444
No 114
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=29.50 E-value=82 Score=29.01 Aligned_cols=16 Identities=44% Similarity=0.519 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12992 149 LMRRVFFLFIVIFLLL 164 (319)
Q Consensus 149 lmrrvfflfiviflll 164 (319)
.-|+.|++-+++|+++
T Consensus 85 ~~R~~~~~G~~~f~~~ 100 (385)
T PF06898_consen 85 RRRKGFVAGIVLFLAL 100 (385)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 115
>PRK10914 dipeptide transporter permease DppB; Provisional
Probab=29.46 E-value=75 Score=28.58 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12992 147 IFLMRRVFFLFIVIFLLLILLFFFIGL 173 (319)
Q Consensus 147 iflmrrvfflfiviflllillfffigl 173 (319)
-|+.||++..++++|++.++.|+.+-+
T Consensus 3 ~~i~~Rl~~~~~~l~~v~~~~F~l~~~ 29 (339)
T PRK10914 3 QFILRRLGLVIPTFIGITLLTFAFVHM 29 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367899988888888877777777654
No 116
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=29.22 E-value=1.2e+02 Score=29.92 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=8.0
Q ss_pred EEEeecceEEeehHH
Q psy12992 130 VVIKSHSWVIRVNFL 144 (319)
Q Consensus 130 vvikshswvirvnfl 144 (319)
|+|---+..|.++..
T Consensus 28 VlI~~~~~~ie~Sl~ 42 (400)
T COG3071 28 VLIQTDNYNIEMSLT 42 (400)
T ss_pred eEEEecceeeeeeHH
Confidence 455555556665543
No 117
>PRK13553 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=28.65 E-value=58 Score=30.05 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy12992 149 LMRRVFFLFIVIFLLLILLFFFIGLEQRRK 178 (319)
Q Consensus 149 lmrrvfflfiviflllillfffigleqrrk 178 (319)
+..-+|.+|+++.++.++-|++||+|+-..
T Consensus 210 v~~~i~v~f~~lGl~sL~af~~ig~~~~~~ 239 (258)
T PRK13553 210 VKWALSVFFLVLGLLTLAAYIKIGYENADN 239 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhcccC
Confidence 334456677778888888899999986543
No 118
>PHA03030 hypothetical protein; Provisional
Probab=28.30 E-value=48 Score=28.23 Aligned_cols=8 Identities=38% Similarity=1.040 Sum_probs=4.3
Q ss_pred HHHHhhhh
Q psy12992 167 LFFFIGLE 174 (319)
Q Consensus 167 lfffigle 174 (319)
+||+|-.-
T Consensus 17 iffYI~~I 24 (122)
T PHA03030 17 IFFYIRII 24 (122)
T ss_pred HHHHheee
Confidence 45666543
No 119
>PHA02689 ORF051 putative membrane protein; Provisional
Probab=28.25 E-value=69 Score=27.49 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q psy12992 156 LFIVIFLLLILLFFFIGLEQR 176 (319)
Q Consensus 156 lfiviflllillfffigleqr 176 (319)
++.=|++.++|+|+|.+-|-+
T Consensus 34 v~FEi~va~~L~~~FFk~Ei~ 54 (128)
T PHA02689 34 AVLELLLALALALVFFRDELG 54 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333445566677777776643
No 120
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=28.12 E-value=73 Score=26.71 Aligned_cols=9 Identities=67% Similarity=0.980 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy12992 160 IFLLLILLF 168 (319)
Q Consensus 160 iflllillf 168 (319)
|++|+++++
T Consensus 52 I~~L~ll~l 60 (149)
T PF11694_consen 52 IALLLLLLL 60 (149)
T ss_pred HHHHHHHHH
Confidence 333333333
No 121
>KOG2431|consensus
Probab=28.12 E-value=63 Score=32.85 Aligned_cols=23 Identities=48% Similarity=0.995 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy12992 150 MRRVFFLFIVIFLLLILLFFFIG 172 (319)
Q Consensus 150 mrrvfflfiviflllillfffig 172 (319)
-|..|.|||..|+|+++|.+.+-
T Consensus 8 ~r~w~ilf~~~~~~~v~l~~~~~ 30 (546)
T KOG2431|consen 8 RRKWFILFILAFLLFVLLLLYIN 30 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 46678889999998888888875
No 122
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=28.11 E-value=74 Score=31.75 Aligned_cols=13 Identities=23% Similarity=0.667 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q psy12992 148 FLMRRVFFLFIVI 160 (319)
Q Consensus 148 flmrrvfflfivi 160 (319)
|.||-+||+.-+|
T Consensus 23 YYlryfFlF~SLI 35 (442)
T PF06637_consen 23 YYLRYFFLFVSLI 35 (442)
T ss_pred HHHHHHHHHHHHH
Confidence 4555544443344
No 123
>MTH00186 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=28.08 E-value=79 Score=21.58 Aligned_cols=14 Identities=7% Similarity=0.425 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q psy12992 157 FIVIFLLLILLFFF 170 (319)
Q Consensus 157 fiviflllillfff 170 (319)
|++++++++..++|
T Consensus 16 ~~~~~~~~~~~~~~ 29 (52)
T MTH00186 16 IWLLIFLAMSMTWW 29 (52)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 124
>PF10694 DUF2500: Protein of unknown function (DUF2500); InterPro: IPR019635 This entry represents a group of proteins that is largely confined to the Gammaproteobacteria. The function is not known. ; PDB: 3RD4_D 2L0C_A 3Q6C_N.
Probab=28.03 E-value=20 Score=27.70 Aligned_cols=10 Identities=40% Similarity=0.524 Sum_probs=0.0
Q ss_pred hhhhhcccCC
Q psy12992 172 GLEQRRKNDN 181 (319)
Q Consensus 172 gleqrrkndn 181 (319)
+.-+-.+|++
T Consensus 22 ~~~~~~~n~~ 31 (110)
T PF10694_consen 22 QIRQWAKNNN 31 (110)
T ss_dssp ----------
T ss_pred HHHHHHhcCC
Confidence 3444445544
No 125
>PRK15110 antimicrobial peptide ABC transporter permease SapB; Provisional
Probab=27.68 E-value=86 Score=27.86 Aligned_cols=26 Identities=31% Similarity=0.653 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12992 148 FLMRRVFFLFIVIFLLLILLFFFIGL 173 (319)
Q Consensus 148 flmrrvfflfiviflllillfffigl 173 (319)
|+.||++..++++|++.++.|+.+-+
T Consensus 4 ~~~~rl~~~~~~l~~v~~~~f~l~~~ 29 (321)
T PRK15110 4 FTLRRLLLLIVTLFLLTLVGFSLSYF 29 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899988888888877777776654
No 126
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=27.49 E-value=1.6e+02 Score=21.76 Aligned_cols=11 Identities=36% Similarity=0.489 Sum_probs=8.1
Q ss_pred hhhhhhcccCC
Q psy12992 171 IGLEQRRKNDN 181 (319)
Q Consensus 171 igleqrrkndn 181 (319)
+.+.-||=+|-
T Consensus 63 lal~vRRlhD~ 73 (120)
T PF05656_consen 63 LALTVRRLHDI 73 (120)
T ss_pred HHHHhhhhhcC
Confidence 66778887774
No 127
>MTH00147 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=27.18 E-value=84 Score=22.18 Aligned_cols=17 Identities=12% Similarity=0.493 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy12992 155 FLFIVIFLLLILLFFFI 171 (319)
Q Consensus 155 flfiviflllillfffi 171 (319)
++|+++++++..+.+|.
T Consensus 14 ~~~~~~~~~~~~~~~~~ 30 (51)
T MTH00147 14 ILFWSAVIIVSVIIWWS 30 (51)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455555555555554
No 128
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=27.04 E-value=3.9 Score=32.21 Aligned_cols=13 Identities=46% Similarity=0.930 Sum_probs=3.3
Q ss_pred HHHHHHHHHHHHH
Q psy12992 151 RRVFFLFIVIFLL 163 (319)
Q Consensus 151 rrvfflfivifll 163 (319)
||+|.|||-|||+
T Consensus 65 rrwlwLlikl~lV 77 (81)
T PF14812_consen 65 RRWLWLLIKLFLV 77 (81)
T ss_dssp ------TTTTHCC
T ss_pred chhHHHHHHHHHH
Confidence 3455555544443
No 129
>COG4089 Predicted membrane protein [Function unknown]
Probab=26.84 E-value=76 Score=29.52 Aligned_cols=7 Identities=29% Similarity=0.520 Sum_probs=2.7
Q ss_pred HHHHHHH
Q psy12992 153 VFFLFIV 159 (319)
Q Consensus 153 vfflfiv 159 (319)
.|+||..
T Consensus 16 ~f~l~l~ 22 (235)
T COG4089 16 PFRLLLA 22 (235)
T ss_pred HHHHHHH
Confidence 3334333
No 130
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=26.65 E-value=86 Score=26.55 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy12992 150 MRRVFFLFIVIFLLLILLFFFI 171 (319)
Q Consensus 150 mrrvfflfiviflllillfffi 171 (319)
.+.++..|++++++++++++++
T Consensus 4 ~~~~l~~f~~~l~~~~~i~~~~ 25 (354)
T PF03739_consen 4 LKEFLKTFLLVLLSFTGIFLII 25 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 131
>PRK15133 microcin C ABC transporter permease YejB; Provisional
Probab=26.58 E-value=90 Score=28.88 Aligned_cols=26 Identities=19% Similarity=0.729 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12992 148 FLMRRVFFLFIVIFLLLILLFFFIGL 173 (319)
Q Consensus 148 flmrrvfflfiviflllillfffigl 173 (319)
|+.||++..++++|++..+.|+.+-+
T Consensus 4 ~i~~Rl~~~i~~l~~v~~i~F~l~~~ 29 (364)
T PRK15133 4 YLIRRLLLVIPTLWAIITINFFIVQI 29 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57799888888888877777776644
No 132
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=26.46 E-value=76 Score=25.48 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q psy12992 143 FLVFIFLMRRV 153 (319)
Q Consensus 143 flvfiflmrrv 153 (319)
+.+|-|++-+-
T Consensus 10 Li~~~fi~~k~ 20 (83)
T PF05814_consen 10 LIVLGFIFDKN 20 (83)
T ss_pred HHHHHHHHccc
Confidence 34555666554
No 133
>PF10694 DUF2500: Protein of unknown function (DUF2500); InterPro: IPR019635 This entry represents a group of proteins that is largely confined to the Gammaproteobacteria. The function is not known. ; PDB: 3RD4_D 2L0C_A 3Q6C_N.
Probab=26.45 E-value=22 Score=27.45 Aligned_cols=24 Identities=29% Similarity=0.694 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccc
Q psy12992 156 LFIVIFLLLILLFFFIGLEQRRKN 179 (319)
Q Consensus 156 lfiviflllillfffigleqrrkn 179 (319)
+|+++|+++|.+++|.-..+++..
T Consensus 3 ~f~i~~~iii~~~~~~~~~~~~~~ 26 (110)
T PF10694_consen 3 FFIIVFIIIIGIIIFVFIRQIRQW 26 (110)
T ss_dssp ------------------------
T ss_pred EeHHhhhhhhHHHHHHHHHHHHHH
Confidence 445555555656666666555443
No 134
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=26.44 E-value=78 Score=28.50 Aligned_cols=12 Identities=17% Similarity=0.346 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhh
Q psy12992 161 FLLLILLFFFIG 172 (319)
Q Consensus 161 flllillfffig 172 (319)
|++++++|++++
T Consensus 29 ~~~~~l~~~~~~ 40 (421)
T TIGR03794 29 IVVAALAWGIFG 40 (421)
T ss_pred HHHHHHHHHhhc
Confidence 344444444444
No 135
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=26.24 E-value=1.2e+02 Score=26.99 Aligned_cols=10 Identities=30% Similarity=0.288 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q psy12992 147 IFLMRRVFFL 156 (319)
Q Consensus 147 iflmrrvffl 156 (319)
|+.-|+.+++
T Consensus 9 il~rr~~lil 18 (444)
T TIGR03017 9 ILKARYWIVL 18 (444)
T ss_pred HHHHHHHHHH
Confidence 3444443333
No 136
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.81 E-value=65 Score=25.78 Aligned_cols=26 Identities=42% Similarity=0.556 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccc
Q psy12992 153 VFFLFIVIFLLLILLFFFIGLEQRRKN 179 (319)
Q Consensus 153 vfflfiviflllillfffigleqrrkn 179 (319)
+|+|-++||||+|++ .-||.--.||.
T Consensus 3 t~lltFg~Fllvi~g-MsiG~I~krk~ 28 (77)
T COG2991 3 TFLLTFGIFLLVIAG-MSIGYIFKRKS 28 (77)
T ss_pred cHHHHHHHHHHHHHH-HhHhhheeccc
Confidence 355556667666654 34565544443
No 137
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=25.68 E-value=1.4e+02 Score=26.53 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=11.5
Q ss_pred EEEEeecceEEeeh-HHHHHHH
Q psy12992 129 RVVIKSHSWVIRVN-FLVFIFL 149 (319)
Q Consensus 129 rvvikshswvirvn-flvfifl 149 (319)
.+||-..+|.=--| ||..+||
T Consensus 229 ~ivlst~s~~Ggkn~~Lgi~yl 250 (278)
T PF03381_consen 229 SIVLSTTSWFGGKNYFLGIAYL 250 (278)
T ss_pred EEEEEeccccCccccHHHHHHH
Confidence 35667777774444 4444433
No 138
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.39 E-value=76 Score=32.07 Aligned_cols=16 Identities=38% Similarity=0.972 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhh
Q psy12992 157 FIVIFLLLILLFFFIG 172 (319)
Q Consensus 157 fiviflllillfffig 172 (319)
.+|+++++||+++|+|
T Consensus 16 ivvv~i~~ilv~if~~ 31 (548)
T COG2268 16 IVVVVILVILVLIFFG 31 (548)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444555555555554
No 139
>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.
Probab=25.28 E-value=1.5e+02 Score=24.85 Aligned_cols=17 Identities=35% Similarity=0.770 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhhhh
Q psy12992 159 VIFLLLILLFFFIGLEQ 175 (319)
Q Consensus 159 viflllillfffigleq 175 (319)
++.+..+..|+|+|+|.
T Consensus 246 ~~~~~~l~~~~~~gl~~ 262 (293)
T PF01062_consen 246 TPPITFLVSFFFLGLEE 262 (293)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455566778888875
No 140
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=25.04 E-value=56 Score=30.70 Aligned_cols=11 Identities=36% Similarity=0.425 Sum_probs=5.8
Q ss_pred cccccCCcccc
Q psy12992 44 QSRRSDNKSQM 54 (319)
Q Consensus 44 qsrrsdnksqm 54 (319)
.+||+..-.|+
T Consensus 39 t~RR~~pipQL 49 (318)
T PF06682_consen 39 TSRRVSPIPQL 49 (318)
T ss_pred ccccCCCCcce
Confidence 35565555553
No 141
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=24.79 E-value=1.5e+02 Score=24.40 Aligned_cols=46 Identities=33% Similarity=0.624 Sum_probs=21.6
Q ss_pred EeecceEEeehHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhcccCCcccc
Q psy12992 132 IKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFF-FIGLEQRRKNDNKSQM 185 (319)
Q Consensus 132 ikshswvirvnflvfiflmrrvfflfiviflllillff-figleqrrkndnksqm 185 (319)
+|.|..-|-+-|.|- ....|+||.+||++. .-|-.|-|.+....++
T Consensus 31 Lka~kysIVI~FWv~--------LA~FV~~lF~iL~~ms~sgspq~~~~~k~~~~ 77 (90)
T PF15183_consen 31 LKANKYSIVIAFWVS--------LAAFVVFLFLILLYMSWSGSPQMRNSEKHHPM 77 (90)
T ss_pred hcccceeeehhHHHH--------HHHHHHHHHHHHHHHhccCCCCcCCccccCCC
Confidence 466666665444432 223345555555544 3344444444443333
No 142
>PF11872 DUF3392: Protein of unknown function (DUF3392); InterPro: IPR021813 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=24.65 E-value=83 Score=25.76 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhhhhhc
Q psy12992 161 FLLLILLFFFIGLEQRR 177 (319)
Q Consensus 161 flllillfffigleqrr 177 (319)
++.+++.|++||.-..|
T Consensus 89 ~~~vl~~F~~iG~lAqR 105 (106)
T PF11872_consen 89 APVVLLSFILIGVLAQR 105 (106)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44567788889875444
No 143
>KOG4753|consensus
Probab=24.58 E-value=76 Score=27.16 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy12992 151 RRVFFLFIVIFLLLILLFFFIG 172 (319)
Q Consensus 151 rrvfflfiviflllillfffig 172 (319)
++|+.+++..+|+++-+|.++|
T Consensus 53 lavvL~~fg~Lli~lg~fl~~~ 74 (124)
T KOG4753|consen 53 LAVVLLVFGLLLIGLGFFLAGG 74 (124)
T ss_pred HHHHHHHHHHHHHHHHHHheec
Confidence 4555555555544444444443
No 144
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=24.50 E-value=1.3e+02 Score=24.04 Aligned_cols=7 Identities=57% Similarity=0.951 Sum_probs=2.8
Q ss_pred HHHHHHh
Q psy12992 165 ILLFFFI 171 (319)
Q Consensus 165 illfffi 171 (319)
|+|.++|
T Consensus 53 i~ll~~i 59 (84)
T PF06143_consen 53 ILLLYNI 59 (84)
T ss_pred HHHHHHH
Confidence 3333444
No 145
>COG3166 PilN Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.15 E-value=72 Score=28.15 Aligned_cols=52 Identities=25% Similarity=0.190 Sum_probs=33.8
Q ss_pred EEeehHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhhhhcccCCcccccccc
Q psy12992 138 VIRVNFLVFIFLM-----RRVFFLFIVIFLLLILLFFFIGLEQRRKNDNKSQMGSGL 189 (319)
Q Consensus 138 virvnflvfiflm-----rrvfflfiviflllillfffigleqrrkndnksqmgsgl 189 (319)
+.+||+|.+.--+ ++++.+.-+.-++.|+++|.+|+-+.+.-++-.+-+--|
T Consensus 4 l~~vNlLpwr~~r~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~L 60 (206)
T COG3166 4 LPGVNLLPWRVERRKQARLQFWLLLGGAVLLGIAALALGGLLQDRQIAEQQQRNALL 60 (206)
T ss_pred cccCCcchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhhHhHHHHH
Confidence 4678988887666 233444455667788888888888776555544444334
No 146
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=24.13 E-value=81 Score=26.90 Aligned_cols=14 Identities=43% Similarity=0.712 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q psy12992 155 FLFIVIFLLLILLF 168 (319)
Q Consensus 155 flfiviflllillf 168 (319)
|.++|.|++|.+++
T Consensus 14 fw~iI~FlILy~ll 27 (155)
T PRK06569 14 FWLIVTFGLLYIFV 27 (155)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444554444443
No 147
>PRK15081 glutathione ABC transporter permease GsiC; Provisional
Probab=24.09 E-value=1.1e+02 Score=27.25 Aligned_cols=26 Identities=23% Similarity=0.725 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12992 148 FLMRRVFFLFIVIFLLLILLFFFIGL 173 (319)
Q Consensus 148 flmrrvfflfiviflllillfffigl 173 (319)
|+.||++..++++|++..+.||.+-+
T Consensus 4 ~i~~r~~~~~~~l~~~~~i~F~l~~~ 29 (306)
T PRK15081 4 YVIKRLLGLIPTLLIVAVLVFLFVHL 29 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789888888888777777777654
No 148
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=23.96 E-value=86 Score=23.13 Aligned_cols=20 Identities=40% Similarity=0.776 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy12992 154 FFLFIVIFLLLILLFFFIGL 173 (319)
Q Consensus 154 fflfiviflllillfffigl 173 (319)
.++|.+||+++.+.|++.+.
T Consensus 4 ~~~~~~i~l~~g~~~~~~~~ 23 (148)
T PF12158_consen 4 LLLFGIIFLLIGLVLLIGGI 23 (148)
T ss_pred hHHHHHHHHHHHHHHHHHHH
No 149
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=23.95 E-value=1.1e+02 Score=27.48 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhhhhhhccc
Q psy12992 158 IVIFLLLILLFFFIGLEQRRKN 179 (319)
Q Consensus 158 iviflllillfffigleqrrkn 179 (319)
|.|.+|+|.+...|-|-.+||.
T Consensus 36 iaIvVliiiiivli~lcssRKk 57 (189)
T PF05568_consen 36 IAIVVLIIIIIVLIYLCSSRKK 57 (189)
T ss_pred HHHHHHHHHHHHHHHHHhhhhH
Confidence 3333444444444555566664
No 150
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=23.93 E-value=75 Score=30.59 Aligned_cols=10 Identities=30% Similarity=0.670 Sum_probs=4.5
Q ss_pred Hhhhhhhccc
Q psy12992 170 FIGLEQRRKN 179 (319)
Q Consensus 170 figleqrrkn 179 (319)
+||..-||-+
T Consensus 40 Lv~MrlR~v~ 49 (316)
T PF12127_consen 40 LVGMRLRRVP 49 (316)
T ss_pred hhhhhccCCC
Confidence 4444444443
No 151
>PHA02973 hypothetical protein; Provisional
Probab=23.62 E-value=78 Score=26.31 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=6.2
Q ss_pred ccCCcccccc
Q psy12992 178 KNDNKSQMGS 187 (319)
Q Consensus 178 kndnksqmgs 187 (319)
+..||-||+-
T Consensus 21 ~pTNKmq~aV 30 (102)
T PHA02973 21 KRTNKMDIGI 30 (102)
T ss_pred cccchhhhhh
Confidence 4567777763
No 152
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=23.51 E-value=67 Score=29.76 Aligned_cols=16 Identities=31% Similarity=0.708 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHh
Q psy12992 156 LFIVIFLLLILLFFFI 171 (319)
Q Consensus 156 lfiviflllillfffi 171 (319)
+|+++.++++++++|+
T Consensus 11 ~l~~lvll~~~~~~~~ 26 (604)
T PF05170_consen 11 ILAVLVLLVVALPFLL 26 (604)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3333333334444444
No 153
>PRK09835 sensor kinase CusS; Provisional
Probab=23.44 E-value=1.6e+02 Score=25.06 Aligned_cols=39 Identities=10% Similarity=0.356 Sum_probs=0.0
Q ss_pred cceEEeehHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12992 135 HSWVIRVNFLV-----FIFLMRRVFFLFIVIFLLLILLFFFIGL 173 (319)
Q Consensus 135 hswvirvnflv-----fiflmrrvfflfiviflllillfffigl 173 (319)
..|++.+-..+ ++..+...++++++++++++++++++..
T Consensus 163 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (482)
T PRK09835 163 PIYTLLIALSIDFHLHYINDLKNKLIMTASVISLLIVFIVLLAV 206 (482)
T ss_pred CcEEEEEEeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 154
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=23.24 E-value=97 Score=28.68 Aligned_cols=11 Identities=27% Similarity=0.105 Sum_probs=6.2
Q ss_pred eEEEEeecceE
Q psy12992 128 IRVVIKSHSWV 138 (319)
Q Consensus 128 irvvikshswv 138 (319)
+.--+|+|+=+
T Consensus 105 ~ent~k~~~~~ 115 (227)
T PF05399_consen 105 TENTSKSQSEI 115 (227)
T ss_pred cCcCCCCcccc
Confidence 44456777443
No 155
>KOG3927|consensus
Probab=23.09 E-value=1.3e+02 Score=28.26 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy12992 147 IFLMRRVFFLFIVIFLLLILLFFFIGLE 174 (319)
Q Consensus 147 iflmrrvfflfiviflllillfffigle 174 (319)
|+|.--||+.|+++|..+.+-|||--|.
T Consensus 47 IllfYivFY~~la~lf~~~~~~~~~tid 74 (300)
T KOG3927|consen 47 ILLFYIVFYGVLAALFAGCMWFMLQTID 74 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5555567777777777776666665554
No 156
>PHA02650 hypothetical protein; Provisional
Probab=23.01 E-value=86 Score=25.24 Aligned_cols=6 Identities=33% Similarity=0.661 Sum_probs=2.2
Q ss_pred HHHHhh
Q psy12992 167 LFFFIG 172 (319)
Q Consensus 167 lfffig 172 (319)
+|++.-
T Consensus 66 ~flYLK 71 (81)
T PHA02650 66 SFFVFK 71 (81)
T ss_pred HHHHHH
Confidence 333333
No 157
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=22.98 E-value=1.1e+02 Score=25.67 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q psy12992 152 RVFFLFIVIFL 162 (319)
Q Consensus 152 rvfflfivifl 162 (319)
|++++|+++++
T Consensus 7 kL~l~~~~l~~ 17 (457)
T TIGR01386 7 RLALLFAAVTA 17 (457)
T ss_pred hHHHHHHHHHH
Confidence 44444443333
No 158
>KOG4463|consensus
Probab=22.94 E-value=77 Score=30.53 Aligned_cols=27 Identities=33% Similarity=0.376 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12992 143 FLVFIFLMRRVFFLFIVIFLLLILLFF 169 (319)
Q Consensus 143 flvfiflmrrvfflfiviflllillff 169 (319)
|++||.+|--+-.|.++||++|.-+||
T Consensus 89 y~~fiv~s~~~~~l~~~il~~l~~~~~ 115 (323)
T KOG4463|consen 89 YSVFIVFSGTVSLLLEVILLSLLKDTT 115 (323)
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888887765543
No 159
>KOG3208|consensus
Probab=22.70 E-value=88 Score=28.96 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy12992 153 VFFLFIVIFLLLILLFFFI 171 (319)
Q Consensus 153 vfflfiviflllillfffi 171 (319)
-+.|-.||-+++||||||+
T Consensus 211 slILa~Vis~C~llllfy~ 229 (231)
T KOG3208|consen 211 SLILAAVISVCTLLLLFYW 229 (231)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5778888888888877775
No 160
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=22.58 E-value=1.1e+02 Score=24.70 Aligned_cols=18 Identities=33% Similarity=0.746 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy12992 156 LFIVIFLLLILLFFFIGL 173 (319)
Q Consensus 156 lfiviflllillfffigl 173 (319)
.+|+.+|+.+..|||.-|
T Consensus 56 ~ail~lL~a~Ya~fyl~l 73 (79)
T PF15168_consen 56 AAILVLLLAFYAFFYLNL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 445555555566666544
No 161
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=22.55 E-value=94 Score=23.58 Aligned_cols=12 Identities=42% Similarity=0.786 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy12992 155 FLFIVIFLLLIL 166 (319)
Q Consensus 155 flfiviflllil 166 (319)
++|++++++.+.
T Consensus 5 ~i~~lii~~~~~ 16 (121)
T PF14276_consen 5 IIFILIIALSIF 16 (121)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 162
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=22.49 E-value=92 Score=26.42 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12992 146 FIFLMRRVFFLFIVIFLLLILLFFFIG 172 (319)
Q Consensus 146 fiflmrrvfflfiviflllillfffig 172 (319)
-+|.+--++|+..|.+|+++++||+..
T Consensus 45 sv~~~~y~l~~~~v~~L~~~~~y~~~~ 71 (122)
T PF04530_consen 45 SVLNDNYVLFVCAVCMLFSILVYLYSS 71 (122)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHheec
Confidence 345666666666666666778888763
No 163
>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=22.36 E-value=1.5e+02 Score=22.23 Aligned_cols=19 Identities=26% Similarity=0.691 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12992 149 LMRRVFFLFIVIFLLLILL 167 (319)
Q Consensus 149 lmrrvfflfiviflllill 167 (319)
.+--+|+++|+++++.+++
T Consensus 9 f~sQ~~Wl~i~f~~ly~l~ 27 (67)
T MTH00169 9 YLTQYIWTLIILFFLFSLL 27 (67)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666555555544
No 164
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=22.30 E-value=1.3e+02 Score=27.33 Aligned_cols=27 Identities=22% Similarity=0.621 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12992 147 IFLMRRVFFLFIVIFLLLILLFFFIGL 173 (319)
Q Consensus 147 iflmrrvfflfiviflllillfffigl 173 (319)
.|+++|++..++++|++.++.|+..-+
T Consensus 3 ~~i~~R~~~~i~~l~~v~~i~F~l~~~ 29 (317)
T COG0601 3 KYIIKRLLQAIPTLFIVSTLTFFLLRL 29 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455899999998888777777766543
No 165
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=22.25 E-value=1.1e+02 Score=31.22 Aligned_cols=10 Identities=30% Similarity=0.690 Sum_probs=3.9
Q ss_pred HHHHhhhhhh
Q psy12992 167 LFFFIGLEQR 176 (319)
Q Consensus 167 lfffigleqr 176 (319)
||+++-...|
T Consensus 129 ~~~~~e~~~~ 138 (697)
T PF09726_consen 129 LFVYVEASVR 138 (697)
T ss_pred HHHHHHHHHh
Confidence 3444433334
No 166
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=22.23 E-value=92 Score=24.71 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=5.3
Q ss_pred HHHHhhhhhhccc
Q psy12992 167 LFFFIGLEQRRKN 179 (319)
Q Consensus 167 lfffigleqrrkn 179 (319)
++++.....+++|
T Consensus 36 ~~~~~~~r~~~~~ 48 (146)
T PF14316_consen 36 LLLWRLWRRWRRN 48 (146)
T ss_pred HHHHHHHHHHHcc
Confidence 3333334444444
No 167
>PHA02967 hypothetical protein; Provisional
Probab=22.19 E-value=88 Score=26.84 Aligned_cols=34 Identities=24% Similarity=0.505 Sum_probs=16.6
Q ss_pred ecceEEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy12992 134 SHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQ 175 (319)
Q Consensus 134 shswvirvnflvfiflmrrvfflfiviflllillfffigleq 175 (319)
.||...+.+=..+|. +.=|++.++|+++|.+-|-
T Consensus 17 kHsllL~~~kY~~Iv--------~FEi~val~L~~~FFk~Ei 50 (128)
T PHA02967 17 KHEFLLSPNKYFYIL--------VFEVIVALIIINFFFKEEI 50 (128)
T ss_pred ceeEEcccccchhHH--------HHHHHHHHHHHHHHHHHHH
Confidence 477755554333332 2223344555666666553
No 168
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=22.19 E-value=96 Score=29.52 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=14.4
Q ss_pred HHHHHHHhhhhhhcccCCcc
Q psy12992 164 LILLFFFIGLEQRRKNDNKS 183 (319)
Q Consensus 164 lillfffigleqrrkndnks 183 (319)
++|++++|-|-.||||.-|.
T Consensus 273 vvliiLYiWlyrrRK~swkh 292 (295)
T TIGR01478 273 VVLIILYIWLYRRRKKSWKH 292 (295)
T ss_pred HHHHHHHHHHHHhhcccccc
Confidence 34455677889999997664
No 169
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=22.14 E-value=1e+02 Score=26.77 Aligned_cols=10 Identities=30% Similarity=0.989 Sum_probs=6.0
Q ss_pred eccccccccC
Q psy12992 90 NLLGRAWQCN 99 (319)
Q Consensus 90 nllgrawqcn 99 (319)
|++|..|...
T Consensus 121 ~~~g~~~~~~ 130 (511)
T PF09972_consen 121 NFIGSGWDVP 130 (511)
T ss_pred EEecCCCCCc
Confidence 3467777653
No 170
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=22.03 E-value=84 Score=24.47 Aligned_cols=15 Identities=53% Similarity=1.145 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHh
Q psy12992 157 FIVIFLLLILLFFFI 171 (319)
Q Consensus 157 fiviflllillfffi 171 (319)
|-+||..|.+.||||
T Consensus 18 FtLi~M~lti~~~~I 32 (64)
T PF03579_consen 18 FTLIFMMLTIGFFFI 32 (64)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555554
No 171
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=21.99 E-value=1.3e+02 Score=26.43 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12992 147 IFLMRRVFFLFIVIFLLLILLFFFIG 172 (319)
Q Consensus 147 iflmrrvfflfiviflllillfffig 172 (319)
-++.|.++..|+++++.++++|++.-
T Consensus 5 RYi~re~l~~~~~~l~~l~~i~~~~~ 30 (366)
T PRK15120 5 RYLVRETLKSQLAILFILLLIFFCQK 30 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666665555555554443
No 172
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=21.88 E-value=1.5e+02 Score=27.22 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12992 145 VFIFLMRRVFFLFIVIFLLLILLFFFI 171 (319)
Q Consensus 145 vfiflmrrvfflfiviflllillfffi 171 (319)
.+-+...-++++++++++++++++|+|
T Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~i 212 (553)
T PRK15048 186 DYRFAQWQLAVIALVVVLILLVAWYGI 212 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 173
>COG3162 Predicted membrane protein [Function unknown]
Probab=21.79 E-value=1.4e+02 Score=24.78 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12992 145 VFIFLMRRVFFLFIVIFLLLILL 167 (319)
Q Consensus 145 vfiflmrrvfflfiviflllill 167 (319)
.|+++|--.||++-+.|.|||-.
T Consensus 24 ~Fa~~ltl~flv~Y~~filLiaf 46 (102)
T COG3162 24 RFAVPLTLIFLVVYFGFILLIAF 46 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777776666666666666543
No 174
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=21.75 E-value=57 Score=26.20 Aligned_cols=15 Identities=53% Similarity=1.014 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy12992 156 LFIVIFLLLILLFFF 170 (319)
Q Consensus 156 lfiviflllillfff 170 (319)
+||||-.|+|.+|.|
T Consensus 6 ~Fvv~~~lmi~~f~f 20 (79)
T PF10808_consen 6 IFVVIAFLMIPLFCF 20 (79)
T ss_pred eehHHHHHHHHHHHH
Confidence 688888888888877
No 175
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=21.59 E-value=1.7e+02 Score=26.19 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhhhhhcccCC
Q psy12992 160 IFLLLILLFFFIGLEQRRKNDN 181 (319)
Q Consensus 160 iflllillfffigleqrrkndn 181 (319)
|+++++.+++++-..-|+++.+
T Consensus 44 I~~~V~~~~~~~~~k~R~~~~~ 65 (247)
T COG1622 44 IVLPVIVLLVYFAWKYRASNNA 65 (247)
T ss_pred HHHHHHHHHHHHHhhhhhcCCC
Confidence 4444444444444444544433
No 176
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=21.51 E-value=1.5e+02 Score=25.26 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q psy12992 145 VFIFLMRRVFFL 156 (319)
Q Consensus 145 vfiflmrrvffl 156 (319)
+.++.+|++...
T Consensus 159 vl~~~fRs~~~~ 170 (333)
T PF03176_consen 159 VLLLVFRSVRAA 170 (333)
T ss_pred hhhhHHHHHHHH
Confidence 334445554433
No 177
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=21.29 E-value=1.1e+02 Score=22.34 Aligned_cols=10 Identities=50% Similarity=0.966 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy12992 157 FIVIFLLLIL 166 (319)
Q Consensus 157 fiviflllil 166 (319)
||+.+|.-||
T Consensus 15 fl~v~l~PiL 24 (47)
T TIGR02972 15 FIIVVLFPIL 24 (47)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 178
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=21.09 E-value=1.5e+02 Score=26.31 Aligned_cols=20 Identities=30% Similarity=0.316 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy12992 142 NFLVFIFLMRRVFFLFIVIF 161 (319)
Q Consensus 142 nflvfiflmrrvfflfivif 161 (319)
|..-|++..+-+||+|+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (333)
T PTZ00260 3 NIWKVIFKHRMLIVLGLVVG 22 (333)
T ss_pred chhhhhhHHHHHHHHHHHHH
Confidence 33445555555666655443
No 179
>COG4853 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.88 E-value=69 Score=30.19 Aligned_cols=17 Identities=47% Similarity=0.819 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy12992 155 FLFIVIFLLLILLFFFI 171 (319)
Q Consensus 155 flfiviflllillfffi 171 (319)
-+|||+||||=+++..|
T Consensus 8 sIFIv~fLllnifL~~i 24 (264)
T COG4853 8 SIFIVVFLLLNIFLVSI 24 (264)
T ss_pred eeehhHHHHHHHHHHHH
Confidence 35677777664443333
No 180
>PRK15105 peptidoglycan synthase FtsI; Provisional
Probab=20.83 E-value=1.1e+02 Score=29.65 Aligned_cols=7 Identities=29% Similarity=0.292 Sum_probs=3.0
Q ss_pred HHHHHHH
Q psy12992 151 RRVFFLF 157 (319)
Q Consensus 151 rrvfflf 157 (319)
+|+.+++
T Consensus 21 ~R~~~~~ 27 (578)
T PRK15105 21 WRFALLC 27 (578)
T ss_pred HHHHHHH
Confidence 4444433
No 181
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=20.80 E-value=88 Score=29.41 Aligned_cols=14 Identities=21% Similarity=0.603 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHh
Q psy12992 158 IVIFLLLILLFFFI 171 (319)
Q Consensus 158 iviflllillfffi 171 (319)
++++|.+|+.-+|.
T Consensus 164 ~l~vla~ivY~~~~ 177 (318)
T PF06682_consen 164 FLLVLAFIVYSLFL 177 (318)
T ss_pred HHHHHHHHHHHHHh
Confidence 33334444444444
No 182
>PHA03083 poxvirus myristoylprotein; Provisional
Probab=20.71 E-value=69 Score=30.79 Aligned_cols=20 Identities=5% Similarity=0.255 Sum_probs=13.3
Q ss_pred ccCCcccccccccccCCCCC
Q psy12992 97 QCNSPKQKWMWHKRDHSSSS 116 (319)
Q Consensus 97 qcnspkqkwmwhkrdhssss 116 (319)
.|..--+||+--.-++--+-
T Consensus 243 ECt~~n~~fLLtdny~nl~~ 262 (334)
T PHA03083 243 ECANSNVNFLLTENYTNLGL 262 (334)
T ss_pred hhcCCCccEeeehhhhhhcC
Confidence 46666788887777665443
No 183
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=20.61 E-value=1e+02 Score=27.88 Aligned_cols=19 Identities=26% Similarity=0.597 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy12992 154 FFLFIVIFLLLILLFFFIG 172 (319)
Q Consensus 154 fflfiviflllillfffig 172 (319)
++|||++.+-|+|..+.+.
T Consensus 19 llL~il~iiNL~LTiwIl~ 37 (264)
T PF04790_consen 19 LLLFILAIINLALTIWILK 37 (264)
T ss_pred HHHHHHHHHHHHHHhhhhe
Confidence 4455555555555444443
No 184
>PTZ00370 STEVOR; Provisional
Probab=20.51 E-value=1e+02 Score=29.38 Aligned_cols=20 Identities=40% Similarity=0.649 Sum_probs=14.4
Q ss_pred HHHHHHHhhhhhhcccCCcc
Q psy12992 164 LILLFFFIGLEQRRKNDNKS 183 (319)
Q Consensus 164 lillfffigleqrrkndnks 183 (319)
++|++++|-|-.||||.-|.
T Consensus 269 vvliilYiwlyrrRK~swkh 288 (296)
T PTZ00370 269 VVLIILYIWLYRRRKNSWKH 288 (296)
T ss_pred HHHHHHHHHHHHhhcchhHH
Confidence 34455677889999997664
No 185
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=20.34 E-value=99 Score=28.44 Aligned_cols=17 Identities=29% Similarity=1.026 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy12992 156 LFIVIFLLLILLFFFIG 172 (319)
Q Consensus 156 lfiviflllillfffig 172 (319)
++++||.++.|+++|.|
T Consensus 125 fy~~~~V~iyLv~~ffg 141 (214)
T PF06837_consen 125 FYTLLFVSIYLVYFFFG 141 (214)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44566677777888877
No 186
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=20.32 E-value=1.2e+02 Score=29.36 Aligned_cols=6 Identities=50% Similarity=0.711 Sum_probs=2.7
Q ss_pred hccCee
Q psy12992 76 QREGKV 81 (319)
Q Consensus 76 qregkv 81 (319)
++||-+
T Consensus 184 ~~EGV~ 189 (386)
T PF05510_consen 184 QKEGVY 189 (386)
T ss_pred ccceEE
Confidence 445533
No 187
>COG5487 Small integral membrane protein [Function unknown]
Probab=20.28 E-value=1.1e+02 Score=23.14 Aligned_cols=20 Identities=45% Similarity=1.080 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q psy12992 151 RRVFFLFIVIFLLLILLFFFIGLE 174 (319)
Q Consensus 151 rrvfflfiviflllillfffigle 174 (319)
+-+||+|+|+| +.++|.|+.
T Consensus 32 kIlF~i~~vlf----~vsL~~g~~ 51 (54)
T COG5487 32 KILFFIFLVLF----LVSLFAGLK 51 (54)
T ss_pred HHHHHHHHHHH----HHHHHHHHh
Confidence 34555555544 345555653
No 188
>PF00822 PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; InterPro: IPR004031 Several vertebrate small integral membrane glycoproteins are evolutionary related [, , ], including eye lens specific membrane protein 20 (MP20 or MP19); epithelial membrane protein-1 (EMP-1), which is also known as tumor-associated membrane protein (TMP) or as squamous cell-specific protein Cl-20; epithelial membrane protein-2 (EMP-2), which is also known as XMP; epithelial membrane protein-3 (EMP-3), also known as YMP; and peripheral myelin protein 22 (PMP-22), which is expressed in many tissues but mainly by Schwann cells as a component of myelin of the peripheral nervous system (PNS). PMP-22 probably plays a role both in myelinization and in cell proliferation. Mutations affecting PMP-22 are associated with hereditary motor and sensory neuropathies such as Charcot-Marie-Tooth disease type 1A (CMT-1A) in human or the trembler phenotype in mice. The proteins of this family are about 160 to 173 amino acid residues in size, and contain four transmembrane segments. PMP-22, EMP-1, -2 and -3 are highly similar, while MP20 is more distantly related. This family also includes the claudins, which are components of tight junctions.; GO: 0016020 membrane
Probab=20.27 E-value=1.5e+02 Score=22.42 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccC
Q psy12992 149 LMRRVFFLFIVIFLLLILLFFFIGLEQRRKND 180 (319)
Q Consensus 149 lmrrvfflfiviflllillfffigleqrrknd 180 (319)
-.-|.+++.-+++.++-++.+++|++..++.+
T Consensus 71 ~a~r~l~i~s~il~~l~~~l~~~g~~~~~~~~ 102 (166)
T PF00822_consen 71 QAARALMILSIILGFLGLILALFGLCCTKRGP 102 (166)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccccccCC
Confidence 33466666666666677777888888755443
No 189
>TIGR03747 conj_TIGR03747 integrating conjugative element membrane protein, PFL_4697 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.25 E-value=2e+02 Score=25.83 Aligned_cols=43 Identities=28% Similarity=0.522 Sum_probs=28.9
Q ss_pred ceEEeehHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhcc
Q psy12992 136 SWVIRVNFLVFIFLMRRVF-FLFIVIFLLLILLFFFIGLEQRRK 178 (319)
Q Consensus 136 swvirvnflvfiflmrrvf-flfiviflllillfffigleqrrk 178 (319)
.+..-..+.+++|+.|-.. ++-+.+|++.++.-++=||-+|.-
T Consensus 124 ~yl~a~~~~~~~f~iRL~IL~~~lPlfll~~~~glvDGLvrRdi 167 (233)
T TIGR03747 124 DYLLAAVYVTLVFLVRLVILVLAIPLFLLAAFVGLVDGLVRRDL 167 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667778777543 344567777777778888888854
No 190
>PTZ00116 signal peptidase; Provisional
Probab=20.23 E-value=69 Score=28.39 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=12.2
Q ss_pred cceEEeehHHHHHHH
Q psy12992 135 HSWVIRVNFLVFIFL 149 (319)
Q Consensus 135 hswvirvnflvfifl 149 (319)
|||..|.|-+++..+
T Consensus 2 hS~~~R~Nal~~f~~ 16 (185)
T PTZ00116 2 DNVLNRLNVLSYSMA 16 (185)
T ss_pred ccHHHHHHHHHHHHH
Confidence 899999999886444
No 191
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=20.14 E-value=34 Score=26.39 Aligned_cols=18 Identities=33% Similarity=0.776 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy12992 154 FFLFIVIFLLLILLFFFI 171 (319)
Q Consensus 154 fflfiviflllillfffi 171 (319)
++++.+++++++++++++
T Consensus 18 ll~~~~~~l~~~l~~~~~ 35 (160)
T PF04612_consen 18 LLLVLGVVLLLALLYLLL 35 (160)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 192
>PRK10833 putative assembly protein; Provisional
Probab=20.14 E-value=75 Score=30.25 Aligned_cols=16 Identities=25% Similarity=0.737 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12992 150 MRRVFFLFIVIFLLLI 165 (319)
Q Consensus 150 mrrvfflfivifllli 165 (319)
|+|.++.++++++|++
T Consensus 1 mkrll~~l~~l~~l~v 16 (617)
T PRK10833 1 MRRFLTTLMILLVVLV 16 (617)
T ss_pred CcchHHHHHHHHHHHH
Confidence 4565555555444443
No 193
>PF14992 TMCO5: TMCO5 family
Probab=20.04 E-value=1.8e+02 Score=27.31 Aligned_cols=27 Identities=33% Similarity=0.656 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q psy12992 145 VFIFLMRRVFFLFIVIFL-LLILLFFFI 171 (319)
Q Consensus 145 vfiflmrrvfflfivifl-llillfffi 171 (319)
.|++-+-|.+|..|++|. ||..+||||
T Consensus 212 ~~wkr~lr~l~f~vL~f~~LL~y~~f~~ 239 (280)
T PF14992_consen 212 TFWKRALRLLFFMVLFFTRLLGYLLFYI 239 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444333333332 333344443
No 194
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=20.03 E-value=1.4e+02 Score=22.93 Aligned_cols=9 Identities=11% Similarity=0.117 Sum_probs=3.7
Q ss_pred HHhhhhhhc
Q psy12992 169 FFIGLEQRR 177 (319)
Q Consensus 169 ffigleqrr 177 (319)
.++++|-.+
T Consensus 66 ~~~~~e~~~ 74 (103)
T PF06422_consen 66 TLLATEFIK 74 (103)
T ss_pred HHHHHHHhc
Confidence 334444433
No 195
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=20.02 E-value=1.6e+02 Score=24.95 Aligned_cols=28 Identities=36% Similarity=0.673 Sum_probs=10.9
Q ss_pred ehHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy12992 141 VNFLVFIFLMRRVFFLFIV-IFLLLILLF 168 (319)
Q Consensus 141 vnflvfiflmrrvfflfiv-iflllillf 168 (319)
|-.+.=+||+--..|+.|. +++||.|||
T Consensus 8 VKlfFEwFLF~~AIFiAItIlYILLalL~ 36 (117)
T PF07234_consen 8 VKLFFEWFLFFGAIFIAITILYILLALLF 36 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444333333333 334444443
Done!