BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12993
(243 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VD44|GLD2A_DROME Poly(A) RNA polymerase gld-2 homolog A OS=Drosophila melanogaster
GN=Gld2 PE=1 SV=3
Length = 1364
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 125/226 (55%), Gaps = 56/226 (24%)
Query: 6 AVEEYVRFTLRDPAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLET 65
A++ Y R+ L ++VGS+++ FG SD+D+C+ + C
Sbjct: 968 AMKNYPRYGL--------YLVGSSISYFGSKCSDMDICM--------------LACT--N 1003
Query: 66 SDVDMCLEIFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKK 125
++D +E + L V ++G N +F+
Sbjct: 1004 PNIDSRMEAV-------------------YHLHV---MKELLGRTN----------MFQD 1031
Query: 126 ADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQ 185
+LI A+VPIL+F D K+EVD+N NN VG+RNTHLLYCY+Q+DWR+RP+ L VK WAQ
Sbjct: 1032 FNLIEARVPILRFTDRCHKVEVDINFNNSVGIRNTHLLYCYSQLDWRVRPMALTVKQWAQ 1091
Query: 186 AHNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLVAQYPTKFS 231
HNIN+AKNMTISSYS LMVIHFLQ G SPPVLP L YP KF
Sbjct: 1092 YHNINNAKNMTISSYSLMLMVIHFLQVGASPPVLPCLHNLYPEKFG 1137
>sp|Q9VYS4|GLD2B_DROME Poly(A) RNA polymerase gld-2 homolog B OS=Drosophila melanogaster
GN=wisp PE=1 SV=1
Length = 1373
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/209 (43%), Positives = 121/209 (57%), Gaps = 35/209 (16%)
Query: 22 RLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLI 81
R+ +VGST+TGFG DSSD+DM C+L V + +
Sbjct: 1012 RICLVGSTITGFGTDSSDIDM------------------CLLPEQGVHPHQHQYHQH--- 1050
Query: 82 HAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDS 141
+ + + L N V +++T ++F+ +LI A+VPIL+F+D
Sbjct: 1051 -----HHFHNEKRTEALIILTLFNAV-LKDT--------EVFQDFNLIEARVPILRFKDI 1096
Query: 142 SFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSYS 201
S +EVDLN NN VG++NT+LL YAQMDWR RPLV++VKLWAQ H+INDAK MTISSYS
Sbjct: 1097 SNGIEVDLNFNNCVGIKNTYLLQLYAQMDWRTRPLVVIVKLWAQYHDINDAKRMTISSYS 1156
Query: 202 FTLMVIHFLQCGTSPPVLPNLVAQYPTKF 230
LMV+H+LQ P VLP L + YP KF
Sbjct: 1157 LVLMVLHYLQHACVPHVLPCLHSLYPEKF 1185
>sp|O17087|GLD2_CAEEL Poly(A) RNA polymerase gld-2 OS=Caenorhabditis elegans GN=gld-2
PE=1 SV=2
Length = 1113
Score = 132 bits (332), Expect = 2e-30, Method: Composition-based stats.
Identities = 82/211 (38%), Positives = 105/211 (49%), Gaps = 52/211 (24%)
Query: 23 LFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLIH 82
L+VVGS++ GFG +SSD+D+CL ++ D+D
Sbjct: 590 LYVVGSSLNGFGNNSSDMDLCL-----------------MITNKDLD------------- 619
Query: 83 AKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILK--FQD 140
N+ V V N L +K + LI AKVPIL+ F
Sbjct: 620 -------------------QKNDAVVVLNLILSTLQYEKFVESQKLILAKVPILRINFAA 660
Query: 141 SSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSY 200
+ VDLN NN V +RNTHLL Y+ DWR+RPLV +VK WA+ INDA + +SY
Sbjct: 661 PFDDITVDLNANNSVAIRNTHLLCYYSSYDWRVRPLVSVVKEWAKRKGINDANKSSFTSY 720
Query: 201 SFTLMVIHFLQCGTSPPVLPNLVAQYPTKFS 231
S LMVIHFLQCG + VLPNL YP +FS
Sbjct: 721 SLVLMVIHFLQCGPT-KVLPNLQQSYPNRFS 750
>sp|Q6PIY7|GLD2_HUMAN Poly(A) RNA polymerase GLD2 OS=Homo sapiens GN=PAPD4 PE=1 SV=1
Length = 484
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 110/211 (52%), Gaps = 44/211 (20%)
Query: 22 RLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLI 81
RLF+VGS++ GFG SSD D+CL ++ + ++ +K +
Sbjct: 196 RLFLVGSSLNGFGTRSSDGDLCLVVK-------------------EEPCFFQVNQKTEAR 236
Query: 82 HAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDS 141
H IL F C + G ++ LI AKVPI+KF+D
Sbjct: 237 H----ILTLVHKHF-------CTRLSGY-------------IERPQLIRAKVPIVKFRDK 272
Query: 142 SFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSYS 201
+E DLN NN+VG+RNT LL YA ++ R+RPLVL++K WA H INDA T+SSYS
Sbjct: 273 VSCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYS 332
Query: 202 FTLMVIHFLQCGTSPPVLPNLVAQYPTKFSP 232
LMV+H+LQ P+LP+L YP FSP
Sbjct: 333 LVLMVLHYLQTLPE-PILPSLQKIYPESFSP 362
>sp|Q2HJ44|GLD2_BOVIN Poly(A) RNA polymerase GLD2 OS=Bos taurus GN=PAPD4 PE=2 SV=1
Length = 484
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 112/212 (52%), Gaps = 44/212 (20%)
Query: 22 RLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLI 81
RLF+VGS++ GFG SSD D+CL ++ + ++ +K +
Sbjct: 196 RLFLVGSSLNGFGTRSSDGDLCLVVK-------------------EEPCFFQVNQKTEAR 236
Query: 82 HAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDS 141
H IL F C + G ++ LI AKVPI+KF+D
Sbjct: 237 H----ILTLVHKHF-------CTRLSGY-------------IERPQLIRAKVPIVKFRDK 272
Query: 142 SFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSYS 201
+E DLN NN+VG+RNT LL YA ++ R+RPLVL++K WA H+INDA T+SSYS
Sbjct: 273 VSCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHDINDASRGTLSSYS 332
Query: 202 FTLMVIHFLQCGTSPPVLPNLVAQYPTKFSPN 233
LMV+H+LQ P+LP++ YP FSP+
Sbjct: 333 LVLMVLHYLQTLPE-PILPSIQKIYPESFSPS 363
>sp|Q91YI6|GLD2_MOUSE Poly(A) RNA polymerase GLD2 OS=Mus musculus GN=Papd4 PE=1 SV=1
Length = 484
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 109/210 (51%), Gaps = 44/210 (20%)
Query: 22 RLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLI 81
RLF+VGS++ GFG SSD D+CL ++ + ++ +K +
Sbjct: 196 RLFLVGSSLNGFGARSSDGDLCLVVK-------------------EEPCFFQVNQKTEAR 236
Query: 82 HAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDS 141
H IL F C + G ++ LI AKVPI+KF+D
Sbjct: 237 H----ILTLVHKHF-------CTRLSGY-------------IERPQLIRAKVPIVKFRDK 272
Query: 142 SFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSYS 201
+E DLN NN VG+RNT LL YA ++ R+RPLVL++K WA H+INDA T+SSYS
Sbjct: 273 VSCVEFDLNVNNTVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHDINDASRGTLSSYS 332
Query: 202 FTLMVIHFLQCGTSPPVLPNLVAQYPTKFS 231
LMV+H+LQ P+LP+L YP FS
Sbjct: 333 LVLMVLHYLQTLPE-PILPSLQKIYPESFS 361
>sp|Q5U315|GLD2_RAT Poly(A) RNA polymerase GLD2 OS=Rattus norvegicus GN=Papd4 PE=2 SV=1
Length = 484
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 108/210 (51%), Gaps = 44/210 (20%)
Query: 22 RLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLI 81
RLF+VGS++ GFG SSD D+CL ++ + ++ +K +
Sbjct: 196 RLFLVGSSLNGFGARSSDGDLCLVVK-------------------EEPCFFQVNQKTEAR 236
Query: 82 HAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDS 141
H IL F C + G ++ LI AKVPI+KF+D
Sbjct: 237 H----ILTLVHKHF-------CTRLSGY-------------IERPQLIRAKVPIVKFRDK 272
Query: 142 SFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSYS 201
+E DLN NN VG+RNT LL YA ++ R+RPLVL++K WA H INDA T+SSYS
Sbjct: 273 VSCVEFDLNVNNTVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHEINDASRGTLSSYS 332
Query: 202 FTLMVIHFLQCGTSPPVLPNLVAQYPTKFS 231
LMV+H+LQ P+LP+L YP FS
Sbjct: 333 LVLMVLHYLQTLPE-PILPSLQKIYPESFS 361
>sp|Q6DFA8|GLD2B_XENLA Poly(A) RNA polymerase GLD2-B OS=Xenopus laevis GN=papd4-b PE=1
SV=1
Length = 509
Score = 128 bits (321), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 105/209 (50%), Gaps = 49/209 (23%)
Query: 22 RLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLI 81
RL++VGS++ GFG+ SSD D+CL VL+ ++ E L+
Sbjct: 223 RLYLVGSSLNGFGIRSSDADLCL-----------------VLKEEPMNQNTEARHILSLL 265
Query: 82 HAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDS 141
H T L Y ++ I AKVPI+KF+D
Sbjct: 266 HKHF-------------------------YTRLSY------IERPQFIRAKVPIVKFRDK 294
Query: 142 SFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSYS 201
E DLN NNVVG+RNT LL YA +D R+RPLVL++K WA H INDA T+SSY+
Sbjct: 295 VSGAEFDLNVNNVVGIRNTFLLRTYAYLDKRVRPLVLVIKKWANHHGINDASRGTLSSYT 354
Query: 202 FTLMVIHFLQCGTSPPVLPNLVAQYPTKF 230
LMV+H+LQ P+LP+L +YP F
Sbjct: 355 IVLMVLHYLQTLPE-PILPSLQKKYPECF 382
>sp|Q641A1|GLD2A_XENLA Poly(A) RNA polymerase GLD2-A OS=Xenopus laevis GN=papd4-a PE=1
SV=1
Length = 509
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 104/209 (49%), Gaps = 49/209 (23%)
Query: 22 RLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLI 81
RL++VGS++ GFG SD D+CL VL+ ++ E + L+
Sbjct: 223 RLYLVGSSLNGFGTRISDADLCL-----------------VLKEEPMNQHTEATQILGLL 265
Query: 82 HAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDS 141
H L Y I ++ I AKVPI+KF+D
Sbjct: 266 HK------------------------------LFYTRLSYI-ERLQFIRAKVPIVKFRDK 294
Query: 142 SFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSYS 201
E DLN NNVVG+RNT LL YA ++ R+RPLVL++K WA H INDA T+SSY+
Sbjct: 295 VSGAEFDLNVNNVVGIRNTFLLRTYAYLESRVRPLVLVIKKWANHHGINDASRGTLSSYT 354
Query: 202 FTLMVIHFLQCGTSPPVLPNLVAQYPTKF 230
LMV+H+LQ P+LP+L +YP F
Sbjct: 355 LVLMVLHYLQTLPE-PILPSLQKKYPECF 382
>sp|Q0VFA3|GLD2_XENTR Poly(A) RNA polymerase GLD2 OS=Xenopus tropicalis GN=papd4 PE=2
SV=1
Length = 528
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 104/209 (49%), Gaps = 49/209 (23%)
Query: 22 RLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLI 81
RL++VGS++ GFG SSD D+CL VL+ ++ E L+
Sbjct: 242 RLYLVGSSLNGFGTRSSDADLCL-----------------VLKDEPMNQHTEARHILSLL 284
Query: 82 HAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDS 141
H T L Y ++ I AKVPI+KF+D
Sbjct: 285 HKHF-------------------------YTRLSY------IERPQFIKAKVPIVKFRDK 313
Query: 142 SFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSYS 201
E DLN NNVVG+RNT LL YA ++ R+RPLVL++K+WA H +NDA T+SSY+
Sbjct: 314 VSGAEFDLNVNNVVGIRNTFLLRTYAYIENRVRPLVLVIKMWANYHGLNDASRGTLSSYT 373
Query: 202 FTLMVIHFLQCGTSPPVLPNLVAQYPTKF 230
LM +H+LQ P++P+L +YP F
Sbjct: 374 LVLMALHYLQTLPE-PIIPSLQKKYPECF 401
>sp|Q503I9|GLD2_DANRE Poly(A) RNA polymerase GLD2 OS=Danio rerio GN=papd4 PE=2 SV=1
Length = 489
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 116/223 (52%), Gaps = 52/223 (23%)
Query: 21 VRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADL 80
++F+ GS++ GFG SSD D+CL V+E V+
Sbjct: 201 AKVFLGGSSLNGFGSRSSDADLCL-----------------VIEEGPVN----------- 232
Query: 81 IHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQD 140
H K D+ + L + VR LLY + +K LI AKVPI+KF+D
Sbjct: 233 -HRK-------DAVYVLSL---------VRK--LLYKLS--YIEKPQLIRAKVPIVKFRD 271
Query: 141 SSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSY 200
+E DLN NN VG+RNT LL YA ++ R+RPLVL++K WA H INDA T+SSY
Sbjct: 272 RISGVEFDLNFNNTVGIRNTFLLRTYAFVEKRVRPLVLVIKKWANHHCINDASRGTLSSY 331
Query: 201 SFTLMVIHFLQCGTSP-PVLPNLVAQYPTKFSPNSNIDNIQEG 242
+ LMV+H+LQ T P PV+P L YPT F P +I + G
Sbjct: 332 TLVLMVLHYLQ--TLPEPVIPCLQRDYPTCFDPKMDIHLVPSG 372
>sp|Q5BLK4|TUT7_MOUSE Terminal uridylyltransferase 7 OS=Mus musculus GN=Zcchc6 PE=1 SV=3
Length = 1491
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 49/226 (21%)
Query: 13 FTLRDPAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCL 72
F +D +L + GS+ GFG SD+D+C+ I +E G + CV ++
Sbjct: 1028 FIKQDFPGTKLSLFGSSKNGFGFKQSDLDVCMTINGHETAEG----LDCV---RTIEELA 1080
Query: 73 EIFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAK 132
+ +K + +PI AK
Sbjct: 1081 RVLRKHSGLRNILPI-----------------------------------------TTAK 1099
Query: 133 VPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDA 192
VPI+KF LEVD++ N + + NT LL Y+ +D R++ L +K++ + +I DA
Sbjct: 1100 VPIVKFFHLRSGLEVDISLYNTLALHNTRLLSAYSAIDPRVKYLCYTMKVFTKMCDIGDA 1159
Query: 193 KNMTISSYSFTLMVIHFLQCGTSPPVLPNLVAQYPTKFSPNSNIDN 238
++SSY++TLMV++FLQ SPPV+P L Y + P +D
Sbjct: 1160 SRGSLSSYAYTLMVLYFLQ-QRSPPVIPVLQEIYKGEKKPEILVDG 1204
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 34/243 (13%)
Query: 3 LSKAVEEYVRFTLRDPAHVRLFVVGSTM----TGFGLDSSDVDMCLGIRPYEFDRGQAIR 58
L + EE + TL PA ++ VGS + FGL S ++D L I+ R
Sbjct: 272 LKEKQEEELLTTLPPPAPSQIHAVGSAIDRVVQEFGLHSENLDQRLEIK----------R 321
Query: 59 VL-CVLETSDVDMCLEIFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYC 117
V+ V D L ++ + L F+DS ++V V+ + LL
Sbjct: 322 VMESVFRHKLPDCSLRLY------GSSCSRLGFRDSDVNIDVQFPA--VMSQPDVLLL-- 371
Query: 118 YAQKIFKKADLI-------HAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMD 170
Q+ K +D HA+VP++ +D L ++ N T L +++
Sbjct: 372 -VQECLKNSDSFIDVDADFHARVPVVVCRDKQSGLLCKVSAGNENAWLTTKHLTALGKLE 430
Query: 171 WRIRPLVLLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLVAQYPTKF 230
R+ PLV+ + WA+ +I+ + + Y F LM + FLQ P+LP + + +F
Sbjct: 431 PRLVPLVIAFRYWAKLCSIDRPEEGGLPPYVFALMAVFFLQ-QRKEPLLPVYLGSWIEEF 489
Query: 231 SPN 233
S N
Sbjct: 490 SLN 492
>sp|Q9UT49|CID13_SCHPO Poly(A) RNA polymerase cid13 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid13 PE=1 SV=1
Length = 578
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 66/107 (61%), Gaps = 3/107 (2%)
Query: 118 YAQKIFKKADLIH-AKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPL 176
+A+ KK I AKVPI+K DS +L D N N + NT L+ Y D R+RPL
Sbjct: 133 FARNGLKKVVCISTAKVPIVKVWDSELQLSCDCNINKTISTLNTRLMRSYVLCDPRVRPL 192
Query: 177 VLLVKLWAQAHNIND-AKNMTISSYSFTLMVIHFLQCGTSPPVLPNL 222
++++K WA+ +ND A+ T++SY+ + MVI+FLQ PP+LP+L
Sbjct: 193 IVMIKYWAKRRCLNDAAEGGTLTSYTISCMVINFLQ-KRDPPILPSL 238
>sp|Q5VYS8|TUT7_HUMAN Terminal uridylyltransferase 7 OS=Homo sapiens GN=ZCCHC6 PE=1 SV=1
Length = 1495
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 100/226 (44%), Gaps = 49/226 (21%)
Query: 13 FTLRDPAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCL 72
F +D +L + GS+ GFG SD+D+C+ I E G + CV ++
Sbjct: 1032 FIRQDFPGTKLSLFGSSKNGFGFKQSDLDVCMTINGLETAEG----LDCV---RTIEELA 1084
Query: 73 EIFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAK 132
+ +K + +PI AK
Sbjct: 1085 RVLRKHSGLRNILPI-----------------------------------------TTAK 1103
Query: 133 VPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDA 192
VPI+KF LEVD++ N + + NT LL Y+ +D R++ L +K++ + +I DA
Sbjct: 1104 VPIVKFFHLRSGLEVDISLYNTLALHNTRLLSAYSAIDPRVKYLCYTMKVFTKMCDIGDA 1163
Query: 193 KNMTISSYSFTLMVIHFLQCGTSPPVLPNLVAQYPTKFSPNSNIDN 238
++SSY++TLMV++FLQ +PPV+P L Y + P +D
Sbjct: 1164 SRGSLSSYAYTLMVLYFLQ-QRNPPVIPVLQEIYKGEKKPEIFVDG 1208
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 130 HAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNI 189
HA+VP++ ++ L ++ N T L +++ ++ PLV+ + WA+ +I
Sbjct: 390 HARVPVVVCREKQSGLLCKVSAGNENACLTTKHLTALGKLEPKLVPLVIAFRYWAKLCSI 449
Query: 190 NDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLVAQYPTKFS----PNSNIDNIQE 241
+ + + Y F LM I FLQ P+LP + + FS N N+ +I++
Sbjct: 450 DRPEEGGLPPYVFALMAIFFLQ-QRKEPLLPVYLGSWIEGFSLSKLGNFNLQDIEK 504
>sp|B2RX14|TUT4_MOUSE Terminal uridylyltransferase 4 OS=Mus musculus GN=Zcchc11 PE=1 SV=2
Length = 1644
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 97/218 (44%), Gaps = 49/218 (22%)
Query: 21 VRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADL 80
RL + GS+ GFG SD+D+C+ + +E ++ C EI +
Sbjct: 1008 ARLCLFGSSKNGFGFRDSDLDICMTLEGHE--------------NAEKLNCKEIIENLAK 1053
Query: 81 IHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQD 140
I + P G+RN + AKVPI+KF+
Sbjct: 1054 ILKRHP---------------------GLRNI-------------LPITTAKVPIVKFEH 1079
Query: 141 SSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSY 200
LE D++ N + NT +L YA +D R++ L +K++A+ +I DA ++SSY
Sbjct: 1080 RRSGLEGDISLYNTLAQHNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSY 1139
Query: 201 SFTLMVIHFLQCGTSPPVLPNLVAQYPTKFSPNSNIDN 238
++ LMV++FLQ PPV+P L + K P +D
Sbjct: 1140 AYILMVLYFLQ-QRKPPVIPVLQEIFDGKQIPQRMVDG 1176
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 106 VVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYC 165
V+G+ LY + F HAKVP++ +D L ++ N + T LL
Sbjct: 452 VLGILKKSALYIDVESDF------HAKVPVVVCKDRKSALLCRVSAGNDMACLTTDLLAA 505
Query: 166 YAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLVAQ 225
+++ PLVL + WA+ I+ + I SY F LMV+ FLQ PP+LP L+
Sbjct: 506 LGKVEPVFTPLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQ-QRKPPLLPCLLGS 564
Query: 226 YPTKFSPNSNIDNIQ 240
+ F P +D+ Q
Sbjct: 565 WIEGFDPK-RMDDFQ 578
>sp|Q5TAX3|TUT4_HUMAN Terminal uridylyltransferase 4 OS=Homo sapiens GN=ZCCHC11 PE=1 SV=3
Length = 1644
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 49/217 (22%)
Query: 21 VRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADL 80
RL + GS+ GFG SD+D+C+ + +E ++ C EI +
Sbjct: 991 ARLCLFGSSKNGFGFRDSDLDICMTLEGHE--------------NAEKLNCKEIIENLAK 1036
Query: 81 IHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQD 140
I + P G+RN + AKVPI+KF+
Sbjct: 1037 ILKRHP---------------------GLRNI-------------LPITTAKVPIVKFEH 1062
Query: 141 SSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSY 200
LE D++ N + NT +L YA +D R++ L +K++A+ +I DA ++SSY
Sbjct: 1063 RRSGLEGDISLYNTLAQHNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSY 1122
Query: 201 SFTLMVIHFLQCGTSPPVLPNLVAQYPTKFSPNSNID 237
++ LMV++FLQ PPV+P L + K P +D
Sbjct: 1123 AYILMVLYFLQ-QRKPPVIPVLQEIFDGKQIPQRMVD 1158
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 8/135 (5%)
Query: 106 VVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYC 165
V+G+ ++LY + F HAKVP++ +D L ++ N + T LL
Sbjct: 432 VLGILKKNVLYVDVESDF------HAKVPVVVCRDRKSGLLCRVSAGNDMACLTTDLLTA 485
Query: 166 YAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLVAQ 225
+++ PLVL + WA+ I+ + I SY F LMV+ FLQ PP+LP L+
Sbjct: 486 LGKIEPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQ-QRKPPLLPCLLGS 544
Query: 226 YPTKFSPNSNIDNIQ 240
+ F P +D+ Q
Sbjct: 545 WIEGFDPK-RMDDFQ 558
>sp|Q9D0D3|PAPD1_MOUSE Poly(A) RNA polymerase, mitochondrial OS=Mus musculus GN=Mtpap PE=2
SV=1
Length = 585
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 61/96 (63%), Gaps = 2/96 (2%)
Query: 128 LIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAH 187
+++A+ P+++F + DL NN + ++++ LLY Y +D R+R LV V+ WA+AH
Sbjct: 308 ILNARCPLVRFSHQGSGFQCDLTANNSIALKSSELLYIYGSLDSRVRALVFSVRCWARAH 367
Query: 188 NINDA-KNMTISSYSFTLMVIHFLQCGTSPPVLPNL 222
++ + I+++S T+MVI FLQ SPP+LP L
Sbjct: 368 SLTSSIPGAWITNFSLTVMVIFFLQ-RRSPPILPTL 402
>sp|O74326|CID11_SCHPO Poly(A) RNA polymerase cid11 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid11 PE=3 SV=1
Length = 478
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Query: 113 HLLYCYAQKIFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWR 172
LLY Y K + + A+VPI+K D F + DLN NN V NT +L + +D R
Sbjct: 127 QLLYSYGMK--QIVCVSRARVPIVKIWDPQFDIHCDLNINNDVAKINTKMLRLFVSIDPR 184
Query: 173 IRPLVLLVKLWAQAHNINDAKNM-TISSYSFTLMVIHFLQCGTSPPVLPNLV 223
+RPL L++K WA+ + DA TI+SY+ + M+++FLQ +PP+LP ++
Sbjct: 185 VRPLGLIIKYWAKQRALCDAAGSGTITSYTISCMLVNFLQT-RNPPILPAML 235
>sp|O13833|CID1_SCHPO Poly(A) RNA polymerase protein cid1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cid1 PE=1 SV=2
Length = 405
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 5/106 (4%)
Query: 123 FKKADLIHAKVPILKFQDSS-----FKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLV 177
F+ L A++PI+K + + D+ NN + + NT LL Y ++D R++P+V
Sbjct: 130 FEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMV 189
Query: 178 LLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLV 223
LLVK WA+ IN T+SSY + LMV+++L PPV PNL+
Sbjct: 190 LLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLL 235
>sp|Q9NVV4|PAPD1_HUMAN Poly(A) RNA polymerase, mitochondrial OS=Homo sapiens GN=MTPAP PE=1
SV=1
Length = 582
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 61/96 (63%), Gaps = 2/96 (2%)
Query: 128 LIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAH 187
+++A+ P+++F + + DL NN + + ++ LLY Y +D R+R LV V+ WA+AH
Sbjct: 305 ILNARCPLVRFSHQASGFQCDLTTNNRIALTSSELLYIYGALDSRVRALVFSVRCWARAH 364
Query: 188 NINDA-KNMTISSYSFTLMVIHFLQCGTSPPVLPNL 222
++ + I+++S T+MVI FLQ SPP+LP L
Sbjct: 365 SLTSSIPGAWITNFSLTMMVIFFLQ-RRSPPILPTL 399
>sp|Q4KMD7|STPAP_DANRE Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Danio
rerio GN=tut1 PE=2 SV=1
Length = 797
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 8/106 (7%)
Query: 122 IFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVK 181
+ K L A++P++KF L+ D+ NN + VRNT L + +D R+RPLV ++
Sbjct: 282 VHKVQALSTARLPVVKFSHKELNLQGDITINNRLAVRNTKFLQLCSGIDSRLRPLVYTIR 341
Query: 182 LWAQAHNINDAKNMT-----ISSYSFTLMVIHFLQCGTSPPVLPNL 222
LWA+ + A N++ +++Y+ TL+VI FLQ PPVLP++
Sbjct: 342 LWAKQKQL--AGNLSGPGPLLNNYALTLLVIFFLQ-NRDPPVLPSV 384
>sp|Q1JPD6|STPAP_BOVIN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Bos taurus
GN=TUT1 PE=2 SV=1
Length = 871
Score = 66.2 bits (160), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Query: 122 IFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVK 181
+++ + A+ P++KF L D++ +N + + N+ L +++D R+RPLV ++
Sbjct: 355 VYRVQTVPSARCPVVKFCHRPSGLHGDISLSNRLALHNSRFLSLCSELDGRVRPLVYTLR 414
Query: 182 LWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLVAQYPTKFSPNSNID 237
WAQ ++ + + +++Y+ TL+VI+FLQ PPVLP V+Q K +D
Sbjct: 415 CWAQGRGLSGSGPL-LNNYALTLLVIYFLQT-RDPPVLPT-VSQLTQKAGEQVEVD 467
>sp|Q3MHT4|STPAP_RAT Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Rattus
norvegicus GN=Tut1 PE=2 SV=1
Length = 866
Score = 65.5 bits (158), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 122 IFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVK 181
+++ + A+ P++KF L D++ +N + + N+ L ++MD R+RPLV ++
Sbjct: 356 VYRVQTVPSARRPVVKFCHRPSGLHGDISLSNRLALYNSRFLNLCSEMDSRVRPLVYTLR 415
Query: 182 LWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLVAQ 225
WAQ HN +++Y+ TL+VI+FLQ PPVLP VAQ
Sbjct: 416 CWAQ-HNGLSGGGPLLNNYALTLLVIYFLQT-RDPPVLPT-VAQ 456
>sp|Q9H6E5|STPAP_HUMAN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Homo
sapiens GN=TUT1 PE=1 SV=2
Length = 874
Score = 65.5 bits (158), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 122 IFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVK 181
+++ + A+ P++KF L D++ +N + + N+ L +++D R+RPLV ++
Sbjct: 355 VYRVQTVPSARRPVVKFCHRPSGLHGDVSLSNRLALHNSRFLSLCSELDGRVRPLVYTLR 414
Query: 182 LWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLVAQYPTK 229
WAQ ++ + + +S+Y+ TL+VI+FLQ PPVLP V+Q K
Sbjct: 415 CWAQGRGLSGSGPL-LSNYALTLLVIYFLQT-RDPPVLPT-VSQLTQK 459
>sp|D2HS90|STPAP_AILME Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Ailuropoda
melanoleuca GN=TUT1 PE=3 SV=1
Length = 869
Score = 65.5 bits (158), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 122 IFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVK 181
+++ + A+ P++KF L D++ +N + + N+ L +++D R+RPLV ++
Sbjct: 354 VYRVQTVPSARRPVVKFCHRPSGLHGDVSLSNRLALHNSRFLSLCSELDGRVRPLVYTLR 413
Query: 182 LWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLVAQYPTK 229
WAQ ++ + + +S+Y+ TL+VI+FLQ PPVLP V+Q K
Sbjct: 414 CWAQGRGLSGSGPL-LSNYALTLLVIYFLQT-RDPPVLPT-VSQLTQK 458
>sp|Q8R3F9|STPAP_MOUSE Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Mus
musculus GN=Tut1 PE=1 SV=1
Length = 869
Score = 65.5 bits (158), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 122 IFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVK 181
+++ + A+ P++KF L D++ +N + + N+ L ++MD R+RPLV ++
Sbjct: 358 VYRVQTVPSARRPVVKFCHRPSGLHGDVSLSNRLALYNSRFLNLCSEMDGRVRPLVYTLR 417
Query: 182 LWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLVAQ 225
WAQ HN +++Y+ TL+VI+FLQ PPVLP VAQ
Sbjct: 418 CWAQ-HNGLSGGGPLLNNYALTLLVIYFLQT-RDPPVLPT-VAQ 458
>sp|O13798|CID16_SCHPO Caffeine-induced protein 16 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=cid16 PE=4 SV=1
Length = 1202
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 131 AKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNIN 190
A++PI+KF + + DL+ +N++ + N+ L+ Y+ +D R++ L++LVK WA I+
Sbjct: 976 ARIPIIKFT-GQYNIHCDLSFDNLLPIHNSDLILNYSLIDERVKTLLMLVKYWASNRLID 1034
Query: 191 DAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLVAQYPTKFS 231
+ SSY++ +MVI +LQ P+LPNL + T++S
Sbjct: 1035 KTHHAFPSSYTWCIMVIFYLQ-QIPEPILPNL-QKLSTQYS 1073
>sp|A9JTS5|STPAP_XENTR Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Xenopus
tropicalis GN=tut1 PE=2 SV=1
Length = 843
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 131 AKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNIN 190
A+ P++ FQ + L D+ NN + +RN+ L + +D R+ LV V+ WA+ + +
Sbjct: 326 ARRPVIHFQHKTSGLRGDVTLNNRLALRNSSFLRLCSDLDARVPQLVYTVRYWARVNQLA 385
Query: 191 D---AKNMTISSYSFTLMVIHFLQCGTSPPVLPNLV 223
+++Y+ TL+V FLQ +PPVLP LV
Sbjct: 386 GNPFGGGPLLNNYALTLLVFFFLQT-RNPPVLPTLV 420
>sp|Q6PB75|PAPD7_MOUSE DNA polymerase sigma OS=Mus musculus GN=Papd7 PE=2 SV=1
Length = 542
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 128 LIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAH 187
L A VPI+K D +++VD++ N GVR + Y + + L+L++K +
Sbjct: 82 LDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQR 141
Query: 188 NINDAKNMTISSYSFTLMVIHFLQ 211
++N+ ISSYS LM I FLQ
Sbjct: 142 DLNEVFTGGISSYSLILMAISFLQ 165
>sp|Q5XG87|PAPD7_HUMAN DNA polymerase sigma OS=Homo sapiens GN=PAPD7 PE=1 SV=2
Length = 542
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 131 AKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNIN 190
A VPI+K D +++VD++ N GVR + Y + + L+L++K + ++N
Sbjct: 85 ATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLN 144
Query: 191 DAKNMTISSYSFTLMVIHFLQ 211
+ ISSYS LM I FLQ
Sbjct: 145 EVFTGGISSYSLILMAISFLQ 165
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 19 AHVRLFVVGSTMTGFGLDSSDVDMCL---GIRPYEFDRGQAIRVLCVLETSDVDMCLEIF 75
A V++F GS TG L +SD+D+ + RP QA+R V E + +
Sbjct: 29 ADVQIF--GSFSTGLYLPTSDIDLVVFGKWERPPLQLLEQALRKHNVAEPCSIKV----- 81
Query: 76 KKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPI 135
L A VPI+K D +++VD++ N GVR + Y KK L+ + +
Sbjct: 82 ----LDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY----MKKYSLLPYLILV 133
Query: 136 LKFQDSSFKLEVDLNCNNVVGVRNTHLL 163
LK F L+ DLN G+ + L+
Sbjct: 134 LK----QFLLQRDLNEVFTGGISSYSLI 157
>sp|G5EFL0|GLD4_CAEEL Poly(A) RNA polymerase gld-4 OS=Caenorhabditis elegans GN=gld-4
PE=1 SV=1
Length = 845
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 133 VPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDA 192
VPI+K D +L +D++ N V GVR + + I PLVLL+K + N+N
Sbjct: 181 VPIVKMVDRDTRLSIDISFNTVQGVRAASYIAKVKEEFPLIEPLVLLLKQFLHYRNLNQT 240
Query: 193 KNMTISSYSFTLMVIHFLQ 211
+SSY L++++F Q
Sbjct: 241 FTGGLSSYGLVLLLVNFFQ 259
>sp|Q68ED3|PAPD5_MOUSE PAP-associated domain-containing protein 5 OS=Mus musculus GN=Papd5
PE=2 SV=2
Length = 633
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 128 LIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAH 187
L A VPI+K DS +++VD++ N GVR L+ + + + LVL++K +
Sbjct: 226 LDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQR 285
Query: 188 NINDAKNMTISSYSFTLMVIHFLQ 211
++N+ I SYS LM + FLQ
Sbjct: 286 DLNEVFTGGIGSYSLFLMAVSFLQ 309
>sp|Q8NDF8|PAPD5_HUMAN PAP-associated domain-containing protein 5 OS=Homo sapiens GN=PAPD5
PE=1 SV=2
Length = 572
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 128 LIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAH 187
L A VPI+K DS +++VD++ N GVR L+ + + + LVL++K +
Sbjct: 212 LDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQR 271
Query: 188 NINDAKNMTISSYSFTLMVIHFLQ 211
++N+ I SYS LM + FLQ
Sbjct: 272 DLNEVFTGGIGSYSLFLMAVSFLQ 295
>sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid14 PE=1 SV=2
Length = 684
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 131 AKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNIN 190
A VPI+KF D K+ VD++ N G++ ++ + + +RPLV+++K + +N
Sbjct: 339 ANVPIIKFVDPLTKVHVDISFNQPGGLKTCLVVNGFMKKYPALRPLVIIIKHFLNMRALN 398
Query: 191 DAKNMTISSYSFTLMVIHFLQ 211
+ +SSY+ +V+ FLQ
Sbjct: 399 EVFLGGLSSYAIVCLVVSFLQ 419
>sp|Q9HFW3|TRF5_ASHGO Poly(A) RNA polymerase protein 1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TRF5
PE=3 SV=1
Length = 626
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 128 LIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAH 187
+ A+VPI+KF + + ++ +DL+ GV ++ + +R LVL+VK + A
Sbjct: 289 IAKARVPIIKFVEPASQIHIDLSFERTNGVEAAKIIRGWLHDTPGLRELVLIVKQFLHAR 348
Query: 188 NINDAKNMTISSYSFTLMVIHFLQ 211
+ND + +S + FL+
Sbjct: 349 RLNDVHIGGLGGFSIICLAYSFLK 372
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1
Length = 584
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 100 DLNC---NNVVGVRNTHLLYCYAQKIFKK------ADLIHAKVPILKFQDSSFKLEVDLN 150
D++C + + G + + LY A + KK + A+VPI+KF + + +D++
Sbjct: 236 DIDCVVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIDVS 295
Query: 151 CNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSYSFTLMVIHFL 210
G+ L+ + +R LVL+VK + A +N+ + +S +V FL
Sbjct: 296 FERTNGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFL 355
Query: 211 QCGTSPPVLPNLV 223
P ++ N +
Sbjct: 356 HM--HPRIITNEI 366
>sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2
Length = 642
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 42/83 (50%)
Query: 128 LIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAH 187
++ +VPI+KF + +L +D++ G+ L+ + + +R LVL++K + +
Sbjct: 270 IVKTRVPIIKFIEPQSQLHIDVSFERTNGLEAAKLIREWLRDSPGLRELVLIIKQFLHSR 329
Query: 188 NINDAKNMTISSYSFTLMVIHFL 210
+N+ + ++ +V FL
Sbjct: 330 RLNNVHTGGLGGFTVICLVYSFL 352
>sp|Q43629|ARC4_PHAVU Arcelin-4 OS=Phaseolus vulgaris GN=ARC4 PE=2 SV=1
Length = 266
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 16/146 (10%)
Query: 35 LDSSDVDMCLGIRPYEFDRGQAIRVLCVL-----ETSDVDMCLEIFKKADLIHAKVPILK 89
L S D + IRPY + A + L E D L +F K D A + +
Sbjct: 86 LASFDTNFTFSIRPYSNNENSAFGLAFALVPVDSEPKRKDYFLGLFNKPDDPEAHIVAVV 145
Query: 90 FQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKI--------FKK---ADLIHAKVPILKF 138
F SS ++E+D+N + V + H +K+ KK A L++ +
Sbjct: 146 FDTSSNQIEIDMNSISPVARESCHFHKYNGEKVEVRITYDSSKKNLRASLVYLREQSATS 205
Query: 139 QDSSFKLEVDLNCNNVVGVRNTHLLY 164
SS +E LN VG T LY
Sbjct: 206 STSSVHMEKVLNDWVSVGFSATSGLY 231
>sp|P05475|YKP9_KLULA Uncharacterized killer plasmid pGKl-2 protein 9 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) PE=4 SV=1
Length = 453
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 80 LIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKAD----LIHAKVPI 135
I K +K+ + +EVD N NNVV ++ YCY K+ +K + L + I
Sbjct: 289 FIKEKYKNIKYHEDEKIIEVDYN-NNVVKQKDMAEYYCYNNKLIQKIEEPVKLPKIEAQI 347
Query: 136 LKFQDSSFKLEVDLNCNNVVGVR 158
L ++ ++ +D N+ G R
Sbjct: 348 LNKRNERVEVLIDNEWKNLAGNR 370
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,807,754
Number of Sequences: 539616
Number of extensions: 3452825
Number of successful extensions: 8365
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 8241
Number of HSP's gapped (non-prelim): 77
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)