BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12999
(191 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D8B3|CHM4B_MOUSE Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b
PE=2 SV=2
Length = 224
Score = 196 bits (498), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 120/192 (62%), Positives = 147/192 (76%), Gaps = 5/192 (2%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
ML KKQEFLEKKI +E+ A+ +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct: 35 MLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 94
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
ALE ANTNT VL M AA A+KAAH +MD+++V ++M DIA+QQ++A+EIS AIS PV
Sbjct: 95 ALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154
Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTP-GGELPEIPSTAPKDKPKEKASTKERSV 179
FG + DEDEL ELE LEQEELDK+LL++S P LP +PS A KP + K+
Sbjct: 155 FGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSVALPSKP----AKKKEEE 210
Query: 180 EDEIRELEAWAS 191
+D+++ELE WA
Sbjct: 211 DDDMKELENWAG 222
>sp|Q9H444|CHM4B_HUMAN Charged multivesicular body protein 4b OS=Homo sapiens GN=CHMP4B
PE=1 SV=1
Length = 224
Score = 195 bits (496), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/192 (62%), Positives = 147/192 (76%), Gaps = 5/192 (2%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
ML KKQEFLEKKI +E+ A+ +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct: 35 MLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 94
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
ALE ANTNT VL M AA A+KAAH +MD+++V ++M DIA+QQ++A+EIS AIS PV
Sbjct: 95 ALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154
Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTP-GGELPEIPSTAPKDKPKEKASTKERSV 179
FG + DEDEL ELE LEQEELDK+LL++S P LP +PS A KP + K+
Sbjct: 155 FGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSIALPSKP----AKKKEEE 210
Query: 180 EDEIRELEAWAS 191
+D+++ELE WA
Sbjct: 211 DDDMKELENWAG 222
>sp|Q5XGW6|CHM4B_XENLA Charged multivesicular body protein 4b OS=Xenopus laevis GN=chmp4b
PE=2 SV=1
Length = 222
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/192 (62%), Positives = 148/192 (77%), Gaps = 4/192 (2%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
ML KKQEFLEKKI +E+ A+ +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct: 33 MLAKKQEFLEKKIEQELVTAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 92
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
ALE ANTNT VL M AA A+KAAH +MD+ +V ++M DIA+QQ++A+EIS+AIS PV
Sbjct: 93 ALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVG 152
Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTP-GGELPEIPSTAPKDKPKEKASTKERSV 179
FG D DEDEL ELE LEQEELDK+LL++ P LP +P+ + KP +K K+
Sbjct: 153 FGEDFDEDELMAELEELEQEELDKNLLEVQGPETVPLPNVPAASLPAKPVKK---KQEED 209
Query: 180 EDEIRELEAWAS 191
+D++RELE WA+
Sbjct: 210 DDDMRELENWAT 221
>sp|Q6GL11|CHM4B_XENTR Charged multivesicular body protein 4b OS=Xenopus tropicalis
GN=chmp4b PE=2 SV=1
Length = 222
Score = 194 bits (494), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/192 (62%), Positives = 147/192 (76%), Gaps = 4/192 (2%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
ML KKQEFLEKKI +E+ A+ +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct: 33 MLTKKQEFLEKKIEQELVTAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 92
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
ALE ANTNT VL M AA A+KAAH +MD+ +V ++M DIA+QQ++A+EIS+AIS PV
Sbjct: 93 ALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVG 152
Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTP-GGELPEIPSTAPKDKPKEKASTKERSV 179
FG D DEDEL ELE LEQEELDK+LL++ P LP +P+ KP +K K+
Sbjct: 153 FGEDFDEDELMAELEELEQEELDKNLLEVQGPETVPLPNVPAAVLPAKPVKK---KQEED 209
Query: 180 EDEIRELEAWAS 191
+D++RELE WA+
Sbjct: 210 DDDMRELENWAT 221
>sp|Q6IQ73|CHM4C_DANRE Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c
PE=2 SV=1
Length = 224
Score = 191 bits (484), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 120/191 (62%), Positives = 144/191 (75%), Gaps = 1/191 (0%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
ML KKQ+FLEKKI E+ IA+ NGTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct: 33 MLAKKQDFLEKKIDAELLIAKKNGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 92
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
ALE ANTNT VL M AA A+K AH++MD+++V D+M DI EQQ++A+EIS+AIS PV
Sbjct: 93 ALENANTNTEVLKNMGFAAKAMKTAHENMDIDKVDDLMQDITEQQELAQEISDAISRPVG 152
Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTP-GGELPEIPSTAPKDKPKEKASTKERSV 179
FG + DEDEL ELE LEQEELDKDLL++S P LP +PS K ++
Sbjct: 153 FGEEFDEDELMAELEELEQEELDKDLLQISGPEDVPLPNVPSNPLPKKTAVAQKKRQEED 212
Query: 180 EDEIRELEAWA 190
ED++ EL+AWA
Sbjct: 213 EDDMEELKAWA 223
>sp|Q5ZHP5|CHM4B_CHICK Charged multivesicular body protein 4b OS=Gallus gallus GN=CHMP4B
PE=2 SV=1
Length = 227
Score = 187 bits (475), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 114/169 (67%), Positives = 133/169 (78%), Gaps = 1/169 (0%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
ML KKQEFLEKKI +E+ AR +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct: 37 MLSKKQEFLEKKIEQELAAARKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 96
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
ALE ANTNT VL M AA A+KAAH +MD+++V ++M DIAEQQ++A EIS AIS PV
Sbjct: 97 ALENANTNTEVLKNMGFAAKAMKAAHDNMDIDKVDELMQDIAEQQELADEISTAISKPVG 156
Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTP-GGELPEIPSTAPKDKP 168
FG + DEDEL ELE LEQEELDK+LL++S P LP +PS + KP
Sbjct: 157 FGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSISIPSKP 205
>sp|Q7ZVC4|CHM4B_DANRE Charged multivesicular body protein 4b OS=Danio rerio GN=chmp4b
PE=2 SV=1
Length = 220
Score = 181 bits (459), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 120/193 (62%), Positives = 150/193 (77%), Gaps = 8/193 (4%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
ML KKQEFLEKKI +E+ A+ NGTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct: 33 MLTKKQEFLEKKIEQELVTAKKNGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 92
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
ALE A+TNT V+ M AA A+KAAH +MD+++V ++M DI EQQ++A+EIS+AIS PV
Sbjct: 93 ALENAHTNTEVIKNMGYAAKAMKAAHDNMDIDKVDELMQDIIEQQELAQEISDAISKPVG 152
Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKL--STPGGELPEIPSTAPKDKPKEKASTKERS 178
FG + DEDEL ELE LEQEELDK+LL++ + P LP +PST+ +P A KE
Sbjct: 153 FGEEFDEDELLAELEELEQEELDKNLLEIGDNVP---LPNVPSTSLPSRP---AKKKEEE 206
Query: 179 VEDEIRELEAWAS 191
ED++++LEAWA+
Sbjct: 207 DEDDMKDLEAWAA 219
>sp|Q96CF2|CHM4C_HUMAN Charged multivesicular body protein 4c OS=Homo sapiens GN=CHMP4C
PE=1 SV=1
Length = 233
Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/204 (53%), Positives = 147/204 (72%), Gaps = 18/204 (8%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
ML KKQE+LE +I EI +A+ +GT+NKRAA+QALKRKKR+EKQL QIDGTLSTIE QRE
Sbjct: 35 MLGKKQEYLENRIQREIALAKKHGTQNKRAALQALKRKKRFEKQLTQIDGTLSTIEFQRE 94
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
ALE ++TNT VL M AA A+K+ H++MD+N++ D+M +I EQQD+A+EISEA S V
Sbjct: 95 ALENSHTNTEVLRNMGFAAKAMKSVHENMDLNKIDDLMQEITEQQDIAQEISEAFSQRVG 154
Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTA----PKDKP-------K 169
FG D DEDEL ELE LEQEEL+K + + LP +PS++ P KP +
Sbjct: 155 FGDDFDEDELMAELEELEQEELNKKMTNI-----RLPNVPSSSLPAQPNRKPGMSSTARR 209
Query: 170 EKASTKERSVE--DEIRELEAWAS 191
+A++ +R+ E D+I++L AWA+
Sbjct: 210 SRAASSQRAEEEDDDIKQLAAWAT 233
>sp|Q9D7F7|CHM4C_MOUSE Charged multivesicular body protein 4c OS=Mus musculus GN=Chmp4c
PE=2 SV=1
Length = 232
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/204 (52%), Positives = 139/204 (68%), Gaps = 19/204 (9%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
ML KKQE+LE +I E+ +A+ +G++NKRAA+QALKRKKR+EKQL Q+DGTLSTIE QRE
Sbjct: 35 MLAKKQEYLENRIQRELALAKKHGSQNKRAALQALKRKKRFEKQLTQVDGTLSTIEFQRE 94
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
ALE ++TNT VL M AA A+KA H +MD+N++ D+M DI EQQD+A+EISEA S V
Sbjct: 95 ALENSHTNTEVLRNMGFAAKAMKAVHDNMDLNKIDDLMQDITEQQDIAQEISEAFSQRVQ 154
Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAPKDKPKEKASTKERSV- 179
F DE EL ELE LEQEEL+K + L ELP +PS++ +P KAS SV
Sbjct: 155 FADGFDEAELLAELEELEQEELNKKMTSL-----ELPNVPSSSLPAQPSRKASMPS-SVH 208
Query: 180 ------------EDEIRELEAWAS 191
+D+ ++L AWA+
Sbjct: 209 RSRAASSRRAEEDDDFKQLAAWAT 232
>sp|Q6GNN8|CHM4C_XENLA Charged multivesicular body protein 4c OS=Xenopus laevis GN=chmp4c
PE=2 SV=1
Length = 227
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/191 (56%), Positives = 142/191 (74%), Gaps = 2/191 (1%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
ML KKQE+LEKKI E+ A+ +GTKNKRAA+QALK+KKR EKQL QIDGTLSTIE QRE
Sbjct: 39 MLTKKQEYLEKKIELELATAKKHGTKNKRAALQALKKKKRLEKQLAQIDGTLSTIEFQRE 98
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
ALE ++TNT VL M AA A+KAAH++MD+ ++ D+M DI EQQDVA+EIS+AIS PV
Sbjct: 99 ALENSHTNTEVLKNMGYAAKAMKAAHENMDLEKIDDLMQDIHEQQDVAQEISDAISRPVG 158
Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAPKDKPKEKASTKERSVE 180
FG + DEDEL +ELE LEQE+L+ + ++ P ++PST +P +S K+ +
Sbjct: 159 FGDEFDEDELLEELEELEQEDLNSQMANVNLPSVPSSKLPSTKLPSRP--ASSRKKVEDD 216
Query: 181 DEIRELEAWAS 191
D+++ L AWA+
Sbjct: 217 DDMQMLAAWAT 227
>sp|Q569C1|CHM4C_RAT Charged multivesicular body protein 4c OS=Rattus norvegicus
GN=Chmp4c PE=2 SV=1
Length = 232
Score = 169 bits (429), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 106/204 (51%), Positives = 140/204 (68%), Gaps = 19/204 (9%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
M+ KKQE+LE +I E+ +A+ +G++NKRAA+QALKRKKR+EKQL QIDGTLSTIE QRE
Sbjct: 35 MMAKKQEYLENRIQRELALAKKHGSQNKRAALQALKRKKRFEKQLTQIDGTLSTIEFQRE 94
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
ALE ++TNT VL M AA A+KA H++MD+N++ D+M DI EQQD+A+EISEA S V
Sbjct: 95 ALENSHTNTEVLRNMGFAAKAMKAVHENMDLNKIDDLMQDITEQQDIAQEISEAFSQRVQ 154
Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAPKDKPKEKASTKERSV- 179
F DEDEL ELE LEQEEL+K + + ELP +PS++ +P KA SV
Sbjct: 155 FADGFDEDELLAELEELEQEELNKKMTSM-----ELPNVPSSSLPAQPSRKAGVPS-SVH 208
Query: 180 ------------EDEIRELEAWAS 191
+D+ ++L AWA+
Sbjct: 209 RSRAASSRRAEEDDDFKQLAAWAT 232
>sp|A2VDY3|CHM4A_BOVIN Charged multivesicular body protein 4a OS=Bos taurus GN=CHMP4A PE=2
SV=1
Length = 222
Score = 160 bits (406), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 108/195 (55%), Positives = 139/195 (71%), Gaps = 8/195 (4%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
+LIKKQEFLE+KI +E+ A+ +GTKNKRAA+QAL+RKKR E+QL Q DGTLST+E QRE
Sbjct: 32 ILIKKQEFLEQKIEQELQAAKKHGTKNKRAALQALRRKKRLEQQLAQTDGTLSTLEFQRE 91
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
A+E A TN VL TM+ AA LK A++ MD+++V ++M DI EQQ+VA++IS+AIS PV
Sbjct: 92 AIENATTNAEVLRTMELAAQGLKKAYQDMDIDKVDELMADITEQQEVAQQISDAISRPVG 151
Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLST----PGGELPEIPSTAPKDKPKEKASTKE 176
FG DVDEDEL +ELE LEQEEL ++LL + P LP PST +P KA E
Sbjct: 152 FGDDVDEDELLEELEELEQEELARELLHVGDEEEEPPVALPSAPSTHLPAEPAPKADEDE 211
Query: 177 RSVEDEIRELEAWAS 191
E+++L W S
Sbjct: 212 A----ELKQLAEWVS 222
>sp|Q9BY43|CHM4A_HUMAN Charged multivesicular body protein 4a OS=Homo sapiens GN=CHMP4A
PE=1 SV=3
Length = 222
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/195 (53%), Positives = 140/195 (71%), Gaps = 8/195 (4%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
+LIKKQEFLE+KI +E+ A+ GTKNKRAA+QAL+RKKR+E+QL Q DGTLST+E QRE
Sbjct: 32 ILIKKQEFLEQKIQQELQTAKKYGTKNKRAALQALRRKKRFEQQLAQTDGTLSTLEFQRE 91
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
A+E A TN VL TM+ AA ++K A++ MD+++V ++M DI EQQ+VA++IS+AIS P+
Sbjct: 92 AIENATTNAEVLRTMELAAQSMKKAYQDMDIDKVDELMTDITEQQEVAQQISDAISRPMG 151
Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLST----PGGELPEIPSTAPKDKPKEKASTKE 176
FG DVDEDEL +ELE LEQEEL ++LL + P +LP +PST P K E
Sbjct: 152 FGDDVDEDELLEELEELEQEELAQELLNVGDKEEEPSVKLPSVPSTHLPAGPAPKVDEDE 211
Query: 177 RSVEDEIRELEAWAS 191
+ +++L W S
Sbjct: 212 EA----LKQLAEWVS 222
>sp|P59074|CG301_HUMAN Putative protein CGI-301 OS=Homo sapiens GN=CGI-301 PE=5 SV=1
Length = 171
Score = 156 bits (395), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 108/175 (61%), Positives = 129/175 (73%), Gaps = 7/175 (4%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
ML KKQEFLEKKI + +GTKNK AA+QALKRKKRYEKQL QIDGTLSTIE Q++
Sbjct: 1 MLSKKQEFLEKKIEQR------HGTKNKPAALQALKRKKRYEKQLAQIDGTLSTIEFQQQ 54
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
ALE ANTNT VL M +AA A KAAH +MD+++V ++M DIA+QQ++ +EIS AIS PV
Sbjct: 55 ALENANTNTEVLKNMGSAAKAKKAAHDNMDIDKVDELMQDIADQQELGEEISTAISKPVG 114
Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTP-GGELPEIPSTAPKDKPKEKAST 174
FG DEDEL ELE LEQEE DK+LL++S P LP +PS A KP +K T
Sbjct: 115 FGEKSDEDELMAELEELEQEEPDKNLLEVSGPETVPLPNVPSIALPSKPAKKRKT 169
>sp|Q9P7F7|SNF7_SCHPO Vacuolar-sorting protein snf7 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=snf7 PE=3 SV=1
Length = 222
Score = 133 bits (334), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 116/187 (62%), Gaps = 3/187 (1%)
Query: 4 KKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALE 63
KK+E LE++I E+ IAR N T NKR A+ ALKRKK +E +L +I+G+ + IE Q +++
Sbjct: 33 KKEEVLERQIAEQTEIARKNATTNKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQ 92
Query: 64 GANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGH 123
AN N L M+ A+A+K+ + MD ++V +MD I +QQ +++EIS IS PV
Sbjct: 93 NANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQTISEEISTMISTPVGLNA 152
Query: 124 DVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAP--KDKPKEKASTKERSVED 181
++DEDEL EL+ L+Q ELD +L P P +P+ KD P + +E E+
Sbjct: 153 EIDEDELANELDELQQMELDSKMLGAEKPPVHTPAVPAVPSQVKDLPS-ISKPQELDEEE 211
Query: 182 EIRELEA 188
E+R+L+A
Sbjct: 212 ELRKLQA 218
>sp|Q6BSH2|SNF7_DEBHA Vacuolar-sorting protein SNF7 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SNF7 PE=3 SV=2
Length = 226
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 13/197 (6%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
ML KK+ LE +I ++ +AR T NK A ALKRKK YE L +I+ + ++E Q
Sbjct: 30 MLNKKRSHLESQIADQDALARKYITTNKALAKNALKRKKGYEANLMKIENQIDSLETQLT 89
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
++EGAN N + MK A A+K H DV++V + MDDI EQ ++A EISEAIS PV
Sbjct: 90 SIEGANLNLETMKAMKQGAQAMKQIHGEYDVDKVENTMDDIREQVELADEISEAISRPVG 149
Query: 121 FGHDVDEDELEKELEALEQEELDKD---------LLKLSTPGGELPEIPSTAPKDKPKEK 171
VDEDEL++EL L++EE + + K+S P E+P+ P T K+KP
Sbjct: 150 TEF-VDEDELDEELAMLQEEEKEHKQQTPAQKAPVAKVSAPEEEMPDFP-TVNKNKP--A 205
Query: 172 ASTKERSVEDEIRELEA 188
AST++ E+ ++ L+A
Sbjct: 206 ASTEDDEDEEALKALQA 222
>sp|P0CR54|SNF7_CRYNJ Vacuolar-sorting protein SNF7 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SNF7 PE=3 SV=1
Length = 220
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 83/129 (64%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
ML KK+EFL+KKI EE+ A+ N T NKR A+ AL++KK +E +L +I GT T+E Q
Sbjct: 31 MLEKKEEFLQKKIEEEMKKAKANATGNKRLAMAALRQKKAHENELDRIAGTRLTLETQVN 90
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
A+E AN N + MK ADALK H ++ V MD I EQ D+ +IS+AISNPV
Sbjct: 91 AIESANLNAETMVAMKKGADALKGIHSNLTAEGVDATMDKIREQMDLTNDISDAISNPVG 150
Query: 121 FGHDVDEDE 129
G +DED+
Sbjct: 151 MGIVLDEDD 159
>sp|P0CR55|SNF7_CRYNB Vacuolar-sorting protein SNF7 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=SNF7 PE=3 SV=1
Length = 220
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 83/129 (64%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
ML KK+EFL+KKI EE+ A+ N T NKR A+ AL++KK +E +L +I GT T+E Q
Sbjct: 31 MLEKKEEFLQKKIEEEMKKAKANATGNKRLAMAALRQKKAHENELDRIAGTRLTLETQVN 90
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
A+E AN N + MK ADALK H ++ V MD I EQ D+ +IS+AISNPV
Sbjct: 91 AIESANLNAETMVAMKKGADALKGIHSNLTAEGVDATMDKIREQMDLTNDISDAISNPVG 150
Query: 121 FGHDVDEDE 129
G +DED+
Sbjct: 151 MGIVLDEDD 159
>sp|Q86H98|CHMP4_DICDI Charged multivesicular body protein 4 OS=Dictyostelium discoideum
GN=chmp4 PE=3 SV=1
Length = 215
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 104/175 (59%), Gaps = 12/175 (6%)
Query: 1 MLIKKQEFLEKKIGEEINIART-NGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQR 59
ML K+Q FL+ K+ +E A+ K KR A+ LK++ ++ ++ ++ G+ T+ Q
Sbjct: 26 MLEKRQTFLQDKLEKEQEKAKVLVSQKRKREALLCLKKRNNFQNEVTKLQGSYDTLNQQI 85
Query: 60 EALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPV 119
ALE A N ++ +M++ A +L+ H H+ +++V D++++I EQ ++ +EIS AIS P+
Sbjct: 86 FALENAKMNMEIMNSMRDGARSLRELHGHLTIDKVDDVIEEIQEQMEIHEEISNAISQPL 145
Query: 120 AFGHDV-DEDELEKELEALEQEELDKDLLKLSTPGGELPE--------IPSTAPK 165
G+ V DE+EL +EL EQEELD LL + P ELP+ I T PK
Sbjct: 146 --GNQVEDEEELLRELAEYEQEELDAQLLNIKAPSRELPQEIQVNFPTISKTVPK 198
>sp|Q9SZE4|VP322_ARATH Vacuolar protein sorting-associated protein 32 homolog 2
OS=Arabidopsis thaliana GN=VPS32.2 PE=1 SV=1
Length = 219
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 94/163 (57%), Gaps = 1/163 (0%)
Query: 26 KNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAA 85
KNKRAAIQ LKRK+ YE Q++Q+ I Q LEGA T + +++ A A+KA
Sbjct: 54 KNKRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAM 113
Query: 86 HKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKD 145
K +++ V MD+I EQ + K+I EA++ P+ D DEDEL EL+ LE EEL+
Sbjct: 114 QKATNIDDVDKTMDEINEQTENMKQIQEALATPMGAAADFDEDELAAELDELESEELESQ 173
Query: 146 LLKLSTPGGELPEIPSTAPKDKPKEKASTKERSVEDEIRELEA 188
LL+ +T LP +P A + +P K + E+E+ L+A
Sbjct: 174 LLQPATTAPPLPSVPVPAGR-QPARPVPQKRTAEEEELAALQA 215
>sp|P0C149|SNF7_MAGO7 Vacuolar-sorting protein SNF7 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=SNF7 PE=3 SV=1
Length = 226
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 109/190 (57%), Gaps = 2/190 (1%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
ML K+++ L+ +I E+ IAR N + NK AA ALKRKK +E L Q + T+E Q
Sbjct: 33 MLQKREKHLQNQISEQDAIARKNISTNKNAAKAALKRKKTHEHSLDQTLSQIGTLEQQIN 92
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
A+E AN N L MK A A++ H + V +V + MD + EQ +++EI AI+N
Sbjct: 93 AIESANINMETLEAMKKAGKAMEDIHGKLTVEKVDETMDKLREQNALSEEIVNAITNNQL 152
Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTP--GGELPEIPSTAPKDKPKEKASTKERS 178
+D+ +LE ELEA+EQE+LD+ +LK T + +P+ A + + + +E
Sbjct: 153 GNEAIDDADLEDELEAMEQEQLDEKILKTGTGPVSDAIQRLPAAANGELKGKATTVEEDD 212
Query: 179 VEDEIRELEA 188
E E+R+L+A
Sbjct: 213 EEAELRKLQA 222
>sp|Q753W3|SNF7_ASHGO Vacuolar-sorting protein SNF7 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SNF7 PE=3
SV=1
Length = 237
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 107/180 (59%), Gaps = 13/180 (7%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTK-NKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQR 59
+L KKQ L+ ++ + AR +K NK A ALKRKK +E QL +ID + ++E Q
Sbjct: 31 LLSKKQAHLQTQMTSQEESARHFLSKGNKNMAKAALKRKKVFESQLLKIDKQVDSLEQQL 90
Query: 60 EALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPV 119
++E AN N + MK A A+K H+ +DV +V + MD+I EQ ++ +EISEAIS P+
Sbjct: 91 YSIENANLNLETMKAMKQGASAMKHIHEGLDVERVDETMDEIREQVELGEEISEAISRPL 150
Query: 120 AFG-HDVDEDELEKELEALEQEELDKDLLKLSTPGG--------ELPEIPSTAPKDKPKE 170
G +++DEDEL++EL+ L QEE+ + +++ LP +PS+ D P++
Sbjct: 151 YTGVNEIDEDELDEELDMLAQEEVARKVMEPGAAVPAAAPATKVSLPSVPSS---DMPQQ 207
>sp|P39929|SNF7_YEAST Vacuolar-sorting protein SNF7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SNF7 PE=1 SV=1
Length = 240
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 105/177 (59%), Gaps = 12/177 (6%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTK-NKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQR 59
+L KKQ L +I + N AR TK NK A ALK+KK E+ L +++GT+ ++E Q
Sbjct: 32 LLSKKQSHLRTQITNQENEARIFLTKGNKVMAKNALKKKKTIEQLLSKVEGTMESMEQQL 91
Query: 60 EALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPV 119
++E AN N + M+ A A+K H +D+++V + MD+I EQ ++ EIS+AIS P+
Sbjct: 92 FSIESANLNLETMRAMQEGAKAMKTIHSGLDIDKVDETMDEIREQVELGDEISDAISRPL 151
Query: 120 AFG-HDVDEDELEKELEALEQEELDKDLLKL------STPGGE----LPEIPSTAPK 165
G ++VDEDEL++EL+ L QE +++ K+ + P E LP +PS K
Sbjct: 152 ITGANEVDEDELDEELDMLAQENANQETSKIVNNNVNAAPISENKVSLPSVPSNKIK 208
>sp|Q6FW96|SNF7_CANGA Vacuolar-sorting protein SNF7 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SNF7
PE=3 SV=1
Length = 228
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 78/125 (62%), Gaps = 1/125 (0%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTK-NKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQR 59
+L KKQ L+ +I + N AR T+ NK A ALK+KK YE QL +++ + ++E Q
Sbjct: 30 LLSKKQAHLQGQITAQENEARKFLTRGNKTMAKNALKKKKVYEGQLVKLESQMDSLEQQL 89
Query: 60 EALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPV 119
++E AN N + MK A A+K+ H +D+++V + MD+I EQ ++ +EIS+AIS P+
Sbjct: 90 FSIESANLNLETMRAMKQGAKAMKSIHSGLDIDRVDETMDEIREQVELGEEISDAISRPL 149
Query: 120 AFGHD 124
G +
Sbjct: 150 YTGAN 154
>sp|Q5ABD0|SNF7_CANAL Vacuolar-sorting protein SNF7 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=SNF7 PE=3 SV=1
Length = 226
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 59/96 (61%)
Query: 25 TKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKA 84
+K A ALKRKK YE L +++ + T+E Q ++EGAN N + MK A A+K
Sbjct: 55 SKQTTLAKSALKRKKGYESNLLKVENQIETLETQLISIEGANLNLETMKAMKQGAKAMKQ 114
Query: 85 AHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
H DV++V D MD+I EQ ++A EISEAIS PV
Sbjct: 115 IHGEYDVDKVEDTMDEIREQVELADEISEAISRPVG 150
>sp|O82197|VP321_ARATH Vacuolar protein sorting-associated protein 32 homolog 1
OS=Arabidopsis thaliana GN=VPS32.1 PE=1 SV=1
Length = 213
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 107/193 (55%), Gaps = 17/193 (8%)
Query: 1 MLIKKQEFLEKKIGEEINIAR-TNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQR 59
ML KK+ L KK E+ A+ + KNKRAAIQ LKRK+ YE+Q++Q+ I Q
Sbjct: 29 MLEKKENVLLKKATGEVEKAKEFSRAKNKRAAIQCLKRKRLYEQQVEQLGNFQLRIHDQM 88
Query: 60 EALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPV 119
LEGA T + ++ A A+KA K +++ V MD+I EQ + K+I EA+S P
Sbjct: 89 IMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAP- 147
Query: 120 AFG-HDVDEDELEKELEALEQEELDKDLLK---LSTPGGELPEIPSTAPKDKPKEKASTK 175
FG +D DEDELE EL+ LE EL++ LL+ + P G P P +K T
Sbjct: 148 -FGANDFDEDELEAELDELEGAELEEQLLQPVPIHVPQG-------NKPARAPAQKQPTA 199
Query: 176 ERSVEDEIRELEA 188
E EDE+ L+A
Sbjct: 200 E---EDELAALQA 209
>sp|Q5B5E0|SNF7_EMENI Vacuolar-sorting protein snf7 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=snf7
PE=1 SV=1
Length = 242
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 93/153 (60%), Gaps = 3/153 (1%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
ML K+++ LE ++ E+ IA+ N T NK AA AL+RKK +EK L+Q + +E Q
Sbjct: 30 MLQKREKHLENQMNEQEAIAKKNVTTNKNAAKAALRRKKVHEKNLEQTQAQIVQLEQQIY 89
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHD--MMDDIAEQQDVAKEISEAISNP 118
++E AN N L MK A A++ H M V QV + + D + EQQ + EI+ AI+NP
Sbjct: 90 SIEAANINHETLAAMKAAGAAMEKIHNGMTVEQVDETILRDKLREQQAINDEIAIAITNP 149
Query: 119 VAFGHDVDEDELEKELEALEQEELDKDLLKLST 151
FG VDE++LE ELE +EQE +D+ +L T
Sbjct: 150 -GFGEQVDEEDLEAELEGMEQEAMDERMLHTGT 181
>sp|Q871Y8|SNF7_NEUCR Vacuolar-sorting protein snf-7 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=snf-7 PE=3 SV=1
Length = 228
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 91/157 (57%), Gaps = 4/157 (2%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
ML K++ L+ +I E+ IAR N + NK AA QAL+RKK E L+ G ++T+E Q
Sbjct: 34 MLQKRERHLQNQIDEQDAIARKNVSTNKTAAKQALRRKKVAESTLETTLGQITTLEQQIN 93
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
A+E AN N L M+ A +A+ H + +V + M + E D++ EI+ AI++
Sbjct: 94 AIESANINRETLAAMQAAREAMGKIHGKLTPEKVDEEMAKLQEANDLSNEIATAITS-AN 152
Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELP 157
G +DE ELE ELE L+QEE+D KL GG +P
Sbjct: 153 IGQPIDEGELEDELEKLQQEEVDS---KLHETGGSIP 186
>sp|Q6CJL0|SNF7_KLULA Vacuolar-sorting protein SNF7 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=SNF7 PE=3 SV=1
Length = 232
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 1 MLIKKQEFLEKKIGEEINIARTN-GTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQR 59
+L KKQ L+ +I ++ +A+ + + NK A LK+KK YE QL ++ + +++ Q
Sbjct: 29 LLNKKQAHLQTQIDQQQQLAKKSLQSGNKNNAKTYLKKKKLYESQLDKLQSQIDSLDQQL 88
Query: 60 EALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPV 119
++E AN N L MK A A+K HK +D+++V D MD+I EQ ++ +EISEAIS P+
Sbjct: 89 YSIENANLNLETLKAMKQGASAMKNIHKGLDLDKVDDTMDEIREQVELNQEISEAISKPL 148
>sp|Q8R1T1|CHMP7_MOUSE Charged multivesicular body protein 7 OS=Mus musculus GN=Chmp7 PE=1
SV=1
Length = 451
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 69/132 (52%)
Query: 21 RTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAAD 80
R K+ A+++LK K+R EK+++ + L T++ + + + T+ V +
Sbjct: 271 RACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVFNAYQAGVG 330
Query: 81 ALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQE 140
ALK + K + V + ++D I E D E+S+ ++ V G D D +ELEKEL+ L Q+
Sbjct: 331 ALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEELEKELDILLQD 390
Query: 141 ELDKDLLKLSTP 152
+ L L TP
Sbjct: 391 TTTEPLSLLETP 402
>sp|Q6CBS3|SNF7_YARLI Vacuolar-sorting protein SNF7 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=SNF7 PE=3 SV=1
Length = 215
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 75/123 (60%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
+L KK + L +I E+ N+AR + T NK A ALK+KK EKQ + + G++ +++
Sbjct: 26 VLNKKNDNLIVQIQEQENLARKHVTTNKLMAKNALKKKKNLEKQQETVQGSIDSLQTSIN 85
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
LE AN N + M+ A A+K H +M++++V +MD+ +Q +++E+SEAIS P A
Sbjct: 86 TLETANLNLETMKAMQEGAKAMKQIHGNMNIDKVDKIMDETRDQVALSEEVSEAISRPYA 145
Query: 121 FGH 123
+
Sbjct: 146 NAY 148
>sp|Q9VVI9|CHMP5_DROME Charged multivesicular body protein 5 OS=Drosophila melanogaster
GN=CG6259 PE=1 SV=2
Length = 226
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 5/157 (3%)
Query: 11 KKIGEEINIARTNGTKN--KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTN 68
+K E+++ R KN K+ A++ LK+KK YE+Q + + +E A +
Sbjct: 43 RKYREQMSKMREGPAKNSVKQKALRVLKQKKAYEQQAESLRNQSFNMEQANYAAQSLKDT 102
Query: 69 TAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDED 128
A + MK+ +K +K ++++Q+ D+ DD+A+ + A E+ EA+ +VD+D
Sbjct: 103 QATVAAMKDGVKQMKTEYKKINIDQIEDIQDDMADMFEQADEVQEALGRTYGM-PEVDDD 161
Query: 129 ELEKELEALEQE-ELDKDLLKLSTPGGELPEIPSTAP 164
+L+ EL+AL E LD D L + PE PS P
Sbjct: 162 DLQAELDALGDEIALDDDTSYLDDV-VKAPEAPSREP 197
>sp|Q54JK4|CHMP5_DICDI Charged multivesicular body protein 5 OS=Dictyostelium discoideum
GN=chmp5 PE=3 SV=1
Length = 215
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 7/152 (4%)
Query: 16 EINIARTNGTKN--KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLT 73
+I R +N K+ AI+ L++KK YE+Q Q+ T +E + A E ++
Sbjct: 47 QIKATRPGPAQNAIKQKAIRVLQQKKMYERQRDQMASTSFNMEQTKFATESMRDTITTVS 106
Query: 74 TMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKE 133
MK A +K KH+ + V DM D++ + D EI E++ +DE ELE E
Sbjct: 107 AMKQGAKDMKTQLKHIKIEDVDDMQDEMQDLLDYNNEIQESLGRAYQTPDTLDESELEAE 166
Query: 134 LEALEQEELDKDLLKLSTPGGEL-PEIPSTAP 164
L ++ EEL+ L+ S P + P +P+T P
Sbjct: 167 LMSMG-EELE---LEASMPSYLMTPSVPTTDP 194
>sp|Q5R812|CHMP7_PONAB Charged multivesicular body protein 7 OS=Pongo abelii GN=CHMP7 PE=2
SV=1
Length = 453
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 64/120 (53%)
Query: 21 RTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAAD 80
R K+ A+++LK K+R EK+++ + L T++ + + + T+ V +
Sbjct: 271 RACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVFNAYQAGVG 330
Query: 81 ALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQE 140
ALK + K + V + ++D I E D E+S+ ++ V G D D +ELEKEL+ L Q+
Sbjct: 331 ALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEELEKELDILLQD 390
>sp|Q8WUX9|CHMP7_HUMAN Charged multivesicular body protein 7 OS=Homo sapiens GN=CHMP7 PE=1
SV=1
Length = 453
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 64/120 (53%)
Query: 21 RTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAAD 80
R K+ A+++LK K+R EK+++ + L T++ + + + T+ V +
Sbjct: 271 RACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVFNAYQAGVG 330
Query: 81 ALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQE 140
ALK + K + V + ++D I E D E+S+ ++ V G D D +ELEKEL+ L Q+
Sbjct: 331 ALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEELEKELDILLQD 390
>sp|Q7T0X5|CHMP7_XENLA Charged multivesicular body protein 7 OS=Xenopus laevis GN=chmp7
PE=2 SV=1
Length = 422
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 18/168 (10%)
Query: 14 GEEINI----ART-NGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTN 68
GEE N ART N NK A++ L+++K E+++ ++ I+ E + A T+
Sbjct: 244 GEESNRLTEEARTYNRAGNKNQALRCLRKRKLVERRITELQNKQDNIQGILERISAAETD 303
Query: 69 TAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDED 128
V++ + ALK A K + + + ++D I E D+ ++S+ +S+ DVD D
Sbjct: 304 RKVVSAYQMGVSALKQALKDVTLEKAESIVDQIQEYCDLQDDLSQTLSS--VTDADVDSD 361
Query: 129 ELEKEL-EALEQEELDKDLLKLSTPGGELPEIPSTAPKDKPKEKASTK 175
+LE+EL E L+ EE+ D LP++PS PK K
Sbjct: 362 DLERELNEILQNEEMIID----------LPDVPSGPVIISPKRPTEWK 399
>sp|Q9FY89|VP202_ARATH Vacuolar protein sorting-associated protein 20 homolog 2
OS=Arabidopsis thaliana GN=VPS20.2 PE=1 SV=1
Length = 216
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 13/187 (6%)
Query: 6 QEFLEKKIGEEINIAR-TNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEG 64
Q+ LEK I E AR K K A+ ALK+K+ E+ L+Q+D L +E Q +E
Sbjct: 32 QQQLEKVIEAEKQAARDLIREKRKDRALLALKKKRTQEELLKQVDQWLINVEQQLADIEL 91
Query: 65 ANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHD 124
+ AV ++K +A+KA ++++ V +MDD AE + E+S + ++
Sbjct: 92 TSKQKAVFESLKQGNNAIKAIQSEVNLDDVQKLMDDTAEAKAYQDELSAILGEKLSAE-- 149
Query: 125 VDEDELEKELEALEQEELDKDLLKLSTP--------GGELPEIPSTAPKDKPKEKASTKE 176
DE+E+ E + LE + +D+ ++ T +LP++P+ AP E STK
Sbjct: 150 -DEEEILAEFDNLESLLIVEDMPEVPTTELMPEEPEKMDLPDVPTKAPV-ASNETTSTKR 207
Query: 177 RSVEDEI 183
+ +E+ +
Sbjct: 208 KVLEEPL 214
>sp|Q5RBR3|CHMP5_PONAB Charged multivesicular body protein 5 OS=Pongo abelii GN=CHMP5 PE=2
SV=1
Length = 219
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 7/159 (4%)
Query: 12 KIGEEINIARTNGTKN--KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNT 69
K ++I R KN K+ A++ LK+K+ YE+Q + +E ++
Sbjct: 44 KYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTK 103
Query: 70 AVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGH-DVDED 128
+ MK +K A+K + ++Q+ D+ D + + + A EI EA+S ++G ++DED
Sbjct: 104 TTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSR--SYGTPELDED 161
Query: 129 ELEKELEALEQEEL-DKDLLKLSTPGGELPEIPSTAPKD 166
+LE EL+AL E L D+D L P IP P D
Sbjct: 162 DLEAELDALGDELLADEDSSYLDE-AASAPAIPEGVPTD 199
>sp|Q9NZZ3|CHMP5_HUMAN Charged multivesicular body protein 5 OS=Homo sapiens GN=CHMP5 PE=1
SV=1
Length = 219
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 7/159 (4%)
Query: 12 KIGEEINIARTNGTKN--KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNT 69
K ++I R KN K+ A++ LK+K+ YE+Q + +E ++
Sbjct: 44 KYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTK 103
Query: 70 AVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGH-DVDED 128
+ MK +K A+K + ++Q+ D+ D + + + A EI EA+S ++G ++DED
Sbjct: 104 TTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSR--SYGTPELDED 161
Query: 129 ELEKELEALEQEEL-DKDLLKLSTPGGELPEIPSTAPKD 166
+LE EL+AL E L D+D L P IP P D
Sbjct: 162 DLEAELDALGDELLADEDSSYLDE-AASAPAIPEGVPTD 199
>sp|Q5ZJB7|CHMP7_CHICK Charged multivesicular body protein 7 OS=Gallus gallus GN=CHMP7
PE=2 SV=1
Length = 448
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 64/113 (56%)
Query: 28 KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHK 87
K+ A++ LK K+R E++++++ L ++ + + + T+ V + ALK + K
Sbjct: 276 KQLALRCLKSKRRTERRIEELHSKLDAVQGILDRIYASQTDQMVFNAYQAGVGALKLSMK 335
Query: 88 HMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQE 140
+ V + +++D I E D E+++ ++ G ++D +ELEKEL++L Q+
Sbjct: 336 DVTVEKAENLVDQIQELCDTQDEVAQTLAGAGVNGLEMDSEELEKELDSLLQD 388
>sp|Q4QQV8|CHMP5_RAT Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5
PE=2 SV=1
Length = 219
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 7/159 (4%)
Query: 12 KIGEEINIARTNGTKN--KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNT 69
K ++I R KN K+ A++ LK+K+ YE+Q + +E ++
Sbjct: 44 KYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTK 103
Query: 70 AVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGH-DVDED 128
+ MK +K A+K + ++Q+ D+ D + + + A EI EA+ ++G ++DED
Sbjct: 104 TTVDAMKLGVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGR--SYGTPELDED 161
Query: 129 ELEKELEALEQEEL-DKDLLKLSTPGGELPEIPSTAPKD 166
+LE EL+AL E L D+D L P IP P D
Sbjct: 162 DLEAELDALGDELLADEDSSYLDE-AASAPAIPEGVPTD 199
>sp|Q9D7S9|CHMP5_MOUSE Charged multivesicular body protein 5 OS=Mus musculus GN=Chmp5 PE=2
SV=1
Length = 219
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 7/159 (4%)
Query: 12 KIGEEINIARTNGTKN--KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNT 69
K ++I R KN K+ A++ LK+K+ YE+Q + +E ++
Sbjct: 44 KYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTK 103
Query: 70 AVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGH-DVDED 128
+ MK +K A+K + ++Q+ D+ D + + + A EI EA+ ++G ++DED
Sbjct: 104 TTVDAMKLGVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGR--SYGTPELDED 161
Query: 129 ELEKELEALEQEEL-DKDLLKLSTPGGELPEIPSTAPKD 166
+LE EL+AL E L D+D L P IP P D
Sbjct: 162 DLEAELDALGDELLADEDSSYLDE-AASAPAIPEGVPTD 199
>sp|Q5FW29|CHMP5_XENTR Charged multivesicular body protein 5 OS=Xenopus tropicalis
GN=chmp5 PE=2 SV=1
Length = 219
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 5/158 (3%)
Query: 12 KIGEEINIARTNGTKN--KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNT 69
K +++ R +KN K+ A++ LK+K+ YE+Q ++ +E A++
Sbjct: 44 KYKDQMKKMREGPSKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQTNYAIQSLKDTK 103
Query: 70 AVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGH-DVDED 128
+ MK A +K A+K + ++Q+ D+ D + + + A EI EA+S ++G ++DED
Sbjct: 104 TTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSR--SYGTPEIDED 161
Query: 129 ELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAPKD 166
+LE EL+AL E L D P IP P D
Sbjct: 162 DLEAELDALGDELLLDDDTSYLDEAASAPAIPEGVPND 199
>sp|Q503V0|CHMP6_DANRE Charged multivesicular body protein 6 OS=Danio rerio GN=chmp6 PE=2
SV=3
Length = 206
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 40 RYEKQL-QQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMM 98
RY+ QL ++ + +S +E + +E A V+ +K D LK H+ + + +V +M
Sbjct: 68 RYQDQLLEKTENQISNLERMVQDIEFAQIEMKVIEGLKVGNDCLKKMHEVLSIEEVEKIM 127
Query: 99 DDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPE 158
D+ + + K+I E ++ + DE+ + ELEA+ Q E D +L ++ PG ELPE
Sbjct: 128 DETHDAIEYQKQIDEMLAGSLT---QEDEEAVLAELEAITQGEADLELPEV--PGEELPE 182
Query: 159 IPSTAP 164
+P P
Sbjct: 183 VPEQEP 188
>sp|Q6DD52|CHMP5_XENLA Charged multivesicular body protein 5 OS=Xenopus laevis GN=chmp5
PE=2 SV=1
Length = 219
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 5/158 (3%)
Query: 12 KIGEEINIARTNGTKN--KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNT 69
K +++ R +KN K+ A++ LK+K+ YE+Q ++ +E ++
Sbjct: 44 KYKDQMKKMREGPSKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQANYTIQTLKDTK 103
Query: 70 AVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGH-DVDED 128
+ MK A +K A+K + ++Q+ D+ D + + + A EI EA+S ++G ++DED
Sbjct: 104 TTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSR--SYGTPEIDED 161
Query: 129 ELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAPKD 166
+LE EL+AL E L D P IP P D
Sbjct: 162 DLEAELDALGDELLLDDDTSYLDEAASAPAIPEGVPND 199
>sp|Q8GXN6|VP201_ARATH Vacuolar protein sorting-associated protein 20 homolog 1
OS=Arabidopsis thaliana GN=VPS20.1 PE=1 SV=1
Length = 219
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 10/166 (6%)
Query: 6 QEFLEKKIGEEINIAR-TNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEG 64
Q+ LEK I E AR K K A+ AL++K+ E+ L+Q+D + +E Q +E
Sbjct: 32 QQKLEKVIEAEKQAARDLIREKRKDRALLALRKKRTQEELLKQVDQWVINVEQQLTDIEL 91
Query: 65 ANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHD 124
+ AV ++K A+KA +D++ V +MDD A+ + E++ + ++
Sbjct: 92 TSKQKAVFESLKQGNSAIKAIQSELDLDDVQKLMDDTADAKAYQDELNAILGEKLSAE-- 149
Query: 125 VDEDELEKELEALEQEELDKDLLKLSTPGGE------LPEIPSTAP 164
DE+++ E + LE + + ++ ++ T E LP++P+ P
Sbjct: 150 -DEEDILAEFDNLESQLIVDEMPEVPTKESEESEKLDLPDVPTKTP 194
>sp|Q7T339|CHMP5_DANRE Charged multivesicular body protein 5 OS=Danio rerio GN=chmp5 PE=2
SV=1
Length = 220
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 5/159 (3%)
Query: 12 KIGEEINIARTNGTKN--KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNT 69
K +++ R +KN K+ A++ LK+K+ YE Q Q+ +E ++
Sbjct: 44 KYKDQMKKMRDGPSKNMVKQKAMRVLKQKRMYEGQRDQLMQQSFNMEQANYTIQTLKDTK 103
Query: 70 AVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFG-HDVDED 128
+ MK A +K A+K++ ++Q+ D+ D + + + A E+ EA+S ++G ++DED
Sbjct: 104 TTVEAMKIGAKEMKKAYKNVKIDQIEDLQDQLEDMMEDANEVQEALSR--SYGTPEIDED 161
Query: 129 ELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAPKDK 167
+LE EL+AL E L D P IP AP D+
Sbjct: 162 DLEAELDALGDELLLDDDNSYLDEASSAPAIPEGAPGDR 200
>sp|Q96FZ7|CHMP6_HUMAN Charged multivesicular body protein 6 OS=Homo sapiens GN=CHMP6 PE=1
SV=3
Length = 201
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 20/152 (13%)
Query: 35 LKRKKRYEKQLQQIDGT---LSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDV 91
L +KKRY++QL +D T +S++E +++E V+ ++ + L H+ M +
Sbjct: 63 LLKKKRYQEQL--LDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSI 120
Query: 92 NQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLST 151
+V ++D+ E + ++I E ++ +F + DED + +EL A+ QE++
Sbjct: 121 EEVERILDETQEAVEYQRQIDELLAG--SFTQE-DEDAILEELSAITQEQI--------- 168
Query: 152 PGGELPEIPSTAPKDKPKEKASTKERSVEDEI 183
ELPE+PS +K E K R + E+
Sbjct: 169 ---ELPEVPSEPLPEKIPENVPVKARPRQAEL 197
>sp|Q5R861|CHMP6_PONAB Charged multivesicular body protein 6 OS=Pongo abelii GN=CHMP6 PE=2
SV=3
Length = 201
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 90/181 (49%), Gaps = 24/181 (13%)
Query: 10 EKKIGEEIN----IARTNGTKNKRAAIQALKRKKRYEKQLQQIDGT---LSTIEMQREAL 62
+K+I +++ +AR ++ + L +KKRY++QL +D T +S++E +++
Sbjct: 34 QKRIAQQLERERALARQLLRDGRKERAKLLLKKKRYQEQL--LDRTENQISSLEAMVQSI 91
Query: 63 EGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFG 122
E V+ ++ + L H+ M + +V ++D+ E + ++I E ++ +F
Sbjct: 92 EFTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAG--SFT 149
Query: 123 HDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAPKDKPKEKASTKERSVEDE 182
+ DED + +EL A+ QE++ ELPE+PS +K E K R + E
Sbjct: 150 QE-DEDAILEELSAITQEQI------------ELPEVPSEPLPEKIPEDVPVKARPRQAE 196
Query: 183 I 183
+
Sbjct: 197 L 197
>sp|O94318|VPS20_SCHPO Vacuolar protein sorting-associated protein 20
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps20 PE=3 SV=1
Length = 226
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 11/167 (6%)
Query: 2 LIKKQEFLEKKIGEEINIAR-TNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
L++ + LEK EI+IAR +KR A++ALK KK Y + Q G L IE
Sbjct: 25 LLRYSKRLEKIEQLEIDIARKCLRDSDKRGALRALKAKKLYSGLITQTYGQLGNIEQLLS 84
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
+E V+ ++ + ++ M + +V + +D E E+++ + ++
Sbjct: 85 TIEFTLIQKDVMFGLQEGTNLIRQLQADMPLERVGRICNDRDEAMSYVDEVNDMLQGRMS 144
Query: 121 FGHDVDEDELEKELEALEQEELDKDLLKLSTPGGE-------LPEIP 160
EDE+++EL++L +E+ D+ + L PG LP +P
Sbjct: 145 RDQ---EDEIQEELDSLIREQEDEKVKDLEKPGFTPSTGVDVLPSVP 188
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.124 0.323
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,128,866
Number of Sequences: 539616
Number of extensions: 2996710
Number of successful extensions: 13302
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 493
Number of HSP's that attempted gapping in prelim test: 12799
Number of HSP's gapped (non-prelim): 906
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 58 (26.9 bits)