Query psy12992
Match_columns 319
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Fri Aug 16 16:22:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o0r_C Nitric oxide reductase 65.4 6.4 0.00022 28.3 3.7 17 151-167 10-26 (146)
2 3cx5_D Cytochrome C1, heme pro 39.3 35 0.0012 29.8 4.7 24 141-164 191-218 (248)
3 3tlw_A GLR4197 protein, GLIC; 35.0 26 0.00089 28.9 3.1 9 164-172 312-320 (321)
4 2yiu_B Cytochrome C1, heme pro 34.3 46 0.0016 29.3 4.7 24 141-164 213-240 (263)
5 1pp9_D Cytochrome C-1, cytochr 34.2 47 0.0016 28.8 4.7 25 141-165 187-215 (241)
6 1zrt_D Cytochrome C1; cytochro 34.0 47 0.0016 29.1 4.7 24 141-164 210-237 (258)
7 1fjk_A Cardiac phospholamban; 33.9 30 0.001 24.9 2.9 16 154-169 34-49 (52)
8 2qjy_B Cytochrome C1; cytochro 32.8 50 0.0017 29.2 4.7 24 141-164 212-239 (269)
9 2rdd_B UPF0092 membrane protei 28.4 22 0.00075 22.6 1.2 11 168-178 17-27 (37)
10 1b9u_A Protein (ATP synthase); 25.5 31 0.0011 20.8 1.5 11 142-152 13-23 (34)
11 1m56_D Cytochrome C oxidase; m 24.0 1.1E+02 0.0037 21.2 4.2 24 145-171 27-50 (51)
12 3spc_A Inward-rectifier K+ cha 23.2 61 0.0021 28.8 3.5 14 154-167 48-61 (343)
13 1p7b_A Integral membrane chann 22.7 60 0.0021 28.4 3.4 21 151-171 61-81 (333)
14 3lb6_C IL-13, interleukin-13 r 22.4 18 0.00063 30.1 0.0 6 84-89 255-260 (380)
15 3vmt_A Monofunctional glycosyl 21.8 40 0.0014 29.6 2.0 49 117-173 12-60 (263)
16 3hd7_A Vesicle-associated memb 20.7 1.2E+02 0.0039 22.1 4.0 21 150-170 65-85 (91)
17 1xl4_A Inward rectifier potass 20.0 86 0.0029 26.8 3.7 9 156-164 52-60 (301)
No 1
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=65.45 E-value=6.4 Score=28.28 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12992 151 RRVFFLFIVIFLLLILL 167 (319)
Q Consensus 151 rrvfflfiviflllill 167 (319)
.+.+|+++++|++++++
T Consensus 10 ~~~~~~~~~l~~~l~~~ 26 (146)
T 3o0r_C 10 ARNIYFGGSVFFILLFL 26 (146)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455444444444433
No 2
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=39.31 E-value=35 Score=29.77 Aligned_cols=24 Identities=29% Similarity=0.227 Sum_probs=14.7
Q ss_pred ehHHHHH----HHHHHHHHHHHHHHHHH
Q psy12992 141 VNFLVFI----FLMRRVFFLFIVIFLLL 164 (319)
Q Consensus 141 vnflvfi----flmrrvfflfiviflll 164 (319)
||||.++ ..-|...-+.+++||++
T Consensus 191 v~FL~w~aEP~~~~Rk~~G~~vl~fL~i 218 (248)
T 3cx5_D 191 TTFLNWCAEPEHDERKRLGLKTVIILSS 218 (248)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 6777775 34566666666666543
No 3
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=35.02 E-value=26 Score=28.86 Aligned_cols=9 Identities=56% Similarity=1.228 Sum_probs=3.1
Q ss_pred HHHHHHHhh
Q psy12992 164 LILLFFFIG 172 (319)
Q Consensus 164 lillfffig 172 (319)
+|+.|+++|
T Consensus 312 ~i~~~~~~~ 320 (321)
T 3tlw_A 312 IILAFLFFG 320 (321)
T ss_dssp HHHHHHHC-
T ss_pred HHHHhhhcc
Confidence 333344333
No 4
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=34.34 E-value=46 Score=29.34 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=13.6
Q ss_pred ehHHHHH----HHHHHHHHHHHHHHHHH
Q psy12992 141 VNFLVFI----FLMRRVFFLFIVIFLLL 164 (319)
Q Consensus 141 vnflvfi----flmrrvfflfiviflll 164 (319)
||||.++ ..-|...-+.++|||++
T Consensus 213 vaFL~waaEP~~~~Rk~lG~~vl~fL~i 240 (263)
T 2yiu_B 213 AAFLMWTAEPKMMDRKQVGFVSVIFLIV 240 (263)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 5777775 24455555555555543
No 5
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=34.21 E-value=47 Score=28.76 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=14.7
Q ss_pred ehHHHHH----HHHHHHHHHHHHHHHHHH
Q psy12992 141 VNFLVFI----FLMRRVFFLFIVIFLLLI 165 (319)
Q Consensus 141 vnflvfi----flmrrvfflfivifllli 165 (319)
||||.++ ..-|...-+.+++||+++
T Consensus 187 v~FL~w~aEP~~~~Rk~~G~~vl~fL~il 215 (241)
T 1pp9_D 187 CTFLRWAAEPEHDHRKRMGLKMLLMMGLL 215 (241)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 5777775 345666666666665443
No 6
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=34.01 E-value=47 Score=29.15 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=14.2
Q ss_pred ehHHHHH----HHHHHHHHHHHHHHHHH
Q psy12992 141 VNFLVFI----FLMRRVFFLFIVIFLLL 164 (319)
Q Consensus 141 vnflvfi----flmrrvfflfiviflll 164 (319)
||||.+. ..-|...-+.++|||++
T Consensus 210 v~FL~waaEP~~~~Rk~~G~~vl~fL~i 237 (258)
T 1zrt_D 210 SAFLMWAAEPKLVARKQMGLVAMVMLGL 237 (258)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 6788775 34455555555555543
No 7
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=33.92 E-value=30 Score=24.89 Aligned_cols=16 Identities=50% Similarity=0.824 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12992 154 FFLFIVIFLLLILLFF 169 (319)
Q Consensus 154 fflfiviflllillff 169 (319)
-|..|+|+||||.+..
T Consensus 34 nfclilicllli~iiv 49 (52)
T 1fjk_A 34 NFCLILIFLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566777777775543
No 8
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=32.76 E-value=50 Score=29.23 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=14.2
Q ss_pred ehHHHHH----HHHHHHHHHHHHHHHHH
Q psy12992 141 VNFLVFI----FLMRRVFFLFIVIFLLL 164 (319)
Q Consensus 141 vnflvfi----flmrrvfflfiviflll 164 (319)
||||.+. ..-|...-+.++|||++
T Consensus 212 vaFL~waaEP~~~~Rk~lG~~Vl~fL~i 239 (269)
T 2qjy_B 212 SAFLMWAAEPKLMARKQAGFTAVMFLTV 239 (269)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 6788775 34455555555555543
No 9
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=28.37 E-value=22 Score=22.58 Aligned_cols=11 Identities=27% Similarity=0.612 Sum_probs=4.9
Q ss_pred HHHhhhhhhcc
Q psy12992 168 FFFIGLEQRRK 178 (319)
Q Consensus 168 fffigleqrrk 178 (319)
+||+--.|+++
T Consensus 17 YFl~iRPQ~Kr 27 (37)
T 2rdd_B 17 YFMILRPQQKR 27 (37)
T ss_dssp HHHTHHHHHHH
T ss_pred HHHHhhhHHHH
Confidence 34444445443
No 10
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=25.54 E-value=31 Score=20.81 Aligned_cols=11 Identities=18% Similarity=0.742 Sum_probs=4.4
Q ss_pred hHHHHHHHHHH
Q psy12992 142 NFLVFIFLMRR 152 (319)
Q Consensus 142 nflvfiflmrr 152 (319)
||++++++.++
T Consensus 13 ~Flil~~~l~k 23 (34)
T 1b9u_A 13 AFVLFVLFCMK 23 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 11
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=24.04 E-value=1.1e+02 Score=21.19 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12992 145 VFIFLMRRVFFLFIVIFLLLILLFFFI 171 (319)
Q Consensus 145 vfiflmrrvfflfiviflllillfffi 171 (319)
-||-+..+. -+++..+|+++.+|+
T Consensus 27 gFi~~~k~g---t~~~~~~ll~laif~ 50 (51)
T 1m56_D 27 GFVRMVTWA---AVVIVAALIFLALAN 50 (51)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHc
Confidence 454444432 233333444444443
No 12
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=23.16 E-value=61 Score=28.82 Aligned_cols=14 Identities=43% Similarity=0.740 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q psy12992 154 FFLFIVIFLLLILL 167 (319)
Q Consensus 154 fflfiviflllill 167 (319)
+++|++.|+++.++
T Consensus 48 ll~f~~~y~~swl~ 61 (343)
T 3spc_A 48 LLLFSLAFLVSWLL 61 (343)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 13
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=22.74 E-value=60 Score=28.39 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy12992 151 RRVFFLFIVIFLLLILLFFFI 171 (319)
Q Consensus 151 rrvfflfiviflllillfffi 171 (319)
+.++++|+++|++++++|.++
T Consensus 61 ~~ll~~~~~~~l~~~l~fall 81 (333)
T 1p7b_A 61 PVFFASLAALFVVNNTLFALL 81 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666665555444
No 14
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*
Probab=22.40 E-value=18 Score=30.08 Aligned_cols=6 Identities=33% Similarity=1.398 Sum_probs=3.1
Q ss_pred EEEeee
Q psy12992 84 KVRWEV 89 (319)
Q Consensus 84 kvrwev 89 (319)
.|.|+.
T Consensus 255 ~l~W~~ 260 (380)
T 3lb6_C 255 KLKWSI 260 (380)
T ss_dssp CEEEEC
T ss_pred EEEECC
Confidence 355654
No 15
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=21.77 E-value=40 Score=29.63 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=12.9
Q ss_pred CceEEEEEeeeeEEEEeecceEEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12992 117 SSLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGL 173 (319)
Q Consensus 117 sslvlsivhtdirvvikshswvirvnflvfiflmrrvfflfiviflllillfffigl 173 (319)
|.||----|...-+--.--.|-.|+- +.++++|+++|++++.+++++..
T Consensus 12 ~~~~~~~~~~~~~~~~~kk~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~ 60 (263)
T 3vmt_A 12 SGLVPRGSHMQPVGKPPKKKKSKRIL--------LKILLTILIIIALFIGIMYFLST 60 (263)
T ss_dssp -----------------------CCT--------THHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCcccCCCcccccCCchhhhhHHHHH--------HHHHHHHHHHHHHHHHHHHHhhc
Confidence 45655444444433333445555542 33344555555555555555543
No 16
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=20.72 E-value=1.2e+02 Score=22.09 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12992 150 MRRVFFLFIVIFLLLILLFFF 170 (319)
Q Consensus 150 mrrvfflfiviflllillfff 170 (319)
++.+=+.+|+++++++++|++
T Consensus 65 wkn~K~~iii~~iv~~il~ii 85 (91)
T 3hd7_A 65 WKNLKMMIILGVICAIILIII 85 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555444444433
No 17
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=20.04 E-value=86 Score=26.77 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy12992 156 LFIVIFLLL 164 (319)
Q Consensus 156 lfiviflll 164 (319)
+|+++|+++
T Consensus 52 ~~~~~~~~~ 60 (301)
T 1xl4_A 52 LITGLYLVT 60 (301)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
Done!