RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12992
(319 letters)
>gnl|CDD|116627 pfam08017, Fibrinogen_BP, Fibrinogen binding protein. Proteins in
this family bind to fibrinogen. Members of this family
includes the fibrinogen receptor, FbsA, which mediates
platelet aggregation.
Length = 393
Score = 41.8 bits (97), Expect = 3e-04
Identities = 43/140 (30%), Positives = 69/140 (49%)
Query: 175 QRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMG 234
++R +N+SQ + R +NKSQ + R +NKSQ + R ++N+SQ
Sbjct: 162 RQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGN 221
Query: 235 SGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNK 294
+ R +NKSQ + R +NKSQ + R ++N+SQ + R +NK
Sbjct: 222 VLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDVENK 281
Query: 295 SQMGSGLEQSRKSDNKSQMG 314
SQ + R ++NKSQ+G
Sbjct: 282 SQGNVLERRQRDAENKSQVG 301
Score = 41.4 bits (96), Expect = 4e-04
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Query: 173 LEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQ 232
LE+R+++ G+ LE+ +R G+ LE+ +R G+ LE+ +R
Sbjct: 95 LERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDAENKS 154
Query: 233 MGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRR-S 291
G+ LE+ +R G+ LE+ +R G+ LE+ +R G+ LE+ +R +
Sbjct: 155 QGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDA 214
Query: 292 DNKSQMGSGLEQSRKSDNKSQ 312
+N+SQ + R +NKSQ
Sbjct: 215 ENRSQGNVLERRQRDVENKSQ 235
Score = 40.6 bits (94), Expect = 7e-04
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 173 LEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQ 232
LE+R+++ G+ LE+ +R G+ LE+ +R G+ LE+ +R
Sbjct: 127 LERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKS 186
Query: 233 MGSGLEQSRRSDNKSQMGSGLEQSRR-SDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G+ LE+ +R G+ LE+ +R ++N+SQ + R +NKSQ + R
Sbjct: 187 QGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDV 246
Query: 292 DNKSQMGSGLEQSRKSDNKSQ 312
+NKSQ + R ++N+SQ
Sbjct: 247 ENKSQGNVLERRQRDAENRSQ 267
Score = 40.6 bits (94), Expect = 7e-04
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Query: 173 LEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQ 232
LE+R+++ G+ LE+ +R G+ LE+ +R G+ LE+ +R
Sbjct: 79 LERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRS 138
Query: 233 MGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRR-S 291
G+ LE+ +R G+ LE+ +R G+ LE+ +R G+ LE+ +R
Sbjct: 139 QGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDV 198
Query: 292 DNKSQMGSGLEQSRKSDNKSQ 312
+NKSQ + R ++N+SQ
Sbjct: 199 ENKSQGNVLERRQRDAENRSQ 219
Score = 40.2 bits (93), Expect = 9e-04
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 173 LEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQ 232
LE+R+++ G+ LE+ +R G+ LE+ +R G+ LE+ +R
Sbjct: 143 LERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKS 202
Query: 233 MGSGLEQSRR-SDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRS 291
G+ LE+ +R ++N+SQ + R +NKSQ + R +NKSQ + R +
Sbjct: 203 QGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDA 262
Query: 292 DNKSQMGSGLEQSRKSDNKSQ 312
+N+SQ + R +NKSQ
Sbjct: 263 ENRSQGNVLERRQRDVENKSQ 283
Score = 40.2 bits (93), Expect = 0.001
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Query: 173 LEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQ 232
LE+R+++ G+ LE+ +R G+ LE+ +R G+ LE+ +R
Sbjct: 47 LERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDVENKS 106
Query: 233 MGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRR-S 291
G+ LE+ +R G+ LE+ +R G+ LE+ +R G+ LE+ +R +
Sbjct: 107 QGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDA 166
Query: 292 DNKSQMGSGLEQSRKSDNKSQ 312
+N+SQ + R +NKSQ
Sbjct: 167 ENRSQGNVLERRQRDVENKSQ 187
Score = 40.2 bits (93), Expect = 0.001
Identities = 39/141 (27%), Positives = 71/141 (50%), Gaps = 1/141 (0%)
Query: 173 LEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQ 232
LE+R+++ G+ LE+ +R G+ LE+ +R G+ LE+ +R
Sbjct: 31 LERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRS 90
Query: 233 MGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRR-SDNKSQMGSGLEQSRRS 291
G+ LE+ +R G+ LE+ +R G+ LE+ +R ++N+SQ + R +
Sbjct: 91 QGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDA 150
Query: 292 DNKSQMGSGLEQSRKSDNKSQ 312
+NKSQ + R ++N+SQ
Sbjct: 151 ENKSQGNVLERRQRDAENRSQ 171
Score = 39.8 bits (92), Expect = 0.001
Identities = 41/139 (29%), Positives = 68/139 (48%)
Query: 174 EQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQM 233
++R +N+SQ + R ++N+SQ + R +NKSQ + R +NKSQ
Sbjct: 65 RRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQG 124
Query: 234 GSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDN 293
+ R ++N+SQ + R ++NKSQ + R ++N+SQ + R +N
Sbjct: 125 NVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDVEN 184
Query: 294 KSQMGSGLEQSRKSDNKSQ 312
KSQ + R +NKSQ
Sbjct: 185 KSQGNVLERRQRDVENKSQ 203
Score = 39.8 bits (92), Expect = 0.001
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Query: 173 LEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQ 232
LE+R+++ G+ LE+ +R G+ LE+ +R G+ LE+ +R
Sbjct: 111 LERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRS 170
Query: 233 MGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRR-SDNKSQMGSGLEQSRRS 291
G+ LE+ +R G+ LE+ +R G+ LE+ +R ++N+SQ + R
Sbjct: 171 QGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDV 230
Query: 292 DNKSQMGSGLEQSRKSDNKSQ 312
+NKSQ + R +NKSQ
Sbjct: 231 ENKSQGNVLERRQRDVENKSQ 251
Score = 37.5 bits (86), Expect = 0.007
Identities = 38/132 (28%), Positives = 66/132 (50%)
Query: 181 NKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQS 240
N+SQ + R ++N+SQ + R ++N+SQ + R ++N+SQ +
Sbjct: 24 NQSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQ 83
Query: 241 RRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSG 300
R ++N+SQ + R +NKSQ + R +NKSQ + R ++N+SQ
Sbjct: 84 RDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVL 143
Query: 301 LEQSRKSDNKSQ 312
+ R ++NKSQ
Sbjct: 144 ERRQRDAENKSQ 155
Score = 37.1 bits (85), Expect = 0.009
Identities = 68/292 (23%), Positives = 121/292 (41%), Gaps = 34/292 (11%)
Query: 7 GSGLEQRRKNNNKSQMGSGLEQSRKNNNKSQMGSGLEQSRRSDNKSQMGSGLEQRRKNNN 66
G+ LE+R+++ G+ LE+ +++ G+ LE+ +R G+ LE+R+++
Sbjct: 44 GNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDVE 103
Query: 67 KSQMGSDLEQREGKVITKVRWEVNLLGRAWQCNSPKQKWMWHKRDHSSSSSSLVLSIVHT 126
G+ LE+R+ V K + V L R + Q + +R + + S +
Sbjct: 104 NKSQGNVLERRQRDVENKSQGNV-LERRQRDAENRSQGNVLERRQRDAENKSQGNVLERR 162
Query: 127 DIRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKNDNKSQMG 186
+S V+ ++R +NKSQ
Sbjct: 163 QRDAENRSQGNVLE---------------------------------RRQRDVENKSQGN 189
Query: 187 SGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNK 246
+ R +NKSQ + R ++N+SQ + R +NKSQ + R +NK
Sbjct: 190 VLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENK 249
Query: 247 SQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMG 298
SQ + R ++N+SQ + R +NKSQ + R ++NKSQ+G
Sbjct: 250 SQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDAENKSQVG 301
Score = 32.9 bits (74), Expect = 0.19
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Query: 185 MGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSD 244
+GS + S G+ LE+ +R G+ LE+ +R G+ LE+ +R
Sbjct: 11 LGSSPVSAMDSVGNQSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDA 70
Query: 245 NKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRR-SDNKSQMGSGLEQ 303
G+ LE+ +R G+ LE+ +R G+ LE+ +R +NKSQ +
Sbjct: 71 ENRSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERR 130
Query: 304 SRKSDNKSQ 312
R ++N+SQ
Sbjct: 131 QRDAENRSQ 139
Score = 32.5 bits (73), Expect = 0.30
Identities = 66/281 (23%), Positives = 118/281 (41%), Gaps = 35/281 (12%)
Query: 2 NKSQMGSGLEQRRKNNNKSQMGSGLEQSRKNNNKSQMGSGLEQSRRSDNKSQMGSGLEQR 61
N+SQ G+ LE+R+++ G+ LE+ +++ G+ LE+ +R G+ LE+R
Sbjct: 56 NRSQ-GNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERR 114
Query: 62 RKNNNKSQMGSDLEQREGKVITKVRWEVNLLGRAWQCNSPKQKWMWHKRDHSSSSSSLVL 121
+++ G+ LE+R+ + + V L R + Q + +R + + S
Sbjct: 115 QRDVENKSQGNVLERRQRDAENRSQGNV-LERRQRDAENKSQGNVLERRQRDAENRSQGN 173
Query: 122 SIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKNDN 181
+ V KS V+ ++R +N
Sbjct: 174 VLERRQRDVENKSQGNVLE---------------------------------RRQRDVEN 200
Query: 182 KSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSR 241
KSQ + R ++N+SQ + R +NKSQ + R +NKSQ + R
Sbjct: 201 KSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQR 260
Query: 242 RSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMG 282
++N+SQ + R +NKSQ + R ++NKSQ+G
Sbjct: 261 DAENRSQGNVLERRQRDVENKSQGNVLERRQRDAENKSQVG 301
>gnl|CDD|165227 PHA02909, PHA02909, hypothetical protein; Provisional.
Length = 72
Score = 34.5 bits (79), Expect = 0.007
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 7/58 (12%)
Query: 119 LVLSIVHTD-IRVVIKSHSWVIRVNFLVFIFLMRRVF------FLFIVIFLLLILLFF 169
L+LS+ + + +V +++ I V+F++F+ + +F +++I I + LILLFF
Sbjct: 13 LMLSVDYGNGKKVYYTENTFCIMVSFILFVIIFLSMFTILACSYVYIAIIISLILLFF 70
>gnl|CDD|192859 pfam11872, DUF3392, Protein of unknown function (DUF3392). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are about 110 amino acids in length.
Length = 106
Score = 34.5 bits (80), Expect = 0.013
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 22/69 (31%)
Query: 128 IRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFL------------------LLILLFF 169
+R ++ +++R L FI L+ + ++++L +++ +F
Sbjct: 41 LRRLLSGRHFLLRT--LAFI-LVCAFGYGLLIVWLSPWLARGLASIPNYWLAPVVVAVFI 97
Query: 170 FIG-LEQRR 177
IG L QR+
Sbjct: 98 LIGVLAQRK 106
>gnl|CDD|223674 COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 317
Score = 36.3 bits (85), Expect = 0.014
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 146 FIFLMRRVFFLFIVIFLLLILLFFFIGL 173
++++R+ +F++ L FF + L
Sbjct: 2 LKYIIKRLLQAIPTLFIVSTLTFFLLRL 29
>gnl|CDD|216682 pfam01757, Acyl_transf_3, Acyltransferase family. This family
includes a range of acyltransferase enzymes. This domain
is found in many as yet uncharacterized C. elegans
proteins and it is approximately 300 amino acids long.
Length = 326
Score = 36.0 bits (83), Expect = 0.018
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 106 MWHKRDHSSSSSSLVLSIVHTDIRVVIKSHSWVIRVNFLVFIF------LMRRVFFLFIV 159
S L+L ++ H W + F+ ++ L+R++ L ++
Sbjct: 95 GLLVGGLSVYGLLLLLLLLGLLFGGGPNGHLWFLPALFVFYLLLPLLLRLLRKLKKLLLL 154
Query: 160 IFLLLILLFFFIGL 173
+ L L+LL + +
Sbjct: 155 LLLALLLLLSLLYI 168
>gnl|CDD|204928 pfam12459, DUF3687, D-Ala-teichoic acid biosynthesis protein. This
family of proteins is found in bacteria. Proteins in
this family are approximately 50 amino acids in length.
There are two completely conserved residues (L and Y)
that may be functionally important.
Length = 42
Score = 32.5 bits (75), Expect = 0.018
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 145 VFIFLMRRVFFLFIVIFLLLILLFFFIGLEQ 175
F+++ +F+ +I L LI L+ + G+ Q
Sbjct: 7 AVKFILKTLFYF--LILLALIYLYGYSGIGQ 35
>gnl|CDD|238536 cd01116, P_permease, Permease P (pink-eyed dilution). Mutations in
the human melanosomal P gene were responsible for
classic phenotype of oculocutaneous albinism type 2
(OCA2). Although the precise function of the P protein
is unknown, it was predicted to regulate the
intraorganelle pH, together with the ATP-driven proton
pump. It shows significant sequence similarity to the
Na+/H+ antiporter NhaD from Vibrio parahaemolyticus.
Both proteins belong to ArsB/NhaD superfamily of
permeases that translocate sodium, arsenate, sulfate,
and organic anions across biological membranes in all
three kingdoms of life. A typical ArsB/NhaD permease
contains 8-13 transmembrane domains.
Length = 413
Score = 35.7 bits (83), Expect = 0.024
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 140 RVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKNDNKSQMGSGLEQSRRSDNKS 199
+ F F+ M L +V+ +L+ + L+ R ++ LE +K
Sbjct: 159 GLTFNDFLLHMLPSVVLALVVTFILLYFLYRNILKAREEDVLALA---ELEPKYPIKDKV 215
>gnl|CDD|172260 PRK13718, PRK13718, conjugal transfer protein TrbE; Provisional.
Length = 84
Score = 33.2 bits (76), Expect = 0.026
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 150 MRRVFFLFIVIFLLLILLFFFIGLEQRRKNDNKS 183
+ VF + LL IL FFF L + +K+D +
Sbjct: 44 LAAVFVILYSGVLLFILYFFFSALTKLQKHDERK 77
>gnl|CDD|233631 TIGR01906, integ_TIGR01906, integral membrane protein TIGR01906.
This model represents a family of highly hydrophobic,
uncharacterized predicted integral membrane proteins
found almost entirely in low-GC Gram-positive bacteria,
although a member is also found in the early-branching
bacterium Aquifex aeolicus.
Length = 207
Score = 35.0 bits (81), Expect = 0.029
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 137 WVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQ 175
W+ L + L+ + F F+++ L+I + + E+
Sbjct: 109 WIALTFKLRSLSLLIKSFI-FLLLLPLIIGILILLNFEK 146
>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family.
Presenilin 1 and presenilin 2 are polytopic membrane
proteins, whose genes are mutated in some individuals
with Alzheimer's disease. Distant homologues, present in
eukaryotes and archaea, also contain conserved aspartic
acid residues which are predicted to contribute to
catalysis. At least one member of this family has been
shown to possess signal peptide peptidase activity.
Length = 249
Score = 34.9 bits (81), Expect = 0.036
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 4/42 (9%)
Query: 143 FLVFIFLMRRVFFLF----IVIFLLLILLFFFIGLEQRRKND 180
LV ++ + + +L L LE R +
Sbjct: 20 VLVLLYKFFKYLVIVLVIYFSSLGVLFLYSLLYPLEVFRVDY 61
>gnl|CDD|227829 COG5542, COG5542, Predicted integral membrane protein [Function
unknown].
Length = 420
Score = 35.1 bits (81), Expect = 0.042
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 132 IKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFF 169
+ + ++R L+ I M + V F L +
Sbjct: 328 LAALIVLLRP--LILIVCMHERYLNRAVSFSPLAYWYL 363
>gnl|CDD|217315 pfam03006, HlyIII, Haemolysin-III related. Members of this family
are integral membrane proteins. This family includes a
protein with hemolytic activity from Bacillus cereus. It
has been proposed that YOL002c encodes a Saccharomyces
cerevisiae protein that plays a key role in metabolic
pathways that regulate lipid and phosphate metabolism.
In eukaryotes, members are seven-transmembrane pass
molecules found to encode functional receptors with a
broad range of apparent ligand specificities, including
progestin and adipoQ receptors, and hence have been
named PAQR proteins. The mammalian members include
progesterone binding proteins. Unlike the case with GPCR
receptor proteins, the evolutionary ancestry of the
members of this family can be traced back to the
Archaea.
Length = 207
Score = 34.5 bits (80), Expect = 0.045
Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 96 WQCNSP-KQKWMWHKRDHSS-------SSSSLVLSIVHTDIRVVIKSHSWVIRVNFLVFI 147
+ C+S + K++ K DHS S + +L + + ++ W + + ++
Sbjct: 63 FSCHSEGRAKYVLRKLDHSGIYLLIAGSYTPFLLYALCGPLGWILLIFIWGLALLGILLK 122
Query: 148 FLMRRVF-----FLFIVIFLLLILLFFFIGL 173
+ F L++++ L I+ + L
Sbjct: 123 LFWLKRFRWLRTVLYLLMGWLGIIPIKHLIL 153
>gnl|CDD|148697 pfam07242, DUF1430, Protein of unknown function (DUF1430). This
family represents the C-terminus (approximately 120
residues) of a number of hypothetical bacterial proteins
of unknown function. These are possibly membrane
proteins involved in immunity.
Length = 100
Score = 32.2 bits (74), Expect = 0.073
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 132 IKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFI 171
K H + + +V++F + F L +LL +L +
Sbjct: 37 FKRHKTYLIIQLIVWVFGLILAFILTKSNIILLFVLVLLL 76
>gnl|CDD|218858 pfam06024, DUF912, Nucleopolyhedrovirus protein of unknown function
(DUF912). This family consists of several
Nucleopolyhedrovirus proteins of unknown function.
Length = 101
Score = 32.3 bits (74), Expect = 0.078
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 146 FIFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKN--DNKSQM 185
I L+ F + +LL +++F+ L +RRK +N S +
Sbjct: 62 NIILI--GLLAFFCVLVLLYAIYYFVILRERRKYSTNNPSYV 101
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 33.8 bits (78), Expect = 0.099
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 141 VNFLVFIFLMRRVFFLFIVIFLLLILLFFFI 171
+ L+ +FL+R + L + FLL + +
Sbjct: 165 LLALLLLFLLRLLLLLALAFFLLSFGYYGLL 195
Score = 31.9 bits (73), Expect = 0.43
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 143 FLVFIFLMRRVFFLFIVIFLLLILLFFFI 171
L R +F + ++ LLL LL F+
Sbjct: 145 LLAESLGWRWLFLILAILGLLLALLLLFL 173
>gnl|CDD|177125 MTH00050, ATP6, ATP synthase F0 subunit 6; Validated.
Length = 170
Score = 32.9 bits (76), Expect = 0.10
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 115 SSSSLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRV-----FFLFIVIFLLLILLFF 169
+ S + S+++ I S+ + + + ++F+FL+ R+ FLF+V FL +++
Sbjct: 4 NDFSSLFSLIYKLILGGSVSYYYSVVLFIVLFLFLLYRLPYIYSPFLFVV-FLFVVVFPL 62
Query: 170 FIGL 173
FI L
Sbjct: 63 FISL 66
>gnl|CDD|224970 COG2059, ChrA, Chromate transport protein ChrA [Inorganic ion
transport and metabolism].
Length = 195
Score = 33.0 bits (76), Expect = 0.11
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 135 HSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKNDNK 182
+ V ++ I L+ F +VI L LL + +GL+ + K K
Sbjct: 142 GWVGLAVLTVIAILLLPTKFVHPLVIILAG-LLGWLLGLKPKSKRIRK 188
>gnl|CDD|232943 TIGR00367, TIGR00367, K+-dependent Na+/Ca+ exchanger
related-protein. This model models a family of
bacterial and archaeal proteins that is homologous,
except for lacking a central region of ~ 250 amino acids
and an N-terminal region of > 100 residues, to a
functionally proven potassium-dependent sodium-calcium
exchanger of the rat [Unknown function, General].
Length = 307
Score = 33.5 bits (77), Expect = 0.13
Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 11/68 (16%)
Query: 132 IKSHSWVIRVNF---LVFIFLMRRVFF--------LFIVIFLLLILLFFFIGLEQRRKND 180
I +R + L+ L+ +++ L ++ L F + E+ K D
Sbjct: 93 IIVDKDWLRRDILFYLLVSILLLFFGLDGQISRIDGVVLLILYIVYLLFLVKNERWVKYD 152
Query: 181 NKSQMGSG 188
++
Sbjct: 153 TYTEENLD 160
>gnl|CDD|219521 pfam07695, 7TMR-DISM_7TM, 7TM diverse intracellular signalling.
This entry represents the transmembrane region of the
7TM-DISM (7TM Receptors with Diverse Intracellular
Signalling Modules).
Length = 207
Score = 33.0 bits (76), Expect = 0.13
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 142 NFLVFIFLMRRVFFLFIVIFLLLILLFFFI 171
N +F L R +L+ V+++L LL+
Sbjct: 19 NLFLFFSL-RDRSYLYYVLYILSFLLYQLS 47
Score = 32.2 bits (74), Expect = 0.21
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 16/54 (29%)
Query: 134 SHSWVIRVNFLVFIFL----------------MRRVFFLFIVIFLLLILLFFFI 171
+ + + LV F + R+ ++ LLL+LL
Sbjct: 66 NKLLYLFLALLVIFFALLFARSFLELKKYLPRLDRLLLGLALLLLLLLLLAPLF 119
>gnl|CDD|222700 pfam14348, DUF4400, Domain of unknown function (DUF4400). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 209 and 249 amino
acids in length. There is a single completely conserved
residue P that may be functionally important.
Length = 189
Score = 32.6 bits (75), Expect = 0.14
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 135 HSWVIRVNFLVFIFLMR-RVFFLFIVIFLLLILLFFFIGLEQRR 177
S+++ ++++FL R + L++ +FLL L GL +R
Sbjct: 82 RSYLLAFWLVLYVFLYRLAILLLWLPLFLLAALAGLVDGLVRRD 125
>gnl|CDD|233951 TIGR02614, ftsW, cell division protein FtsW. This family consists
of FtsW, an integral membrane protein with ten
transmembrane segments. In general, it is one of two
paralogs involved in peptidoglycan biosynthesis, the
other being RodA, and is essential for cell division.
All members of the seed alignment for this model are
encoded in operons for the biosynthesis of
UDP-N-acetylmuramoyl-pentapeptide, a precursor of murein
(peptidoglycan). The FtsW designation is not used in
endospore-forming bacterial (e.g. Bacillus subtilis),
where the member of this family is designated SpoVE and
three or more RodA/FtsW/SpoVE family paralogs are
present. SpoVE acts in spore cortex formation and is
dispensible for growth. Biological rolls for FtsW in
cell division include recruitment of penicillin-binding
protein 3 to the division site [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan, Cellular processes, Cell division].
Length = 356
Score = 33.3 bits (77), Expect = 0.14
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 113 SSSSSSLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLM------RR--VFFLFIVIFLLL 164
S+S+++ L + + + + + L+F+ R+ V L I I LL+
Sbjct: 20 YSASAAVALRLGGDPFYFLKRQLFYALLGLILMFVASRLPLRFWRKLSVPILLIAIVLLV 79
Query: 165 ILLFFFIGLE 174
++L IG E
Sbjct: 80 LVLIPGIGKE 89
>gnl|CDD|223839 COG0768, FtsI, Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane].
Length = 599
Score = 33.5 bits (77), Expect = 0.15
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 150 MRRVFFLFIVIFLLLILLFFFIGLEQRRKNDNKSQMGSGLEQSRRSDN 197
RR+ LF++IFLL LL + Q + D+ ++ + +++R+
Sbjct: 14 RRRLNLLFLIIFLLFALLILRLFYLQIVQGDDYAKEAA--NRNQRTVP 59
>gnl|CDD|217354 pfam03073, TspO_MBR, TspO/MBR family. Tryptophan-rich sensory
protein (TspO) is an integral membrane protein that acts
as a negative regulator of the expression of specific
photosynthesis genes in response to oxygen/light. It is
involved in the efflux of porphyrin intermediates from
the cell. This reduces the activity of
coproporphyrinogen III oxidase, which is thought to lead
to the accumulation of a putative repressor molecule
that inhibits the expression of specific photosynthesis
genes. Several conserved aromatic residues are necessary
for TspO function: they are thought to be involved in
binding porphyrin intermediates. In, the rat
mitochondrial peripheral benzodiazepine receptor (MBR)
was shown to not only retain its structure within a
bacterial outer membrane, but also to be able to
functionally substitute for TspO in TspO- mutants, and
to act in a similar manner to TspO in its in situ
location: the outer mitochondrial membrane. The
biological significance of MBR remains unclear, however.
It is thought to be involved in a variety of cellular
functions, including cholesterol transport in
steroidogenic tissues.
Length = 147
Score = 32.2 bits (74), Expect = 0.16
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 141 VNFL---VFIFLMRRVFFLFIVIFLLLILLFFFI 171
+N L +F F + IVI LL +L+ I
Sbjct: 81 LNALWSPLF-FGLHSPGLALIVILLLWLLVLATI 113
>gnl|CDD|222119 pfam13425, O-antigen_lig, O-antigen ligase like membrane protein.
Length = 136
Score = 31.6 bits (72), Expect = 0.19
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 143 FLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQRR 177
L+ + L+++ L I++ +L ++ + R
Sbjct: 30 ALLLLLLLKKRRKLLILLAILGVIALLVLSGRFSR 64
>gnl|CDD|216575 pfam01566, Nramp, Natural resistance-associated macrophage protein.
The natural resistance-associated macrophage protein
(NRAMP) family consists of Nramp1, Nramp2, and yeast
proteins Smf1 and Smf2. The NRAMP family is a novel
family of functional related proteins defined by a
conserved hydrophobic core of ten transmembrane domains.
This family of membrane proteins are divalent cation
transporters. Nramp1 is an integral membrane protein
expressed exclusively in cells of the immune system and
is recruited to the membrane of a phagosome upon
phagocytosis. By controlling divalent cation
concentrations Nramp1 may regulate the interphagosomal
replication of bacteria. Mutations in Nramp1 may
genetically predispose an individual to susceptibility
to diseases including leprosy and tuberculosis
conversely this might however provide protection form
rheumatoid arthritis. Nramp2 is a multiple divalent
cation transporter for Fe2+, Mn2+ and Zn2+ amongst
others it is expressed at high levels in the intestine;
and is major transferrin-independent iron uptake system
in mammals. The yeast proteins Smf1 and Smf2 may also
transport divalent cations.
Length = 364
Score = 32.9 bits (76), Expect = 0.19
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 135 HSWVIRVNFLVFIFLMR-----RVFFLFIVIFLLLILLFFFIGL 173
+ V+ LV + L R I+ + +I L F L
Sbjct: 92 YIGVVITAVLVLLLLFLQRGGYRRLERVIIALVAVIALSFIAEL 135
>gnl|CDD|131651 TIGR02602, 8TM_EpsH, exosortase. This family is designated
exosortase, and it is the predicted protein-sorting
transpeptidase for the PEP-CTERM protein-sorting signal
of many biofilm-producing Gram-negative bacteria. This
system is analogous to the sortase/LPXTG system found
mostly in Gram-positive bacteria. Members of this family
are integral membrane proteins with eight predicted
transmembrane helices in common, and with a triad of
invariant residues that matches the catalytic triad of
sortases. Some members of this family have long trailing
sequences past the region described by this model, which
in other species is a separate protein EpsI. This model
does not include the region of the first predicted
transmembrane region. The only partially characterized
member is EpsH of Methylobacillus sp. 12S, part of a
locus associated with biosynthesis of the
exopolysaccharide methanolan but itself not involved in
polysaccharide biosynthesis [Protein fate, Protein and
peptide secretion and trafficking].
Length = 241
Score = 32.7 bits (75), Expect = 0.20
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 16/81 (19%)
Query: 105 WM-WHKRD---------HSSSSSSLVLS----IVHTDIRVVIKSHSWVIRVNFLVFIFLM 150
++ W KR+ S + LVL ++ + + V + + V L L
Sbjct: 22 YLAWSKRERLSELPSRPSSLGLALLVLGLAAYLLASVLSVTWMASLSL--VALLAGSVLA 79
Query: 151 RRVFFLFIVIFLLLILLFFFI 171
F F ++ L+LL F I
Sbjct: 80 LFGFRAFRLLLFPLLLLLFAI 100
>gnl|CDD|222228 pfam13567, DUF4131, Domain of unknown function (DUF4131). This
domain is frequently found to the N-terminus of the
Competence domain, pfam03772.
Length = 173
Score = 32.0 bits (73), Expect = 0.20
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 143 FLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKND 180
L+ RR L +++ LLL L + +R ND
Sbjct: 28 LLLLYRRKRRRTLLLLLLLLLLGGLGLGLRAYRRAAND 65
Score = 31.6 bits (72), Expect = 0.30
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 143 FLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKNDN 181
L+ + R+ +++ LLL+L +GL R+ N
Sbjct: 26 LLLLLLYRRKRRRTLLLLLLLLLLGGLGLGLRAYRRAAN 64
>gnl|CDD|223843 COG0772, FtsW, Bacterial cell division membrane protein [Cell
division and chromosome partitioning].
Length = 381
Score = 33.0 bits (76), Expect = 0.21
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 113 SSSSSSLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRV---------FFLFIVIFLL 163
+SS+ + + IR ++ ++ + + + L + L+++I LL
Sbjct: 36 ASSAVAERRGPFYFLIRQLV---WLLLGLILALLVILRLPLRFLRKRSFAILLYVIILLL 92
Query: 164 LILLFFF 170
L+L+ FF
Sbjct: 93 LVLVLFF 99
Score = 32.6 bits (75), Expect = 0.26
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 104 KWMWHKRDHSSSSSSLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLL 163
KW+ D L+L+ + V++ S S + F FL+R++ + ++ +L
Sbjct: 8 KWLKRLIDRLLLLLLLLLAAIGL---VMVYSASSAVAERRGPFYFLIRQLVW-LLLGLIL 63
Query: 164 LILLFFFIGLEQRRK 178
+L+ + L RK
Sbjct: 64 ALLVILRLPLRFLRK 78
>gnl|CDD|223866 COG0795, COG0795, Predicted permeases [General function prediction
only].
Length = 364
Score = 32.7 bits (75), Expect = 0.22
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 144 LVFIFLMRRVFFLFIVIFLLLILLFFFIGL 173
L+ +L+R F+ I L+L+ + I L
Sbjct: 3 LLDRYLLREYLKTFLAILLVLLAILLIIDL 32
>gnl|CDD|100082 cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease (S2P), a zinc
metalloprotease (MEROPS family M50B), regulates
intramembrane proteolysis (RIP), and is involved in the
pro-sigmaK pathway of bacterial spore formation. SpoIVFB
(sporulation protein, stage IV cell wall formation, F
locus, promoter-distal B) is one of 4 proteins involved
in endospore formation; the others are SpoIVFA
(sporulation protein, stage IV cell wall formation, F
locus, promoter-proximal A), BofA (bypass-of-forespore
A), and SpoIVB (sporulation protein, stage IV cell wall
formation, B locus). SpoIVFB is negatively regulated by
SpoIVFA and BofA and activated by SpoIVB. It is thought
that SpoIVFB, SpoIVFA, and BofA are located in the
mother-cell membrane that surrounds the forespore and
that SpoIVB is secreted from the forespore into the
space between the two where it activates SpoIVFB.
Length = 208
Score = 32.1 bits (74), Expect = 0.23
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 133 KSHSWVIRVNFLVFIFLMRRVFFLFIV----IFLLLILLFFFIGLEQR 176
++ R+ L I L+ FL + ++LLLI LF ++ E
Sbjct: 157 RATRIAARIGQLFAILLVVLGLFLLFLGLGNLWLLLIALFIYLAAEAE 204
>gnl|CDD|222381 pfam13789, DUF4181, Domain of unknown function (DUF4181).
Length = 109
Score = 31.1 bits (71), Expect = 0.23
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 137 WVIRVNFLVFIFLMRRVFF-----LFIVIFLLLILLFFFIGLEQRR 177
++ + FL+ + + +F ++ +IFL LILLF F + +
Sbjct: 35 IILLIIFLIILIIFIYIFITEYLYMYYLIFLFLILLFAFRAFMEWK 80
>gnl|CDD|205037 pfam12716, Apq12, Nuclear pore assembly and biogenesis. This is a
family of conserved fungal proteins involved in nuclear
pore assembly. Apq12 is an integral membrane protein of
the nuclear envelope (NE) and endoplasmic reticulum. Its
absence leads to a partial block in mRNA export and
cold-sensitive defects in the growth and localisation of
a subset of nucleoporins, particularly those
asymmetrically localised to the cytoplasmic fibrils. The
defects in nuclear pore assembly appear to be due to
defects in regulating membrane fluidity.
Length = 54
Score = 29.5 bits (67), Expect = 0.25
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 130 VVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILL 167
+ +K + RV I ++R +F+L IV + + L
Sbjct: 16 ISLKILDYARRVVMFWLILVVRLLFWLAIVGLGVYVYL 53
>gnl|CDD|177152 MTH00087, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 195
Score = 31.9 bits (73), Expect = 0.25
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 143 FLVFIFLMRRVFFLFI--VIFLLLILLFFF 170
+L + +M F FI IF LI L+
Sbjct: 165 WLSILAIMMECFVAFIQSYIFSRLIYLYLN 194
>gnl|CDD|110122 pfam01098, FTSW_RODA_SPOVE, Cell cycle protein. This entry
includes the following members; FtsW, RodA, SpoVE.
Length = 356
Score = 32.6 bits (75), Expect = 0.26
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 116 SSSLVLSIV--HTDIRVVIKSHSWVIRVNFLVFIFLMR-------RVFFLFIVIFLLLIL 166
S+S V S+V + +++ + F++F+ L+R + F +I LLL++
Sbjct: 21 SASGVTSLVLFGDPFFFFKRQLVYLL-LGFIIFVVLLRIPLRFLRKWAFYLFIIGLLLLV 79
Query: 167 LFFFIGLEQ 175
L F IG
Sbjct: 80 LVFVIGPSV 88
>gnl|CDD|224209 COG1290, QcrB, Cytochrome b subunit of the bc complex [Energy
production and conversion].
Length = 381
Score = 32.7 bits (75), Expect = 0.26
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 143 FLVFIFLMRRVFFLFIVIFLLLILLFFFIG 172
FL F ++R + + + +L F+
Sbjct: 282 FLPFYAILRAIPSKLGGVLAMFPILILFLL 311
>gnl|CDD|217759 pfam03845, Spore_permease, Spore germination protein.
Length = 320
Score = 32.2 bits (74), Expect = 0.27
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 135 HSWVIRVNFL-VFIFLMR-------RVFFLFIVIFLLLILLFFFIGLEQ 175
+W+I + L V I+L+ R F I I L+++L L+Q
Sbjct: 112 PTWIIILTLLLVSIYLISKGIEVLAREFCFIIPILLIILLFILIFSLKQ 160
>gnl|CDD|224900 COG1989, PulO, Type II secretory pathway, prepilin signal peptidase
PulO and related peptidases [Cell motility and secretion
/ Posttranslational modification, protein turnover,
chaperones / Intracellular trafficking and secretion].
Length = 254
Score = 32.4 bits (74), Expect = 0.28
Identities = 9/74 (12%), Positives = 19/74 (25%), Gaps = 15/74 (20%)
Query: 100 SPKQKWMWHKRDHSSSSSSLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIV 159
P + + R SL + + L ++ L +
Sbjct: 25 LPDKLSISLPR-------SLCPFCGRGL--------KLLDLIPLLSYLLLRGKCRICKSK 69
Query: 160 IFLLLILLFFFIGL 173
I + L+ G+
Sbjct: 70 ISIRYPLVELLTGV 83
>gnl|CDD|217705 pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family. Members
of this family are predicted integral membrane proteins
of unknown function. They are about 350 amino acids long
and contain about 6 transmembrane regions. They are
predicted to be permeases although there is no
verification of this.
Length = 354
Score = 32.3 bits (74), Expect = 0.28
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 148 FLMRRVFFLFIVIFLLLILLFFFIGL 173
+++R F+++ L+L+LLF + L
Sbjct: 2 YILREFLKPFLLVLLVLLLLFLLVDL 27
>gnl|CDD|226574 COG4089, COG4089, Predicted membrane protein [Function unknown].
Length = 235
Score = 32.0 bits (73), Expect = 0.28
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 145 VFIFLMRRVFFLFIVIFLLLILLFFFIG 172
+ + F L + LLL+++F F G
Sbjct: 8 IILSPFYGPFRLLLAFLLLLLMMFIFTG 35
>gnl|CDD|179518 PRK02975, PRK02975, putative common antigen polymerase;
Provisional.
Length = 450
Score = 32.3 bits (74), Expect = 0.29
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 137 WVIRVNFLVFI--FLMRRVFFLFIVIFLLLILLFFFIG 172
W++ F+ + F RRV F F V F LL LL F+ G
Sbjct: 13 WLLSTLFIATLTWFEFRRVRFNFNVFFSLLYLLTFYFG 50
>gnl|CDD|240530 cd13125, MATE_like_10, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. This
family might function as a translocase for
lipopolysaccharides, such as O-antigen. The integral
membrane proteins from the MATE family are involved in
exporting metabolites across the cell membrane and are
responsible for multidrug resistance (MDR) in many
bacteria and animals. A number of family members are
involved in the synthesis of peptidoglycan components in
bacteria.
Length = 409
Score = 32.5 bits (75), Expect = 0.29
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 13/52 (25%)
Query: 131 VIKSHSWVIRVNFLVFIFL---MRRVFF----LFIVIFLLLILLFFFI-GLE 174
K SW+ L +I L M ++F LF ++F+LL LLF + GLE
Sbjct: 338 FFKIASWL-----LGYILLAKGMTKLFIITEILFALLFVLLSLLFIPLFGLE 384
>gnl|CDD|217647 pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts
as a virulence factor. In Bordetella pertussis, brkB is
essential for resistance to complement-dependent killing
by serum. This family was originally predicted to be
ribonuclease BN, but this prediction has since been
shown to be incorrect.
Length = 255
Score = 32.2 bits (74), Expect = 0.29
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 118 SLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFF 170
SL+LS+ + + + + + + R +++FLL LL+ F
Sbjct: 128 SLLLSVFLPSLLGFLILLLGLG--LEIAVLLQLLRWLLSLLLLFLLFALLYRF 178
>gnl|CDD|130787 TIGR01726, HEQRo_perm_3TM, amine acid ABC transporter, permease
protein, 3-TM region, His/Glu/Gln/Arg/opine family.
This model represents one of several classes of multiple
membrane spanning regions found immediately N-terminal
to the domain described by pfam00528,
binding-protein-dependent transport systems inner
membrane component. The region covered by This model
generally is predicted to contain three transmembrane
helices. Substrate specificities attributed to members
of this family include histidine, arginine, glutamine,
glutamate, and (in Agrobacterium) the opines octopine
and nopaline [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 99
Score = 30.6 bits (70), Expect = 0.31
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 118 SLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLE 174
LVL ++ +R+ S + +R V++ L R L + F+ L I L
Sbjct: 23 GLVLGLLLALLRL---SGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLIGIRLS 76
>gnl|CDD|224191 COG1272, COG1272, Predicted membrane protein, hemolysin III homolog
[General function prediction only].
Length = 226
Score = 31.8 bits (73), Expect = 0.33
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 99 NSPKQKWMWHKRDHSS-------SSSSLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMR 151
N K K + K DHS S + +L ++ + ++ W + + ++F +
Sbjct: 80 NGQKAKAILRKFDHSGIYVLIAGSYTPFLLVGLYGPLGWILLGLIWGLALAGILFKLFFK 139
Query: 152 RVF-FLFIVIFLL---LILLFFFIGLEQ 175
+ F L +V++L L L+ + +
Sbjct: 140 KRFRKLSLVLYLAMGWLGLIVIKPLIAK 167
>gnl|CDD|148492 pfam06899, WzyE, WzyE protein. This family consists of several
WzyE proteins which appear to be specific to
Enterobacteria. Members of this family are described as
putative ECA polymerases this has been found to be
incorrect. The function of this family is unknown.
Length = 449
Score = 32.1 bits (73), Expect = 0.36
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 137 WVIRVNFLVFI--FLMRRVFFLFIVIFLLLILLFFFIGL 173
+++ + F+ + RRV F F V F LL LL F+ G
Sbjct: 13 YLLSLTFIATLTYREFRRVRFNFNVFFSLLYLLTFYFGF 51
>gnl|CDD|218602 pfam05478, Prominin, Prominin. The prominins are an emerging
family of proteins that among the multispan membrane
proteins display a novel topology. Mouse prominin and
human prominin (mouse)-like 1 (PROML1) are predicted to
contain five membrane spanning domains, with an
N-terminal domain exposed to the extracellular space
followed by four, alternating small cytoplasmic and
large extracellular, loops and a cytoplasmic C-terminal
domain. The exact function of prominin is unknown
although in humans defects in PROM1, the gene coding for
prominin, cause retinal degeneration.
Length = 807
Score = 32.3 bits (74), Expect = 0.36
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 147 IFLMRRV--FFLFIVIFLLLILLFFFIG 172
FLM V FLF +L++L F +G
Sbjct: 461 RFLMAGVGFSFLFSWFLMLVVLALFLVG 488
>gnl|CDD|222537 pfam14093, DUF4271, Domain of unknown function (DUF4271). This
family of integral membrane proteins is functionally
uncharacterized. This family of proteins is found in
bacteria. Proteins in this family are typically between
221 and 326 amino acids in length.
Length = 207
Score = 31.4 bits (72), Expect = 0.40
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 16/85 (18%)
Query: 105 WMWHKRDHSSSSS----SLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMR---RVFFLF 157
W++ K SS LVL +V+ D + ++ + L I L+ ++FF
Sbjct: 121 WLFSKLSLSSYFGLLLFPLVLLLVYFDSLSFYIAVIILLIILLLGKILLLYKYYKIFFRK 180
Query: 158 IVIFLLLIL---------LFFFIGL 173
+ FL IL L +
Sbjct: 181 LFSFLYFILYLCALEIAPLLILYKV 205
Score = 29.9 bits (68), Expect = 1.3
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 7/34 (20%)
Query: 145 VFIFLMRRVFFL-------FIVIFLLLILLFFFI 171
+FI+L R F L IV L+ +F FI
Sbjct: 65 LFIYLYLRDFGLELFFSVQLIVFGLIFGGVFLFI 98
>gnl|CDD|224214 COG1295, Rbn, Ribonuclease BN family enzyme [Replication,
recombination, and repair].
Length = 303
Score = 31.9 bits (73), Expect = 0.40
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 132 IKSHSWVIRVNFLVFIFLMRRVFFLFIVI-FLLLILLFFFIGL 173
+K IR L + + + F LL+ + I L
Sbjct: 131 VKPRRSFIRRRLLSLFW----TLGTLLPLLFALLLSVVGPIAL 169
>gnl|CDD|222658 pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy.
This family includes O-antigen polysaccharide
polymerases. These enzymes link O-units via a glycosidic
linkage to form a long O-antigen. These enzymes vary in
specificity and sequence.
Length = 440
Score = 31.9 bits (73), Expect = 0.43
Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 24/108 (22%)
Query: 111 DHSSSSSSLVLSI-VHTDIRVVIKSHSWVIRVNFLV--FIFLMRRVF------------- 154
+ +L I + + + K + FL+ F+FL R F
Sbjct: 13 NDLLFLLVALLLIWIANFVYALKKLKKRSLYFLFLITFFVFLFGRPFLDYLFGYNDSIFA 72
Query: 155 --------FLFIVIFLLLILLFFFIGLEQRRKNDNKSQMGSGLEQSRR 194
+I L+L LLF F+G RK K + + R
Sbjct: 73 NDFYNEDIIFEALILLILSLLFLFLGYILGRKKKRKKEKKKNQLEYER 120
Score = 29.6 bits (67), Expect = 2.4
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 132 IKSHSWVIRVNFLVFIFLM--RRVFFLFIVIFLLLILLFFFIG 172
I + F +++ ++ ++I+LL +LL G
Sbjct: 171 IILIGSFFPIAFCLYLATKPSKKKILFILIIYLLYLLLSLLTG 213
Score = 29.6 bits (67), Expect = 2.5
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 145 VFIFLMRRVFFLFIVIFLLLILLFFFIGL 173
+F R F FI L LI + I +
Sbjct: 411 NILFAPRSSFSGFISPILSLIFILLLILI 439
Score = 28.0 bits (63), Expect = 7.9
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 137 WVIRVNFLVFIFLM------RRVFFLFIVIFLLLILLFFF 170
V +FL+ I L +R FL ++ LLL + F
Sbjct: 376 GVFIGSFLLGILLRKLDKKFKRNTFLLVLSLLLLPNILFA 415
>gnl|CDD|224748 COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].
Length = 386
Score = 31.7 bits (72), Expect = 0.43
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 134 SHSWVIRVN------FLVFIFLMRRVFFLFIVIFLLLILLFFFI 171
H W + V F + + L+RRV F ++ LLL L FF+
Sbjct: 150 LHLWSLSVEEQFYLLFPLLLLLLRRVRFALALLLLLLALASFFL 193
>gnl|CDD|234638 PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase;
Provisional.
Length = 344
Score = 31.6 bits (73), Expect = 0.44
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 143 FLVFIFLMRRVFFLFIVIFLL-LILLFFFIGLEQRRK 178
F VF +L R + L+ LIL FI ++ K
Sbjct: 1 FNVFRYLTFRALLALLTALLISLILGPRFIRFLRKLK 37
>gnl|CDD|216181 pfam00902, TatC, Sec-independent protein translocase protein
(TatC). The bacterial Tat system has a remarkable
ability to transport folded proteins even enzyme
complexes across the cytoplasmic membrane. It is
structurally and mechanistically similar to the Delta
pH-driven thylakoidal protein import pathway. A
functional Tat system or Delta pH-dependent pathway
requires three integral membrane proteins: TatA/Tha4,
TatB/Hcf106 and TatC/cpTatC. The TatC protein is
essential for the function of both pathways. It might be
involved in twin-arginine signal peptide recognition,
protein translocation and proton translocation. Sequence
analysis predicts that TatC contains six transmembrane
helices (TMHs), and experimental data confirmed that N-
and C-termini of TatC or cpTatC are exposed to the
cytoplasmic or stromal face of the membrane. The
cytoplasmic N-terminus and the first cytoplasmic loop
region of the Escherichia coli TatC protein are
essential for protein export. At least two TatC
molecules co-exist within each Tat translocon.
Length = 212
Score = 31.3 bits (72), Expect = 0.46
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 149 LMRRVFFLFIVIFLLLILLFFF 170
L +R+ + I L I+ +FF
Sbjct: 7 LRKRLIYSLIAFILGFIICYFF 28
>gnl|CDD|226780 COG4330, COG4330, Predicted membrane protein [Function unknown].
Length = 211
Score = 31.3 bits (71), Expect = 0.48
Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 28/106 (26%)
Query: 87 WEVNLLGRAWQCNSPKQKWMWHKRDHSSSSSSLVLSIVH-----------TDIRVVIKSH 135
+E+++ + S ++ W++ L +V TD+ + K
Sbjct: 35 FELSVWLFRKR-RSWRRSWLF-----------WPLFLVFLLFLPNAPYLLTDLIHLQKLE 82
Query: 136 SWVIRVNFLVFIFLMRRVFFLFIVIFLLL---ILLFFFIGLEQRRK 178
+ ++ + I L R +LF+ +F L LL LE+RR+
Sbjct: 83 RYGAELS--LIILLWRPFTYLFLGVFFGLYVMSLLNAGYLLERRRR 126
>gnl|CDD|214413 MTH00062, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 417
Score = 31.8 bits (73), Expect = 0.49
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 24/89 (26%)
Query: 106 MWHKRDHSSSSSSLVLSIVH-TDIRVVIKSHSWVIRV----NFLVFIFL----M------ 150
W D S VLS + T + + H+W+ V + V IFL M
Sbjct: 156 DWGSDDSVSLIVYYVLSFMFITKVPLF-PFHTWLPIVHAEASSPVSIFLSGYIMKLGLLG 214
Query: 151 --RRVFFLF------IVIFLLLILLFFFI 171
R F+F + L +FF I
Sbjct: 215 VYRFCGFIFSGSFLGYLFLCCLFSVFFLI 243
Score = 28.4 bits (64), Expect = 5.5
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 136 SWVIRVNFLVFIFLMRRVF---FLFIVIFLLLILLFFFIGL 173
+ I ++ VF F+F + LILL F+GL
Sbjct: 19 CLLYSSGVGCCILVVNNVFNGLFIFDSLSFYLILLVLFLGL 59
>gnl|CDD|216416 pfam01292, Ni_hydr_CYTB, Prokaryotic cytochrome b561. This family
includes cytochrome b561 and related proteins, in
addition to the nickel-dependent hydrogenases b-type
cytochrome subunit. Cytochrome b561 is a secretory
vesicle-specific electron transport protein. It is an
integral membrane protein, that binds two heme groups
non-covalently. This is a prokaryotic family. Members of
the 'eukaryotic cytochrome b561' family can be found in
Pfam: PF03188.
Length = 140
Score = 30.4 bits (69), Expect = 0.49
Identities = 7/25 (28%), Positives = 18/25 (72%)
Query: 143 FLVFIFLMRRVFFLFIVIFLLLILL 167
+ + L+R ++ + ++++LLL+LL
Sbjct: 50 VFLALLLLRLLWAVHLLLYLLLLLL 74
>gnl|CDD|219137 pfam06687, SUR7, SUR7/PalI family. This family consists of several
fungal-specific SUR7 proteins. Its activity regulates
expression of RVS161, a homologue of human endophilin,
suggesting a function for both in endocytosis. The
protein carries four transmembrane domains and is thus
likely to act as an anchoring protein for the eisosome
to the plasma membrane. Eisosomes are the immobile
protein complexes, that include the proteins Pil1 and
Lsp1, which co-localise with sites of protein and lipid
endocytosis at the plasma membrane. SUR7 protein may
play a role in sporulation. This family also includes
PalI which is part of a pH signal transduction cascade.
Based on the similarity of PalI to the yeast Rim9
meiotic signal transduction component it has been
suggested that PalI might be a membrane sensor for
ambient pH.
Length = 205
Score = 31.2 bits (71), Expect = 0.50
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 120 VLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKN 179
V++++ I S VNFL+ + F ++ L LF N
Sbjct: 124 VIALILAGILAHFSSPRRGSLVNFLLSLL----AFLFTLLAAALDTALFVKA-RNAFNSN 178
Query: 180 DNKSQMGS 187
+ +G
Sbjct: 179 GISASLGP 186
>gnl|CDD|221501 pfam12273, RCR, Chitin synthesis regulation, resistance to Congo
red. RCR proteins are ER membrane proteins that
regulate chitin deposition in fungal cell walls.
Although chitin, a linear polymer of beta-1,4-linked
N-acetylglucosamine, constitutes only 2% of the cell
wall it plays a vital role in the overall protection of
the cell wall against stress, noxious chemicals and
osmotic pressure changes. Congo red is a cell
wall-disrupting benzidine-type dye extensively used in
many cell wall mutant studies that specifically targets
chitin in yeast cells and inhibits growth. RCR proteins
render the yeasts resistant to Congo red by diminishing
the content of chitin in the cell wall. RCR proteins are
probably regulating chitin synthase III interact
directly with ubiquitin ligase Rsp5, and the VPEY motif
is necessary for this, via interaction with the WW
domains of Rsp5.
Length = 124
Score = 30.1 bits (68), Expect = 0.52
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 151 RRVFF-LFIVIFLLLILLFFFIGLEQRRKN 179
R V F +FI+ L+L L I +RR+
Sbjct: 1 RWVLFAIFIIALLILFFLTARINRRRRRRG 30
>gnl|CDD|133466 cd06856, GT_GPT_archaea, UDP-GlcNAc:dolichol-P GlcNAc-1-P
transferase (GPT)-like proteins in archaea. Eukaryotic
GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc
to dolichol-P to form GlcNAc-P-P-dolichol. The reaction
is the first step in the assembly of dolichol-linked
oligosaccharide intermediates and is essential for
eukaryotic N-linked glycosylation. Evidence for the
existence of the N-glycosylation pathway in archaea has
emerged and genes responsible for the pathway have been
identified. A glycosyl transferase gene Mv1751 in M.
voltae encodes for the enzyme that carries out the first
step in the pathway, the attachment of GlcNAc to a
dolichol lipid carrier in the membrane. A lethal
mutation in the alg7 (GPT) gene in Saccharomyces
cerevisiae was successfully complemented with Mv1751,
the archaea gene, indicating that eukaryotic and
archaeal enzymes may use the same substrates and are
evolutionarily closer than the bacterial enzyme, which
uses a different substrate.
Length = 280
Score = 31.4 bits (72), Expect = 0.55
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 137 WVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGL 173
V+ L +FL + + L+ LL IGL
Sbjct: 20 AVLLGFSLGLLFLSALTHSVEALALLITSLLAGLIGL 56
>gnl|CDD|221739 pfam12730, ABC2_membrane_4, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 230
Score = 31.2 bits (71), Expect = 0.55
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 112 HSSSSSSLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFI 171
S S SL+L + + + + + ++ ++F+ L+ R + I I LLLILL +
Sbjct: 123 GSGFSLSLLLGALLLLLLLSLLALLLIL---LILFLSLLLRNSAVAIGIGLLLILLGLLL 179
Query: 172 G 172
G
Sbjct: 180 G 180
Score = 30.8 bits (70), Expect = 0.79
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 118 SLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGL 173
SL+ S++ + ++ + + + + + L ++ LL ILL F+ L
Sbjct: 103 SLLASLLLLLLSLIAGLLLGGSGFSLSLLLGALLLLLLLSLLALLL-ILLILFLSL 157
Score = 29.3 bits (66), Expect = 2.5
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 146 FIFLMRRVFFLFIVIFLLLILLFFFI 171
+ L R FL ++I LL+ L +
Sbjct: 4 LLKLKRTKIFLILLILPLLLALLALL 29
>gnl|CDD|220321 pfam09624, DUF2393, Protein of unknown function (DUF2393). The
function of this protein is unknown. It is always found
as part of a two-gene operon with IPR013416, a protein
that appears to span the membrane seven times. It has so
far been found in the bacteria Nostoc sp. PCC 7120,
Agrobacterium tumefaciens, Rhizobium meliloti, and
Gloeobacter violaceus.
Length = 149
Score = 30.4 bits (69), Expect = 0.57
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 143 FLVFIFL------MRRVFFLFIVIFLLLILLFFFI 171
FL+ +FL L I +LLIL+ FF
Sbjct: 3 FLLILFLGIKLKKKSLALSLIIASIILLILIPFFG 37
>gnl|CDD|221995 pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein
mannosyltransferase. This family contains members that
are not captured by pfam02366.
Length = 158
Score = 30.6 bits (70), Expect = 0.58
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 136 SWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIG 172
+W+I + +F V + LL ILL + +
Sbjct: 7 AWLIALFTKLFGDSEFAVRLPSALAGLLSILLLYLLA 43
>gnl|CDD|236913 PRK11463, fxsA, phage T7 F exclusion suppressor FxsA; Reviewed.
Length = 148
Score = 30.6 bits (70), Expect = 0.60
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 150 MRRVFFLFIVIFLLLILLFFFIG 172
MR LF++ L+ I +F +
Sbjct: 1 MRPFLLLFLLYPLIEIAVFIAVA 23
>gnl|CDD|177154 MTH00091, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 273
Score = 31.0 bits (71), Expect = 0.60
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 141 VNFLVFIFLMRRVFFLFIVIFLLLILLFFFI 171
V F V IF + + + L L+ L F
Sbjct: 204 VTFFVKIFSLSEILKVLGFFLLFLLFLMFLS 234
Score = 29.8 bits (68), Expect = 1.6
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 134 SHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFI 171
S +W+I L F F VFFLF FLL++ L
Sbjct: 147 SFNWLI----LSFFFSFFNVFFLFFYYFLLMLFLIPKF 180
Score = 27.5 bits (62), Expect = 8.4
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 143 FLVFIFLMRRVFFLFIVIFLLLILLFFF 170
LV + + FF ++ LL+ F
Sbjct: 104 LLVLLQFFSKNFFFLLLFGLLICFFQMF 131
>gnl|CDD|222479 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi
transport. This family represents the first three
transmembrane regions of 11-TM proteins involved in
vesicle transport. In S. cerevisiae these proteins are
members of the yeast facilitator superfamily and are
integral membrane proteins localised to the cell
periphery, in particular to the bud-neck region. The
distribution is consistent with a role in late
exocytosis which is in agreement with the proteins'
ability to substitute for the function of Sro7p,
required for the sorting of the protein Enap1 into
Golgi-derived vesicles destined for the cell surface.
Length = 151
Score = 30.6 bits (70), Expect = 0.61
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 128 IRVVIK-SHSWVIRVN------FLVFIFLMRRVFFLFIVIFLLLILL 167
I ++K S +++ FL F+ + + FL + ILL
Sbjct: 57 IPPLLKISDEEILQHAGLDAYVFLRFLKMGIK-IFLVGCVIGWPILL 102
>gnl|CDD|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase. The members
of this family are membrane proteins. In some proteins
this region is found associated with pfam02225. This
family corresponds with Merops subfamily A22B, the type
example of which is signal peptide peptidase. There is a
sequence-similarity relationship with pfam01080.
Length = 291
Score = 31.2 bits (71), Expect = 0.63
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 99 NSPKQKWMWHKRDHSSSSSSLV---LSIVHTDIRVVIKSHSW----VIRVNFLV-FIFLM 150
PK+K ++ + S LV L IV V++ W ++ + + I ++
Sbjct: 77 RFPKKKSKLELKNGRFTYSELVALLLCIVFAVWWYVLRKEHWILQDILGIALCINVIKIL 136
Query: 151 RRVFFL--FIVIFLLLILLFFF 170
R L V +LL LFF+
Sbjct: 137 R----LPNLKVGTILLSGLFFY 154
>gnl|CDD|215864 pfam00335, Tetraspannin, Tetraspanin family.
Length = 221
Score = 30.8 bits (70), Expect = 0.63
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 144 LVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKNDNKSQMGSGLEQSRRSDNKSQ 200
L + L+ LFI+ IL F + ++ +S + GL +S N
Sbjct: 77 LTYFILL---LILFILEIAAGILAFVY-------RDKLESSLKEGLNYKDKSYNDDP 123
>gnl|CDD|217165 pfam02653, BPD_transp_2, Branched-chain amino acid transport system
/ permease component. This is a large family mainly
comprising high-affinity branched-chain amino acid
transporter proteins such as E. coli LivH and LivM, both
of which are form the LIV-I transport system. Also found
with in this family are proteins from the galactose
transport system permease and a ribose transport system.
Length = 267
Score = 31.0 bits (71), Expect = 0.66
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 119 LVLSIVHTDIRVVIKSHSWVIRV-----NFLVFIFLMRRVFFLFIVIFLLLILLFFFIGL 173
L L ++ + S ++ + FL F F + + L + + + L+L G
Sbjct: 97 LTLFLLTGILGGP-AGTSTIVDLLGFPGLFLSFGFGVIFLLALLLALLVWLLLRRTRFGR 155
>gnl|CDD|192487 pfam10225, DUF2215, Uncharacterized conserved protein (DUF2215).
This entry is the central 200 residues of a family of
proteins conserved from worms to humans. The function is
unknown.
Length = 248
Score = 30.8 bits (70), Expect = 0.67
Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 8/106 (7%)
Query: 135 HSWVIRVNFLVFIF---LMRRVFFLFIVIFLLLILLFFFIG--LEQRRKNDNKSQMGSG- 188
W +++ L I L + +++ LL L I RK + Q GS
Sbjct: 130 VKWTLQLIALTLILQSSLDPLLATGALILALLTKFLLTPISWLKGLYRKYRRRFQPGSRR 189
Query: 189 --LEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQ 232
E+ + + S LE+ R N SR +
Sbjct: 190 LLTEEEYEEQGEIETDSSLEELREYCNSPDCSPWKTFSRLRSPRRF 235
>gnl|CDD|223913 COG0843, CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit
1 [Energy production and conversion].
Length = 566
Score = 31.5 bits (72), Expect = 0.70
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 14/49 (28%)
Query: 136 SWVIRVNFLVFIFLMRR-----------VFFLFIVIFLLLILLFFFIGL 173
S + +NF+V I MR + + I L +L F L
Sbjct: 161 SLLGAINFIVTILNMRAPGMTMMKMPLFTWSILITAIL---ILLAFPVL 206
>gnl|CDD|223425 COG0348, NapH, Polyferredoxin [Energy production and conversion].
Length = 386
Score = 31.3 bits (71), Expect = 0.71
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 123 IVHTDIRVVIKSHSWVIRV--NFLVFIFLMRRVFFLFIVI----FLLLILLFFFIGL 173
+V ++ S W+ + ++ FL R F + FLLL LL
Sbjct: 14 LVLLATLILFLSTPWLRVLGSQAVLLDFLGRPFGFFGLQFWAQEFLLLALLLIGALF 70
>gnl|CDD|177215 MTH00158, ATP8, ATP synthase F0 subunit 8; Provisional.
Length = 32
Score = 27.8 bits (63), Expect = 0.74
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 154 FFLFIVIFLLLILLFFFI 171
F LF++ F+L +L +FI
Sbjct: 13 FILFLITFILFNILNYFI 30
>gnl|CDD|233180 TIGR00912, 2A0309, spore germination protein (amino acid permease).
This model describes spore germination protein GerKB
and paralogs from Bacillus subtilis, Clostridium tetani,
and other known or predicted endospore-forming members
of the Firmicutes (low-GC Gram positive bacteria).
Members show some similarity to amino acid permeases
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 359
Score = 31.1 bits (71), Expect = 0.78
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 119 LVLSIVHTDIRVVIKSHSWVIRVN-FLVFIFLMRRVFFLFIVIFLLLILLFFFIGLE 174
+++ I+ I +V K ++R L+ IFL+ + L ++ L + LE
Sbjct: 118 IIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFILVLILLAPKLGNIKNLLPVLE 174
>gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease
component [Defense mechanisms].
Length = 286
Score = 31.1 bits (70), Expect = 0.79
Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 119 LVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLM----------RRVFFLFIVIFLLLILLF 168
L++S V ++ K +++ + + + L+ L +++ LLL+L
Sbjct: 123 LLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLAT 182
Query: 169 FFIGL 173
+GL
Sbjct: 183 VALGL 187
>gnl|CDD|225764 COG3223, COG3223, Predicted membrane protein [Function unknown].
Length = 138
Score = 30.0 bits (68), Expect = 0.79
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 15/50 (30%)
Query: 139 IRVNFLVFIFLMRRVFFLFIVIFLLL-----------ILLFF----FIGL 173
I + ++ +FL++ L +V F IL+FF FI L
Sbjct: 25 IELGLILVVFLIKETVHLALVAFFSGSVVSYYELLEGILIFFLYFEFIAL 74
>gnl|CDD|216329 pfam01148, CTP_transf_1, Cytidylyltransferase family. The members
of this family are integral membrane protein
cytidylyltransferases. The family includes phosphatidate
cytidylyltransferase EC:2.7.7.41 as well as Sec59 from
yeast. Sec59 is a dolichol kinase EC:2.7.1.108.
Length = 259
Score = 30.8 bits (70), Expect = 0.80
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 10/46 (21%)
Query: 128 IRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGL 173
R++ +H +I L+F+ L FL +IFLLL+ + L
Sbjct: 2 QRII--THIVLI----LIFLIL----LFLGPLIFLLLVAAIIILAL 37
>gnl|CDD|219503 pfam07666, MpPF26, M penetrans paralogue family 26. These proteins
include those ascribed to M penetrans paralogue family
26 in.
Length = 133
Score = 29.7 bits (67), Expect = 0.83
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 136 SWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFI-GLEQRRKNDNKSQMGSGL 189
+ +I V ++ + + F +I F+L I+L I L+ + K + L
Sbjct: 57 NLLIGVLLILLDDI---IVFFYIANFILEIILTIKISLLKGKHPEFKKVSLHKIL 108
>gnl|CDD|224596 COG1682, TagG, ABC-type polysaccharide/polyol phosphate export
systems, permease component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 263
Score = 30.6 bits (70), Expect = 0.85
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 143 FLVFIFLMRRV---FFLFIVIFLLLILLFFFIGL 173
+ I L + L + LLLIL +GL
Sbjct: 130 LIFLIILGVEPSWHWLLLLPALLLLILFSVGLGL 163
Score = 28.7 bits (65), Expect = 3.3
Identities = 7/36 (19%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 140 RVNFLVFIFLMRRV---FFLFIVIFLLLILLFFFIG 172
++NF I + R F F++ +++++ +G
Sbjct: 102 KINFPPLILPVARTLSRLFNFLIHLIIILIFLIILG 137
Score = 28.7 bits (65), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 141 VNFLVFIFLMRRVFFLFIVIFLLL-ILLFFFI 171
V LVF L+R L + +LL ++L+FF
Sbjct: 52 VYTLVFGALLRS-PGLNFLAYLLAGLILWFFF 82
>gnl|CDD|233283 TIGR01131, ATP_synt_6_or_A, ATP synthase subunit 6
(eukaryotes),also subunit A (prokaryotes). Bacterial
forms should be designated ATP synthase, F0 subunit A;
eukaryotic (chloroplast and mitochondrial) forms should
be designated ATP synthase, F0 subunit 6. The F1/F0 ATP
synthase is a multisubunit, membrane associated enzyme
found in bacteria and mitochondria and chloroplast. This
enzyme is principally involved in the synthesis of ATP
from ADP and inorganic phosphate by coupling the energy
derived from the proton electrochemical gradient across
the biological membrane. A brief description of this
multisubunit enzyme complex: F1 and F0 represent two
major clusters of subunits. Individual subunits in each
of these clusters are named differently in prokaryotes
and in organelles e.g., mitochondria and chloroplast.
The bacterial equivalent of subunit 6 is named subunit
'A'. It has been shown that proton is conducted though
this subunit. Typically, deprotonation and reprotonation
of the acidic amino acid side-chains are implicated in
the process [Energy metabolism, ATP-proton motive force
interconversion].
Length = 226
Score = 30.6 bits (70), Expect = 0.88
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 103 QKWMWHKRDHSSSSSSLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFL 162
+W+ S ++ ++ + ++KS + F IF FLFI+I
Sbjct: 36 SRWLI------PSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIF----TLFLFILISN 85
Query: 163 LLILLFFF 170
LL L+ +
Sbjct: 86 LLGLIPYS 93
>gnl|CDD|216594 pfam01594, UPF0118, Domain of unknown function DUF20. This
transmembrane region is found in putative permeases and
predicted transmembrane proteins it has no known
function. It is not clear what source suggested that
these proteins may be permeases and this information
should be treated with caution.
Length = 327
Score = 30.7 bits (70), Expect = 0.89
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 141 VNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGL 173
V FL + R + +V+ L L+ L L
Sbjct: 39 VRFLK-RRGIPRSLAILLVLLLFLVALVLLGLL 70
>gnl|CDD|234919 PRK01209, cobD, cobalamin biosynthesis protein; Provisional.
Length = 312
Score = 30.5 bits (70), Expect = 0.96
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 147 IFLMRRVFFLFIVIFLLLILLF 168
+ L+RR L++ +F L+LL
Sbjct: 291 LKLVRRAVLLWLALFAALLLLL 312
>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter.
Length = 210
Score = 30.3 bits (69), Expect = 1.0
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 143 FLVFIFLM----RRVFFLFIVIFLLLILLFFFIGL 173
FL+ ++ M FFLF+++ LL L +GL
Sbjct: 115 FLLIVYFMVGLPVSRFFLFLLVLLLTALAASGLGL 149
>gnl|CDD|234471 TIGR04104, cxxc_20_cxxc, cxxc_20_cxxc protein. This small,
uncommon, poorly conserved protein is found primarily in
the Firmicutes. It features are pair of CxxC motifs
separated by about 20 amino acids, followed by a highly
hydrophobic region of about 45 amino acids. It has no
conserved gene neighborhood, and its function is
unknown.
Length = 94
Score = 28.9 bits (65), Expect = 1.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 141 VNFLVFIFLMRRVFFLFIVIFLLLILLFFF 170
+ FL IF + + + I I LLL+++
Sbjct: 56 ILFLSNIFGLPFILIILIYIILLLLIVLLT 85
>gnl|CDD|205807 pfam13630, SdpI, SdpI/YhfL protein family. This family of proteins
includes the SdpI and YhfL proteins from B. subtilis.
The SdpI protein is a multipass integral membrane
protein that protects toxin-producing cells from being
killed. Killing is mediated by the exported toxic
protein SdpC an extracellular protein that induces the
synthesis of an immunity protein.
Length = 72
Score = 28.3 bits (64), Expect = 1.0
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 143 FLVFIFLMRRVFFLFIVIFLLLILLFFFI 171
L + L L ++I + +I+ +
Sbjct: 43 LLGLLILDILFLILLLLILVAVIIPIIYS 71
>gnl|CDD|200378 TIGR04127, flavo_near_exo, exosortase F-associated protein.
Members of this protein family are always found next to
an exosortase/archaeosortase-like protein, and occur so
far only in the flavobacteria, within the Bacteroidetes.
Members do not have an obvious PEP-CTERM-like C-terminal
protein sorting domain.
Length = 136
Score = 29.5 bits (67), Expect = 1.0
Identities = 11/51 (21%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 131 VIKSHSWVIRVNFLVFIFLMRRVF----------FLFIVIFLLLILLFFFI 171
+ + S+ +N L+ + ++ +F L++V+F++LI+LF+ +
Sbjct: 48 LFANLSFRYLLNTLLSLLIIYILFKDKGIIKFSAILYLVVFVILIILFYIL 98
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor
Srv. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srv is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 283
Score = 30.3 bits (69), Expect = 1.1
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 12/62 (19%)
Query: 138 VIRVNFL-VFIFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKNDNKSQMGSGLEQSRRSD 196
VI+ L IF VF I + LFF I R+K + SQ +S + +
Sbjct: 160 VIQRFTLIALIF----VFVTCIYCIIAYGALFFVI----RKKFNKNSQ---TKSKSLKRE 208
Query: 197 NK 198
+
Sbjct: 209 VR 210
Score = 29.9 bits (68), Expect = 1.7
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 139 IRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFI 171
+R+ F VFI + F++I + IL +F
Sbjct: 209 VRLAFQVFI-----LVLAFLIILIFYILSNYFS 236
>gnl|CDD|220690 pfam10321, 7TM_GPCR_Srt, Serpentine type 7TM GPCR chemoreceptor
Srt. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srt is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 313
Score = 30.6 bits (70), Expect = 1.1
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 17/67 (25%)
Query: 105 WMWHKRDHSSSSSSLVLSIVHTDIRVV-IKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLL 163
WM S ++S++L+I R + I L FIF ++ + + I+ +
Sbjct: 117 WM------GSCATSILLAI----NRCLDINPPFP------LAFIFEGKKTYIVLILPIIY 160
Query: 164 LILLFFF 170
I FF
Sbjct: 161 GIYFLFF 167
>gnl|CDD|223833 COG0762, COG0762, Predicted integral membrane protein [Function
unknown].
Length = 96
Score = 28.7 bits (65), Expect = 1.1
Identities = 5/31 (16%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 141 VNFLVFIFLMRRVFFLFIVIFLLLILLFFFI 171
L+ + + V + I +++ L+L+ +
Sbjct: 2 FLMLILLLSLL-VLLILIGVYIFLLLIRALL 31
>gnl|CDD|217009 pfam02386, TrkH, Cation transport protein. This family consists of
various cation transport proteins (Trk) and V-type
sodium ATP synthase subunit J or translocating ATPase J
EC:3.6.1.34. These proteins are involved in active
sodium up-take utilising ATP in the process. TrkH a
member of the family from E. coli is a hydrophobic
membrane protein and determines the specificity and
kinetics of cation transport by the TrK system in E.
coli.
Length = 334
Score = 30.3 bits (69), Expect = 1.1
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 130 VVIKSHSWV--IRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGL 173
V ++ W+ + +F+ R FL ++ + ILL + +
Sbjct: 103 VHLRLLIWIRKKKKELSLFLKDHPRRTFLLLLPGFITILLLEVLVV 148
>gnl|CDD|164750 MTH00204, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 485
Score = 30.8 bits (70), Expect = 1.1
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 119 LVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVF--FLFIVIFLLLILLFFFIGLE 174
++L+ + I ++I SW + FL FL+ +F L I +F +L LL F+I E
Sbjct: 89 ILLTTLLIPICILI---SWK-SIKFLFKEFLLCLLFLEVLLIGVFSVLDLLLFYILFE 142
>gnl|CDD|219354 pfam07264, EI24, Etoposide-induced protein 2.4 (EI24). This family
contains a number of eukaryotic etoposide-induced 2.4
(EI24) proteins approximately 350 residues long as well
as bacterial CysZ proteins (formerly known as DUF540).
In cells treated with the cytotoxic drug etoposide, EI24
is induced by p53. It has been suggested to play an
important role in negative cell growth control.
Length = 205
Score = 30.2 bits (69), Expect = 1.1
Identities = 8/35 (22%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 136 SWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFF 170
SW++ + ++ + ++ ++FLF+V+ L+ F+
Sbjct: 56 SWLLWILAVLLLLVL--LWFLFVVVASLIAAPFWT 88
>gnl|CDD|221690 pfam12650, DUF3784, Domain of unknown function (DUF3784). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and archaea.
Proteins in this family are typically between 96 and 110
amino acids in length.
Length = 96
Score = 28.7 bits (65), Expect = 1.2
Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 141 VNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGL--EQRRK 178
+ L+ +FL + +F+ +I +++L+F I L R++
Sbjct: 59 IGALLSLFLSK--YFIIAIIAFIVLLIFLVIYLAKGNRKR 96
>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase. This family
includes the well known DHHC zinc binding domain as well
as three of the four conserved transmembrane regions
found in this family of palmitoyltransferase enzymes.
Length = 167
Score = 29.8 bits (67), Expect = 1.2
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 136 SWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFI 171
+ + R N F+ + +L + + LLL+L F+++
Sbjct: 77 NCIGRRNHKYFLLF---LLYLTLYLILLLVLSFYYL 109
Score = 28.6 bits (64), Expect = 2.6
Identities = 7/57 (12%), Positives = 16/57 (28%)
Query: 117 SSLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGL 173
+ I+ + + F I + L ++ L+ L F +
Sbjct: 93 YLTLYLILLLVLSFYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLLFF 149
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 30.4 bits (69), Expect = 1.2
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 117 SSLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFF 170
+ +L I + I+ ++ ++ I + L I++ L+L L F
Sbjct: 122 AIAILIIFAL---INIRGIKESAKIQNILGIVKLLLPLILIILLGLVLALGGGF 172
>gnl|CDD|217187 pfam02687, FtsX, FtsX-like permease family. This is a family of
predicted permeases and hypothetical transmembrane
proteins. Buchnera aphidicola lolC has been shown to
transport lipids targeted to the outer membrane across
the inner membrane. Both lolC and Streptococcus
cristatus tptD have been shown to require ATP. This
region contains three transmembrane helices.
Length = 121
Score = 29.1 bits (66), Expect = 1.2
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 153 VFFLFIVIFLLLILLFFFIGLEQRRK 178
+ L +++ LL++L I + +RR+
Sbjct: 3 LSVLILLLALLILLNLLSISISERRR 28
>gnl|CDD|177156 MTH00093, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 77
Score = 28.3 bits (64), Expect = 1.2
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 141 VNFLVFIFLMRR-VFFLFIVIFLLLILLFFFIGL 173
++ L+ F +R +F L + FL++ L +F+
Sbjct: 6 ISLLMLFFKYKRLIFILISLEFLMMSLFIYFMYF 39
Score = 26.4 bits (59), Expect = 5.6
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 153 VFFLFIVIFLLLI----LLFFFIGLE 174
+ FLFI + +L L+F I LE
Sbjct: 1 MIFLFISLLMLFFKYKRLIFILISLE 26
>gnl|CDD|237140 PRK12567, PRK12567, putative monovalent cation/H+ antiporter
subunit B; Reviewed.
Length = 218
Score = 29.9 bits (68), Expect = 1.2
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 150 MRRVFFLFIVIFLLLILLFFFIGLEQ 175
M+ V+ L I++ + +LL LE
Sbjct: 1 MKWVYLLAILLLFIKVLLSPSFALEP 26
>gnl|CDD|177124 MTH00049, COX3, cytochrome c oxidase subunit III; Validated.
Length = 215
Score = 29.9 bits (68), Expect = 1.3
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 136 SWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGL 173
SW N F+ FL+ LL+ L+ + + +
Sbjct: 2 SWFPLFN-ASFVGFGLVGLFLWKPFILLVFLILWVLLI 38
>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 445
Score = 30.5 bits (70), Expect = 1.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 154 FFLFIVIFLLLILLFFF 170
FLF+++FLL+ LL F
Sbjct: 88 LFLFLILFLLIFLLLTF 104
>gnl|CDD|223548 COG0472, Rfe, UDP-N-acetylmuramyl pentapeptide
phosphotransferase/UDP-N- acetylglucosamine-1-phosphate
transferase [Cell envelope biogenesis, outer membrane].
Length = 319
Score = 30.3 bits (69), Expect = 1.3
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 143 FLVFIFLMRRVF-FLFIVIFLLLILLFFFIGLE 174
L+ L + ++ + LL +L F IG
Sbjct: 59 ILLASLLAANLLTNPYVWLVLLGLLGFGLIGFL 91
>gnl|CDD|181988 PRK09609, PRK09609, hypothetical protein; Provisional.
Length = 312
Score = 30.0 bits (68), Expect = 1.4
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 113 SSSSSSLVLSIVHTDIRVVIKSHSWVIRVNFLVFI----FLMRRVFFLFIVIFLLLILLF 168
S ++ ++L I+ I V+ + FI LM + FI++ + +I
Sbjct: 170 SWIAALIILVIIILFIYFVVGFLDPDFFIQSFSFIKNKRSLMILIISGFILMIIFVIWAR 229
Query: 169 FFI 171
FFI
Sbjct: 230 FFI 232
>gnl|CDD|218853 pfam06011, TRP, Transient receptor potential (TRP) ion channel.
This family of proteins are transient receptor potential
(TRP) ion channels. They are essential for cellular
viability and are involved in cell growth and cell wall
synthesis. The genes for these proteins are homologous
to polycystic kidney disease related ion channel genes.
Length = 531
Score = 30.3 bits (69), Expect = 1.4
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 153 VFFLFIVIFLLLILLFFFIGLE 174
+FFL ++ ++++++ F LE
Sbjct: 254 IFFLIVIALIVVLVIQFKFILE 275
>gnl|CDD|214404 MTH00025, ATP8, ATP synthase F0 subunit 8; Validated.
Length = 70
Score = 28.1 bits (63), Expect = 1.4
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 157 FIVIFLLLILLFFFIGLEQRRKN--DNKSQMGSGLEQSRRSD 196
IV+FLLL L FF+ L ++N KS M G S+
Sbjct: 17 LIVLFLLLFFLVFFV-LPTIKRNWLIRKSLMKKGAAFSKGLG 57
>gnl|CDD|225694 COG3152, COG3152, Predicted membrane protein [Function unknown].
Length = 125
Score = 29.2 bits (66), Expect = 1.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 137 WVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGL 173
+VI N ++ + L F L + I +L+LL L
Sbjct: 25 YVILFNLIIGVVLFVLAFILGLSIAGVLVLLTALYLL 61
>gnl|CDD|177155 MTH00092, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 111
Score = 28.7 bits (65), Expect = 1.5
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 143 FLVFIFLMRRVFFLFIVIFLLLILLFFF 170
LV IF+ F +++ LL +L FF
Sbjct: 1 MLVLIFV---FLFTLLLLMLLYLLNFFL 25
Score = 27.2 bits (61), Expect = 6.1
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 14/47 (29%)
Query: 139 IRVNFLVFIFLMRRVFFLF---IVIFLLLI-----------LLFFFI 171
I+ +F + F + +F +F IV+FL L+ +L FI
Sbjct: 48 IQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVSDFSSLISFFMLMIFI 94
>gnl|CDD|146748 pfam04276, DUF443, Protein of unknown function (DUF443). Family of
uncharacterized proteins.
Length = 197
Score = 29.5 bits (67), Expect = 1.5
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 153 VFFLFIVIFLLLILLFFFIGLEQRRKNDNK 182
+ I++ L +++L +I +K K
Sbjct: 91 NIIICIIVILGVLILRLYI----NKKLKLK 116
>gnl|CDD|222059 pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 206
Score = 29.5 bits (67), Expect = 1.6
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 147 IFLMRRVFFLFIVIFLLLILLFFFIG 172
+L+++ + ++IFLLL+++ F
Sbjct: 7 FYLIKKYLKILLIIFLLLLIVIFIFL 32
Score = 28.8 bits (65), Expect = 3.0
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 128 IRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKNDNKSQ 184
I+ +K + + +V + +F +I L+LIL+ + D KS+
Sbjct: 10 IKKYLKILLIIFLLLLIVIFIFLNEDGSIFFIILLILILIMLVLTT---FSYDEKSK 63
Score = 28.4 bits (64), Expect = 3.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 146 FIFLMRRVFFLFIVIFLLLILLFFFI 171
F + + + L I+ LLLI++F F+
Sbjct: 7 FYLIKKYLKILLIIFLLLLIVIFIFL 32
>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane].
Length = 439
Score = 30.3 bits (68), Expect = 1.6
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 129 RVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFI 171
R ++ + L R L + L L+L F+
Sbjct: 282 RGGLQVLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFL 324
>gnl|CDD|220693 pfam10325, 7TM_GPCR_Srz, Serpentine type 7TM GPCR chemoreceptor
Srz. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srz is a solo families
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srz appear to be under
strong adaptive evolutionary pressure.
Length = 266
Score = 29.9 bits (68), Expect = 1.6
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 137 WVIRVNFLVFIFLMRRVFFLF--------IVIFLLLILLFFFI 171
++++ + +FIFL+ + +F +FLLL+ L +I
Sbjct: 45 KMVKITYFLFIFLIIFLILIFFFTKNSIIGFLFLLLLFLILYI 87
Score = 28.7 bits (65), Expect = 4.1
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 141 VNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQ 175
+ ++ F + F+ + LL ++L+ + Q
Sbjct: 59 IFLILIFFFTKNSIIGFLFLLLLFLILYILYIITQ 93
>gnl|CDD|220496 pfam09972, DUF2207, Predicted membrane protein (DUF2207). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 503
Score = 30.0 bits (68), Expect = 1.7
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 137 WVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKN 179
+ N + L+ + L +V+ +LLIL+ + I L+ R+
Sbjct: 216 YAREANIRKNLLLI--LLPLLLVLLILLILIPYLIWLKYGREP 256
>gnl|CDD|116129 pfam07509, DUF1523, Protein of unknown function (DUF1523).
Length = 174
Score = 29.2 bits (66), Expect = 1.7
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Query: 121 LSIVHTDIRVVIKSHSWVIRVNFL-VF---IFL-------MRRVFFLFIVIFLLLILLFF 169
LS V I + W R+N +F + + +R + + I+ ++LL+LL F
Sbjct: 107 LSTADDPQWVEITYYGW--RINMFSIFPNAVSIKPVTEPDVRSIPWFNIIFYVLLLLLLF 164
Query: 170 FI 171
Sbjct: 165 LS 166
>gnl|CDD|222635 pfam14264, Glucos_trans_II, Glucosyl transferase GtrII. This
family includes glucosyl transferase II from the
Shigella phage SfII, which mediates seroconversion of S.
flexneri when the phage is integrated into the host
chromosome.
Length = 317
Score = 29.9 bits (68), Expect = 1.7
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 109 KRDHSSSSSSLVLSIVH--TDIRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLIL 166
+ SSL+LS+ I IK +FL ++ +++I LLL+
Sbjct: 201 ELSDYQGISSLILSLKDLLKSILNNIKEF-----FSFLKSQS--GYPYYTYLLIVLLLLF 253
Query: 167 LFFFIGLEQRRKNDNKS 183
L + + ++RK K
Sbjct: 254 LLLILLVVRKRKKRKKP 270
>gnl|CDD|216595 pfam01595, DUF21, Domain of unknown function DUF21. This
transmembrane region has no known function. Many of the
sequences in this family are annotated as hemolysins,
however this is due to a similarity to Treponema
hyodysenteriae hemolysin C that does not contain this
domain. This domain is found in the N-terminus of the
proteins adjacent to two intracellular CBS domains
pfam00571.
Length = 182
Score = 29.5 bits (67), Expect = 1.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 155 FLFIVIFLLLILLFFFIGLE 174
L ++I LLL+L FF E
Sbjct: 1 LLLLIIVLLLLLSAFFSASE 20
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein. This family contains
Sodium, Potassium, Calcium ion channels. This family is
6 transmembrane helices in which the last two helices
flank a loop which determines ion selectivity. In some
sub-families (e.g. Na channels) the domain is repeated
four times, whereas in others (e.g. K channels) the
protein forms as a tetramer in the membrane. A bacterial
structure of the protein is known for the last two
helices but is not the Pfam family due to it lacking the
first four helices.
Length = 194
Score = 29.6 bits (67), Expect = 1.8
Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 19/71 (26%)
Query: 120 VLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVFFLF-------------------IVI 160
L ++ + + +++ + ++ + + R+ L ++
Sbjct: 37 FLVVLPSLVSLILFLLGEDSGLLRVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSLKSLLN 96
Query: 161 FLLLILLFFFI 171
LLL+LL FI
Sbjct: 97 LLLLLLLLLFI 107
>gnl|CDD|204446 pfam10322, 7TM_GPCR_Sru, Serpentine type 7TM GPCR chemoreceptor
Sru. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Sru is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 307
Score = 29.5 bits (67), Expect = 1.9
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 147 IFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKNDNKSQMGSGLEQSRRS 195
IF + F I+ +L ILLF + ++ K S S ++SR++
Sbjct: 198 IFHLLNSVFWLILCLILNILLFVKL---RKAKLKLSSNRTS--KKSRKA 241
>gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases
[Cell envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism].
Length = 588
Score = 29.9 bits (68), Expect = 1.9
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 14/86 (16%)
Query: 126 TDIRVVIKSHSWVIRVNFLVFIF---LMRRVFFLFIVIFLLLILL--FFFIGLEQRRKND 180
+D+ +++K+ V+ L F L R V ++ ++ +LI F L + D
Sbjct: 55 SDLFIILKAVLTSALVSLLFFSTRTDLPRSVVLVYWLLLFVLIGASRLLFRALRDALQKD 114
Query: 181 NKSQ---MGSG------LEQSRRSDN 197
N+ + +G+G L RR
Sbjct: 115 NRIRLLIIGAGSAGDLLLRALRRDPE 140
>gnl|CDD|227100 COG4758, COG4758, Predicted membrane protein [Function unknown].
Length = 235
Score = 29.6 bits (67), Expect = 2.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 144 LVFIFLMRRVFFLFIVIFLLLILLFFF 170
L+ I ++ F + ++FLL +LLF
Sbjct: 17 LMIIQIVIETLFFWPLVFLLALLLFRI 43
>gnl|CDD|225574 COG3030, FxsA, Protein affecting phage T7 exclusion by the F
plasmid [General function prediction only].
Length = 158
Score = 28.8 bits (65), Expect = 2.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 149 LMRRVFFLFIVIFLLLILLFFFIG 172
+MR +F LF++ L+ I LF ++G
Sbjct: 1 MMRLLFLLFLLYPLIEIALFIWVG 24
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 29.6 bits (67), Expect = 2.1
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 104 KWMWHKRDHSSSSSSLVLSIVHTDIRVVIKSHSWV-IRVNFLVFIFLMRRVFFLFIVIFL 162
K++ + + IV + + + + + RRV+ L + FL
Sbjct: 167 KFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFL 226
Query: 163 LLILLFFFI 171
+ I L FF+
Sbjct: 227 VNIGLGFFL 235
>gnl|CDD|225844 COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes
[Cell envelope biogenesis, outer membrane].
Length = 424
Score = 29.8 bits (67), Expect = 2.1
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 143 FLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQR 176
L FL+ ++ L+I + L + F+
Sbjct: 7 ILALSFLIPKLGALWIAALVFLFISLAFLAGLGS 40
>gnl|CDD|216251 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1.
Programmed cell-death involves a set of Bcl-2 family
proteins, some of which inhibit apoptosis (Bcl-2 and
Bcl-XL) and some of which promote it (Bax and Bak).
Human Bax inhibitor, BI-1, is an evolutionarily
conserved integral membrane protein containing multiple
membrane-spanning segments predominantly localised to
intracellular membranes. It has 6-7 membrane-spanning
domains. The C termini of the mammalian BI-1 proteins
are comprised of basic amino acids resembling some
nuclear targeting sequences, but otherwise the predicted
proteins lack motifs that suggest a function. As plant
BI-1 appears to localise predominantly to the ER, we
hypothesized that plant BI-1 could also regulate cell
death triggered by ER stress. BI-1 appears to exert its
effect through an interaction with calmodulin.
Length = 205
Score = 29.1 bits (66), Expect = 2.2
Identities = 5/42 (11%), Positives = 17/42 (40%)
Query: 136 SWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQRR 177
++++ + L + ++ LLI +F +++
Sbjct: 22 AYLVLSTPALLQLLFPLFWVGLLLPLALLIFVFLLFSRIKKK 63
>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid
transport and metabolism].
Length = 228
Score = 29.4 bits (66), Expect = 2.4
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 130 VVIKSHSW--VIRVNFLVFIFLMRRVFFLFI-VIFLLLILLFFFIGL 173
+ S + ++ FL+F F + FL + L+LIL++ L
Sbjct: 133 SLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWLLYSL 179
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 29.3 bits (66), Expect = 2.4
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 143 FLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKNDNKS 183
L +F R F + ++ LL +L + ++
Sbjct: 143 LLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPK 183
>gnl|CDD|221085 pfam11337, DUF3139, Protein of unknown function (DUF3139). This
family of proteins with unknown function appears to be
restricted to Firmicutes.
Length = 85
Score = 27.8 bits (62), Expect = 2.4
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 150 MRRVFFLFIVIFLLLILLF----FFIGLEQRRKNDNKSQMGSGLEQSRRSDNK 198
M++ +FIVI L++I LF F Q +++ + L + +++
Sbjct: 1 MKKYKVIFIVIILIVISLFVGIVLFFAGNQYQRHKALKAIDWYLAKQGIKEDQ 53
>gnl|CDD|217749 pfam03824, NicO, High-affinity nickel-transport protein. High
affinity nickel transporters involved in the
incorporation of nickel into H2-uptake hydrogenase and
urease enzymes. Essential for the expression of
catalytically active hydrogenase and urease. Ion uptake
is dependent on proton motive force. HoxN in Alcaligenes
eutrophus is thought to be an integral membrane protein
with seven transmembrane helices. The family also
includes a cobalt transporter.
Length = 278
Score = 29.3 bits (66), Expect = 2.5
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 7/79 (8%)
Query: 118 SLVLSIVHTDIRVVIKSHSWVI-----RVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIG 172
SL S V + +++ ++ I + FL I+ LL
Sbjct: 45 SLGHSSVVGLVALLLALGVKLVLRLPSLQEIGSTIGTLVSGSFLLIIGL--GNLLLLREL 102
Query: 173 LEQRRKNDNKSQMGSGLEQ 191
RK LE
Sbjct: 103 RHLFRKLRRGRAPEPDLEA 121
>gnl|CDD|226960 COG4597, BatB, ABC-type amino acid transport system, permease
component [Amino acid transport and metabolism].
Length = 397
Score = 29.4 bits (66), Expect = 2.5
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 12/55 (21%)
Query: 134 SHSWVIRVNFLVFIFLMR------RVFFLFIVIFLLL------ILLFFFIGLEQR 176
S +W+IR V++ + R ++FF + + +L + L I L R
Sbjct: 120 SDNWLIRKLSTVYVEIFRNIPPLLQIFFWYFGVLSVLPGARQSVSLPDLIFLSNR 174
>gnl|CDD|223731 COG0658, ComEC, Predicted membrane metal-binding protein [General
function prediction only].
Length = 453
Score = 29.4 bits (66), Expect = 2.6
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 116 SSSLVLSIVHTDIRVVIKSH---SW--VIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFF 170
S L+L V + + I SW ++ L+ + L+ + L+L+L FF
Sbjct: 6 LSRLLLRFVAALLLLGILLALLLSWLPLLLAALLLLLALLLARALPLSKLLLVLLLAFFL 65
Query: 171 IGLEQRRKNDNKSQ 184
+G+ S
Sbjct: 66 LGIFAALFLLLLSL 79
>gnl|CDD|227696 COG5409, COG5409, EXS domain-containing protein [Signal
transduction mechanisms].
Length = 384
Score = 29.4 bits (66), Expect = 2.7
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 28/80 (35%)
Query: 96 WQCNSPKQKWMWHKRDHSSSSSSLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVFF 155
W +S W KR ++K H +I +NFL+ R +
Sbjct: 289 WSLDSLTSLRSWSKRAV-----------------TLLKYHIAMI-INFLL------RFSW 324
Query: 156 LFIVIFLLLIL----LFFFI 171
+ + I +F FI
Sbjct: 325 IVYYLPPNHIQHSADIFIFI 344
>gnl|CDD|223692 COG0619, CbiQ, ABC-type cobalt transport system, permease component
CbiQ and related transporters [Inorganic ion transport
and metabolism].
Length = 252
Score = 29.3 bits (66), Expect = 2.8
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 143 FLVFIFLMRRVFFLFIVIFLLLILLFFFI 171
LV + + F L ++ FLLL LL
Sbjct: 50 LLVVLAKIPLKFLLLLLGFLLLGLLLIAF 78
>gnl|CDD|234534 TIGR04286, MSEP-CTERM, MSEP-CTERM protein. Members of this protein
family average over 900 residues in length and appear to
have multiple membrane-spanning helices in the
N-terminal half. The extreme C-terminal region consists
of a motif with consensus sequence MSEP, then a
transmembrane alpha helix, then a short region with
several basic residues. This region, hereby dubbed
MSEP-CTERM, resembles other putative sorting signals
associated with the archaeosortase/exosortase protein
family (see TIGR04178). Genes for all members of this
family are found next to a gene for exosortase K.
Length = 920
Score = 29.3 bits (66), Expect = 3.0
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 139 IRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKNDNKSQM 185
I +F+ L+ FL LIL F +I + +R + ++
Sbjct: 165 INGSFIGLNHLIMIFAIGATASFLFLILRFLYILITRRNLSFKNPEL 211
>gnl|CDD|165187 PHA02845, PHA02845, hypothetical protein; Provisional.
Length = 91
Score = 27.4 bits (61), Expect = 3.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 128 IRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFF 169
IR+ I +I + FL+ L R F LFI+ L + F
Sbjct: 42 IRLTIDLILLIIVMIFLMIRILKRNYFALFIIFLFYLFISFR 83
Score = 27.0 bits (60), Expect = 4.2
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 14/63 (22%)
Query: 122 SIVHTDIRVVIKSHSWVIR----------VNFLVFIFLM----RRVFFLFIVIFLLLILL 167
SI+ I + +H ++ R + +V IFLM +R +F +IFL + +
Sbjct: 21 SILDCIINEIENNHHYLFRPFIRLTIDLILLIIVMIFLMIRILKRNYFALFIIFLFYLFI 80
Query: 168 FFF 170
F
Sbjct: 81 SFR 83
>gnl|CDD|233109 TIGR00739, yajC, preprotein translocase, YajC subunit. While this
protein is part of the preprotein translocase in
Escherichia coli, it is not essential for viability or
protein secretion. The N-terminus region contains a
predicted membrane-spanning region followed by a region
consisting almost entirely of residues with charged
(acidic, basic, or zwitterionic) side chains. This small
protein is about 100 residues in length, and is
restricted to bacteria; however, this protein is absent
from some lineages, including spirochetes and
Mycoplasmas [Protein fate, Protein and peptide secretion
and trafficking].
Length = 84
Score = 27.3 bits (61), Expect = 3.1
Identities = 8/37 (21%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 154 FFLFIVIFLLLILLFFFIGLE-QRRKNDNKSQMGSGL 189
F ++ +L+ L+F+F+ + QR++ ++ L
Sbjct: 2 FLTTLLPLVLIFLIFYFLIIRPQRKRRKAHKKLIESL 38
>gnl|CDD|221116 pfam11457, DUF3021, Protein of unknown function (DUF3021). This is
a bacterial family of uncharacterized proteins.
Length = 134
Score = 28.0 bits (63), Expect = 3.1
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 117 SSLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFL------MRRVFFLFIVIFLLL-ILLFF 169
+SL+ + H + + FL L LF +IF+L+ ++++
Sbjct: 58 ASLIFETERWSLLKQTLIHFILTLLTFLPLAILNGWFPLSGIALLLFTIIFILIYLIIWL 117
Query: 170 FIGLEQRRK 178
+ L ++
Sbjct: 118 ILYLRIKKD 126
>gnl|CDD|224096 COG1175, UgpA, ABC-type sugar transport systems, permease
components [Carbohydrate transport and metabolism].
Length = 295
Score = 29.1 bits (66), Expect = 3.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 147 IFLMRRVFFLFIVIFLLLILLFFFIGL 173
R + +L + LLL+L+FF L
Sbjct: 5 RRSRRLLPYLLLAPALLLLLVFFLYPL 31
>gnl|CDD|220687 pfam10316, 7TM_GPCR_Srbc, Serpentine type 7TM GPCR chemoreceptor
Srbc. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srbc is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 272
Score = 29.0 bits (66), Expect = 3.3
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 142 NFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKND 180
+ + I + + F FL + LL ++++K D
Sbjct: 2 SLIAVIVTLIGILFSIFTCFLNIYLLKKIFYSKKKKKPD 40
>gnl|CDD|214789 smart00724, TLC, TRAM, LAG1 and CLN8 homology domains. Protein
domain with at least 5 transmembrane alpha-helices.
Lag1p and Lac1p are essential for acyl-CoA-dependent
ceramide synthesis, TRAM is a subunit of the translocon
and the CLN8 gene is mutated in Northern epilepsy
syndrome. The family may possess multiple functions such
as lipid trafficking, metabolism, or sensing. Trh
homologues possess additional homeobox domains.
Length = 205
Score = 28.4 bits (64), Expect = 3.5
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 133 KSHSWVIRVNFLVFI---FLMRRVFFLFIVIFL 162
+ S + VNF++F F+ R + F F+++ +
Sbjct: 126 RKKSLLYDVNFVLFAVVFFVFRLILFPFLILTV 158
>gnl|CDD|215958 pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquinone
oxidoreductase, chain 3.
Length = 102
Score = 27.5 bits (62), Expect = 3.5
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 9/40 (22%)
Query: 143 FLVF----IFLM-----RRVFFLFIVIFLLLILLFFFIGL 173
FL+F I L+ + + L LL +GL
Sbjct: 52 FLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLILLLGL 91
>gnl|CDD|214456 MTH00203, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 112
Score = 27.6 bits (62), Expect = 3.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 153 VFFLFIVIFLLLILLFFFIGL 173
+ LF +I LLL L+ FI
Sbjct: 3 LIMLFFLIALLLSLILLFIAF 23
>gnl|CDD|221295 pfam11893, DUF3413, Domain of unknown function (DUF3413). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is about 250
amino acids in length. This domain is found associated
with pfam00884.
Length = 253
Score = 28.8 bits (65), Expect = 3.7
Identities = 10/28 (35%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 144 LVFIFLMRRVFFLFIVIF--LLLILLFF 169
L FI RR+ I L L LL
Sbjct: 76 LSFIIPPRRLLRGLAAIIATLGLTLLLI 103
>gnl|CDD|149223 pfam08019, DUF1705, Domain of unknown function (DUF1705). Some
members of this family are putative bacterial membrane
proteins. This domain is found immediately N terminal to
the sulfatase domain in many sulfatases.
Length = 156
Score = 28.2 bits (64), Expect = 3.7
Identities = 5/35 (14%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 137 WVIRVNFLVFI-FLMRRVFFLFIVIFLLLILLFFF 170
+++ + ++ L++R+ + + ++L++ F F
Sbjct: 84 LRVKIRYRPWLRELLQRLLSILASLLVILLIAFLF 118
>gnl|CDD|233511 TIGR01654, bact_immun_7tm, bacteriocin-associated integral membrane
(putative immunity) protein. This model represents a
family of integral membrane proteins, most of which are
about 650 residues in size and predicted to span the
membrane seven times. Nearly half of the members of this
family are found in association with a member of the
lactococcin 972 family of bacteriocins (TIGR01653).
Others may be associated with uncharacterized proteins
that may also act as bacteriocins. Although this protein
is suggested to be an immunity protein, and the
bacteriocin is suggested to be exported by a
Sec-dependent process, the role of this protein is
unclear [Cellular processes, Toxin production and
resistance].
Length = 679
Score = 28.9 bits (65), Expect = 3.7
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 133 KSHSWVIRVNFLVFIFLMRRVFF---------LFIVIFLLLILLFFFIGLEQRRKNDNKS 183
+++ + N V++F++ LF VIFLL ILL I L + K S
Sbjct: 617 RTYKQYLVSNLAVYVFILILALIFSHAFYILLLFAVIFLLEILLILGI-LSKLEKRFFVS 675
Query: 184 QM 185
+
Sbjct: 676 IL 677
>gnl|CDD|214457 MTH00205, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 448
Score = 28.8 bits (65), Expect = 3.9
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 137 WVIRVNFLV--FIFLMRRVF--FLFIVIFLLLILLFFFI 171
W+ + L +F + F VI LLLIL+ F
Sbjct: 68 WISLLMVLASYKVFKSNKNSKLFTVSVIMLLLILILSFS 106
>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is
a conserved membrane protein. The yfhO gene is
transcribed in Difco sporulation medium and the
transcription is affected by the YvrGHb two-component
system. Some members of this family have been annotated
as glycosyl transferases of the PMT family.
Length = 835
Score = 29.1 bits (66), Expect = 3.9
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 143 FLVFIFLMR----RVFFLFIVIFLLLILLFFF 170
L+ F + + LF ++ L LIL F+
Sbjct: 290 LLILYFFNKLIKLKEKLLFALLLLFLILSFYL 321
>gnl|CDD|215869 pfam00344, SecY, SecY translocase.
Length = 340
Score = 28.6 bits (65), Expect = 4.1
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 116 SSSLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFI 171
+SSL L+ T + + S + V+ L + + ++ I L++ +F+
Sbjct: 206 ASSL-LANPQTIAQF-LGSSFPLWPVSGLAYYLPIGSPVYILFYIVLIIFFSYFYT 259
>gnl|CDD|212036 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and
Na(+)/multivitamin (SMVT) cotransporters, and related
proteins; solute binding domain. NIS (product of the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. SMVT (product of the SLC5A6 gene)
transports biotin, pantothenic acid and lipoate. This
subfamily also includes SMCT1 and 2. SMCT1(the product
of the SLC5A8 gene) is a high-affinity transporter of
various monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. SMCT2 (product of the SLC5A12
gene) is a low-affinity transporter for short-chain
fatty acids, lactate, pyruvate, and nicotinate. This
subfamily belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 477
Score = 28.7 bits (65), Expect = 4.2
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 151 RRVFFLFIVIFLLLILLFFFIGL 173
++ + V + + LLF +GL
Sbjct: 266 QKNMYWNGVGLVPVNLLFLLLGL 288
>gnl|CDD|237811 PRK14767, PRK14767, lipoprotein signal peptidase; Provisional.
Length = 174
Score = 28.1 bits (63), Expect = 4.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 147 IFLMRRVFFLFIVIFLLLILLFFFIGLEQRRK 178
+ + VFFL I + +++I+ F F L +K
Sbjct: 62 MLSGKAVFFLVITVAVVIIMAFVFFKLPATKK 93
>gnl|CDD|237560 PRK13922, PRK13922, rod shape-determining protein MreC;
Provisional.
Length = 276
Score = 28.4 bits (64), Expect = 4.4
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 146 FIFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKNDNKSQMGSGL 189
F + + L +++ LLL L + + +G +
Sbjct: 4 FSRGKKLLLLLLLILLLLLALALLLADRRLGSLSPVRQVVGDVV 47
Score = 27.6 bits (62), Expect = 9.2
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 144 LVFIFLMRRVFFLFIVIFLLLILLFFF 170
L + L I++ LL + L
Sbjct: 3 LFSRGKKLLLLLLLILLLLLALALLLA 29
>gnl|CDD|223742 COG0670, COG0670, Integral membrane protein, interacts with FtsH
[General function prediction only].
Length = 233
Score = 28.4 bits (64), Expect = 4.5
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 130 VVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKN 179
+V + + L + L+ F++I L +FF +
Sbjct: 36 LVTAVGAALA-AYLLFNLGLLSLSPPGFVLIIAGLAGVFFLSRKINKSSP 84
>gnl|CDD|212037 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransporters: PanF of
Escherichia coli and related proteins; solute binding
domain. PanF catalyzes the Na+-coupled uptake of
extracellular pantothenate for coenzyme A biosynthesis
in cells. This subfamily belongs to the solute carrier 5
(SLC5) transporter family.
Length = 472
Score = 28.7 bits (65), Expect = 4.5
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 141 VNFLVFIFLMRRVFFLF-IVIFLLLILLFFFIG 172
V++++ +L ++ L IV LLL L+ F I
Sbjct: 432 VSYILITYLKIKILGLHPIVPSLLLSLIAFIIV 464
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 28.7 bits (64), Expect = 4.5
Identities = 22/117 (18%), Positives = 33/117 (28%), Gaps = 4/117 (3%)
Query: 191 QSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMG 250
Q + + G Q R + QS+ + + G R+ + G
Sbjct: 461 QPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQRQSQGPNQGPRGQGGYNLRPRTYQPQRYG 520
Query: 251 SGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRKS 307
G Q RR Q R + Q + QSR G Q+R
Sbjct: 521 GG--QGRR--WNPNPYRQSGQGRSQQQQPQPEARGNQSRTPGPGRGQGGRGNQNRNQ 573
>gnl|CDD|217379 pfam03125, Sre, C. elegans Sre G protein-coupled chemoreceptor.
Caenorhabditis elegans Sre proteins are candidate
chemosensory receptors. There are four main recognised
groups of such receptors: Odr-10, Sra, Sro, and Srg. Sre
(this family), Sra pfam02117 and Srb pfam02175 comprise
the Sra group. All of the above receptors are thought to
be G protein-coupled seven transmembrane domain
proteins. The existence of several different
chemosensory receptors underlies the fact that in spite
of having only 20-30 chemosensory neurones, C. elegans
detects hundreds of different chemicals, with the
ability to discern individual chemicals among
combinations.
Length = 363
Score = 28.4 bits (64), Expect = 5.0
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 118 SLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVF---FLFIVIFLLLILLFFFIG 172
L+LSI ++ V +++ L R+F + I L I IG
Sbjct: 25 QLLLSIFELLFYILC-----AYIVFVSLYVILKIRLFHKNLTILFIPLFGIWFELIIG 77
>gnl|CDD|227725 COG5438, COG5438, Predicted multitransmembrane protein [Function
unknown].
Length = 385
Score = 28.5 bits (64), Expect = 5.1
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 144 LVFIFLM--RRVFFLFIVIFLLLILLFFFIGLEQRRKNDNKSQMGSGLEQSRRSDNKSQ 200
L I L+ + F +F+VIF L++L+ F N K ++ S S++KS
Sbjct: 6 LKNIPLVKEKLFFLIFLVIFTLVLLVKFIAESA---YNAPKGEITDVKIVSNNSEDKSS 61
>gnl|CDD|233317 TIGR01218, Gpos_tandem_5TM, tandem five-transmembrane protein.
Members of this family of proteins, with average length
of 210, have no invariant residues but five predicted
transmembrane segments. Strangely, most members occur in
groups of consecutive paralogous genes. A striking
example is a set of eleven encoded consecutively,
head-to-tail, in Staphylococcus aureus strain COL.
Length = 208
Score = 28.0 bits (63), Expect = 5.7
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 126 TDIRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLE 174
++ I+ S+ R+ F++F+++ FFL + IFL LF G E
Sbjct: 133 KRYKIKIRPTSFKYRI-FILFLYI----FFLGLSIFL--FYLFINNGGE 174
Score = 27.6 bits (62), Expect = 7.4
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 18/57 (31%)
Query: 143 FLVFIFLMRR--------------VFFLFIVIFLLLILLFFFIGLEQRRKNDNKSQM 185
V ++ + R LF++ LL+ LL +I +KN K
Sbjct: 74 ISVLLYRLLRPLFDYFDISQSIFIKIILFLISILLVYLLRIYI----NKKNKKKLYN 126
Score = 27.2 bits (61), Expect = 9.6
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 11/41 (26%)
Query: 139 IRVNFLVFIFLMRRVFFLF--------IVIFLLLILLFFFI 171
+ + FL + F+LF I++ +I LFFF+
Sbjct: 153 LYIFFLGLSIFL---FYLFINNGGENIILVINGIIFLFFFL 190
>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane
protein. Models TIGR03110, TIGR03111, and TIGR03112
describe a three-gene system found in several
Gram-positive bacteria, where TIGR03110 (XrtG) is
distantly related to a putative transpeptidase,
exosortase (TIGR02602). This model describes a small
clade that correlates by both gene clustering and
phyletic pattern, although imperfectly, to the three
gene system. Both this narrow clade, and the larger set
of full-length homologous integral membrane proteins,
have an especially well-conserved region near the
C-terminus with an invariant tyrosine. The function is
unknown.
Length = 483
Score = 28.4 bits (64), Expect = 5.7
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 103 QKWMWHKRDHSSSSSSLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFL 162
+W L++ I+ ++I + W F+ + V + I I L
Sbjct: 21 NLNLWGISTTLIVL--LLILII---FLILIIIYFWKKVKKRYRFLMRHKGVTIIVIFILL 75
Query: 163 LLILLFFFIGLE 174
L++ L L
Sbjct: 76 LILQLILVTALH 87
>gnl|CDD|219625 pfam07895, DUF1673, Protein of unknown function (DUF1673). This
family contains hypothetical proteins of unknown
function expressed by two archaeal species.
Length = 204
Score = 28.1 bits (63), Expect = 5.9
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 132 IKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLI-LLFFFIGL 173
+K+ W+ + + + + + F+VI L I LLF GL
Sbjct: 46 LKNPGWLRKRSNRLLLASIFLTLAYFLVISQLGINLLFLLAGL 88
>gnl|CDD|222242 pfam13584, BatD, Oxygen tolerance. This family of proteins carries
up to three membrane spanning regions and is involved in
tolerance to oxygen in in Bacteroides spp.
Length = 488
Score = 28.4 bits (64), Expect = 6.0
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 148 FLMRRVFFLFIVIFLLLILLFFFIGLEQRRKNDN 181
F +F+L +++ LLL +L + ++R +N +
Sbjct: 425 FFGSTLFWLLLLLPLLLFVLLLILYRKRRARNAD 458
>gnl|CDD|177157 MTH00094, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 403
Score = 28.3 bits (64), Expect = 6.2
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 136 SWVIRVNFLVFIFLMRRVFFLFIVIFL--LLILLFFFIG 172
S N F F+ FF F+V F L +++ F+G
Sbjct: 338 SNSFMKNKFSFFFI----FFYFLVSFYYSLFLIVSSFMG 372
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed.
Length = 426
Score = 28.2 bits (64), Expect = 6.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 153 VFFLFIVIFLLLILLFFFIGLEQRR 177
VF L IV+FL +I F+ QRR
Sbjct: 215 VFLLLIVLFLAVIAFVVFVEQAQRR 239
>gnl|CDD|226638 COG4168, SapB, ABC-type antimicrobial peptide transport system,
permease component [Defense mechanisms].
Length = 321
Score = 28.2 bits (63), Expect = 6.5
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 146 FIFLMRRVFFLFIVIFLLLILLF 168
IF +RR+ L + + +L ++ F
Sbjct: 2 IIFTLRRILLLILTLLILTLVGF 24
>gnl|CDD|220958 pfam11055, Gsf2, Glucose signalling factor 2. Gsf2 is localised to
the ER and functions to promote the secretion of certain
hexose transporters.
Length = 376
Score = 28.1 bits (63), Expect = 6.5
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 153 VFFLFIVIFLLLILLFFFIGL 173
+FF+F ++ +L I LF + G+
Sbjct: 180 LFFVFHIVKILFIFLFLYSGM 200
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily
[General function prediction only].
Length = 727
Score = 28.0 bits (63), Expect = 6.9
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 148 FLMRRVFFLFIVIFLLLILLFFFIG 172
F++RR + ++ LL IL F
Sbjct: 8 FIIRRRKSIILIFLLLTILSAFGAQ 32
>gnl|CDD|177159 MTH00097, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 121
Score = 26.8 bits (60), Expect = 7.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 154 FFLFIVIFLLLILLFF 169
F IV F+L +LLFF
Sbjct: 89 IFWLIVFFILFVLLFF 104
>gnl|CDD|216994 pfam02361, CbiQ, Cobalt transport protein. This family consists of
various cobalt transport proteins Most of which are
found in Cobalamin (Vitamin B12) biosynthesis operons.
In Salmonella the cbiN cbiQ (product CbiQ in this
family) and cbiO are likely to form an active cobalt
transport system.
Length = 217
Score = 27.7 bits (62), Expect = 7.7
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 138 VIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGL 173
+I + L+ L+ + F+ FL L LLF +G
Sbjct: 34 LIIIALLLLTLLLVGLP-RFLARFLRLPLLFPLLGF 68
>gnl|CDD|177203 MTH00145, CYTB, cytochrome b; Provisional.
Length = 379
Score = 27.9 bits (63), Expect = 8.4
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 146 FIFLMRRVFFLFIVIFLLL 164
F L + +F++F+ F +L
Sbjct: 318 FYPLNQVLFWIFVGNFFIL 336
>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein. The
Ligand-gated Ion Channel (LIC) Family of
Neurotransmitter Receptors TC 1.A.9)Members of the LIC
family of ionotropic neurotransmitter receptors are
found only in vertebrate and invertebrate animals. They
exhibit receptor specificity for (1)acetylcholine, (2)
serotonin, (3) glycine, (4) glutamate and (5)
g-aminobutyric acid (GABA). All of these receptor
channels are probably hetero- orhomopentameric. The best
characterized are the nicotinic acetyl-choline receptors
which are pentameric channels of a2bgd subunit
composition. All subunits arehomologous. The three
dimensional structures of the protein complex in both
the open and closed configurations have been solved at
0.9 nm resolution.The channel protein complexes of the
LIC family preferentially transport cations or anions
depending on the channel (e.g., the acetylcholine
receptors are cationselective while glycine receptors
are anion selective) [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 459
Score = 27.8 bits (62), Expect = 8.4
Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 8/116 (6%)
Query: 153 VFFLFIVIFLLLILLFFFIGLEQRRKNDNKSQMGSGLEQSRRSDNKSQMGSG-----LEQ 207
V+F + F+ L LL K+ + + LE+ K + G L+
Sbjct: 305 VYFAVCMAFVFLALLETAFVNYVHHKDPAQGKRHLLLERCAWRLCKQEPGEDYRRPALDH 364
Query: 208 SRRSD---NKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSDNKSQMGSGLEQSRRSD 260
+ S G GLE E + + R+ D
Sbjct: 365 ASLSSVEMRAKDGGRGLESPTERQRLLHSPPPAEGDLDLAGILEEVRIAHRFRKRD 420
>gnl|CDD|233780 TIGR02210, rodA_shape, rod shape-determining protein RodA. This
protein is a member of the FtsW/RodA/SpoVE family
(pfam01098). It is found only in species with rod (or
spiral) shapes. In many species, mutation of rodA has
been shown to correlate with loss of the normal rod
shape. Note that RodA homologs are found, scoring below
the cutoffs for this model, in a number of both
rod-shaped and coccoid bacteria, including four proteins
in Bacillus anthracis, for example [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan, Cellular processes, Cell division].
Length = 352
Score = 27.9 bits (63), Expect = 8.7
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 11/43 (25%)
Query: 141 VNFLVFIFLM-----------RRVFFLFIVIFLLLILLFFFIG 172
V F + + LM RR+ + V+ LLL++ G
Sbjct: 36 VWFGIGLVLMIIVALIDYRFLRRLAYPLYVLGLLLLVAVLLFG 78
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 27.8 bits (62), Expect = 8.7
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 112 HSSSSSSLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFI 171
+ S ++S + D+ + + L+ L I +LL L + +
Sbjct: 103 FDKAKSGDLISRLTNDV--------EAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRL 154
Query: 172 GL 173
L
Sbjct: 155 AL 156
>gnl|CDD|234609 PRK00068, PRK00068, hypothetical protein; Validated.
Length = 970
Score = 27.6 bits (62), Expect = 9.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 149 LMRRVFFLFIVIFLLLILLFFF 170
LMRR L I+ ++++LL F
Sbjct: 10 LMRRSKILIIIALIIILLLLFG 31
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.125 0.341
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,605,800
Number of extensions: 1339436
Number of successful extensions: 4137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3848
Number of HSP's successfully gapped: 268
Length of query: 319
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 222
Effective length of database: 6,635,264
Effective search space: 1473028608
Effective search space used: 1473028608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (26.4 bits)