BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12993
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EP7|A Chain A, Functional Implications From The Cid1 Poly(U) Polymerase
Crystal Structure
pdb|4EP7|B Chain B, Functional Implications From The Cid1 Poly(U) Polymerase
Crystal Structure
Length = 340
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 5/106 (4%)
Query: 123 FKKADLIHAKVPILKFQDSS-----FKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLV 177
F+ L A++PI+K + + D+ NN + + NT LL Y ++D R++P+V
Sbjct: 93 FEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMV 152
Query: 178 LLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLV 223
LLVK WA+ IN T+SSY + LMV+++L PPV PNL+
Sbjct: 153 LLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLL 198
>pdb|4FHX|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal
The Mechanism For Utp Selectivity - H336n Mutant Bound
To Mgatp
Length = 349
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 5/106 (4%)
Query: 123 FKKADLIHAKVPILKFQDSS-----FKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLV 177
F+ L A++PI+K + + D+ NN + + NT LL Y ++D R++P+V
Sbjct: 102 FEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMV 161
Query: 178 LLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLV 223
LLVK WA+ IN T+SSY + LMV+++L PPV PNL+
Sbjct: 162 LLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLL 207
>pdb|4FH3|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal
The Mechanism For Utp Selectivity
pdb|4FH5|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal
The Mechanism For Utp Selectivity - Mgutp Bound
pdb|4FHP|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal
The Mechanism For Utp Selectivity - Cautp Bound
pdb|4FHV|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal
The Mechanism For Utp Selectivity - Mgctp Bound
pdb|4FHW|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal
The Mechanism For Utp Selectivity - Mggtp Bound
pdb|4FHY|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal
The Mechanism For Utp Selectivity - Mg 3'-Datp Bound
Length = 349
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 5/106 (4%)
Query: 123 FKKADLIHAKVPILKFQDSS-----FKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLV 177
F+ L A++PI+K + + D+ NN + + NT LL Y ++D R++P+V
Sbjct: 102 FEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMV 161
Query: 178 LLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLV 223
LLVK WA+ IN T+SSY + LMV+++L PPV PNL+
Sbjct: 162 LLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLL 207
>pdb|4E7X|A Chain A, Structural Basis For The Activity Of A Cytoplasmic Rna
Terminal U- Transferase
pdb|4E7X|B Chain B, Structural Basis For The Activity Of A Cytoplasmic Rna
Terminal U- Transferase
pdb|4E7X|C Chain C, Structural Basis For The Activity Of A Cytoplasmic Rna
Terminal U- Transferase
pdb|4E7X|D Chain D, Structural Basis For The Activity Of A Cytoplasmic Rna
Terminal U- Transferase
pdb|4E80|A Chain A, Structural Basis For The Activity Of A Cytoplasmic Rna
Terminal U- Transferase
pdb|4E80|B Chain B, Structural Basis For The Activity Of A Cytoplasmic Rna
Terminal U- Transferase
pdb|4E80|C Chain C, Structural Basis For The Activity Of A Cytoplasmic Rna
Terminal U- Transferase
pdb|4E80|D Chain D, Structural Basis For The Activity Of A Cytoplasmic Rna
Terminal U- Transferase
pdb|4E8F|A Chain A, Structural Basis For The Activity Of A Cytoplasmic Rna
Terminal U- Transferase
pdb|4E8F|B Chain B, Structural Basis For The Activity Of A Cytoplasmic Rna
Terminal U- Transferase
Length = 405
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 5/106 (4%)
Query: 123 FKKADLIHAKVPILKFQDSS-----FKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLV 177
F+ L A++PI+K + + D+ NN + + NT LL Y ++D R++P+V
Sbjct: 130 FEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMV 189
Query: 178 LLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLV 223
LLVK WA+ IN T+SSY + LMV+++L PPV PNL+
Sbjct: 190 LLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLL 235
>pdb|3PQ1|A Chain A, Crystal Structure Of Human Mitochondrial Poly(A)
Polymerase (Papd1)
pdb|3PQ1|B Chain B, Crystal Structure Of Human Mitochondrial Poly(A)
Polymerase (Papd1)
Length = 464
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 128 LIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAH 187
+++A+ P+++F + + L NN + + ++ LLY Y +D R+R LV V+ WA+AH
Sbjct: 253 ILNARCPLVRFSHQASGFQCALTTNNRIALTSSELLYIYGALDSRVRALVFSVRCWARAH 312
Query: 188 NINDA-KNMTISSYSFTLMVIHFLQCGTSPPVLPNL 222
++ + I+++S T VI FLQ SPP+LP L
Sbjct: 313 SLTSSIPGAWITNFSLTXXVIFFLQ-RRSPPILPTL 347
>pdb|3HJ1|A Chain A, Minor Editosome-Associated Tutase 1 With Bound Utp
pdb|3HJ1|B Chain B, Minor Editosome-Associated Tutase 1 With Bound Utp
Length = 387
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 129 IHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQM--DWRIRPLVLLVKLWAQA 186
I A++P+++F D + D++ N+ GV N+ +L Q+ D+ + LVK W +A
Sbjct: 113 IRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDF-YGAYIHLVKAWGKA 171
Query: 187 HNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLVAQY 226
+ + T +S++ T M + LQ PV ++
Sbjct: 172 REVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEF 211
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 19 AHVRLFVVGSTMTGFGLDSSDVDMCLGIRPY-------EFDRGQAIRVLCVLETSDVDMC 71
AHV LF GS ++GF SD D+ L R + E Q + + M
Sbjct: 49 AHVELF--GSHVSGFCTPHSDADISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEASAMG 106
Query: 72 LEIFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIF 123
+E + I A++P+++F D + D++ N+ GV N+ +L C +++F
Sbjct: 107 MEDVR---YIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKIL-CAIRQVF 154
>pdb|3HIY|A Chain A, Minor Editosome-Associated Tutase 1 With Bound Utp And Mg
pdb|3HIY|B Chain B, Minor Editosome-Associated Tutase 1 With Bound Utp And Mg
pdb|3HJ4|A Chain A, Minor Editosome-Associated Tutase 1
pdb|3HJ4|B Chain B, Minor Editosome-Associated Tutase 1
Length = 384
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 129 IHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQM--DWRIRPLVLLVKLWAQA 186
I A++P+++F D + D++ N+ GV N+ +L Q+ D+ + LVK W +A
Sbjct: 110 IRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDF-YGAYIHLVKAWGKA 168
Query: 187 HNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLVAQY 226
+ + T +S++ T + LQ PV ++
Sbjct: 169 REVIAPERSTFNSFTVTTXALXVLQELGLLPVFSKPTGEF 208
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 19 AHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKA 78
AHV LF GS ++GF SD D+ L R + ++ ++ + K+A
Sbjct: 46 AHVELF--GSHVSGFCTPHSDADISLTYRNF----SPWLQGXERVDEQNNKRXTRFGKEA 99
Query: 79 D--------LIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIF 123
I A++P+++F D + D++ N+ GV N+ +L C +++F
Sbjct: 100 SAXGXEDVRYIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKIL-CAIRQVF 151
>pdb|2IKF|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Utp
pdb|2IKF|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Utp
pdb|2NOM|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Dutp
pdb|2NOM|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Dutp
pdb|2Q0C|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Ctp
pdb|2Q0C|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Ctp
pdb|2Q0D|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Atp
pdb|2Q0D|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Atp
pdb|2Q0E|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Gtp
pdb|2Q0E|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Gtp
pdb|2Q0F|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Utp And Ump
pdb|2Q0F|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Utp And Ump
pdb|2Q0G|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Upu
pdb|2Q0G|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Upu
Length = 353
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 145 LEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAK-NMTISSYSFT 203
++ D+ GVRN+ LL Y + + R L + +K W++ +N + +I+SY F
Sbjct: 153 VDFDITAYRRNGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASVIGGSITSYGFN 212
Query: 204 LMVIHFL 210
LMV+++L
Sbjct: 213 LMVVYYL 219
>pdb|3NYB|A Chain A, Structure And Function Of The Polymerase Core Of Tramp, A
Rna Surveillance Complex
Length = 323
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 100 DLNC---NNVVGVRNTHLLYCYAQKIFKK------ADLIHAKVPILKFQDSSFKLEVDLN 150
D++C + + G + + LY A + KK + A+VPI+KF + + + ++
Sbjct: 78 DIDCVVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVS 137
Query: 151 CNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSYSFTLMVIHFL 210
G+ L+ + +R LVL+VK + A +N+ + +S +V FL
Sbjct: 138 FERTNGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFL 197
Query: 211 Q 211
Sbjct: 198 H 198
>pdb|2B51|A Chain A, Structural Basis For Utp Specificity Of Rna Editing
Tutases From Trypanosoma Brucei
pdb|2B56|A Chain A, Structural Basis For Utp Specificity Of Rna Editing
Tutases From Trypanosoma Brucei
Length = 468
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 156 GVRNTHLLYCYAQMD-WRIRPLVLLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQCGT 214
GV+N++L+ Y R + VK W +A N+ ++SY+ T+M I++L
Sbjct: 255 GVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTR 314
Query: 215 S-----PPVLPNL--VAQYPTKFSPNSNIDNIQEGK 243
P LP+ + +YP FSP + D + G+
Sbjct: 315 QVLWVDPWSLPHPAHLPRYP-DFSPLYDCDPTELGR 349
>pdb|2B4V|A Chain A, Structural Basis For Utp Specificity Of Rna Editing
Tutases From Trypanosoma Brucei
Length = 468
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 156 GVRNTHLLYCYAQMD-WRIRPLVLLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQCGT 214
GV+N++L+ Y R VK W +A N+ ++SY+ T+ I++L
Sbjct: 255 GVKNSYLIRHYLHNGPVAARHTAXAVKAWGKATNVGAGSGAXLTSYAVTVXFIYYLLVTR 314
Query: 215 S-----PPVLPNL--VAQYPTKFSPNSNIDNIQEGK 243
P LP+ + +YP FSP + D + G+
Sbjct: 315 QVLWVDPWSLPHPAHLPRYP-DFSPLYDCDPTELGR 349
>pdb|1FRN|A Chain A, The Involvement Of Ser96 In The Catalytic Mechanism Of
Ferredoxin-Nadp+ Reductase: Structure-Function
Relationship As Studied By Site-Directed Mutagenesis And
X- Ray Crystallography
Length = 314
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 18 PAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLC 61
P +RL+V+ S+ G D+ V +C+ Y D G+ I+ +C
Sbjct: 89 PHKLRLYVIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVC 132
>pdb|1SM4|A Chain A, Crystal Structure Analysis Of The Ferredoxin-Nadp+
Reductase From Paprika
pdb|1SM4|B Chain B, Crystal Structure Analysis Of The Ferredoxin-Nadp+
Reductase From Paprika
Length = 296
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 18 PAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLC 61
P +RL+ + S+ G DS V +C+ Y D+G+ ++ +C
Sbjct: 71 PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDKGEEVKGVC 114
>pdb|3VO1|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Ii
pdb|3VO1|B Chain B, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Ii
Length = 314
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 18 PAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLC 61
P +RL+ + S+ G DS V +C+ Y D+G+ ++ +C
Sbjct: 89 PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEVVKGVC 132
>pdb|1GAQ|A Chain A, Crystal Structure Of The Complex Between Ferredoxin And
Ferredoxin-Nadp+ Reductase
pdb|1GAQ|C Chain C, Crystal Structure Of The Complex Between Ferredoxin And
Ferredoxin-Nadp+ Reductase
pdb|1GAW|A Chain A, Crystal Structure Analysis Of The Ferredoxin-Nadp+
Reductase From Maize Leaf
pdb|1GAW|B Chain B, Crystal Structure Analysis Of The Ferredoxin-Nadp+
Reductase From Maize Leaf
Length = 314
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 18 PAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLC 61
P VRL+ + S+ G DS V +C+ Y D G+ ++ +C
Sbjct: 89 PHKVRLYSIASSAIGDFGDSKTVSLCVKRLIYTNDAGEIVKGVC 132
>pdb|3VO2|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Iii
pdb|3VO2|B Chain B, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Iii
Length = 310
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 18 PAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLC 61
P +RL+ + S+ G DS V +C+ Y D+G+ ++ +C
Sbjct: 85 PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVC 128
>pdb|1QG0|A Chain A, Wild-type Pea Fnr
pdb|1QG0|B Chain B, Wild-type Pea Fnr
Length = 308
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 18 PAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLC 61
P +RL+ + S+ G DS V +C+ Y D G+ ++ +C
Sbjct: 83 PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVC 126
>pdb|4AF6|A Chain A, Pea Fnr L268v Mutant
pdb|4AF6|B Chain B, Pea Fnr L268v Mutant
Length = 308
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 18 PAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLC 61
P +RL+ + S+ G DS V +C+ Y D G+ ++ +C
Sbjct: 83 PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVC 126
>pdb|1QFY|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadp+
pdb|1QFY|B Chain B, Pea Fnr Y308s Mutant In Complex With Nadp+
pdb|1QFZ|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadph
pdb|1QFZ|B Chain B, Pea Fnr Y308s Mutant In Complex With Nadph
Length = 308
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 18 PAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLC 61
P +RL+ + S+ G DS V +C+ Y D G+ ++ +C
Sbjct: 83 PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVC 126
>pdb|1QGA|A Chain A, Pea Fnr Y308w Mutant In Complex With Nadp+
pdb|1QGA|B Chain B, Pea Fnr Y308w Mutant In Complex With Nadp+
Length = 308
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 18 PAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLC 61
P +RL+ + S+ G DS V +C+ Y D G+ ++ +C
Sbjct: 83 PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVC 126
>pdb|4AF7|A Chain A, Pea Fnr C266m Mutant
pdb|4AF7|B Chain B, Pea Fnr C266m Mutant
Length = 308
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 18 PAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLC 61
P +RL+ + S+ G DS V +C+ Y D G+ ++ +C
Sbjct: 83 PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVC 126
>pdb|3FUY|A Chain A, Structure From The Mobile Metagenome Of Cole Harbour
Salt Marsh: Integron Cassette Protein Hfx_cass1
pdb|3FUY|B Chain B, Structure From The Mobile Metagenome Of Cole Harbour
Salt Marsh: Integron Cassette Protein Hfx_cass1
pdb|3FUY|C Chain C, Structure From The Mobile Metagenome Of Cole Harbour
Salt Marsh: Integron Cassette Protein Hfx_cass1
Length = 179
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 13/62 (20%)
Query: 14 TLRDPAHVRLFVVGSTMTGFGLDSSDVDMCL----GIRPY--------EFD-RGQAIRVL 60
T+RD + + V+ TGF D D+D+CL G+R EF +G IR+
Sbjct: 36 TIRDFDNGQFAVLRIGRTGFPADKGDIDLCLDKXKGVRDAQQSIGDDTEFGFKGPHIRIR 95
Query: 61 CV 62
CV
Sbjct: 96 CV 97
>pdb|3MHP|A Chain A, Fnr-Recruitment To The Thylakoid
pdb|3MHP|B Chain B, Fnr-Recruitment To The Thylakoid
Length = 296
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 18 PAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLC 61
P +RL+ + S+ G DS V +C+ Y D G+ ++ +C
Sbjct: 70 PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVC 113
>pdb|1BX1|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312q
Length = 314
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 18 PAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLC 61
P +RL+ + S+ G D+ V +C+ Y D G+ I+ +C
Sbjct: 89 PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVC 132
>pdb|1FNB|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase
At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'-
Phospho-5'-Amp Bound States
pdb|1FNC|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase
At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'-
Phospho-5'-Amp Bound States
pdb|1FND|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase
At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'-
Phospho-5'-Amp Bound States
Length = 314
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 18 PAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLC 61
P +RL+ + S+ G D+ V +C+ Y D G+ I+ +C
Sbjct: 89 PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVC 132
>pdb|1BX0|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312l
Length = 314
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 18 PAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLC 61
P +RL+ + S+ G D+ V +C+ Y D G+ I+ +C
Sbjct: 89 PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVC 132
>pdb|1FRQ|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312a
Length = 314
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 18 PAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLC 61
P +RL+ + S+ G D+ V +C+ Y D G+ I+ +C
Sbjct: 89 PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVC 132
>pdb|3LHA|A Chain A, Crystal Structure Of Mouse Vps26b(R240sG241AE242S) IN
SPACEGROUP P41 21 2
pdb|3LHA|B Chain B, Crystal Structure Of Mouse Vps26b(R240sG241AE242S) IN
SPACEGROUP P41 21 2
Length = 340
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 47 RPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLIHAKVPILKFQDSSFKLEVDL-NCNN 105
+PYE GQ +++ L + ++ K+ D++ + +SS K+EV + +C
Sbjct: 118 KPYESYTGQNVKLRYFLRATISRRLNDVVKEMDIVVHTLSTYPELNSSIKMEVGIEDC-- 175
Query: 106 VVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGV 157
H+ + Y + + D+I K+ L + +E+D+ G
Sbjct: 176 ------LHIEFEYNKSKYHLKDVIVGKIYFLSVEIKIKHMEIDIIKRETTGT 221
>pdb|3LH8|A Chain A, Crystal Structure Of Mouse Vps26b In Spacegroup P41 21 2
pdb|3LH8|B Chain B, Crystal Structure Of Mouse Vps26b In Spacegroup P41 21 2
pdb|3LH9|A Chain A, Crystal Structure Of Mouse Vps26b(L197sR199E) IN
SPACEGROUP P41 21 2
pdb|3LH9|B Chain B, Crystal Structure Of Mouse Vps26b(L197sR199E) IN
SPACEGROUP P41 21 2
Length = 340
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 47 RPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLIHAKVPILKFQDSSFKLEVDL-NCNN 105
+PYE GQ +++ L + ++ K+ D++ + +SS K+EV + +C
Sbjct: 118 KPYESYTGQNVKLRYFLRATISRRLNDVVKEMDIVVHTLSTYPELNSSIKMEVGIEDC-- 175
Query: 106 VVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGV 157
H+ + Y + + D+I K+ L + +E+D+ G
Sbjct: 176 ------LHIEFEYNKSKYHLKDVIVGKIYFLSVEIKIKHMEIDIIKRETTGT 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,878,668
Number of Sequences: 62578
Number of extensions: 270290
Number of successful extensions: 596
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 561
Number of HSP's gapped (non-prelim): 39
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)