RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12993
         (243 letters)



>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl
           transferase 2, TUTase 2, RET2 {Trypanosoma brucei
           [TaxId: 5691]}
          Length = 183

 Score = 79.1 bits (194), Expect = 8e-19
 Identities = 13/67 (19%), Positives = 25/67 (37%)

Query: 172 RIRPLVLLVKLWAQAHNINDAKNMTISSYSFTLMVIHFLQCGTSPPVLPNLVAQYPTKFS 231
             R   + VK W +A N+       ++SY+ T+M I++L        +      +P    
Sbjct: 3   AARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLP 62

Query: 232 PNSNIDN 238
              +   
Sbjct: 63  RYPDFSP 69


>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal
           domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 197

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 13/110 (11%)

Query: 19  AHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLC-VLETSDVDMCLEIFKK 77
           A  ++F  GS   G     SD+D  + + P    R     V   +L   +     EI   
Sbjct: 76  AGGKIFTYGSYRLGVHGPGSDIDTLV-VVPKHVTREDFFTVFDSLLR--ERKELDEIAP- 131

Query: 78  ADLIHAKVPILKFQ------DSSFKLEVDLNCNNVVGVRNTHLLYCYAQK 121
             +  A VPI+K +                     + + + +LL    +K
Sbjct: 132 --VPDAFVPIIKIKFSGISIALICARLDQPQVPLSLTLSDKNLLRNLDEK 179


>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal
           domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 196

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 25/116 (21%)

Query: 19  AHVRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKA 78
              ++F  GS   G     +D+D    + P   DR                   +  K  
Sbjct: 75  VGGKIFTFGSYRLGVHTKGADIDALC-VAPRHVDRSDFFTSF-----------YDKLKLQ 122

Query: 79  DLI-------HAKVPILKFQ------DSSFKLEVDLNCNNVVGVRNTHLLYCYAQK 121
           + +        A VP++K        D  F           + +R+  LL     +
Sbjct: 123 EEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIR 178



 Score = 29.1 bits (65), Expect = 0.34
 Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 6/49 (12%)

Query: 130 HAKVPILKFQ------DSSFKLEVDLNCNNVVGVRNTHLLYCYAQMDWR 172
            A VP++K        D  F           + +R+  LL        R
Sbjct: 133 EAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIR 181


>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
           putida [TaxId: 303]}
          Length = 345

 Score = 27.9 bits (60), Expect = 1.1
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 26  VGSTMTGFGLDSSDVDMCL--GIRPYEFDRGQ-AIRVLCVLETS--DVDMCLEIFKKA 78
             + +    LDS+ +D  L  G   Y    G   +R +    T+  DVD  L   + A
Sbjct: 287 TEANILFCRLDSAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA 344


>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980
           {Cryptosporidium parvum [TaxId: 5807]}
          Length = 223

 Score = 26.0 bits (57), Expect = 4.5
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 105 NVVGVRNTHL--LYCYAQKIFKKADLIHAKVPILKFQDSSFKLEVDLNCNNVVGVRNTHL 162
           N V      L  +    +K+ K+  L +  + +++     F+  + L   +V+ + + +L
Sbjct: 28  NRVTSIRNSLKSIKSQEEKLRKEKSLNNEFIQVIEDIKRDFEESILLESEDVIRIIDDNL 87

Query: 163 L 163
           L
Sbjct: 88  L 88


>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 208

 Score = 25.0 bits (54), Expect = 7.4
 Identities = 2/22 (9%), Positives = 10/22 (45%)

Query: 2   TLSKAVEEYVRFTLRDPAHVRL 23
           T+ + +    +  + D + ++ 
Sbjct: 185 TMPREILNLAKKYMGDYSFIKA 206


>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
           DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 206

 Score = 24.9 bits (53), Expect = 7.4
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 2   TLSKAVEEYVRFTLRDPAHVRL 23
           T    V+E++   L  P  + L
Sbjct: 183 TFPLTVKEFMVKHLHKPYEINL 204


>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase
          (KNTase), N-terminal domain {Staphylococcus aureus
          [TaxId: 1280]}
          Length = 125

 Score = 24.5 bits (53), Expect = 8.9
 Identities = 9/68 (13%), Positives = 19/68 (27%)

Query: 21 VRLFVVGSTMTGFGLDSSDVDMCLGIRPYEFDRGQAIRVLCVLETSDVDMCLEIFKKADL 80
            + V GS         SD++M   +   E +              +      +   A  
Sbjct: 32 KAIGVYGSLGRQTDGPYSDIEMMCVMSTEEAEFSHEWTTGEWKVEVNFYSEEILLDYASQ 91

Query: 81 IHAKVPIL 88
          + +  P+ 
Sbjct: 92 VESDWPLT 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 888,880
Number of extensions: 38576
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 21
Length of query: 243
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,268,006
Effective search space: 202880960
Effective search space used: 202880960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.1 bits)