Query psy12993
Match_columns 243
No_of_seqs 167 out of 1174
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 16:23:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pq1_A Poly(A) RNA polymerase; 100.0 1.2E-40 4E-45 311.6 20.1 181 5-226 157-351 (464)
2 4fh3_A Poly(A) RNA polymerase 100.0 2E-40 6.7E-45 301.1 18.6 184 4-242 38-267 (349)
3 3nyb_A Poly(A) RNA polymerase 100.0 8.1E-40 2.8E-44 295.1 15.9 188 4-243 43-242 (323)
4 2ikf_A RNA uridylyl transferas 100.0 1.5E-39 5.2E-44 296.5 16.3 194 4-242 50-284 (353)
5 4e8f_A Poly(A) RNA polymerase 100.0 6.6E-39 2.3E-43 297.0 20.4 169 4-227 66-239 (405)
6 3hj4_A Minor editosome-associa 100.0 6.7E-39 2.3E-43 292.9 16.0 177 4-227 29-206 (384)
7 2b4v_A RNA editing complex pro 100.0 1.1E-38 3.9E-43 299.4 16.9 229 4-242 42-374 (468)
8 1q79_A Poly(A) polymerase alph 100.0 9.4E-29 3.2E-33 234.3 14.6 164 18-237 92-286 (514)
9 2hhp_A Poly(A) polymerase; tem 100.0 1.5E-28 5E-33 233.8 13.7 162 20-237 81-273 (530)
10 1r89_A TRNA nucleotidyltransfe 98.9 5.9E-08 2E-12 90.0 16.5 147 3-209 24-182 (437)
11 1px5_A 2'-5'-oligoadenylate sy 98.5 9.6E-07 3.3E-11 79.7 11.9 52 160-212 190-242 (349)
12 1no5_A Hypothetical protein HI 98.1 4.9E-06 1.7E-10 63.2 5.6 45 4-48 11-55 (114)
13 1ylq_A Putative nucleotidyltra 98.0 4E-06 1.4E-10 61.9 3.8 43 6-48 3-46 (96)
14 1wot_A Putative minimal nucleo 97.8 8.2E-06 2.8E-10 60.3 2.2 47 1-48 4-53 (98)
15 2rff_A Putative nucleotidyltra 97.7 3.5E-05 1.2E-09 58.4 4.3 44 5-48 17-61 (111)
16 4ebj_A Aminoglycoside nucleoti 97.4 9.9E-05 3.4E-09 63.4 4.4 48 2-49 21-69 (272)
17 1kny_A Kntase, kanamycin nucle 96.9 0.00053 1.8E-08 58.9 3.3 45 4-48 13-59 (253)
18 3jz0_A Lincosamide nucleotidyl 95.6 0.016 5.6E-07 50.7 5.6 48 1-48 22-69 (287)
19 4at7_A Interleukin enhancer-bi 95.5 0.18 6.3E-06 45.3 12.2 146 21-213 74-230 (364)
20 2fmp_A DNA polymerase beta; nu 82.9 5.4 0.00019 35.2 8.9 41 7-48 159-199 (335)
21 2bcq_A DNA polymerase lambda; 76.3 17 0.00058 32.0 9.9 62 7-81 156-217 (335)
22 2pbe_A AAD6, aminoglycoside 6- 75.6 3.2 0.00011 36.0 4.9 44 5-48 8-53 (294)
23 3nyb_A Poly(A) RNA polymerase 63.4 0.31 1.1E-05 43.1 -4.5 104 82-190 117-232 (323)
24 3b0x_A DNA polymerase beta fam 63.0 70 0.0024 30.0 11.6 40 7-47 167-206 (575)
25 4at7_B NF90, interleukin enhan 60.9 8.6 0.0003 34.7 4.5 59 150-212 205-263 (383)
26 1jaj_A DNA polymerase beta-lik 59.5 8.9 0.0003 30.7 4.0 29 18-47 29-57 (174)
27 2ihm_A POL MU, DNA polymerase 58.5 16 0.00055 32.5 5.9 62 7-81 163-224 (360)
28 1jms_A Terminal deoxynucleotid 48.8 36 0.0012 30.5 6.6 63 8-81 184-246 (381)
29 2fcl_A Hypothetical protein TM 43.1 22 0.00074 28.1 3.8 40 3-44 18-60 (169)
30 1v4a_A Glutamate-ammonia-ligas 41.2 72 0.0025 29.0 7.5 29 20-48 154-182 (440)
31 2kng_A Protein LSR2; DNA-bindi 37.4 27 0.00091 22.6 2.8 25 177-201 15-39 (55)
32 3c18_A Nucleotidyltransferase- 35.5 27 0.00092 30.3 3.4 29 21-49 21-49 (290)
33 3k7d_A Glutamate-ammonia-ligas 28.4 90 0.0031 28.9 6.0 29 20-48 234-262 (498)
34 3hj4_A Minor editosome-associa 22.2 16 0.00056 32.9 -0.4 40 79-118 108-147 (384)
35 3nku_A DRRA, SIDM; posttransla 21.5 1.2E+02 0.004 23.4 4.4 33 17-49 83-115 (213)
36 3pq1_A Poly(A) RNA polymerase; 21.0 20 0.00069 33.1 -0.0 40 79-118 252-291 (464)
No 1
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=311.64 Aligned_cols=181 Identities=25% Similarity=0.410 Sum_probs=134.1
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecccccCCCCCCCCceEEEeecCCcCCh-----hhH-HH-Hhhhcc--cchh----HHH
Q psy12993 5 KAVEEYVRFTLRDPAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDR-----GQA-IR-VLCVLE--TSDV----DMC 71 (243)
Q Consensus 5 ~~i~~~~~~i~~~~p~~~v~~fGS~~tGl~l~~SDiDl~l~~~~~~~~~-----~~a-~~-~l~~~~--~~~~----~~~ 71 (243)
.+++++++++++.||+++|+||||++|||++|+||||+++..+...... +.. .+ .+..+. +... ..+
T Consensus 157 ~vv~~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~~iL~~l 236 (464)
T 3pq1_A 157 LTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVL 236 (464)
T ss_dssp HHHHHHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-----CCSCEECC---EECCCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCccCCCCCCCCeEEEEecCCcccccccccccchhhhhhhccchhhHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999865421000 000 00 000000 0001 122
Q ss_pred HHHHhhccccccccceeecccCccceeeecccccccccccccccccccccceeEeeeccCCcceEEEEeCCCCeeEEEEe
Q psy12993 72 LEIFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDSSFKLEVDLNC 151 (243)
Q Consensus 72 ~~~L~~~~~~~~~~p~~~~~~~~~~~e~~~~~~~~~g~r~~~~~~c~~~~~~~~~~i~~ArVPIik~~~~~~~i~~DIs~ 151 (243)
.+.|++.. +| +.++..|.+||||||||+|..+|+.|||||
T Consensus 237 a~~L~~~~---------------------------~~-------------~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~ 276 (464)
T 3pq1_A 237 GECLDHFG---------------------------PG-------------CVGVQKILNARCPLVRFSHQASGFQCALTT 276 (464)
T ss_dssp HHHHHHSS---------------------------TT-------------EEEEEEECSSSSCEEEEEETTTCCEEEEEC
T ss_pred HHHHHhcC---------------------------CC-------------CceeEEecCCCCCEEEEEEcCCCeEEEEec
Confidence 33333211 01 135567999999999999999999999999
Q ss_pred cCchHhHHHHHHHHHHhcCcchHHHHHHHHHHHHHCCCCCCCCCC-CChHHHHHHHHHHHhcCCCCCcccchhhhc
Q psy12993 152 NNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMT-ISSYSFTLMVIHFLQCGTSPPVLPNLVAQY 226 (243)
Q Consensus 152 ~n~~g~~ns~ll~~~~~~~p~~r~L~~~lK~W~~~~~L~~~~~G~-lsSy~l~lmvi~fLq~~~~~~iLp~l~~~~ 226 (243)
+|..|+.||++++.|.+.||++|+|++++|+|++++||++++.|| ||||+|++|||+|||+ +.||+||++|+++
T Consensus 277 nn~~gi~ns~ll~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~-~~ppvLP~Lq~l~ 351 (464)
T 3pq1_A 277 NNRIALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQR-RSPPILPTLDSLK 351 (464)
T ss_dssp SCTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHS-CC-------CCSH
T ss_pred CCCcHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHHHHHHHHHHHc-cCCCcCCChHHhc
Confidence 999999999999999999999999999999999999999999998 9999999999999998 6899999999975
No 2
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=2e-40 Score=301.14 Aligned_cols=184 Identities=30% Similarity=0.499 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEecccccCCCCCCCCceEEEeecCCcCChhhHHHHhhhcccchhHHHHHHHhhcccccc
Q psy12993 4 SKAVEEYVRFTLRDPAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLIHA 83 (243)
Q Consensus 4 ~~~i~~~~~~i~~~~p~~~v~~fGS~~tGl~l~~SDiDl~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~L~~~~~~~~ 83 (243)
.++++++++++++.||+++|++|||++||+++|+||||+++..+... ...... .++.+.+.+..
T Consensus 38 ~~~~~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~-~~~~~~-----------~~~~~~~~~~~---- 101 (349)
T 4fh3_A 38 RAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRV-QSDTIA-----------LQFYEELIAEG---- 101 (349)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTS-CHHHHH-----------HHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEecCCCC-ChHHHH-----------HHHHHHHHhhc----
Confidence 45788999999999999999999999999999999999999875432 211110 12222222111
Q ss_pred ccceeecccCccceeeecccccccccccccccccccccceeEeeeccCCcceEEEEeCC-----CCeeEEEEecCchHhH
Q psy12993 84 KVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDSS-----FKLEVDLNCNNVVGVR 158 (243)
Q Consensus 84 ~~p~~~~~~~~~~~e~~~~~~~~~g~r~~~~~~c~~~~~~~~~~i~~ArVPIik~~~~~-----~~i~~DIs~~n~~g~~ 158 (243)
.+...|.+||||||||++.. +|+.||||++|.+|++
T Consensus 102 ---------------------------------------~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~~~g~~ 142 (349)
T 4fh3_A 102 ---------------------------------------FEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIH 142 (349)
T ss_dssp ---------------------------------------EEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESCHHHHH
T ss_pred ---------------------------------------ccceEeeeeeeeeEEEEecccccccccceeecCcCcchHHH
Confidence 23456889999999999863 7899999999999999
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCcccc-----------------
Q psy12993 159 NTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPN----------------- 221 (243)
Q Consensus 159 ns~ll~~~~~~~p~~r~L~~~lK~W~~~~~L~~~~~G~lsSy~l~lmvi~fLq~~~~~~iLp~----------------- 221 (243)
||.+++.|...+|++|+|++++|+||+++||++++.||||||+|++||++|||+...||++|+
T Consensus 143 ~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~ 222 (349)
T 4fh3_A 143 NTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDV 222 (349)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEEC
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccccccccccCccc
Confidence 999999999999999999999999999999999999999999999999999998788898887
Q ss_pred ------------------------hhhhcCCCCCCCcccccccCC
Q psy12993 222 ------------------------LVAQYPTKFSPNSNIDNIQEG 242 (243)
Q Consensus 222 ------------------------l~~~~~~~f~p~~~~~~~~~~ 242 (243)
|+++|+..|+....++++..|
T Consensus 223 ~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~ 267 (349)
T 4fh3_A 223 GFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRP 267 (349)
T ss_dssp CCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSST
T ss_pred ccccchhhcccccCcccHHHHHHHHHHHhhhccCCCCceEEecCC
Confidence 456777788888888887654
No 3
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-40 Score=295.13 Aligned_cols=188 Identities=20% Similarity=0.255 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEecccccCCCCCCCCceEEEeecCCcCChhhHHHHhhhcccchhHHHHHHHhhcccccc
Q psy12993 4 SKAVEEYVRFTLRDPAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLIHA 83 (243)
Q Consensus 4 ~~~i~~~~~~i~~~~p~~~v~~fGS~~tGl~l~~SDiDl~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~L~~~~~~~~ 83 (243)
.++++++++++++.||+++|++|||+++|+++|+||||+++..+....+ ....+ .++.+.|++.+..
T Consensus 43 ~~~~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~---~~~~l--------~~l~~~L~~~~~~-- 109 (323)
T 3nyb_A 43 NQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSELGGKE---SRNNL--------YSLASHLKKKNLA-- 109 (323)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSCEEEEECSSCCGGG---HHHHH--------HHHHHHHHHTTSC--
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCccccCCCCCCCCceEEEecCCCChh---HHHHH--------HHHHHHHhhCCCc--
Confidence 4678899999999999999999999999999999999999987653211 11222 3667777765420
Q ss_pred ccceeecccCccceeeecccccccccccccccccccccceeEeeeccCCcceEEEEeCCCCeeEEEEecCchHhHHHHHH
Q psy12993 84 KVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLL 163 (243)
Q Consensus 84 ~~p~~~~~~~~~~~e~~~~~~~~~g~r~~~~~~c~~~~~~~~~~i~~ArVPIik~~~~~~~i~~DIs~~n~~g~~ns~ll 163 (243)
.++..|.+||||||||+|..+|++||||++|.+|++||.++
T Consensus 110 ---------------------------------------~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~~g~~~t~li 150 (323)
T 3nyb_A 110 ---------------------------------------TEVEVVAKARVPIIKFVEPHSGIHIAVSFERTNGIEAAKLI 150 (323)
T ss_dssp ---------------------------------------SSCEEEESSSCEEEEEEETTTTEEEEEESSCSSTTHHHHHH
T ss_pred ---------------------------------------eEEEEEeccCCCEEEEEEcCCCceEEEEecCcHHHHHHHHH
Confidence 23456889999999999999999999999999999999999
Q ss_pred HHHHhcCcchHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCC--C----------CcccchhhhcCCCCC
Q psy12993 164 YCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTS--P----------PVLPNLVAQYPTKFS 231 (243)
Q Consensus 164 ~~~~~~~p~~r~L~~~lK~W~~~~~L~~~~~G~lsSy~l~lmvi~fLq~~~~--~----------~iLp~l~~~~~~~f~ 231 (243)
+.|...+|++|+|++++|+|++++||++++.||||||+|++||++|||.++. | .+|-.|+++|+..|+
T Consensus 151 ~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~~~Fd 230 (323)
T 3nyb_A 151 REWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFG 230 (323)
T ss_dssp HHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCccccHHHHHHHHHHHhccccC
Confidence 9999999999999999999999999999999999999999999999998521 0 256678999999999
Q ss_pred CCcccccccCCC
Q psy12993 232 PNSNIDNIQEGK 243 (243)
Q Consensus 232 p~~~~~~~~~~~ 243 (243)
+...++++.+|+
T Consensus 231 ~~~~~Isv~~g~ 242 (323)
T 3nyb_A 231 YDDVALGSSDGY 242 (323)
T ss_dssp TTTEEEEESSSC
T ss_pred CCCcEEEEecCC
Confidence 999999998874
No 4
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=1.5e-39 Score=296.50 Aligned_cols=194 Identities=20% Similarity=0.310 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEecccc-cCCCCCCCCceEEEeecCCc-----CCh-hhHHHHhhhcccchhHHHHHHHh
Q psy12993 4 SKAVEEYVRFTLRDPAHVRLFVVGSTM-TGFGLDSSDVDMCLGIRPYE-----FDR-GQAIRVLCVLETSDVDMCLEIFK 76 (243)
Q Consensus 4 ~~~i~~~~~~i~~~~p~~~v~~fGS~~-tGl~l~~SDiDl~l~~~~~~-----~~~-~~a~~~l~~~~~~~~~~~~~~L~ 76 (243)
+++++++++++++.||+++|++|||+. +|+++|+||||+++..+... .+. .+..+.+. .....++.+.|+
T Consensus 50 ~~~~~~l~~~i~~~~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~L~ 126 (353)
T 2ikf_A 50 DATYRLVLDCVAAVDPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQ---ADILAKLARVIR 126 (353)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcEEEEecCccccCCCCCCcceeEEEeecccccccccccchhhhhhhhH---HHHHHHHHHHHH
Confidence 578899999999999999999999996 99999999999999764210 000 00000000 011234556665
Q ss_pred hccccccccceeecccCccceeeecccccccccccccccccccccceeEeeeccCCcceEEEEeCCCCeeEEEEecCchH
Q psy12993 77 KADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVG 156 (243)
Q Consensus 77 ~~~~~~~~~p~~~~~~~~~~~e~~~~~~~~~g~r~~~~~~c~~~~~~~~~~i~~ArVPIik~~~~~~~i~~DIs~~n~~g 156 (243)
+.+. ..++..|.+||||||||++ ++|++|||||+|.+|
T Consensus 127 ~~~~-----------------------------------------~~~v~~i~~ArVPIiK~~~-~~~i~~Dis~~n~~g 164 (353)
T 2ikf_A 127 QKHL-----------------------------------------SWNVEEVRRTRVPVVRVKG-GGAVDFDITAYRRNG 164 (353)
T ss_dssp HHCT-----------------------------------------TSEEEEECSSSSCEEEEEC-SSSCEEEEEESCCHH
T ss_pred hcCC-----------------------------------------CCceEEecccceeEEEEEc-CCCcEEEEEecCccH
Confidence 5432 0245568999999999999 589999999999999
Q ss_pred hHHHHHHHHHHhcCcchHHHHHHHHHHHHHCCCCCCCC-CCCChHHHHHHHHHHHhcCCCCCcccch-------------
Q psy12993 157 VRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKN-MTISSYSFTLMVIHFLQCGTSPPVLPNL------------- 222 (243)
Q Consensus 157 ~~ns~ll~~~~~~~p~~r~L~~~lK~W~~~~~L~~~~~-G~lsSy~l~lmvi~fLq~~~~~~iLp~l------------- 222 (243)
++||++++.|.+.+|++|+|++++|+|++++||++++. ||||||+|++||++|||+.+.||++|++
T Consensus 165 ~~~t~ll~~~~~~~p~~r~l~~~iK~wa~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~ 244 (353)
T 2ikf_A 165 VRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPH 244 (353)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCC
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccChhhccCCCcC
Confidence 99999999999999999999999999999999999999 9999999999999999986677877754
Q ss_pred --------------------hhhcCCCCCCCcccccccCC
Q psy12993 223 --------------------VAQYPTKFSPNSNIDNIQEG 242 (243)
Q Consensus 223 --------------------~~~~~~~f~p~~~~~~~~~~ 242 (243)
+++|+..|+....++++.+|
T Consensus 245 ~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIsi~~~ 284 (353)
T 2ikf_A 245 LPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISLNRP 284 (353)
T ss_dssp CCCCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEECSSSS
T ss_pred CccccCCCCcccHHHHHHHHHHHhccccCcCceEEEcCCC
Confidence 45667778888888887665
No 5
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=6.6e-39 Score=297.02 Aligned_cols=169 Identities=31% Similarity=0.505 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEecccccCCCCCCCCceEEEeecCCcCChhhHHHHhhhcccchhHHHHHHHhhcccccc
Q psy12993 4 SKAVEEYVRFTLRDPAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLIHA 83 (243)
Q Consensus 4 ~~~i~~~~~~i~~~~p~~~v~~fGS~~tGl~l~~SDiDl~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~L~~~~~~~~ 83 (243)
.+.++++++++++.||+++|++|||+++|+++++||||+++..+... +..+ . ..++.+.|++..
T Consensus 66 ~~v~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~-~~~~---~--------l~~l~~~L~~~~---- 129 (405)
T 4e8f_A 66 RAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRV-QSDT---I--------ALQFYEELIAEG---- 129 (405)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC----CTT---H--------HHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEEecCCC-CHHH---H--------HHHHHHHHHhcC----
Confidence 46788899999999999999999999999999999999999975421 1111 1 125566665431
Q ss_pred ccceeecccCccceeeecccccccccccccccccccccceeEeeeccCCcceEEEE-eCCC----CeeEEEEecCchHhH
Q psy12993 84 KVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQ-DSSF----KLEVDLNCNNVVGVR 158 (243)
Q Consensus 84 ~~p~~~~~~~~~~~e~~~~~~~~~g~r~~~~~~c~~~~~~~~~~i~~ArVPIik~~-~~~~----~i~~DIs~~n~~g~~ 158 (243)
.++..|.+||||||||+ |+.+ |++|||||+|..|+.
T Consensus 130 ---------------------------------------~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~~g~~ 170 (405)
T 4e8f_A 130 ---------------------------------------FEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIH 170 (405)
T ss_dssp ---------------------------------------EEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCHHHHH
T ss_pred ---------------------------------------CeeEEeccCCCcEEEEEeccCCCccCceEEEEeecccchHH
Confidence 34557899999999999 8878 999999999999999
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCcccchhhhcC
Q psy12993 159 NTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLVAQYP 227 (243)
Q Consensus 159 ns~ll~~~~~~~p~~r~L~~~lK~W~~~~~L~~~~~G~lsSy~l~lmvi~fLq~~~~~~iLp~l~~~~~ 227 (243)
||.+++.|.+.+|++|+|++++|+|++++||++++.||||||+|++||++|||+...||+||++|++++
T Consensus 171 ~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~ 239 (405)
T 4e8f_A 171 NTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPL 239 (405)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTT
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhccc
Confidence 999999999999999999999999999999999999999999999999999944478999999887543
No 6
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=6.7e-39 Score=292.85 Aligned_cols=177 Identities=21% Similarity=0.295 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEecccccCCCCCCCCceEEEeecCCcCChhhHHHHhhhcccchhHHHHHHHhhcccccc
Q psy12993 4 SKAVEEYVRFTLRDPAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLIHA 83 (243)
Q Consensus 4 ~~~i~~~~~~i~~~~p~~~v~~fGS~~tGl~l~~SDiDl~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~L~~~~~~~~ 83 (243)
.++++++++++++.||+++|.+|||++||+++|+||||+++..++..... +..+... .....++.+ |++...
T Consensus 29 ~~vv~~l~~ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~~~~~-~~~~~~~---~~~~lrll~-L~k~~~--- 100 (384)
T 3hj4_A 29 HELQKRVLDIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWL-QGMERVD---EQNNKRMTR-FGKEAS--- 100 (384)
T ss_dssp HHHHHHHHHHHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTTCCGGG-TTCHHHH---HHHHHHHHH-HHHHHH---
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeeeccCCCCCCCCCeeEEEecCCCcccc-cccchhh---HHHHHHHHH-HHhhcc---
Confidence 46788899999999999999999999999999999999999986532100 0000000 000001111 211100
Q ss_pred ccceeecccCccceeeecccccccccccccccccccccceeEeeeccCCcceEEEEeCCCCeeEEEEecCchHhHHHHHH
Q psy12993 84 KVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLL 163 (243)
Q Consensus 84 ~~p~~~~~~~~~~~e~~~~~~~~~g~r~~~~~~c~~~~~~~~~~i~~ArVPIik~~~~~~~i~~DIs~~n~~g~~ns~ll 163 (243)
...++...|.+||||||||+|..+|+.||||++|..|+.||+++
T Consensus 101 ------------------------------------~~~ie~V~ii~ARVPIIKf~d~~tgi~~DIS~nn~~gi~ns~ll 144 (384)
T 3hj4_A 101 ------------------------------------AMGMEDVRYIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKIL 144 (384)
T ss_dssp ------------------------------------HHTCEEEEEECSSSCEEEEECTTTCCEEEEEECCHHHHHHHHHH
T ss_pred ------------------------------------cCCeeEEeecCcccCEEEEEEcCCCeEEEEEecccchHHHHHHH
Confidence 00034456789999999999999999999999999999999999
Q ss_pred HHHHhcCc-chHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCcccchhhhcC
Q psy12993 164 YCYAQMDW-RIRPLVLLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLVAQYP 227 (243)
Q Consensus 164 ~~~~~~~p-~~r~L~~~lK~W~~~~~L~~~~~G~lsSy~l~lmvi~fLq~~~~~~iLp~l~~~~~ 227 (243)
+.|.+.+| ++|+|++++|+|++++||++++.||||||+|++||++|||++ |+||+++++.+
T Consensus 145 ~~y~~~~p~rlr~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~---~vLP~Lq~~~~ 206 (384)
T 3hj4_A 145 CAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQEL---GLLPVFSKPTG 206 (384)
T ss_dssp HHHHHTSHHHHHHHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHH---TSSCCCCCCCS
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcC---CCCCccccccc
Confidence 99999955 799999999999999999999999999999999999999995 99999998543
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=1.1e-38 Score=299.44 Aligned_cols=229 Identities=21% Similarity=0.306 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEeccc-ccCCCCCCCCceEEEeecCCcCCh-hhHHHHhhhcccchhHHHHHHHhhc--c
Q psy12993 4 SKAVEEYVRFTLRDPAHVRLFVVGST-MTGFGLDSSDVDMCLGIRPYEFDR-GQAIRVLCVLETSDVDMCLEIFKKA--D 79 (243)
Q Consensus 4 ~~~i~~~~~~i~~~~p~~~v~~fGS~-~tGl~l~~SDiDl~l~~~~~~~~~-~~a~~~l~~~~~~~~~~~~~~L~~~--~ 79 (243)
+++++++++++++.||+++|++|||+ .+|+++|+||||+++...+..... .++.. ..++.+.|++. +
T Consensus 42 ~~a~~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~~~~~~~~~~~~---------~~~l~~~L~~~~~~ 112 (468)
T 2b4v_A 42 IRAQQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLACMFDDPYPSHEVQAKR---------TDKLRTVIKRYVPH 112 (468)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEEECSSSSCCHHHHHHH---------HHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeeCchhcCCCCCCCceeEEEecCCCCccchhhHHH---------HHHHHHHHHHhccc
Confidence 46889999999999999999999999 589999999999999986322111 11111 13577788766 4
Q ss_pred c--------cccccceeecccCcc-c----eeeecccc-------cccccccccc-------------------------
Q psy12993 80 L--------IHAKVPILKFQDSSF-K----LEVDLNCN-------NVVGVRNTHL------------------------- 114 (243)
Q Consensus 80 ~--------~~~~~p~~~~~~~~~-~----~e~~~~~~-------~~~g~r~~~~------------------------- 114 (243)
+ .+++|||+|+..... + +...+... ...+.++.+.
T Consensus 113 ~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 192 (468)
T 2b4v_A 113 YLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKARTALLDVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRT 192 (468)
T ss_dssp HHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHHHHHTEEEEEEESCCCCHHHHHHHHHHHCGGGEEEEEEEEC
T ss_pred cccceeEeccCCCcceEEEEeccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccc
Confidence 2 255556655431000 0 00000000 0000000000
Q ss_pred -cccccc-------------cceeEeee----ccCCc--ceE--EEEeCCCCeeEEEEecCchHhHHHHHHHHHHhcCcc
Q psy12993 115 -LYCYAQ-------------KIFKKADL----IHAKV--PIL--KFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWR 172 (243)
Q Consensus 115 -~~c~~~-------------~~~~~~~i----~~ArV--PIi--k~~~~~~~i~~DIs~~n~~g~~ns~ll~~~~~~~p~ 172 (243)
..|... +.+..-.+ .++++ |++ ||.+..+|++|||||| .+|+.||++++.|.+.||+
T Consensus 193 ~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ld~rf~~~~~gi~~DISfn-~~gi~nS~ll~~y~~~dpr 271 (468)
T 2b4v_A 193 TYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRDVLDVRFVPEMFMYRWDISFV-GYGVKNSYLIRHYLHNGPV 271 (468)
T ss_dssp SSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEEESCTTSCCGGGSSCEEEESC-SHHHHHHHHHHHHHHHSCT
T ss_pred cccccceeecccccchhhhhcccccccccccccccccccccccccccccccceEEEEecc-hhHHHHHHHHHHHHhhChH
Confidence 000000 00000000 00111 121 3455567999999998 9999999999999999999
Q ss_pred -hHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCC-----CCCcccchh-----------------------
Q psy12993 173 -IRPLVLLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQCGT-----SPPVLPNLV----------------------- 223 (243)
Q Consensus 173 -~r~L~~~lK~W~~~~~L~~~~~G~lsSy~l~lmvi~fLq~~~-----~~~iLp~l~----------------------- 223 (243)
+|+|++++|+|++++|||+++.||||||+|++|||+|||+++ .|+++|+++
T Consensus 272 ~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~lP~v~P~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL 351 (468)
T 2b4v_A 272 AARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLL 351 (468)
T ss_dssp THHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHHhcCcCCCCCcccccchhhcccccCCCcccccCccCHHHHH
Confidence 999999999999999999999999999999999999999864 355665444
Q ss_pred ----hhcCCCCCCCcccccccCC
Q psy12993 224 ----AQYPTKFSPNSNIDNIQEG 242 (243)
Q Consensus 224 ----~~~~~~f~p~~~~~~~~~~ 242 (243)
++|+..|+....++++.+|
T Consensus 352 ~~FF~yYg~~Fd~~~~vISir~g 374 (468)
T 2b4v_A 352 HGFFIFYAHHFDYEREVVSLNRN 374 (468)
T ss_dssp HHHHHHHHHSSCTTTEEBCSSSS
T ss_pred HHHHHHHccccCCCCcEEEecCC
Confidence 4566678888888887766
No 8
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=99.96 E-value=9.4e-29 Score=234.34 Aligned_cols=164 Identities=18% Similarity=0.201 Sum_probs=131.0
Q ss_pred CCCcEEEEecccccCCCCCCCCceEEEeecCCcCChhhHHHHhhhcccchhHHHHHHHhhccccccccceeecccCccce
Q psy12993 18 PAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLIHAKVPILKFQDSSFKL 97 (243)
Q Consensus 18 ~p~~~v~~fGS~~tGl~l~~SDiDl~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~ 97 (243)
.++++|++|||+.+|+++|+||||+++..+.. .+..+ .+ ..+.+.|++...
T Consensus 92 ~~~~~v~~FGS~~lG~~~p~SDID~~~v~p~~-~~~~d---ff--------~~l~~~L~~~~~----------------- 142 (514)
T 1q79_A 92 NVGGKIFTFGSYRLGVHTKGADIDALCVAPRH-VDRSD---FF--------TSFYDKLKLQEE----------------- 142 (514)
T ss_dssp TCBCEEEEEHHHHHTCCCTTCCEEEEEEECTT-SCHHH---HT--------THHHHHHHTCTT-----------------
T ss_pred cCCceEEEeeeeccCCCCCCCceeEEEecCCc-CCHHH---HH--------HHHHHHHhcCcc-----------------
Confidence 46899999999999999999999999887653 33221 11 256667765321
Q ss_pred eeecccccccccccccccccccccceeEeeeccCCcceEEEEeCCCCeeEEEEecCc-----------------------
Q psy12993 98 EVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDSSFKLEVDLNCNNV----------------------- 154 (243)
Q Consensus 98 e~~~~~~~~~g~r~~~~~~c~~~~~~~~~~i~~ArVPIik~~~~~~~i~~DIs~~n~----------------------- 154 (243)
+.++..|.+|+||||||++ +|++|||+|++.
T Consensus 143 ------------------------v~~v~~I~~A~VPIIK~~~--~gi~vDL~f~~~~~~~~p~~l~l~~~~~L~~ld~~ 196 (514)
T 1q79_A 143 ------------------------VKDLRAVEEAFVPVIKLCF--DGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIR 196 (514)
T ss_dssp ------------------------EEEEEEETTSSSCEEEEEE--TTEEEEEEEEECSCSSBCTTCCTTCGGGGTTCCHH
T ss_pred ------------------------CceEEEecCCcccEEEEEE--CCeeEEEEEecCCcccCcccccCCchhhhcccchh
Confidence 1244568999999999998 799999999762
Q ss_pred -----hHhHHHHHHHHHHhcCcchHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCCC---Ccccchhhhc
Q psy12993 155 -----VGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTSP---PVLPNLVAQY 226 (243)
Q Consensus 155 -----~g~~ns~ll~~~~~~~p~~r~L~~~lK~W~~~~~L~~~~~G~lsSy~l~lmvi~fLq~~~~~---~iLp~l~~~~ 226 (243)
+|++.+.+|..+...+|.+|.+++++|+||++|||++++.||||||+|++||++++|.++.. .+|-.|+++|
T Consensus 197 ~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~~Ql~P~~s~~~LL~~FF~~y 276 (514)
T 1q79_A 197 AIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVF 276 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 46777888888888889999999999999999999999999999999999999999986321 2566799999
Q ss_pred CCCCCCCcccc
Q psy12993 227 PTKFSPNSNID 237 (243)
Q Consensus 227 ~~~f~p~~~~~ 237 (243)
+. |+...++.
T Consensus 277 ~~-~dw~~pV~ 286 (514)
T 1q79_A 277 SK-WEWPNPVL 286 (514)
T ss_dssp HS-CCTTSCBC
T ss_pred hc-CCCCCCeE
Confidence 86 76666553
No 9
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=99.95 E-value=1.5e-28 Score=233.78 Aligned_cols=162 Identities=18% Similarity=0.206 Sum_probs=131.2
Q ss_pred CcEEEEecccccCCCCCCCCceEEEeecCCcCChhhHHHHhhhcccchhHHHHHHHhhccccccccceeecccCccceee
Q psy12993 20 HVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLIHAKVPILKFQDSSFKLEV 99 (243)
Q Consensus 20 ~~~v~~fGS~~tGl~l~~SDiDl~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~e~ 99 (243)
+++|++|||+.+|+++|+||||+++..+.. .+..+ .+ ..+.+.|++...
T Consensus 81 ~~~V~~FGSy~lG~~~p~SDID~~v~~p~~-~~~~d---ff--------~~l~~~L~~~~~------------------- 129 (530)
T 2hhp_A 81 GGKIFTYGSYRLGVHGPGSDIDTLVVVPKH-VTRED---FF--------TVFDSLLRERKE------------------- 129 (530)
T ss_dssp BCEEEEEHHHHHTCCCTTCCEEEEEEECTT-CCHHH---HH--------HHHHHHHHTCTT-------------------
T ss_pred CceEEEecccccCCCCCCCceeEEEecCCc-CCHHH---HH--------HHHHHHHhcCCC-------------------
Confidence 799999999999999999999999987643 33221 12 255667765321
Q ss_pred ecccccccccccccccccccccceeEeeeccCCcceEEEEeCCCCeeEEEEecCc-------------------------
Q psy12993 100 DLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDSSFKLEVDLNCNNV------------------------- 154 (243)
Q Consensus 100 ~~~~~~~~g~r~~~~~~c~~~~~~~~~~i~~ArVPIik~~~~~~~i~~DIs~~n~------------------------- 154 (243)
+.++..|.+|+||||||+. +|++|||+|++.
T Consensus 130 ----------------------v~~v~~I~~A~VPIIK~~~--~gi~vDL~f~~~~~~~ip~~l~l~~~~~L~~ld~~~~ 185 (530)
T 2hhp_A 130 ----------------------LDEIAPVPDAFVPIIKIKF--SGISIDLICARLDQPQVPLSLTLSDKNLLRNLDEKDL 185 (530)
T ss_dssp ----------------------EEEEEEETTSSSCEEEEEE--TTEEEEEEEEECSSSCBCTTCCSCCGGGGTTCCHHHH
T ss_pred ----------------------CceEEEecCCcccEEEEEE--CCEeeEEEEeccccccCCcccCCCchhhhhccchhhh
Confidence 1244568999999999998 899999999754
Q ss_pred ---hHhHHHHHHHHHHhcCcchHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCCC---CcccchhhhcCC
Q psy12993 155 ---VGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTSP---PVLPNLVAQYPT 228 (243)
Q Consensus 155 ---~g~~ns~ll~~~~~~~p~~r~L~~~lK~W~~~~~L~~~~~G~lsSy~l~lmvi~fLq~~~~~---~iLp~l~~~~~~ 228 (243)
+|++.+.++..+...++.+|.+++++|+||++|||++++.||+|||+|++||+++||.++.. .+|-.|+++|+.
T Consensus 186 ~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQl~P~~s~~~LL~~FF~~y~~ 265 (530)
T 2hhp_A 186 RALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYPNACSAVILNRFFIILSE 265 (530)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Confidence 57888999999988889999999999999999999999999999999999999999986321 357779999996
Q ss_pred CCCCCcccc
Q psy12993 229 KFSPNSNID 237 (243)
Q Consensus 229 ~f~p~~~~~ 237 (243)
|+...++.
T Consensus 266 -~dw~~pV~ 273 (530)
T 2hhp_A 266 -WNWPQPVI 273 (530)
T ss_dssp -CCTTSCEE
T ss_pred -CCCCCceE
Confidence 66665543
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=98.88 E-value=5.9e-08 Score=90.02 Aligned_cols=147 Identities=21% Similarity=0.187 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEecccccCCCCC-CCCceEEEeecCCcCChhhHHHHhhhcccchhHHHHHHHhhcccc
Q psy12993 3 LSKAVEEYVRFTLRDPAHVRLFVVGSTMTGFGLD-SSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLI 81 (243)
Q Consensus 3 l~~~i~~~~~~i~~~~p~~~v~~fGS~~tGl~l~-~SDiDl~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~L~~~~~~ 81 (243)
+.++.+++.+.+.. ++ +++...||++.|.+++ .||||+.+..+.. .+..+ ..... .+.+.+++++.
T Consensus 24 ~~~~~~~I~~~L~~-~~-~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~-~~~e~-l~~~~------l~~~~e~l~~~--- 90 (437)
T 1r89_A 24 GREAEEELRRRLDE-LG-VEYVFVGSYARNTWLKGSLEIDVFLLFPEE-FSKEE-LRERG------LEIGKAVLDSY--- 90 (437)
T ss_dssp HHHHHHHHHHHHHH-HT-CCEEEEHHHHHTCCCTTCCEEEEEEEECTT-SCHHH-HHHHH------HHHHHHHSSSE---
T ss_pred HHHHHHHHHHHHHh-CC-CeEEEeccccCCCcCCCCCCceEEEEcCCC-CCHHH-HHHHH------HHHHHHHHHHh---
Confidence 34555556666665 44 7999999999999997 5999999998654 22221 11110 11122222210
Q ss_pred ccccceeecccCccceeeecccccccccccccccccccccceeEeeeccCCcceEEEEeCCCCeeEEEE--ec------C
Q psy12993 82 HAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDSSFKLEVDLN--CN------N 153 (243)
Q Consensus 82 ~~~~p~~~~~~~~~~~e~~~~~~~~~g~r~~~~~~c~~~~~~~~~~i~~ArVPIik~~~~~~~i~~DIs--~~------n 153 (243)
....|.-|=|.... +|+++||- +. .
T Consensus 91 ---------------------------------------------~~~ya~hpyV~~~f--~g~~vDVVP~y~v~~g~~~ 123 (437)
T 1r89_A 91 ---------------------------------------------EIRYAEHPYVHGVV--KGVEVDVVPCYKLKEPKNI 123 (437)
T ss_dssp ---------------------------------------------EEEESSSEEEEEEE--TTEEEEEEEEECCSSSSCC
T ss_pred ---------------------------------------------hhhccCCceEEEEe--cceEEEEEEEEEccCCccc
Confidence 01112223333222 34555543 11 1
Q ss_pred chHhHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHCCCCCC--CCCCCChHHHHHHHHHH
Q psy12993 154 VVGVRNTHLLYCYAQMDWR-IRPLVLLVKLWAQAHNINDA--KNMTISSYSFTLMVIHF 209 (243)
Q Consensus 154 ~~g~~ns~ll~~~~~~~p~-~r~L~~~lK~W~~~~~L~~~--~~G~lsSy~l~lmvi~f 209 (243)
..++.-|.+-..|...... ++.+++++|+|.+..|+.++ +.+|++||.+=||+++|
T Consensus 124 ~tavDrtp~H~~fv~~r~~~~~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y 182 (437)
T 1r89_A 124 KSAVDRTPFHHKWLEGRIKGKENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY 182 (437)
T ss_dssp CSHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH
T ss_pred cccccCcHHHHHHHHhhhhhhhhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH
Confidence 2455667788888876443 89999999999999999765 57899999999999995
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=98.49 E-value=9.6e-07 Score=79.65 Aligned_cols=52 Identities=21% Similarity=0.294 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCc-chHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhc
Q psy12993 160 THLLYCYAQMDW-RIRPLVLLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQC 212 (243)
Q Consensus 160 s~ll~~~~~~~p-~~r~L~~~lK~W~~~~~L~~~~~G~lsSy~l~lmvi~fLq~ 212 (243)
+.+-..|....+ .++.|++++|+|.+..+.. ...++++||+|-+|+++....
T Consensus 190 ~~~h~~~v~~~~~~~k~lIRLlK~W~~~~~~~-~~~~~~ssy~lELL~~~a~e~ 242 (349)
T 1px5_A 190 TELQRDFLRNRPTKLKSLIRLVKHWYQTCKKT-HGNKLPPQYALELLTVYAWEQ 242 (349)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHHTT-CSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHhhhc-ccCCCCChHHHHHHHHHHHHh
Confidence 455555665544 6899999999999887642 235789999999999986654
No 12
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=98.07 E-value=4.9e-06 Score=63.19 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEecccccCCCCCCCCceEEEeecC
Q psy12993 4 SKAVEEYVRFTLRDPAHVRLFVVGSTMTGFGLDSSDVDMCLGIRP 48 (243)
Q Consensus 4 ~~~i~~~~~~i~~~~p~~~v~~fGS~~tGl~l~~SDiDl~l~~~~ 48 (243)
.+.++++.+.+.+.++...+++|||.+.|-+.++||||+.|....
T Consensus 11 ~~~~~~i~~~l~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 55 (114)
T 1no5_A 11 SEELAIVKTILQQLVPDYTVWAFGSRVKGKAKKYSDLDLAIISEE 55 (114)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEGGGTTTCCCTTCCEEEEEECSS
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeccCCCCCCCCCCeEEEEEeCC
Confidence 456778888888888888999999999999999999999998754
No 13
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=98.00 E-value=4e-06 Score=61.86 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCCCcEEEEecccccCCCCCC-CCceEEEeecC
Q psy12993 6 AVEEYVRFTLRDPAHVRLFVVGSTMTGFGLDS-SDVDMCLGIRP 48 (243)
Q Consensus 6 ~i~~~~~~i~~~~p~~~v~~fGS~~tGl~l~~-SDiDl~l~~~~ 48 (243)
.++++.+.+++.++..++++|||.+.|-+.++ ||||+.+....
T Consensus 3 ~l~~i~~~l~~~~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 3 HMKEIKEITKKDVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HHHHHHHHHHHHCTTCEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred HHHHHHHHHHHHcCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 35677778888888899999999999999999 99999998653
No 14
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=97.78 E-value=8.2e-06 Score=60.35 Aligned_cols=47 Identities=26% Similarity=0.345 Sum_probs=34.4
Q ss_pred CcHHHHHHHHHHHHh---cCCCCcEEEEecccccCCCCCCCCceEEEeecC
Q psy12993 1 MTLSKAVEEYVRFTL---RDPAHVRLFVVGSTMTGFGLDSSDVDMCLGIRP 48 (243)
Q Consensus 1 ~~l~~~i~~~~~~i~---~~~p~~~v~~fGS~~tGl~l~~SDiDl~l~~~~ 48 (243)
|+. +.++++.+.+. +.++-..+++|||.+.|-+.++||||+.+...+
T Consensus 4 m~~-~~l~~l~~~i~~l~~~~~v~~v~LFGS~arG~~~~~SDiDl~V~~~~ 53 (98)
T 1wot_A 4 MDL-ETLRARREAVLSLCARHGAVRVRVFGSVARGEAREDSDLDLLVAFEE 53 (98)
T ss_dssp CCH-HHHHHHHHHHHHHHHHHTCSSCEECSHHHHTCCCTTCCCEEEECCCS
T ss_pred CCH-HHHHHHHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCEEEEEEeCC
Confidence 444 44444444333 345667899999999999999999999997653
No 15
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=97.67 E-value=3.5e-05 Score=58.40 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCCC-cEEEEecccccCCCCCCCCceEEEeecC
Q psy12993 5 KAVEEYVRFTLRDPAH-VRLFVVGSTMTGFGLDSSDVDMCLGIRP 48 (243)
Q Consensus 5 ~~i~~~~~~i~~~~p~-~~v~~fGS~~tGl~l~~SDiDl~l~~~~ 48 (243)
+.++++.+.+.+.+|+ ..+.+|||.+.|-+.++||||+.|....
T Consensus 17 ~~l~~~~~~l~~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 17 KLAKEIVEEVASSFPNLEEVYIFGSRARGDYLDTSDIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEESHHHHSCCCTTCCEEEEEEESS
T ss_pred HHHHHHHHHHHHHcCCccEEEEEeeeecCCCCCCCCEEEEEEecC
Confidence 3344444455556766 5899999999999999999999998754
No 16
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=97.44 E-value=9.9e-05 Score=63.43 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHhcCCCC-cEEEEecccccCCCCCCCCceEEEeecCC
Q psy12993 2 TLSKAVEEYVRFTLRDPAH-VRLFVVGSTMTGFGLDSSDVDMCLGIRPY 49 (243)
Q Consensus 2 ~l~~~i~~~~~~i~~~~p~-~~v~~fGS~~tGl~l~~SDiDl~l~~~~~ 49 (243)
.+++.++++.+.+.+.+++ .+|.+|||.+.|-+.+.||||+.+.....
T Consensus 21 ~Vq~eL~~ive~L~~~~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~~ 69 (272)
T 4ebj_A 21 GVQHTIARWVDRLREEYADAVAILLKGSYARGDAATWSDIDFDVLVSTQ 69 (272)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEeceeCCCCCCCCceEEEEEecCC
Confidence 3678888999999888886 68999999999999999999999998654
No 17
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=96.87 E-value=0.00053 Score=58.94 Aligned_cols=45 Identities=22% Similarity=0.056 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCCC--CcEEEEecccccCCCCCCCCceEEEeecC
Q psy12993 4 SKAVEEYVRFTLRDPA--HVRLFVVGSTMTGFGLDSSDVDMCLGIRP 48 (243)
Q Consensus 4 ~~~i~~~~~~i~~~~p--~~~v~~fGS~~tGl~l~~SDiDl~l~~~~ 48 (243)
.+.++++.+.+.+.++ -..+.+|||.+.|-+.++||||+.|...+
T Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~lfGS~arg~~~~~SDiD~~v~~~~ 59 (253)
T 1kny_A 13 MKIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMST 59 (253)
T ss_dssp HHHHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCCCCCeeEEEEecC
Confidence 3455566666666677 57899999999999999999999998754
No 18
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=95.55 E-value=0.016 Score=50.74 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHHHHhcCCCCcEEEEecccccCCCCCCCCceEEEeecC
Q psy12993 1 MTLSKAVEEYVRFTLRDPAHVRLFVVGSTMTGFGLDSSDVDMCLGIRP 48 (243)
Q Consensus 1 ~~l~~~i~~~~~~i~~~~p~~~v~~fGS~~tGl~l~~SDiDl~l~~~~ 48 (243)
||-++.++.+.+..++.-.=..|..+||.++|-....||+|+++...+
T Consensus 22 ~~~~e~l~~I~~~~~~d~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~ 69 (287)
T 3jz0_A 22 LKQKELIANVKNLTESDERITACMMYGSFTKGEGDQYSDIEFYIFLKH 69 (287)
T ss_dssp CHHHHHHHHHHHHHHHCTTEEEEEECSGGGTTCCCTTCCEEEEEEECG
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEEEECCccCCCCCCccceeEEEEEcC
Confidence 567778888888877655556889999999999999999999999865
No 19
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=95.49 E-value=0.18 Score=45.28 Aligned_cols=146 Identities=16% Similarity=0.195 Sum_probs=85.5
Q ss_pred cEEEEecccccCCCCCC-CCceEEEeecCCcCChhhHHHHhhhcccchhHHHHHHHhhccccccccceeecccCccceee
Q psy12993 21 VRLFVVGSTMTGFGLDS-SDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLIHAKVPILKFQDSSFKLEV 99 (243)
Q Consensus 21 ~~v~~fGS~~tGl~l~~-SDiDl~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~e~ 99 (243)
..|...||++.|+.+.+ -|+|+++....-+ ..++.+.|. +++.+.|+..+- + -++..
T Consensus 74 ~~V~rVGs~aKgtll~G~~~~dlVvl~k~lP--T~e~v~~L~-------~kV~e~L~~q~~--~--e~~~~--------- 131 (364)
T 4at7_A 74 EEVRQVGSYKKGTMTTGHNVADLVVILKILP--TLEAVAALG-------NKVVESLRAQDP--S--EVLTM--------- 131 (364)
T ss_dssp EEEEEEHHHHHTCCCTTCCEEEEEEEESSCC--BHHHHHHHH-------HHHHHHHHHHCT--T--SCCEE---------
T ss_pred ceeEEeccccCCceecCCCceeEEEEecCCC--CHHHHHHHH-------HHHHHHhhhhcc--c--cceee---------
Confidence 47899999999999875 4899999987643 234444443 366777765420 0 00000
Q ss_pred ecccccccccccccccccccccceeEeeeccCC--c--------ceEEEEeCCCCeeEEEEecCchHhHHHHHHHHHHhc
Q psy12993 100 DLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAK--V--------PILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQM 169 (243)
Q Consensus 100 ~~~~~~~~g~r~~~~~~c~~~~~~~~~~i~~Ar--V--------PIik~~~~~~~i~~DIs~~n~~g~~ns~ll~~~~~~ 169 (243)
+.+..| ..|.++. | |.++=.++..-++-..+.....+++.++|+.+-. .
T Consensus 132 ---~~~e~~-----------------~~I~~~~~~v~i~It~tsp~lrk~dp~~~Ld~~~cl~aLaalRhAkWfq~na-~ 190 (364)
T 4at7_A 132 ---LTNETG-----------------FEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWFEENA-S 190 (364)
T ss_dssp ---EEETTE-----------------EEEECSSCEEEEEEEECHHHHHTCCTTTBCCHHHHHHHHHHHHHHHHHHHHC-C
T ss_pred ---ccCcce-----------------EEEecCCCcEEEEEEeCChhhccCChhHhcCHHHHHHHHHHhhhhHHHHhhc-c
Confidence 000000 1111111 1 1111112233344444445566788888887533 3
Q ss_pred CcchHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcC
Q psy12993 170 DWRIRPLVLLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQCG 213 (243)
Q Consensus 170 ~p~~r~L~~~lK~W~~~~~L~~~~~G~lsSy~l~lmvi~fLq~~ 213 (243)
+..++.+++++|...++. +..+.|+.|++-+++.+-+-..
T Consensus 191 ~s~v~~lIRIlkDlc~R~----~~w~pL~~waLELL~~~Ai~s~ 230 (364)
T 4at7_A 191 QSTVKVLIRLLKDLRIRF----PGFEPLTPWILDLLGHYAVMNN 230 (364)
T ss_dssp CHHHHHHHHHHHHHHHHC----GGGTTCCHHHHHHHHHHHHHSS
T ss_pred ccccceeehhhHHHHHhc----CCcCCCCHHHHHHHHHHHHhcC
Confidence 566889999999954443 1236899999999999888763
No 20
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=82.86 E-value=5.4 Score=35.23 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCCcEEEEecccccCCCCCCCCceEEEeecC
Q psy12993 7 VEEYVRFTLRDPAHVRLFVVGSTMTGFGLDSSDVDMCLGIRP 48 (243)
Q Consensus 7 i~~~~~~i~~~~p~~~v~~fGS~~tGl~l~~SDiDl~l~~~~ 48 (243)
-+.+.+.+...-|.+++.+-||+.=|-.+ .+|||+.+..++
T Consensus 159 a~~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~ 199 (335)
T 2fmp_A 159 QDIVLNEVKKVDSEYIATVCGSFRRGAES-SGDMDVLLTHPS 199 (335)
T ss_dssp HHHHHHHHHHHCTTCEEEECHHHHTTCSE-ESSEEEEEECTT
T ss_pred HHHHHHHHHhcCCCcEEEeccccccccCc-cCCeEEEEECCC
Confidence 34455666677899999999999988776 679999998654
No 21
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=76.28 E-value=17 Score=32.03 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCCCcEEEEecccccCCCCCCCCceEEEeecCCcCChhhHHHHhhhcccchhHHHHHHHhhcccc
Q psy12993 7 VEEYVRFTLRDPAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLI 81 (243)
Q Consensus 7 i~~~~~~i~~~~p~~~v~~fGS~~tGl~l~~SDiDl~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~L~~~~~~ 81 (243)
-+.+.+.+...-|.+++.+-||+.=|-.+ .+|||+.+..++..... ..+ ..+.+.|.+.+++
T Consensus 156 a~~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~----~ll--------~~v~~~l~~~~~i 217 (335)
T 2bcq_A 156 EQTVQKAAQAFNSGLLCVACGSYRRGKAT-CGDVDVLITHPDGRSHR----GIF--------SRLLDSLRQEGFL 217 (335)
T ss_dssp HHHHHHHHHTTCTTCEEEECHHHHTTCSE-ESSEEEEEECTTSSTTT----TCH--------HHHHHHHHHTTCE
T ss_pred HHHHHHHHHhcCCCcEEEEccccccCCCC-CCCeEEEEecCCchhhh----hHH--------HHHHHHHHhCCch
Confidence 34556677788899999999999988776 66999999865432111 111 2566777776654
No 22
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=75.61 E-value=3.2 Score=36.04 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecccccCC--CCCCCCceEEEeecC
Q psy12993 5 KAVEEYVRFTLRDPAHVRLFVVGSTMTGF--GLDSSDVDMCLGIRP 48 (243)
Q Consensus 5 ~~i~~~~~~i~~~~p~~~v~~fGS~~tGl--~l~~SDiDl~l~~~~ 48 (243)
..++.+.+..+..-.=..|..-||.+++- .-.-||+||++...+
T Consensus 8 em~~~i~~~a~~d~rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d 53 (294)
T 2pbe_A 8 EMMDIFLDFALNDERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTD 53 (294)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEC------------CCCEEEEEEESC
T ss_pred HHHHHHHHHHcCCcCEEEEEEecCCCCCCCCCCCcccceEEEEEcC
Confidence 45566666655443334788999999955 889999999999853
No 23
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=63.39 E-value=0.31 Score=43.05 Aligned_cols=104 Identities=18% Similarity=0.332 Sum_probs=60.0
Q ss_pred ccccceeecccCccceeeecccccccccccccccccccccceeEeeeccCCcceEEEEeCCCCeeEEEEecCchHhHHHH
Q psy12993 82 HAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCYAQKIFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTH 161 (243)
Q Consensus 82 ~~~~p~~~~~~~~~~~e~~~~~~~~~g~r~~~~~~c~~~~~~~~~~i~~ArVPIik~~~~~~~i~~DIs~~n~~g~~ns~ 161 (243)
+++||++++.+....+++|+++++.-|+++.++...+... .+....-+=+||..-+..|+. |-..+...|..-+-
T Consensus 117 ~ArVPIIk~~~~~~gi~vDIs~~~~~g~~~t~li~~~~~~----~~~~r~lv~~iK~wak~r~l~-~~~~G~lssy~l~l 191 (323)
T 3nyb_A 117 KARVPIIKFVEPHSGIHIAVSFERTNGIEAAKLIREWLDD----TPGLRELVLIVKQFLHARRLN-NVHTGGLGGFSIIC 191 (323)
T ss_dssp SSSCEEEEEEETTTTEEEEEESSCSSTTHHHHHHHHHHHS----CTTHHHHHHHHHHHHHHTTCS-CGGGTCCCHHHHHH
T ss_pred ccCCCEEEEEEcCCCceEEEEecCcHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHcCCC-CccCCCcCHHHHHH
Confidence 7899999988766678899999988888887655443211 000000011223332334442 11122234555566
Q ss_pred HHHHHHhcCcchH------------HHHHHHHHHHHHCCCC
Q psy12993 162 LLYCYAQMDWRIR------------PLVLLVKLWAQAHNIN 190 (243)
Q Consensus 162 ll~~~~~~~p~~r------------~L~~~lK~W~~~~~L~ 190 (243)
++-.|++.+|... -|.-++++|+...+..
T Consensus 192 mvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~~~Fd~~ 232 (323)
T 3nyb_A 192 LVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYD 232 (323)
T ss_dssp HHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHhCCccCcccCCccccHHHHHHHHHHHhccccCCC
Confidence 7778888888653 4666677777665554
No 24
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=63.02 E-value=70 Score=29.99 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCCcEEEEecccccCCCCCCCCceEEEeec
Q psy12993 7 VEEYVRFTLRDPAHVRLFVVGSTMTGFGLDSSDVDMCLGIR 47 (243)
Q Consensus 7 i~~~~~~i~~~~p~~~v~~fGS~~tGl~l~~SDiDl~l~~~ 47 (243)
-+.+.+.+...-|.+++.+-||+.=|-.+ ..|||+.+..+
T Consensus 167 ~~~i~~~l~~~~~~~~~~~~Gs~RRgke~-~gDiD~li~~~ 206 (575)
T 3b0x_A 167 ARSLLEAIRALPGVERAELCGSARRYKDT-VGDLDFLVASR 206 (575)
T ss_dssp HHHHHHHHHTSTTCCEEEECHHHHTTCSE-ESSEEEEEECS
T ss_pred HHHHHHHHHhCCCCcEEEEccccccCCCc-cCCeEEEEeCC
Confidence 34555677777788999999999988765 45999998754
No 25
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=60.94 E-value=8.6 Score=34.69 Aligned_cols=59 Identities=5% Similarity=-0.014 Sum_probs=37.5
Q ss_pred EecCchHhHHHHHHHHHHhcCcchHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhc
Q psy12993 150 NCNNVVGVRNTHLLYCYAQMDWRIRPLVLLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQC 212 (243)
Q Consensus 150 s~~n~~g~~ns~ll~~~~~~~p~~r~L~~~lK~W~~~~~L~~~~~G~lsSy~l~lmvi~fLq~ 212 (243)
+.+...+++.++|+.+-+.--+....+++++|...+.. . ..+.|+.|++-+|+.+-+-.
T Consensus 205 cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~-~---~~~pL~~waLELL~~~ai~s 263 (383)
T 4at7_B 205 CLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV-P---TWGPLRGWPLELLCEKSIGT 263 (383)
T ss_dssp HHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHC-G---GGGGGTTHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhc-C---CcCCCcHhHHHHHHHHHhhC
Confidence 33333445555554432222345788999999955443 1 23579999999999988765
No 26
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=59.45 E-value=8.9 Score=30.70 Aligned_cols=29 Identities=21% Similarity=0.176 Sum_probs=24.1
Q ss_pred CCCcEEEEecccccCCCCCCCCceEEEeec
Q psy12993 18 PAHVRLFVVGSTMTGFGLDSSDVDMCLGIR 47 (243)
Q Consensus 18 ~p~~~v~~fGS~~tGl~l~~SDiDl~l~~~ 47 (243)
+|++++.+-||+.=|-.+- .|||+.+..+
T Consensus 29 ~~g~~v~iaGS~RRgket~-gDiDiLit~~ 57 (174)
T 1jaj_A 29 ILSKNIVAVGSLRREEKML-NDVDLLIIVP 57 (174)
T ss_dssp ECTTTEEEEEHHHHTCSEE-CCEEEEEEES
T ss_pred CCCcEEEEeccccCCCCCC-CCEEEEEecC
Confidence 4889999999999887664 4999999864
No 27
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=58.48 E-value=16 Score=32.50 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCCCcEEEEecccccCCCCCCCCceEEEeecCCcCChhhHHHHhhhcccchhHHHHHHHhhcccc
Q psy12993 7 VEEYVRFTLRDPAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLI 81 (243)
Q Consensus 7 i~~~~~~i~~~~p~~~v~~fGS~~tGl~l~~SDiDl~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~L~~~~~~ 81 (243)
-+.+.+.+...-|.+++.+-||+.=|-.+ .+||||.+..++..... ..+ ..+.+.|.+.+++
T Consensus 163 ~~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~----~ll--------~~v~~~L~~~~~i 224 (360)
T 2ihm_A 163 QQLIEAAVRQTLPGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQEV----GLL--------PKVMSCLQSQGLV 224 (360)
T ss_dssp HHHHHHHHHTTCTTCEEEECHHHHTTCSE-ESEEEEEEECSSTTTTT----THH--------HHHHHHHHHTTCE
T ss_pred HHHHHHHHHhcCCCcEEEEccccccCCCc-cCCeEEEEecCChhhhh----hHH--------HHHHHHHHhCCCe
Confidence 34555677778899999999999988876 66999999865432211 122 2566777776654
No 28
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=48.80 E-value=36 Score=30.51 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCCCcEEEEecccccCCCCCCCCceEEEeecCCcCChhhHHHHhhhcccchhHHHHHHHhhcccc
Q psy12993 8 EEYVRFTLRDPAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADLI 81 (243)
Q Consensus 8 ~~~~~~i~~~~p~~~v~~fGS~~tGl~l~~SDiDl~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~L~~~~~~ 81 (243)
+.+.+.+...-|.+++.+-||+.=|-.+ ..||||.+..++.. .......+ ..+.+.|.+.+++
T Consensus 184 ~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~~--~~~~~~ll--------~~vv~~L~~~~~i 246 (381)
T 1jms_A 184 MLVKEAVVTFLPDALVTMTGGFRRGKMT-GHDVDFLITSPEAT--EDEEQQLL--------HKVTDFWKQQGLL 246 (381)
T ss_dssp HHHHHHHHHHCTTCEEEECHHHHTTCSC-BSSEEEEEECTTCC--HHHHHHHH--------HHHHHHHHHTTCE
T ss_pred HHHHHHHHhcCCCcEEEEccccccCCCC-cCCeEEEEeCCCcc--ccchhhHH--------HHHHHHHHhCCCc
Confidence 4445566667899999999999988776 56999999865432 11111122 2566777777664
No 29
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=43.09 E-value=22 Score=28.09 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEeccccc---CCCCCCCCceEEE
Q psy12993 3 LSKAVEEYVRFTLRDPAHVRLFVVGSTMT---GFGLDSSDVDMCL 44 (243)
Q Consensus 3 l~~~i~~~~~~i~~~~p~~~v~~fGS~~t---Gl~l~~SDiDl~l 44 (243)
+.+++.++.+.+... ++.-.+-||++- |...+.-||||.+
T Consensus 18 ~~~~L~~i~~~L~~~--~V~~~l~Gs~Al~~~G~~~~~~DIDi~i 60 (169)
T 2fcl_A 18 YLRVLRXIYDRLXNE--XVNWVVTGSLSFALQGVPVEVHDIDIQT 60 (169)
T ss_dssp HHHHHHHHHHHHTTS--SCCEEEEHHHHHHHTTCCCCCCSEEEEE
T ss_pred HHHHHHHHHHHHHhc--CCCEEEeHHHHHHHcCCCCCCCccEEEe
Confidence 556666776666655 788889999985 8888999999998
No 30
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=41.20 E-value=72 Score=28.95 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=25.5
Q ss_pred CcEEEEecccccCCCCCCCCceEEEeecC
Q psy12993 20 HVRLFVVGSTMTGFGLDSSDVDMCLGIRP 48 (243)
Q Consensus 20 ~~~v~~fGS~~tGl~l~~SDiDl~l~~~~ 48 (243)
+..|.-+||.--|=-.++||+|+++..++
T Consensus 154 ~~aviamGk~Gr~EL~~~SDiDli~l~~~ 182 (440)
T 1v4a_A 154 PLLILGMGKLGGGELNFSSDIDLIFAWPE 182 (440)
T ss_dssp CCEEEECHHHHTTCCCSSCCEEEEEEECC
T ss_pred CEEEEEeccccccCcCCCCCcceEEEeCC
Confidence 47899999999999999999999988754
No 31
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=37.40 E-value=27 Score=22.61 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=21.4
Q ss_pred HHHHHHHHHHCCCCCCCCCCCChHH
Q psy12993 177 VLLVKLWAQAHNINDAKNMTISSYS 201 (243)
Q Consensus 177 ~~~lK~W~~~~~L~~~~~G~lsSy~ 201 (243)
..-|+.|++..|+.-+.+|-++.=.
T Consensus 15 ~~aIR~WAr~nG~~VsdRGRIp~~V 39 (55)
T 2kng_A 15 SAAIREWARRNGHNVSTRGRIPADV 39 (55)
T ss_dssp HHHHHHHHHHTTCCCCSSSCCCHHH
T ss_pred hHHHHHHHHHcCCcCCCCCCCCHHH
Confidence 5679999999999988899988743
No 32
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=35.52 E-value=27 Score=30.27 Aligned_cols=29 Identities=17% Similarity=-0.122 Sum_probs=25.1
Q ss_pred cEEEEecccccCCCCCCCCceEEEeecCC
Q psy12993 21 VRLFVVGSTMTGFGLDSSDVDMCLGIRPY 49 (243)
Q Consensus 21 ~~v~~fGS~~tGl~l~~SDiDl~l~~~~~ 49 (243)
+.+..|||..+|=-+.+||+|+.|+....
T Consensus 21 gvi~i~~~~~~~~l~d~fDi~LlVI~~~~ 49 (290)
T 3c18_A 21 GIIAVEKRQPRDSLTDQFDVLLLVITRDP 49 (290)
T ss_dssp EEEEEECSSTTCGGGTTSSEEEEEEECCT
T ss_pred EEEEEcCCCCCCCcccccceEEEEEecCC
Confidence 45666999999999999999999997654
No 33
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=28.42 E-value=90 Score=28.92 Aligned_cols=29 Identities=17% Similarity=-0.156 Sum_probs=25.7
Q ss_pred CcEEEEecccccCCCCCCCCceEEEeecC
Q psy12993 20 HVRLFVVGSTMTGFGLDSSDVDMCLGIRP 48 (243)
Q Consensus 20 ~~~v~~fGS~~tGl~l~~SDiDl~l~~~~ 48 (243)
+..|.-+|+.--+=-..+||+|+++...+
T Consensus 234 ~~aviamGklGg~EL~~~SDiDlifv~~~ 262 (498)
T 3k7d_A 234 GFAVVGYGKLGGWELGYSSDLDLIFLHDC 262 (498)
T ss_dssp SEEEEEEHHHHTTCCCTTCCEEEEEEECC
T ss_pred CEEEEeeccccccccCcccccceeeeecC
Confidence 47899999999998899999999998764
No 34
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=22.22 E-value=16 Score=32.91 Aligned_cols=40 Identities=28% Similarity=0.586 Sum_probs=31.7
Q ss_pred cccccccceeecccCccceeeecccccccccccccccccc
Q psy12993 79 DLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCY 118 (243)
Q Consensus 79 ~~~~~~~p~~~~~~~~~~~e~~~~~~~~~g~r~~~~~~c~ 118 (243)
..++++|||+++.+....+++|++++|.-|+++.++..++
T Consensus 108 ~ii~ARVPIIKf~d~~tgi~~DIS~nn~~gi~ns~ll~~y 147 (384)
T 3hj4_A 108 RYIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAI 147 (384)
T ss_dssp EEECSSSCEEEEECTTTCCEEEEEECCHHHHHHHHHHHHH
T ss_pred eecCcccCEEEEEEcCCCeEEEEEecccchHHHHHHHHHH
Confidence 3569999999988876678999999998888876655443
No 35
>3nku_A DRRA, SIDM; posttranslational modification, ampylation, adenylylation, R RAB1, vesicular transport, protein transport; HET: MSE PGE; 2.10A {Legionella pneumophila subsp}
Probab=21.50 E-value=1.2e+02 Score=23.44 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=19.7
Q ss_pred CCCCcEEEEecccccCCCCCCCCceEEEeecCC
Q psy12993 17 DPAHVRLFVVGSTMTGFGLDSSDVDMCLGIRPY 49 (243)
Q Consensus 17 ~~p~~~v~~fGS~~tGl~l~~SDiDl~l~~~~~ 49 (243)
-..+..|+--||.+..-++.-||+|-.++..+.
T Consensus 83 mpkdmevhfagslakaqateysdldafvivknd 115 (213)
T 3nku_A 83 MPKDMEVHFAGSLAKAQATEYSDLDAFVIVKND 115 (213)
T ss_dssp CCTTCEEEEECC---------CCCEEEEECSST
T ss_pred CCccceehhhhhHHHhhcccccccceEEEecch
Confidence 346789999999999999999999998887654
No 36
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=21.03 E-value=20 Score=33.14 Aligned_cols=40 Identities=25% Similarity=0.632 Sum_probs=33.4
Q ss_pred cccccccceeecccCccceeeecccccccccccccccccc
Q psy12993 79 DLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHLLYCY 118 (243)
Q Consensus 79 ~~~~~~~p~~~~~~~~~~~e~~~~~~~~~g~r~~~~~~c~ 118 (243)
...+++|||+++.+....+++|++++|..|+++.++..++
T Consensus 252 ~I~~ARVPIIKf~~~~tgi~~DIS~nn~~gi~ns~ll~~y 291 (464)
T 3pq1_A 252 KILNARCPLVRFSHQASGFQCALTTNNRIALTSSELLYIY 291 (464)
T ss_dssp EECSSSSCEEEEEETTTCCEEEEECSCTTHHHHHHHHHHH
T ss_pred EecCCCCCEEEEEEcCCCeEEEEecCCCcHHHHHHHHHHH
Confidence 3568999999998876778999999999999887766555
Done!