RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12992
         (319 letters)



>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system
           permease protein WtpB (ModB) {Archaeoglobus fulgidus
           [TaxId: 2234]}
          Length = 252

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 150 MRRVFFLFIVIFLLLILLFFFI 171
           MR +F   + +   +ILLF  +
Sbjct: 1   MRLLFSALLALLSSIILLFVLL 22


>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 33.1 bits (74), Expect = 0.038
 Identities = 9/44 (20%), Positives = 21/44 (47%)

Query: 141 VNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLEQRRKNDNKSQ 184
           V + V  F     F + I   +L ++L   + + ++R+++   Q
Sbjct: 400 VGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQ 443


>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter,
           permease protein {Methanosarcina acetivorans [TaxId:
           2214]}
          Length = 248

 Score = 32.2 bits (72), Expect = 0.065
 Identities = 6/31 (19%), Positives = 10/31 (32%)

Query: 144 LVFIFLMRRVFFLFIVIFLLLILLFFFIGLE 174
            VF FL+  +F    +    +I         
Sbjct: 4   FVFSFLLLVLFLFIFLTLSNMIFEQITEDFS 34


>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit
           II {Escherichia coli [TaxId: 562]}
          Length = 91

 Score = 29.3 bits (66), Expect = 0.15
 Identities = 7/37 (18%), Positives = 15/37 (40%)

Query: 149 LMRRVFFLFIVIFLLLILLFFFIGLEQRRKNDNKSQM 185
           L+   F L +++ +  IL+      + R  N +    
Sbjct: 17  LILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYS 53


>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
           kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
           188]}
          Length = 116

 Score = 29.6 bits (66), Expect = 0.21
 Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 128 IRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFI 171
            R+ ++   W+    +   + +   VF   I    L+    F +
Sbjct: 2   TRLGLEKRGWLDDH-YHDLLTVSWPVFITLITGLYLVTNALFAL 44


>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 514

 Score = 29.7 bits (67), Expect = 0.50
 Identities = 15/83 (18%), Positives = 24/83 (28%), Gaps = 25/83 (30%)

Query: 133 KSHSWVIRVNFLVFIFLM---------RRVF-----FLFI--------VIFLLLILLFFF 170
           K H  ++ V   +  F           RR       +            I L  ++L  F
Sbjct: 411 KIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVF 470

Query: 171 IGLE---QRRKNDNKSQMGSGLE 190
           I  E    +R+        + LE
Sbjct: 471 IIWEAFASKREVLTVDLTTTNLE 493


>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
           Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 116

 Score = 28.0 bits (62), Expect = 0.61
 Identities = 4/29 (13%), Positives = 12/29 (41%), Gaps = 3/29 (10%)

Query: 146 FIFLMR---RVFFLFIVIFLLLILLFFFI 171
           + + ++    VFF  +    ++    F +
Sbjct: 17  YYWALKVSWPVFFASLAALFVVNNTLFAL 45


>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex
           cytochrome b subunit, FrdC {Wolinella succinogenes
           [TaxId: 844]}
          Length = 254

 Score = 28.4 bits (63), Expect = 1.0
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 8/57 (14%)

Query: 118 SLVLSIVHTDIRVVIKSHSWVIRVNFLVFIFLMRRVFFLFIVIFLLLILLFFFIGLE 174
            L +     D     K+ + + ++  L+  F         IV+ LL    +   GLE
Sbjct: 189 RLAVKWGWFDGETPDKTRANLKKLKTLMSAF--------LIVLGLLTFGAYVKKGLE 237


>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase
           subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 538

 Score = 27.1 bits (60), Expect = 3.2
 Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 28/86 (32%)

Query: 133 KSHSWVIRVNFLVFIFLM---------RRVF--------FLFI-----VIFLLLILLFFF 170
           K H W++ V   +  F           RR          + F+      +     L F  
Sbjct: 441 KLHFWMMFVGANLTFFPQHFLGRQGMPRRYIDYPEAFATWNFVSSLGAFLSFASFLFFLG 500

Query: 171 IGLEQRRK------NDNKSQMGSGLE 190
           +      +      N+  ++    LE
Sbjct: 501 VIFYTLTRGARVTANNYWNEHADTLE 526


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.125    0.341 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 962,656
Number of extensions: 38382
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 10
Length of query: 319
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,240,546
Effective search space: 290287764
Effective search space used: 290287764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.4 bits)