Query psy12999
Match_columns 191
No_of_seqs 150 out of 831
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 16:30:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1656|consensus 100.0 1E-46 2.2E-51 302.9 22.6 189 1-191 32-221 (221)
2 PTZ00464 SNF-7-like protein; P 100.0 3.7E-35 7.9E-40 241.9 21.7 167 2-171 23-200 (211)
3 PTZ00446 vacuolar sorting prot 100.0 7E-35 1.5E-39 236.2 20.0 145 1-147 38-183 (191)
4 KOG2910|consensus 100.0 2.4E-30 5.2E-35 206.5 20.3 149 2-162 28-177 (209)
5 PF03357 Snf7: Snf7; InterPro 99.9 2.9E-28 6.3E-33 192.8 6.9 158 2-164 13-171 (171)
6 KOG1655|consensus 99.9 2.8E-24 6E-29 172.4 19.7 140 2-142 24-175 (218)
7 KOG2911|consensus 99.9 2.2E-23 4.8E-28 184.2 19.7 155 2-163 245-401 (439)
8 KOG3230|consensus 99.7 1.2E-15 2.7E-20 122.8 17.5 125 28-158 59-183 (224)
9 KOG3231|consensus 99.4 1.2E-11 2.7E-16 97.6 15.5 162 18-186 43-206 (208)
10 KOG3229|consensus 99.3 4.7E-10 1E-14 91.3 16.9 125 29-163 62-187 (227)
11 KOG3232|consensus 98.7 6.1E-06 1.3E-10 65.9 19.3 128 15-150 34-168 (203)
12 KOG1655|consensus 97.8 0.00093 2E-08 54.5 13.4 139 2-140 17-170 (218)
13 PTZ00464 SNF-7-like protein; P 97.7 0.0031 6.6E-08 52.4 15.0 95 44-138 69-166 (211)
14 PF04012 PspA_IM30: PspA/IM30 97.5 0.012 2.7E-07 48.5 15.9 132 2-138 56-202 (221)
15 PRK10698 phage shock protein P 97.4 0.025 5.4E-07 47.2 17.4 114 2-115 57-185 (222)
16 TIGR02977 phageshock_pspA phag 97.1 0.091 2E-06 43.6 17.5 130 2-138 57-201 (219)
17 PF03357 Snf7: Snf7; InterPro 96.8 0.0046 1E-07 48.4 7.1 151 3-170 7-169 (171)
18 COG5491 VPS24 Conserved protei 96.7 0.13 2.7E-06 42.6 14.8 103 42-148 41-151 (204)
19 COG1842 PspA Phage shock prote 96.1 0.66 1.4E-05 38.9 17.0 134 2-139 57-205 (225)
20 PTZ00446 vacuolar sorting prot 95.0 0.88 1.9E-05 37.3 12.4 108 29-138 55-170 (191)
21 COG5491 VPS24 Conserved protei 94.4 2.5 5.4E-05 35.0 14.4 109 25-141 35-148 (204)
22 KOG1656|consensus 94.0 3 6.5E-05 34.5 14.0 106 31-140 52-168 (221)
23 KOG3229|consensus 90.6 9 0.0002 31.9 15.4 25 126-150 157-181 (227)
24 PF08651 DASH_Duo1: DASH compl 79.2 12 0.00025 26.3 6.5 64 41-119 3-66 (78)
25 KOG2911|consensus 75.4 47 0.001 30.6 10.8 65 5-73 241-310 (439)
26 PRK14162 heat shock protein Gr 75.1 24 0.00052 29.0 8.2 13 45-57 92-104 (194)
27 KOG3584|consensus 73.2 11 0.00024 33.0 6.0 31 24-54 296-326 (348)
28 KOG0994|consensus 72.4 52 0.0011 34.3 11.1 91 26-119 1447-1538(1758)
29 PF03908 Sec20: Sec20; InterP 71.1 34 0.00073 24.2 7.9 60 33-92 9-69 (92)
30 PRK14146 heat shock protein Gr 67.0 45 0.00098 27.8 8.3 13 45-57 107-119 (215)
31 PF04065 Not3: Not1 N-terminal 63.4 54 0.0012 27.7 8.2 26 82-107 186-212 (233)
32 PRK14140 heat shock protein Gr 63.2 70 0.0015 26.2 8.6 8 7-14 47-54 (191)
33 PRK14163 heat shock protein Gr 61.1 86 0.0019 26.2 8.9 36 57-92 98-133 (214)
34 PRK14159 heat shock protein Gr 59.7 83 0.0018 25.4 8.3 14 45-58 76-89 (176)
35 PRK14155 heat shock protein Gr 59.0 1E+02 0.0022 25.5 9.2 19 3-21 19-37 (208)
36 PF06248 Zw10: Centromere/kine 56.4 1.8E+02 0.0039 27.5 13.5 85 2-86 12-116 (593)
37 PRK14148 heat shock protein Gr 56.1 97 0.0021 25.4 8.3 20 3-22 39-58 (195)
38 smart00685 DM14 Repeats in fly 54.1 62 0.0013 21.5 5.9 42 7-48 2-44 (59)
39 PF04100 Vps53_N: Vps53-like, 53.8 1.7E+02 0.0037 26.4 13.4 42 66-107 131-172 (383)
40 PRK14149 heat shock protein Gr 53.6 1E+02 0.0022 25.3 8.0 11 6-16 45-55 (191)
41 PF14282 FlxA: FlxA-like prote 53.3 87 0.0019 22.9 7.2 56 4-59 19-74 (106)
42 KOG2150|consensus 52.3 2.2E+02 0.0048 27.3 13.6 107 3-110 41-193 (575)
43 COG0576 GrpE Molecular chapero 51.9 1.3E+02 0.0028 24.5 9.3 81 4-84 43-129 (193)
44 KOG0972|consensus 50.5 1.8E+02 0.0039 25.8 11.6 28 91-118 307-334 (384)
45 KOG2910|consensus 49.7 1.5E+02 0.0032 24.5 11.6 30 49-78 69-98 (209)
46 KOG0995|consensus 45.4 2.9E+02 0.0062 26.6 15.6 113 3-115 227-355 (581)
47 PRK14154 heat shock protein Gr 45.3 1.8E+02 0.0039 24.2 8.9 11 5-15 60-70 (208)
48 PRK14141 heat shock protein Gr 44.6 1.7E+02 0.0038 24.2 8.1 15 3-17 37-51 (209)
49 PF08651 DASH_Duo1: DASH compl 44.2 1.1E+02 0.0023 21.3 8.0 45 41-85 17-62 (78)
50 PF02609 Exonuc_VII_S: Exonucl 44.0 82 0.0018 19.9 5.7 40 50-89 3-43 (53)
51 COG1256 FlgK Flagellar hook-as 43.4 1.2E+02 0.0026 28.8 7.9 69 69-138 141-214 (552)
52 PRK14158 heat shock protein Gr 42.7 1.9E+02 0.0041 23.7 8.7 14 5-18 41-54 (194)
53 PRK14143 heat shock protein Gr 42.5 2.1E+02 0.0045 24.2 10.2 19 4-22 67-85 (238)
54 PRK14147 heat shock protein Gr 42.0 1.8E+02 0.0039 23.3 8.3 11 5-15 26-36 (172)
55 PF05659 RPW8: Arabidopsis bro 42.0 1.6E+02 0.0036 22.8 9.2 50 37-86 95-144 (147)
56 KOG3230|consensus 41.8 2E+02 0.0044 23.9 11.9 69 46-116 80-151 (224)
57 PF05852 DUF848: Gammaherpesvi 41.1 1.8E+02 0.0038 22.9 13.3 27 90-116 87-113 (146)
58 PRK04778 septation ring format 40.8 3.2E+02 0.0069 25.8 13.6 26 112-141 240-265 (569)
59 PF10212 TTKRSYEDQ: Predicted 40.5 2.3E+02 0.005 26.9 9.0 57 3-59 419-478 (518)
60 PRK14151 heat shock protein Gr 39.7 2E+02 0.0043 23.1 8.0 11 5-15 28-38 (176)
61 cd00632 Prefoldin_beta Prefold 38.8 1.5E+02 0.0032 21.3 9.4 91 39-140 9-99 (105)
62 PRK14144 heat shock protein Gr 37.8 2.3E+02 0.005 23.3 8.0 9 7-15 48-56 (199)
63 PRK14145 heat shock protein Gr 36.3 2.4E+02 0.0053 23.1 8.7 10 6-15 47-56 (196)
64 PRK14064 exodeoxyribonuclease 35.4 99 0.0021 21.3 4.5 43 47-89 7-50 (75)
65 PF15254 CCDC14: Coiled-coil d 35.3 4.7E+02 0.01 26.2 10.9 70 3-72 454-527 (861)
66 TIGR03687 pupylate_cterm ubiqu 34.9 59 0.0013 19.0 2.7 18 92-109 3-20 (33)
67 PF06160 EzrA: Septation ring 34.3 4.1E+02 0.0088 25.1 17.1 66 70-140 194-260 (560)
68 TIGR02338 gimC_beta prefoldin, 34.1 1.8E+02 0.004 21.1 9.7 92 37-139 11-102 (110)
69 PF09340 NuA4: Histone acetylt 33.8 1.3E+02 0.0028 20.9 5.0 30 32-61 5-34 (80)
70 TIGR01280 xseB exodeoxyribonuc 33.6 1.5E+02 0.0032 19.9 5.3 42 48-89 3-45 (67)
71 PF01025 GrpE: GrpE; InterPro 33.6 1.4E+02 0.0031 22.9 5.8 13 5-17 19-31 (165)
72 PRK14157 heat shock protein Gr 33.2 2.1E+02 0.0046 24.1 7.0 15 4-18 84-98 (227)
73 KOG3232|consensus 33.2 2.7E+02 0.0058 22.7 13.5 104 18-135 49-160 (203)
74 PRK04778 septation ring format 32.9 4.3E+02 0.0093 25.0 15.2 45 90-139 377-425 (569)
75 PRK14066 exodeoxyribonuclease 31.9 1.1E+02 0.0024 21.1 4.3 43 47-89 5-48 (75)
76 PF00804 Syntaxin: Syntaxin; 30.9 1.3E+02 0.0028 20.6 4.8 48 92-141 7-54 (103)
77 PRK14139 heat shock protein Gr 30.3 3E+02 0.0065 22.4 8.7 11 5-15 40-50 (185)
78 PRK14068 exodeoxyribonuclease 30.0 1.2E+02 0.0025 21.1 4.2 43 47-89 7-50 (76)
79 PF02996 Prefoldin: Prefoldin 29.6 1.7E+02 0.0036 21.1 5.3 37 28-64 75-112 (120)
80 PRK14063 exodeoxyribonuclease 29.1 1.4E+02 0.0031 20.6 4.5 43 47-89 6-49 (76)
81 KOG1853|consensus 28.4 4E+02 0.0086 23.2 17.8 80 21-100 62-144 (333)
82 PRK14067 exodeoxyribonuclease 28.3 2.1E+02 0.0046 20.0 5.3 43 47-89 8-51 (80)
83 PRK14069 exodeoxyribonuclease 28.0 1.4E+02 0.0031 21.7 4.5 43 47-89 9-52 (95)
84 PRK09343 prefoldin subunit bet 27.5 2.6E+02 0.0057 20.8 7.0 17 93-109 68-84 (121)
85 PF10158 LOH1CR12: Tumour supp 27.1 2.9E+02 0.0062 21.1 9.1 21 47-67 81-101 (131)
86 KOG0971|consensus 27.0 7.2E+02 0.016 25.7 14.5 56 78-137 445-502 (1243)
87 KOG2180|consensus 27.0 6.4E+02 0.014 25.1 11.7 40 66-105 146-185 (793)
88 PRK14011 prefoldin subunit alp 25.8 2.5E+02 0.0054 21.8 5.9 37 28-64 86-123 (144)
89 PF14987 NADHdh_A3: NADH dehyd 24.9 54 0.0012 23.2 1.7 10 155-164 62-71 (84)
90 PRK15039 transcriptional repre 24.5 2.7E+02 0.0058 19.9 6.6 43 44-89 14-56 (90)
91 PRK14070 exodeoxyribonuclease 24.5 1.2E+02 0.0027 20.6 3.4 37 53-89 2-39 (69)
92 PRK14160 heat shock protein Gr 24.3 4.2E+02 0.009 22.0 9.9 10 5-14 62-71 (211)
93 COG1579 Zn-ribbon protein, pos 24.0 4.5E+02 0.0097 22.3 13.1 28 39-66 55-82 (239)
94 cd00890 Prefoldin Prefoldin is 23.8 2.9E+02 0.0062 20.0 6.4 40 34-73 4-43 (129)
95 PRK00977 exodeoxyribonuclease 23.4 2.6E+02 0.0057 19.4 5.6 42 48-89 12-54 (80)
96 PF10498 IFT57: Intra-flagella 22.9 5.6E+02 0.012 23.0 9.1 20 6-25 225-244 (359)
97 PF10359 Fmp27_WPPW: RNA pol I 22.3 3.3E+02 0.0071 25.2 6.9 23 1-23 167-189 (475)
98 PF10475 DUF2450: Protein of u 22.2 4.9E+02 0.011 22.1 13.6 90 28-117 49-140 (291)
99 PF03127 GAT: GAT domain; Int 22.0 1.3E+02 0.0028 21.5 3.4 70 55-138 6-77 (100)
100 cd00584 Prefoldin_alpha Prefol 21.7 3.3E+02 0.0072 20.0 5.9 37 28-64 85-122 (129)
101 COG1730 GIM5 Predicted prefold 21.6 1.4E+02 0.0031 23.3 3.8 42 35-76 12-53 (145)
102 PRK06798 fliD flagellar cappin 20.6 4.2E+02 0.0092 24.3 7.2 10 80-89 428-437 (440)
103 PRK10547 chemotaxis protein Ch 20.5 6E+02 0.013 24.8 8.5 55 40-94 6-60 (670)
104 PF09728 Taxilin: Myosin-like 20.3 5.8E+02 0.013 22.2 14.6 103 5-110 23-128 (309)
105 PF07743 HSCB_C: HSCB C-termin 20.0 2.8E+02 0.0061 18.5 7.2 42 7-48 34-76 (78)
No 1
>KOG1656|consensus
Probab=100.00 E-value=1e-46 Score=302.89 Aligned_cols=189 Identities=65% Similarity=0.916 Sum_probs=175.8
Q ss_pred ChhHHHHHHHHHHHHHHHH-HHHhchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy12999 1 MLIKKQEFLEKKIGEEINI-ARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAA 79 (191)
Q Consensus 1 ~L~kr~~~le~~I~~~~~~-ak~~~~k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~ 79 (191)
||.||+++|+++|.++... ||.|+.+||+.|+.||||||+||+||.++.+.+.+|+.+...||+|..|.+|+++|+.|+
T Consensus 32 mL~KKqe~Le~ki~~e~e~~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A 111 (221)
T KOG1656|consen 32 MLEKKQEFLEKKIEQEVENNARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAA 111 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence 6999999999999999666 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCCCCCCCCC
Q psy12999 80 DALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEI 159 (191)
Q Consensus 80 ~aLk~~~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~~~~lP~v 159 (191)
++||.+|+.|++|+|+++||+|.|+.+.++||+++|+.++++|.++|||||.+||++|++++++..++++..|++.||+|
T Consensus 112 ~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~v 191 (221)
T KOG1656|consen 112 KAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDKELLDIRAPPVPLPDV 191 (221)
T ss_pred HHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999888899999999999999999999999998888899999
Q ss_pred CCCCCCCCccchhcccccchHHHHHHHHhhhC
Q psy12999 160 PSTAPKDKPKEKASTKERSVEDEIRELEAWAS 191 (191)
Q Consensus 160 P~~~lp~~~~~~~~~~~~~e~~el~~l~a~~~ 191 (191)
|+..+|..++..+ ...++|++|++|++||+
T Consensus 192 Ps~~lPa~~~~~~--~a~E~d~~l~~l~~w~~ 221 (221)
T KOG1656|consen 192 PSIALPAKPASRP--KAEEDDDDLKELASWAN 221 (221)
T ss_pred CccccCcccccCC--CcchhhhHHHHHHHhcC
Confidence 9999998744322 22345556999999985
No 2
>PTZ00464 SNF-7-like protein; Provisional
Probab=100.00 E-value=3.7e-35 Score=241.86 Aligned_cols=167 Identities=23% Similarity=0.358 Sum_probs=144.1
Q ss_pred hhHHHHHHHHHHHH---HHHHHHHhch--h------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy12999 2 LIKKQEFLEKKIGE---EINIARTNGT--K------NKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTA 70 (191)
Q Consensus 2 L~kr~~~le~~I~~---~~~~ak~~~~--k------~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~ 70 (191)
|++|.+.|++||.. +...||++++ + +|++|+.|||+||+||++++++.++++||+++.++|+++++|..
T Consensus 23 l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~ 102 (211)
T PTZ00464 23 IGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKV 102 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777764 5567887764 2 28899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccC
Q psy12999 71 VLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLS 150 (191)
Q Consensus 71 v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~ 150 (191)
||+||++|+++||.+|++|++|+|+++||+|+|++++++||+++|++++++++++||+||++||++|+.+...+..+
T Consensus 103 vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~~~e~~~--- 179 (211)
T PTZ00464 103 QVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDMEKEADA--- 179 (211)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhccccc---
Confidence 99999999999999999999999999999999999999999999999886667899999999999999875332111
Q ss_pred CCCCCCCCCCCCCCCCCccch
Q psy12999 151 TPGGELPEIPSTAPKDKPKEK 171 (191)
Q Consensus 151 ~~~~~lP~vP~~~lp~~~~~~ 171 (191)
.-...+|+||++.+|+.|..+
T Consensus 180 ~~l~~~~~~p~~~~~~~~~~~ 200 (211)
T PTZ00464 180 SYLADALAVPGTKLPDVPTDE 200 (211)
T ss_pred hhhhccccCCCCCCCCCCCcc
Confidence 012468999999999888653
No 3
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=100.00 E-value=7e-35 Score=236.18 Aligned_cols=145 Identities=31% Similarity=0.439 Sum_probs=137.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhchhcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy12999 1 MLIKKQEFLEKKIGEEINIARTNGTKNK-RAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAA 79 (191)
Q Consensus 1 ~L~kr~~~le~~I~~~~~~ak~~~~k~k-~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~ 79 (191)
+|++|+.+|+.+|+.+...||+++++|+ .+|+.|||+||+||++++++.++++||++++++||+|++|..||+||++|+
T Consensus 38 ~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~ 117 (191)
T PTZ00446 38 ALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAA 117 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999987654 599999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhh
Q psy12999 80 DALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLL 147 (191)
Q Consensus 80 ~aLk~~~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~ 147 (191)
++||.+|+.|++|+|+++||+++|++++++||+++|+++++ +++||+||++||++|+++.++..++
T Consensus 118 ~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~--~~~DEdELe~ELe~Le~e~l~~~ll 183 (191)
T PTZ00446 118 NTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLL--NNVDDDEIDKELDLLKEQTMEEKLL 183 (191)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998742 5789999999999999999987754
No 4
>KOG2910|consensus
Probab=99.97 E-value=2.4e-30 Score=206.51 Aligned_cols=149 Identities=34% Similarity=0.455 Sum_probs=136.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhchh-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy12999 2 LIKKQEFLEKKIGEEINIARTNGTK-NKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAAD 80 (191)
Q Consensus 2 L~kr~~~le~~I~~~~~~ak~~~~k-~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~ 80 (191)
|.+++..+++.|+.+...||++++. .|.+|+++||+|++++..|.+.++++.||++++..||++...+.|+++|++||.
T Consensus 28 l~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~ 107 (209)
T KOG2910|consen 28 LKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGNE 107 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999984 578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCCCCCCCCCC
Q psy12999 81 ALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIP 160 (191)
Q Consensus 81 aLk~~~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~~~~lP~vP 160 (191)
+||++|+.|++|+|+++||+.+|++++++||+++|++.+. ..|+|++++||++|+.+...+ ..+|.||
T Consensus 108 ~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls---~~dEddi~~EldaLese~~~e---------~e~PevP 175 (209)
T KOG2910|consen 108 ALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLS---AEDEDDILAELDALESELEVE---------AELPEVP 175 (209)
T ss_pred HHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc---cccHHHHHHHHHHHHHHhhhh---------hhcCCCC
Confidence 9999999999999999999999999999999999999874 569999999999999886443 2367777
Q ss_pred CC
Q psy12999 161 ST 162 (191)
Q Consensus 161 ~~ 162 (191)
++
T Consensus 176 s~ 177 (209)
T KOG2910|consen 176 ST 177 (209)
T ss_pred CC
Confidence 77
No 5
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=99.95 E-value=2.9e-28 Score=192.80 Aligned_cols=158 Identities=39% Similarity=0.494 Sum_probs=120.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhch-hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy12999 2 LIKKQEFLEKKIGEEINIARTNGT-KNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAAD 80 (191)
Q Consensus 2 L~kr~~~le~~I~~~~~~ak~~~~-k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~ 80 (191)
|++++..|+.+|+.+..+||++++ +++..|+.|||++|++++++.++.+++.+|+.+..+|+++..+..|+.+|+.|++
T Consensus 13 L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~ 92 (171)
T PF03357_consen 13 LEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSK 92 (171)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999986 5688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCCCCCCCCCC
Q psy12999 81 ALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIP 160 (191)
Q Consensus 81 aLk~~~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~~~~lP~vP 160 (191)
+|+.+++.|++++|+++|++|++.++.+++|+++|+++++.++.+|++||++||++|..+...+.. +...+|+||
T Consensus 93 ~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~~~~-----~~~~lp~~P 167 (171)
T PF03357_consen 93 ALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEIEEEEE-----EKQQLPSVP 167 (171)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHHHTS----------------TTSTTCHHHHHHHCCCTTS-------SS-SS---
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhhhh-----ccccCCcCC
Confidence 999999999999999999999999999999999999887433568999999999999987654321 134688888
Q ss_pred CCCC
Q psy12999 161 STAP 164 (191)
Q Consensus 161 ~~~l 164 (191)
++++
T Consensus 168 ~~~~ 171 (171)
T PF03357_consen 168 STEL 171 (171)
T ss_dssp HH--
T ss_pred CCCC
Confidence 7653
No 6
>KOG1655|consensus
Probab=99.93 E-value=2.8e-24 Score=172.44 Aligned_cols=140 Identities=29% Similarity=0.393 Sum_probs=126.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh---chh-------c--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy12999 2 LIKKQEFLEKKIGEEINIARTN---GTK-------N--KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNT 69 (191)
Q Consensus 2 L~kr~~~le~~I~~~~~~ak~~---~~k-------~--k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~ 69 (191)
+++|.+++++||.+..+...+| +++ + |.+|+++||+||+||.|.+.+.++.+|+++..+++++.+.+.
T Consensus 24 v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq 103 (218)
T KOG1655|consen 24 VNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQ 103 (218)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 4788899999998665555443 321 1 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHh
Q psy12999 70 AVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEEL 142 (191)
Q Consensus 70 ~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l 142 (191)
.+|.||+.|++.||..++.|+||+|+++.|+|.+.++..+||+++|+++++++ ++|+++|++||++|.++..
T Consensus 104 ~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~p-eide~dL~aELdaL~~E~d 175 (218)
T KOG1655|consen 104 ATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTP-DIDEADLDAELDALGQELD 175 (218)
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcCHHHHHHHHHHHHhHhh
Confidence 99999999999999999999999999999999999999999999999999874 5999999999999987653
No 7
>KOG2911|consensus
Probab=99.92 E-value=2.2e-23 Score=184.21 Aligned_cols=155 Identities=30% Similarity=0.408 Sum_probs=138.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhch-hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy12999 2 LIKKQEFLEKKIGEEINIARTNGT-KNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAAD 80 (191)
Q Consensus 2 L~kr~~~le~~I~~~~~~ak~~~~-k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~ 80 (191)
|.+++++|+++|+....++|++++ +.|+.|+.|||+||++++.++++...+.||++++.+|.+|++|+.|+.||+.|+.
T Consensus 245 L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~AyksGs~ 324 (439)
T KOG2911|consen 245 LAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKSGSE 324 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHH
Confidence 689999999999999999999987 4578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCCCCCCCCC
Q psy12999 81 ALKAAHKH-MDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEI 159 (191)
Q Consensus 81 aLk~~~~~-~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~~~~lP~v 159 (191)
|||.++.. .+.|+|+++||+++|.++.++||+++|+.+...+.+++|++||.||+.|+.+.... ....+|..
T Consensus 325 alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L~~D~~k~-------e~~~lp~~ 397 (439)
T KOG2911|consen 325 ALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDLEADEKKN-------EDLVLPLN 397 (439)
T ss_pred HHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHHHhccccC-------CccCCCCC
Confidence 99999984 47999999999999999999999999998875556899999999999999765321 22346666
Q ss_pred CCCC
Q psy12999 160 PSTA 163 (191)
Q Consensus 160 P~~~ 163 (191)
|...
T Consensus 398 ~~sr 401 (439)
T KOG2911|consen 398 SVSR 401 (439)
T ss_pred CchH
Confidence 6543
No 8
>KOG3230|consensus
Probab=99.71 E-value=1.2e-15 Score=122.75 Aligned_cols=125 Identities=18% Similarity=0.344 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q psy12999 28 KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDV 107 (191)
Q Consensus 28 k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~ 107 (191)
|..|+.+.|.|.+ +.++.++..+|+.+...|.+.+++..+..+|+.++++|..+|++|++..+.++|.+|+.+.+.
T Consensus 59 KimAkdLvRtR~~----i~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~ 134 (224)
T KOG3230|consen 59 KIMAKDLVRTRRY----IKKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEI 134 (224)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH
Confidence 6678888877766 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCCCCCCCC
Q psy12999 108 AKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPE 158 (191)
Q Consensus 108 ~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~~~~lP~ 158 (191)
++...++++..++ +.+++++-++|-+.|.+++||+..+++.....++|+
T Consensus 135 Mdm~~Emm~daID--dal~~~edEEEtd~lvnqVLDEiGvdl~~qL~~~P~ 183 (224)
T KOG3230|consen 135 MDMKEEMMDDAID--DALGDDEDEEETDDLVNQVLDEIGVDLASQLSSLPS 183 (224)
T ss_pred HHHHHHHHHHHHH--HhhcccchhHHHHHHHHHHHHHHcccHHHHhccCcc
Confidence 9999999999875 567778889999999999999987776543445665
No 9
>KOG3231|consensus
Probab=99.42 E-value=1.2e-11 Score=97.57 Aligned_cols=162 Identities=19% Similarity=0.182 Sum_probs=122.3
Q ss_pred HHHHHhc-hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q psy12999 18 NIARTNG-TKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHD 96 (191)
Q Consensus 18 ~~ak~~~-~k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~ 96 (191)
..+|+.. .+|+..++-+-|+--.+.+|..+.++....|.++..+...++++..+..||....+.|+.+|+.|+++++-.
T Consensus 43 lEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~ 122 (208)
T KOG3231|consen 43 LEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQ 122 (208)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHH
Confidence 3444443 355555554446666677788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCCCCCCCCCCC-CCCCCCccchhccc
Q psy12999 97 MMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPS-TAPKDKPKEKASTK 175 (191)
Q Consensus 97 ~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~~~~lP~vP~-~~lp~~~~~~~~~~ 175 (191)
+|.+||-...+++...++++..++ +.+|...-++|-+++.++++|+..+++.+ +|..+|+ .++|...+.++ .
T Consensus 123 tmr~FQ~anmKMemTeEMiNDTLD--dild~sgDeeEs~aiVNqVLDEIGIEisg---Kma~~P~a~s~~~~st~ka--t 195 (208)
T KOG3231|consen 123 TMRNFQKANMKMEMTEEMINDTLD--DILDGSGDEEESQAIVNQVLDEIGIEISG---KMAKAPSARSLPSASTSKA--T 195 (208)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhHH--HHhcCCCcHHHHHHHHHHHHHHhhhhhcc---hhccCCccCCCCccccCCC--c
Confidence 999999999999999999988764 34555555789999999999998887764 4556664 23444333322 1
Q ss_pred ccchHHHHHHH
Q psy12999 176 ERSVEDEIREL 186 (191)
Q Consensus 176 ~~~e~~el~~l 186 (191)
.++=++.|.+|
T Consensus 196 ~~Die~QLa~L 206 (208)
T KOG3231|consen 196 ISDIERQLAAL 206 (208)
T ss_pred HHHHHHHHHHh
Confidence 23334455544
No 10
>KOG3229|consensus
Probab=99.27 E-value=4.7e-10 Score=91.32 Aligned_cols=125 Identities=14% Similarity=0.244 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q psy12999 29 RAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVA 108 (191)
Q Consensus 29 ~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~~ 108 (191)
-.|+.+.+.+|. ..+++.+..+|.++++.+..+-....+...|+.++.+|+.+|+-+.+..+..+|.+|..++.+.
T Consensus 62 iLAKEiv~srk~----v~Rly~sKAqlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKa 137 (227)
T KOG3229|consen 62 ILAKEIVQSRKA----VKRLYESKAQLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKA 137 (227)
T ss_pred HHHHHHHHHHHH----HHHHHHhHHHHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 366666666665 6799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccC-CCCCCCCCCCCCC
Q psy12999 109 KEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLS-TPGGELPEIPSTA 163 (191)
Q Consensus 109 ~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~-~~~~~lP~vP~~~ 163 (191)
.-|.+++...+. +..|.+|+++|.++-.+.++.+ +. ++...+|.+|...
T Consensus 138 GIIEEmvdet~e--sv~d~eemeEe~deEVdkIL~~----it~~~~~~~p~a~~~~ 187 (227)
T KOG3229|consen 138 GIIEEMVDETME--SVEDSEEMEEEADEEVDKILTE----ITGEKAGEAPLAVTAT 187 (227)
T ss_pred HHHHHHHHHHHh--cccchhhHHHHHHHHHHHHHHH----HhccccccCCcchHHH
Confidence 999999998764 3345555666665555555443 32 2334566666654
No 11
>KOG3232|consensus
Probab=98.71 E-value=6.1e-06 Score=65.94 Aligned_cols=128 Identities=18% Similarity=0.218 Sum_probs=94.6
Q ss_pred HHHHHHHHhchh-cHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCC
Q psy12999 15 EEINIARTNGTK-NKR----AAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHM 89 (191)
Q Consensus 15 ~~~~~ak~~~~k-~k~----~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~ 89 (191)
.+..++|+.+.+ |.. -|-.+.|+|.. --++......|..+...+++|.+...|-.+|....+.|-...+.|
T Consensus 34 ~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne----~~n~LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~alktm 109 (203)
T KOG3232|consen 34 AEKAKLKKAIQKGNMDVARIYAENAIRKKNE----AVNYLRLSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDSALKTM 109 (203)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456677777754 543 55666666543 335666777888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--CCCHHHHHHHHHHHHHHHhhHhhhccC
Q psy12999 90 DVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGH--DVDEDELEKELEALEQEELDKDLLKLS 150 (191)
Q Consensus 90 ~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~--~~DedeLe~EL~~L~~e~l~~~~~~~~ 150 (191)
|+++|-.+||.|..+-++.+--...+...++... ..+.+ +.+.|.+++.|+-.++..
T Consensus 110 NLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~----~Vd~Lmq~vADeaGlEln 168 (203)
T KOG3232|consen 110 NLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQG----DVDSLMQQVADEAGLELN 168 (203)
T ss_pred CHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChh----HHHHHHHHHHHHhchhhh
Confidence 9999999999999999988877666654332111 23433 445677787777666654
No 12
>KOG1655|consensus
Probab=97.81 E-value=0.00093 Score=54.53 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=107.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh---chhcHH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy12999 2 LIKKQEFLEKKIGEEINIARTN---GTKNKR--------AAIQALKRKKR-YEKQLQQIDGTLSTIEMQREALEGANTNT 69 (191)
Q Consensus 2 L~kr~~~le~~I~~~~~~ak~~---~~k~k~--------~A~~~Lk~KK~-~e~ql~k~~~~l~~Le~~~~~ie~a~~~~ 69 (191)
|..-+..++++-+....++.++ +.+-|. -|+..||.|.+ .-+|.--+.++..+|.++.|++++|....
T Consensus 17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~ 96 (218)
T KOG1655|consen 17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTA 96 (218)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4455777788888777777775 456544 37888988865 36677788999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhcCCC--HHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHH
Q psy12999 70 AVLTTMKNAADALKAAHKHMD--VNQVH-DMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQE 140 (191)
Q Consensus 70 ~v~~alk~g~~aLk~~~~~~~--id~Ve-~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e 140 (191)
+-++-=.....|||.-++.|. ..+|. +-++++|+++++.-+..+-|...++...+.-+.+..+.+.+|..-
T Consensus 97 e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELdaL 170 (218)
T KOG1655|consen 97 ESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPDIDEADLDAELDAL 170 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHH
Confidence 888888888899999888874 44444 456889999999999999999998876777775544444555543
No 13
>PTZ00464 SNF-7-like protein; Provisional
Probab=97.68 E-value=0.0031 Score=52.39 Aligned_cols=95 Identities=19% Similarity=0.199 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCC--HHHHH-HHHHHHHHHHHHHHHHHHHhcCCCC
Q psy12999 44 QLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMD--VNQVH-DMMDDIAEQQDVAKEISEAISNPVA 120 (191)
Q Consensus 44 ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~--id~Ve-~~mde~~e~~e~~~Ei~e~L~~~~~ 120 (191)
+.-.+.+++.++..++++|+...+..+....=...-.+|+.-++.|. ...|. +=++++.+.+..+-+.++-|+..++
T Consensus 69 ~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls 148 (211)
T PTZ00464 69 QKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMG 148 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345666667777777777776666666655555566666555442 12221 2234455555555555556666665
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy12999 121 FGHDVDEDELEKELEALE 138 (191)
Q Consensus 121 ~~~~~DedeLe~EL~~L~ 138 (191)
.+..+.++.-++||++-.
T Consensus 149 ~~~~~~~~~DEdELe~EL 166 (211)
T PTZ00464 149 RAYDVPDDIDEDEMLGEL 166 (211)
T ss_pred CCCCCCCCCCHHHHHHHH
Confidence 433333444556664433
No 14
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=97.46 E-value=0.012 Score=48.48 Aligned_cols=132 Identities=25% Similarity=0.288 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhch-hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhHH
Q psy12999 2 LIKKQEFLEKKIGEEINIARTNGT-KNKRAAIQALKRKKRYEKQLQQIDGTLSTIEM-----------QREALEGANTNT 69 (191)
Q Consensus 2 L~kr~~~le~~I~~~~~~ak~~~~-k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~-----------~~~~ie~a~~~~ 69 (191)
|++++..++..|..-...|+.++. ++-..|+.+|.+|..++.++..+..++..+.. +-.+|...+...
T Consensus 56 le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 56 LERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888886 45679999999999988887777665554444 344455666777
Q ss_pred HHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Q psy12999 70 AVLTTMKNAADALKAAHK---HMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALE 138 (191)
Q Consensus 70 ~v~~alk~g~~aLk~~~~---~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~ 138 (191)
.++.+-..+.++-+.++. ++++++....++.|.+.++...--.++.....+ +...++.+|+++.
T Consensus 136 ~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~~-----~~~~~e~~l~~~~ 202 (221)
T PF04012_consen 136 EELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASAELAD-----SDQDLEAELEELE 202 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHHhcc-----CcccHHHHHHHhc
Confidence 778777777777777765 445666677777777776666666666554321 2223777777766
No 15
>PRK10698 phage shock protein PspA; Provisional
Probab=97.43 E-value=0.025 Score=47.21 Aligned_cols=114 Identities=15% Similarity=0.178 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhchh-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhHH
Q psy12999 2 LIKKQEFLEKKIGEEINIARTNGTK-NKRAAIQALKRKKRYEKQLQQIDGTLSTI-----------EMQREALEGANTNT 69 (191)
Q Consensus 2 L~kr~~~le~~I~~~~~~ak~~~~k-~k~~A~~~Lk~KK~~e~ql~k~~~~l~~L-----------e~~~~~ie~a~~~~ 69 (191)
++++...++..|..-..+|+..+.+ +-..|+.+|.+|+.|..++..+..++... ..+-.+|+.++.-.
T Consensus 57 ~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~ 136 (222)
T PRK10698 57 LTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQ 136 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888888888864 55699999999999888766665544433 33445567778888
Q ss_pred HHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12999 70 AVLTTMKNAADALKAAHKHMD---VNQVHDMMDDIAEQQDVAKEISEAI 115 (191)
Q Consensus 70 ~v~~alk~g~~aLk~~~~~~~---id~Ve~~mde~~e~~e~~~Ei~e~L 115 (191)
.++.+=..+..+-+.+|..++ .+.--.-++.|.+-++..+--.+++
T Consensus 137 ~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~ 185 (222)
T PRK10698 137 QALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHh
Confidence 888888888888888886553 3333344444555555555444444
No 16
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=97.13 E-value=0.091 Score=43.57 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhchh-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhhhHH
Q psy12999 2 LIKKQEFLEKKIGEEINIARTNGTK-NKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE-----------ALEGANTNT 69 (191)
Q Consensus 2 L~kr~~~le~~I~~~~~~ak~~~~k-~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~-----------~ie~a~~~~ 69 (191)
+++++..+...+..-...|+..+.+ +-..|+.+|.+|+.++.++..+..++..+...+. .|+.++...
T Consensus 57 ~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~ 136 (219)
T TIGR02977 57 LERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQ 136 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888888888888864 4569999999999998888777665555444433 334445555
Q ss_pred HHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Q psy12999 70 AVLTTMKNAADALKAAHK---HMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALE 138 (191)
Q Consensus 70 ~v~~alk~g~~aLk~~~~---~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~ 138 (191)
.++.+=..+..+-..++. .++.+..-..++.|.+-++..+--.++... . +.+.|+++|+.|.
T Consensus 137 ~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~~~--~-----~~~~l~~~l~~l~ 201 (219)
T TIGR02977 137 KALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESYDL--G-----RKPSLEDEFAELE 201 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhhc--c-----CCCCHHHHHHHhc
Confidence 544444445666555554 344444444444454444444433333321 1 1233566666665
No 17
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=96.85 E-value=0.0046 Score=48.38 Aligned_cols=151 Identities=20% Similarity=0.245 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhchhcHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy12999 3 IKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRK-----KRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKN 77 (191)
Q Consensus 3 ~kr~~~le~~I~~~~~~ak~~~~k~k~~A~~~Lk~K-----K~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~ 77 (191)
...+..|++++..+...++.+ +..|+.+++.. +.|-+++-++..++.++.....+++......+.......
T Consensus 7 k~~~~~L~~~~~~le~~i~~~----~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~ 82 (171)
T PF03357_consen 7 KKTIRRLEKQIKRLEKKIKKL----EKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQ 82 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666555554 34567777543 445666777788999999999999999999988888888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHH--HHHHHH---HHHHHHHHHhcCCCCCCCCCC--HHHHHHHHHHHHHHHhhHhhhccC
Q psy12999 78 AADALKAAHKHMDVNQVHDMMD--DIAEQQ---DVAKEISEAISNPVAFGHDVD--EDELEKELEALEQEELDKDLLKLS 150 (191)
Q Consensus 78 g~~aLk~~~~~~~id~Ve~~md--e~~e~~---e~~~Ei~e~L~~~~~~~~~~D--edeLe~EL~~L~~e~l~~~~~~~~ 150 (191)
...+|+..++.| .++.+-++ ++.+.+ ...-+-.+.++..++ ..++ .+..++|+++...+...+ ..
T Consensus 83 v~~al~~~~~~L--k~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~--~~~~~~~~~dd~ele~eL~~l~~e----~~ 154 (171)
T PF03357_consen 83 VVKALKQSSKAL--KKINKQINLDKVEKLMDDFQEEMEDQDEISEALS--DSMDQVDDVDDEELEEELEQLEDE----IE 154 (171)
T ss_dssp HSSS----SHHH--HHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHC----CC
T ss_pred HHHHHHHHHHHH--HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--ccccCCCCCCHHHHHHHHHHHHHH----Hh
Confidence 888888766655 34443333 333333 333333444455554 2332 566777777766555442 22
Q ss_pred CCCCCCCCCCCCCCCCCccc
Q psy12999 151 TPGGELPEIPSTAPKDKPKE 170 (191)
Q Consensus 151 ~~~~~lP~vP~~~lp~~~~~ 170 (191)
. ...|...+|+.|+.
T Consensus 155 ~-----~~~~~~~lp~~P~~ 169 (171)
T PF03357_consen 155 E-----EEEEKQQLPSVPST 169 (171)
T ss_dssp T-----TS--SS-SS---HH
T ss_pred h-----hhhccccCCcCCCC
Confidence 1 11156677887763
No 18
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=96.73 E-value=0.13 Score=42.60 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHH-------H
Q psy12999 42 EKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMD-VNQVHDMMDDIAEQQDVAKEIS-------E 113 (191)
Q Consensus 42 e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~-id~Ve~~mde~~e~~e~~~Ei~-------e 113 (191)
-+.+-++.++.+.|...+..+.+.......--+|...+.-+......|+ +..|.++++.+.-+....+-.. +
T Consensus 41 ~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e 120 (204)
T COG5491 41 AEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDE 120 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666666555544444455555555555555565 6777777766655544443333 3
Q ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhc
Q psy12999 114 AISNPVAFGHDVDEDELEKELEALEQEELDKDLLK 148 (191)
Q Consensus 114 ~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~ 148 (191)
..+.+. . .+..+..++++++.+.++++..++
T Consensus 121 ~~~v~~---~-~~v~~~l~~lde~v~~v~pEi~le 151 (204)
T COG5491 121 LMDVVV---G-DPVLEDLEELDELVNKVLPEIGLE 151 (204)
T ss_pred HhccCc---c-chhhhhHHHHHHHHHhhchhhhhh
Confidence 332221 1 345556677777777777665443
No 19
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=96.14 E-value=0.66 Score=38.90 Aligned_cols=134 Identities=19% Similarity=0.200 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhch-hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhhHH
Q psy12999 2 LIKKQEFLEKKIGEEINIARTNGT-KNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQ-----------REALEGANTNT 69 (191)
Q Consensus 2 L~kr~~~le~~I~~~~~~ak~~~~-k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~-----------~~~ie~a~~~~ 69 (191)
|+++...+...++.....|+..+. ++-..|..+|-++..|++++..+...+..+... -.+|......+
T Consensus 57 ~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~ 136 (225)
T COG1842 57 LERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKK 136 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666677777777775 456799999999999988777665544444333 33445556666
Q ss_pred HHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Q psy12999 70 AVLTTMKNAADALKAAHK---HMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQ 139 (191)
Q Consensus 70 ~v~~alk~g~~aLk~~~~---~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~ 139 (191)
.++.+=..+.++-..+++ .++.+.....++.|.+-++....-.++.++-. ....+++++||+.+..
T Consensus 137 ~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~el~----~~~~~dl~~e~a~~~~ 205 (225)
T COG1842 137 EALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAAAELA----EGSGDDLDKEFAQAGA 205 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhHHhh----ccCcccHHHHHHHhcc
Confidence 777766666666666654 55555556666666666666665555555310 1123457778877664
No 20
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=95.00 E-value=0.88 Score=37.29 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCC--HHHHH-HHHHH
Q psy12999 29 RAAIQALKRKKR-----YEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMD--VNQVH-DMMDD 100 (191)
Q Consensus 29 ~~A~~~Lk~KK~-----~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~--id~Ve-~~mde 100 (191)
..|+.++++.+. +-++.-.+.+++.++.+++++|++...+.+....=...-.+|+.-++.+. -..+. +=+|+
T Consensus 55 ~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~ 134 (191)
T PTZ00446 55 IEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEK 134 (191)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 457777755442 33444556889999999999999999988887777777777777666552 12222 23567
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Q psy12999 101 IAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALE 138 (191)
Q Consensus 101 ~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~ 138 (191)
+.+.+..+-+.++-|++.++ ..+.++.-++||++-.
T Consensus 135 lmDei~E~~e~~~EIseaLs--~~~~~~~DEdELe~EL 170 (191)
T PTZ00446 135 IIDTIQENKDIQEEINQALS--FNLLNNVDDDEIDKEL 170 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHc--CCCCCCCCHHHHHHHH
Confidence 77777777778888888874 3443455677775444
No 21
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=94.41 E-value=2.5 Score=35.03 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=74.5
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc---CC-CHHHHHHHHHH
Q psy12999 25 TKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHK---HM-DVNQVHDMMDD 100 (191)
Q Consensus 25 ~k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~---~~-~id~Ve~~mde 100 (191)
+..+..+..++|-+++ ..++......|+.....+........+...|..++..|+.+.. -+ .++.+...|+-
T Consensus 35 ~~~~~l~~~~~~~~~~----~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~ 110 (204)
T COG5491 35 PNRRRLAEELYKLRKA----RSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALEL 110 (204)
T ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556655555544 5678888888888777788888888888888888888885543 22 25556666666
Q ss_pred HHHHHHHHHHHHHHhcC-CCCCCCCCCHHHHHHHHHHHHHHH
Q psy12999 101 IAEQQDVAKEISEAISN-PVAFGHDVDEDELEKELEALEQEE 141 (191)
Q Consensus 101 ~~e~~e~~~Ei~e~L~~-~~~~~~~~DedeLe~EL~~L~~e~ 141 (191)
.+.-++.+.+..+.... +. ..+.+++++++..+..+.
T Consensus 111 ~~~~le~m~e~~~v~~~~~v----~~~l~~lde~v~~v~pEi 148 (204)
T COG5491 111 VQLRLETMDELMDVVVGDPV----LEDLEELDELVNKVLPEI 148 (204)
T ss_pred HHHHHHHHHHHhccCccchh----hhhHHHHHHHHHhhchhh
Confidence 66666788777776665 43 246778888888777654
No 22
>KOG1656|consensus
Probab=94.02 E-value=3 Score=34.54 Aligned_cols=106 Identities=21% Similarity=0.244 Sum_probs=66.5
Q ss_pred HHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCC-HH------HHHHHHH
Q psy12999 31 AIQALKRKKRY-E---KQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMD-VN------QVHDMMD 99 (191)
Q Consensus 31 A~~~Lk~KK~~-e---~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~-id------~Ve~~md 99 (191)
|+.+..+-|+. - +..-.+.+++.+|.+++.+|++.... +..-...+.+|..+...-+ .- +||+ +|
T Consensus 52 A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~a---lEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDk-Vd 127 (221)
T KOG1656|consen 52 ARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREA---LENANTNTEVLDAMGSAAKAMKAAHKNMDIDK-VD 127 (221)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHcccccHHHHHHHHHHHHHHHHHHhccChhH-HH
Confidence 55555333332 2 22345678899999998888876655 4444445555555543221 22 3443 46
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHH
Q psy12999 100 DIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQE 140 (191)
Q Consensus 100 e~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e 140 (191)
++-+.+..+.++.+-|+..+..+-.+..+=-++||.+-..+
T Consensus 128 d~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELde 168 (221)
T KOG1656|consen 128 DLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDE 168 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHH
Confidence 77777888889999999998765556566667788655534
No 23
>KOG3229|consensus
Probab=90.57 E-value=9 Score=31.87 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHHHhhHhhhccC
Q psy12999 126 DEDELEKELEALEQEELDKDLLKLS 150 (191)
Q Consensus 126 DedeLe~EL~~L~~e~l~~~~~~~~ 150 (191)
.+++.++|.+.+.-+...+.+.+.+
T Consensus 157 meEe~deEVdkIL~~it~~~~~~~p 181 (227)
T KOG3229|consen 157 MEEEADEEVDKILTEITGEKAGEAP 181 (227)
T ss_pred HHHHHHHHHHHHHHHHhccccccCC
Confidence 5677888999888887776655554
No 24
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=79.21 E-value=12 Score=26.27 Aligned_cols=64 Identities=20% Similarity=0.272 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12999 41 YEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPV 119 (191)
Q Consensus 41 ~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~ 119 (191)
+++.|+.+......|+.+...|+.+..+...|. .. ++.-+.+++..-.-+..++-+.++|..+-
T Consensus 3 L~kEL~~Lr~IN~~ie~~~~~L~~a~~~~~~v~-------------~~--~~~t~~LLd~w~~IlSQte~~~~Ll~dp~ 66 (78)
T PF08651_consen 3 LEKELEQLRKINPVIEGLIETLRSAKSNMNRVQ-------------ET--VESTNTLLDKWIRILSQTEHTQRLLLDPE 66 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 455667777777777777666666665544333 22 35556677777777778888889888764
No 25
>KOG2911|consensus
Probab=75.38 E-value=47 Score=30.56 Aligned_cols=65 Identities=18% Similarity=0.093 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhchhcHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy12999 5 KQEFLEKKIGEEINIARTNGTKNKRAAIQALKR---K--KRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLT 73 (191)
Q Consensus 5 r~~~le~~I~~~~~~ak~~~~k~k~~A~~~Lk~---K--K~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~ 73 (191)
-+..|.++|+.....++++ +..++.+||. + ..|-+..-.+...+......+.++++.-+++....
T Consensus 241 ~~~~L~kqie~L~qeie~~----~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~ 310 (439)
T KOG2911|consen 241 ARAKLAKQIEFLEQEIEKS----KEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQ 310 (439)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455566666555555443 3334445432 1 22333444445555556666666666666644443
No 26
>PRK14162 heat shock protein GrpE; Provisional
Probab=75.14 E-value=24 Score=28.98 Aligned_cols=13 Identities=8% Similarity=0.202 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy12999 45 LQQIDGTLSTIEM 57 (191)
Q Consensus 45 l~k~~~~l~~Le~ 57 (191)
+..+..-++||+.
T Consensus 92 ~~~LLpV~DnLer 104 (194)
T PRK14162 92 AKDVLPAMDNLER 104 (194)
T ss_pred HHHHhhHHhHHHH
Confidence 3333444444443
No 27
>KOG3584|consensus
Probab=73.16 E-value=11 Score=32.96 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=26.8
Q ss_pred chhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12999 24 GTKNKRAAIQALKRKKRYEKQLQQIDGTLST 54 (191)
Q Consensus 24 ~~k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~ 54 (191)
+.|||..|+.|=|+||-|-+=|+++-.-|.|
T Consensus 296 LmKNREAARECRRKKKEYVKCLENRVAVLEN 326 (348)
T KOG3584|consen 296 LMKNREAARECRRKKKEYVKCLENRVAVLEN 326 (348)
T ss_pred HHhhHHHHHHHHHhHhHHHHHHHhHHHHHhc
Confidence 4589999999999999999998888776665
No 28
>KOG0994|consensus
Probab=72.40 E-value=52 Score=34.27 Aligned_cols=91 Identities=13% Similarity=0.247 Sum_probs=60.6
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q psy12999 26 KNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREAL-EGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQ 104 (191)
Q Consensus 26 k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~i-e~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~ 104 (191)
+-+.+|..+|-+-+.+..|.++...-+.+|-..+... .+-..+-+.++.+ +.++|..- =.++.+.|..++++|++.
T Consensus 1447 eA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~v--A~~vL~l~-lp~tpeqi~~L~~~I~e~ 1523 (1758)
T KOG0994|consen 1447 EAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEV--AEEVLALE-LPLTPEQIQQLTGEIQER 1523 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH--HHHHHhcc-CCCCHHHHHHHHHHHHHH
Confidence 3466787777666666666666666666654444332 2223344444444 34455531 134799999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q psy12999 105 QDVAKEISEAISNPV 119 (191)
Q Consensus 105 ~e~~~Ei~e~L~~~~ 119 (191)
++....|+.+|+.+.
T Consensus 1524 v~sL~nVd~IL~~T~ 1538 (1758)
T KOG0994|consen 1524 VASLPNVDAILSRTK 1538 (1758)
T ss_pred HHhcccHHHHHHhhh
Confidence 999999999999864
No 29
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=71.11 E-value=34 Score=24.20 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHhcCCCHH
Q psy12999 33 QALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAV-LTTMKNAADALKAAHKHMDVN 92 (191)
Q Consensus 33 ~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v-~~alk~g~~aLk~~~~~~~id 92 (191)
.+.|.+.++..++++....+..|.+....+...+..-.- -..++.|.+.++.+.+.--.|
T Consensus 9 ~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D 69 (92)
T PF03908_consen 9 SLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTD 69 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455778888888999999999999998888877766444 447888888888887653333
No 30
>PRK14146 heat shock protein GrpE; Provisional
Probab=66.97 E-value=45 Score=27.76 Aligned_cols=13 Identities=8% Similarity=0.181 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy12999 45 LQQIDGTLSTIEM 57 (191)
Q Consensus 45 l~k~~~~l~~Le~ 57 (191)
+..+...++||+.
T Consensus 107 ~~~lLpv~Dnler 119 (215)
T PRK14146 107 VSGFLNPIDNLER 119 (215)
T ss_pred HHHHhhHHhHHHH
Confidence 3333444444443
No 31
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=63.39 E-value=54 Score=27.69 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=19.0
Q ss_pred HHHH-hcCCCHHHHHHHHHHHHHHHHH
Q psy12999 82 LKAA-HKHMDVNQVHDMMDDIAEQQDV 107 (191)
Q Consensus 82 Lk~~-~~~~~id~Ve~~mde~~e~~e~ 107 (191)
|+.+ |..++++.|++|-+++.--++.
T Consensus 186 LR~L~N~~l~~e~V~~ikedieyYve~ 212 (233)
T PF04065_consen 186 LRLLDNDELDPEQVEDIKEDIEYYVES 212 (233)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHc
Confidence 4444 3578999999988888776664
No 32
>PRK14140 heat shock protein GrpE; Provisional
Probab=63.15 E-value=70 Score=26.18 Aligned_cols=8 Identities=38% Similarity=0.393 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy12999 7 EFLEKKIG 14 (191)
Q Consensus 7 ~~le~~I~ 14 (191)
..++.+|+
T Consensus 47 ~~l~~ei~ 54 (191)
T PRK14140 47 AELEAKLD 54 (191)
T ss_pred HHHHHHHH
Confidence 33333333
No 33
>PRK14163 heat shock protein GrpE; Provisional
Probab=61.13 E-value=86 Score=26.16 Aligned_cols=36 Identities=11% Similarity=0.209 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHH
Q psy12999 57 MQREALEGANTNTAVLTTMKNAADALKAAHKHMDVN 92 (191)
Q Consensus 57 ~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id 92 (191)
-++.+++.|..+..++.+++..-+-|..+.+..++.
T Consensus 98 pVlDnLerAl~~~~l~~Gv~mi~k~l~~~L~k~Gv~ 133 (214)
T PRK14163 98 PVLDDVGRAREHGELVGGFKSVAESLETTVAKLGLQ 133 (214)
T ss_pred hhHhHHHHHHhchhHHHHHHHHHHHHHHHHHHCCCE
Confidence 344444444444445666665555555554444433
No 34
>PRK14159 heat shock protein GrpE; Provisional
Probab=59.67 E-value=83 Score=25.39 Aligned_cols=14 Identities=14% Similarity=0.256 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q psy12999 45 LQQIDGTLSTIEMQ 58 (191)
Q Consensus 45 l~k~~~~l~~Le~~ 58 (191)
+..+.-.+++|+..
T Consensus 76 ~~~LLpV~DnlerA 89 (176)
T PRK14159 76 AKDLLDVLDALEAA 89 (176)
T ss_pred HHHHhhHHhHHHHH
Confidence 33344444444443
No 35
>PRK14155 heat shock protein GrpE; Provisional
Probab=59.05 E-value=1e+02 Score=25.51 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy12999 3 IKKQEFLEKKIGEEINIAR 21 (191)
Q Consensus 3 ~kr~~~le~~I~~~~~~ak 21 (191)
..++..++.++.....+..
T Consensus 19 ~~~l~~le~e~~elkd~~l 37 (208)
T PRK14155 19 AQEIEALKAEVAALKDQAL 37 (208)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566666665444443
No 36
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=56.39 E-value=1.8e+02 Score=27.49 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhchhc-------HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHH
Q psy12999 2 LIKKQEFLEKKIGEEINIARTNGTKN-------KRAAIQALKRKKRYEKQL-------------QQIDGTLSTIEMQREA 61 (191)
Q Consensus 2 L~kr~~~le~~I~~~~~~ak~~~~k~-------k~~A~~~Lk~KK~~e~ql-------------~k~~~~l~~Le~~~~~ 61 (191)
|..+|..|.++|.+....++..+.++ -..+..+..+-+.+...+ .++......+..+...
T Consensus 12 l~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~e 91 (593)
T PF06248_consen 12 LRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRE 91 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Confidence 56788888888888888887765432 224444443333333333 1222333334444444
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHh
Q psy12999 62 LEGANTNTAVLTTMKNAADALKAAH 86 (191)
Q Consensus 62 ie~a~~~~~v~~alk~g~~aLk~~~ 86 (191)
++....-..+++.+..-...|+.++
T Consensus 92 L~~~~~~l~~L~~L~~i~~~l~~~~ 116 (593)
T PF06248_consen 92 LEENEQLLEVLEQLQEIDELLEEVE 116 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555444
No 37
>PRK14148 heat shock protein GrpE; Provisional
Probab=56.06 E-value=97 Score=25.43 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy12999 3 IKKQEFLEKKIGEEINIART 22 (191)
Q Consensus 3 ~kr~~~le~~I~~~~~~ak~ 22 (191)
.+....++.+|......+.+
T Consensus 39 ~~e~~~l~~~l~~l~~e~~e 58 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQ 58 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34455555555554444443
No 38
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=54.12 E-value=62 Score=21.45 Aligned_cols=42 Identities=12% Similarity=0.227 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhc-hhcHHHHHHHHHHHHHHHHHHHHH
Q psy12999 7 EFLEKKIGEEINIARTNG-TKNKRAAIQALKRKKRYEKQLQQI 48 (191)
Q Consensus 7 ~~le~~I~~~~~~ak~~~-~k~k~~A~~~Lk~KK~~e~ql~k~ 48 (191)
+.|+.+.......|-+.- .++-..|+.++|-=|.|+..|...
T Consensus 2 ~~L~~R~~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~ 44 (59)
T smart00685 2 ALLQQRQEQYKQAALQAKRAGDEEKARRHLRIAKQFDDAIKAA 44 (59)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHHH
Confidence 356666665555554443 356678999999999988877654
No 39
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=53.80 E-value=1.7e+02 Score=26.36 Aligned_cols=42 Identities=10% Similarity=0.189 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q psy12999 66 NTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDV 107 (191)
Q Consensus 66 ~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~ 107 (191)
+.-.+++..|......+....+-.+++.|..+...+..-...
T Consensus 131 r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~L~~~i~~l~~~ 172 (383)
T PF04100_consen 131 RQYKEIASLLQAVKELLEHFKPYKSIPQIAELSKRIDQLQNE 172 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHH
Confidence 456788888888888887777777888888888777764433
No 40
>PRK14149 heat shock protein GrpE; Provisional
Probab=53.56 E-value=1e+02 Score=25.25 Aligned_cols=11 Identities=36% Similarity=0.217 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q psy12999 6 QEFLEKKIGEE 16 (191)
Q Consensus 6 ~~~le~~I~~~ 16 (191)
+..++.+++..
T Consensus 45 ~~~l~~e~~el 55 (191)
T PRK14149 45 KEDFELKYKEM 55 (191)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 41
>PF14282 FlxA: FlxA-like protein
Probab=53.31 E-value=87 Score=22.89 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12999 4 KKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQR 59 (191)
Q Consensus 4 kr~~~le~~I~~~~~~ak~~~~k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~ 59 (191)
..|..|.++|......++......-.-+...-.+++.+..+|..+..++..++...
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888777777765431111122233566777778888887777776654
No 42
>KOG2150|consensus
Probab=52.33 E-value=2.2e+02 Score=27.27 Aligned_cols=107 Identities=14% Similarity=0.194 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHH---HHHHHHHHhchhc--HHHHHHHHHHHHHHHHHHHHHH---------------------------H
Q psy12999 3 IKKQEFLEKKIG---EEINIARTNGTKN--KRAAIQALKRKKRYEKQLQQID---------------------------G 50 (191)
Q Consensus 3 ~kr~~~le~~I~---~~~~~ak~~~~k~--k~~A~~~Lk~KK~~e~ql~k~~---------------------------~ 50 (191)
+|.+..|-+.|. +.+..+|.++..+ |.. ..+|--||+.|...+++- .
T Consensus 41 eK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK-~~L~d~RrlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEke 119 (575)
T KOG2150|consen 41 EKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDK-DSLLDNRRLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEKE 119 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccccH-HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhccccccCChHHHH
Confidence 355566666665 4556666655322 111 334445555555444331 1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHH-------------HHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHH
Q psy12999 51 TLSTIEMQREALEGANTNTAVLTT-------------MKNAADALKAA-HKHMDVNQVHDMMDDIAEQQDVAKE 110 (191)
Q Consensus 51 ~l~~Le~~~~~ie~a~~~~~v~~a-------------lk~g~~aLk~~-~~~~~id~Ve~~mde~~e~~e~~~E 110 (191)
-..+++.+...|+..+.+.+-+++ ...---+|+.+ |.+++.+.|.++-|++..-.+....
T Consensus 120 k~d~~~wi~~~ideLe~q~d~~ea~~~e~~~erh~~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe~nqd 193 (575)
T KOG2150|consen 120 KRDTMDWISNQIDELERQVDSFEAEELERFIERHRWHQQKLELILRLLDNDELDPEAVNKVQDDITYYVESNQD 193 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHhhhhHHHHHHHHhccC
Confidence 234455555555555555555554 11111145554 6689999999999999887766554
No 43
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=51.92 E-value=1.3e+02 Score=24.48 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhch---hcHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHH
Q psy12999 4 KKQEFLEKKIGEEINIARTNGT---KNKRAAIQA-LK-RKKRYEKQLQQIDGTLSTIEMQREALEGANTN-TAVLTTMKN 77 (191)
Q Consensus 4 kr~~~le~~I~~~~~~ak~~~~---k~k~~A~~~-Lk-~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~-~~v~~alk~ 77 (191)
.++..|+.+++.....+..... +-|+++..- -. +|..+++.+..+...++||+..+..+...... +.++.++..
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpviDnlerAl~~~~~~~d~~~~l~~Gvem 122 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDNLERALEAAEDDKDPEKALLEGVEM 122 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 4566666666654333333211 112111111 11 23334555666666666666655444433221 134444444
Q ss_pred HHHHHHH
Q psy12999 78 AADALKA 84 (191)
Q Consensus 78 g~~aLk~ 84 (191)
..+.|..
T Consensus 123 ~~~~l~~ 129 (193)
T COG0576 123 TLDQLLD 129 (193)
T ss_pred HHHHHHH
Confidence 4333333
No 44
>KOG0972|consensus
Probab=50.51 E-value=1.8e+02 Score=25.75 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12999 91 VNQVHDMMDDIAEQQDVAKEISEAISNP 118 (191)
Q Consensus 91 id~Ve~~mde~~e~~e~~~Ei~e~L~~~ 118 (191)
..-++.+|+++.-..+.+++-...++.+
T Consensus 307 T~~L~eVm~e~E~~KqemEe~G~~msDG 334 (384)
T KOG0972|consen 307 TETLDEVMDEIEQLKQEMEEQGAKMSDG 334 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 5667888888888888888877777765
No 45
>KOG2910|consensus
Probab=49.65 E-value=1.5e+02 Score=24.52 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy12999 49 DGTLSTIEMQREALEGANTNTAVLTTMKNA 78 (191)
Q Consensus 49 ~~~l~~Le~~~~~ie~a~~~~~v~~alk~g 78 (191)
...+.+...++.+||+..++.+.-..-+..
T Consensus 69 E~Ll~qt~~qL~nlEqmvsdiEft~vqk~V 98 (209)
T KOG2910|consen 69 EELLTQTDNQLINLEQMVSDIEFTQVQKKV 98 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666665555544433333
No 46
>KOG0995|consensus
Probab=45.38 E-value=2.9e+02 Score=26.56 Aligned_cols=113 Identities=12% Similarity=0.186 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhchh-----cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----hhhHHH--
Q psy12999 3 IKKQEFLEKKIGEEINIARTNGTK-----NKRAAIQALKRKKR-YEKQLQQIDGTLSTIEMQREALEG----ANTNTA-- 70 (191)
Q Consensus 3 ~kr~~~le~~I~~~~~~ak~~~~k-----~k~~A~~~Lk~KK~-~e~ql~k~~~~l~~Le~~~~~ie~----a~~~~~-- 70 (191)
++.-..+-..|+.+....+....+ .-..+...||.++. ++.-+.++.+...++.......+. .+.+..
T Consensus 227 ~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~k 306 (581)
T KOG0995|consen 227 EKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEK 306 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 444555666666666666654211 11245666766655 666677776666655554433332 222221
Q ss_pred --HHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12999 71 --VLTTMKNAADALKAA--HKHMDVNQVHDMMDDIAEQQDVAKEISEAI 115 (191)
Q Consensus 71 --v~~alk~g~~aLk~~--~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L 115 (191)
=.+.++.-++-|+.. ++++++.+|+.+--+-.+.-...+.|+--+
T Consensus 307 EeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~ 355 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSEL 355 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 155777777888886 568999999998877776666666655444
No 47
>PRK14154 heat shock protein GrpE; Provisional
Probab=45.28 E-value=1.8e+02 Score=24.17 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q psy12999 5 KQEFLEKKIGE 15 (191)
Q Consensus 5 r~~~le~~I~~ 15 (191)
++..++.+++.
T Consensus 60 el~~le~e~~e 70 (208)
T PRK14154 60 QLTRMERKVDE 70 (208)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 48
>PRK14141 heat shock protein GrpE; Provisional
Probab=44.57 E-value=1.7e+02 Score=24.23 Aligned_cols=15 Identities=20% Similarity=-0.011 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHH
Q psy12999 3 IKKQEFLEKKIGEEI 17 (191)
Q Consensus 3 ~kr~~~le~~I~~~~ 17 (191)
+.++..++.+++...
T Consensus 37 ~~~i~~le~e~~elk 51 (209)
T PRK14141 37 PDPLEALKAENAELK 51 (209)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555433
No 49
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=44.22 E-value=1.1e+02 Score=21.33 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHH
Q psy12999 41 YEKQLQQIDGTLSTIEMQREALEGANTNTAVLT-TMKNAADALKAA 85 (191)
Q Consensus 41 ~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~-alk~g~~aLk~~ 85 (191)
++...+.+.+...+++.+..+++++..=.+.+- -|.++...-+-+
T Consensus 17 ie~~~~~L~~a~~~~~~v~~~~~~t~~LLd~w~~IlSQte~~~~Ll 62 (78)
T PF08651_consen 17 IEGLIETLRSAKSNMNRVQETVESTNTLLDKWIRILSQTEHTQRLL 62 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666665555444433 344444444444
No 50
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=44.04 E-value=82 Score=19.92 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhcCC
Q psy12999 50 GTLSTIEMQREALEGANTNT-AVLTTMKNAADALKAAHKHM 89 (191)
Q Consensus 50 ~~l~~Le~~~~~ie~a~~~~-~v~~alk~g~~aLk~~~~~~ 89 (191)
..+..|+.++.++++-.... +.+.-|+.|.+.++..++.+
T Consensus 3 e~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L 43 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERL 43 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777665554 45777888888877766544
No 51
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=43.44 E-value=1.2e+02 Score=28.83 Aligned_cols=69 Identities=20% Similarity=0.374 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC----CH-HHHHHHHHHHH
Q psy12999 69 TAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDV----DE-DELEKELEALE 138 (191)
Q Consensus 69 ~~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~----De-deLe~EL~~L~ 138 (191)
..++++++.....|+.+.+.++ .+|....+++........+++.-|......|.+. |. |.|.+||..+.
T Consensus 141 ~~l~~~in~~~~~L~~l~~~i~-~~I~~~V~~vNsLl~qIa~lN~qI~~~~~~g~~~NdLlDqRD~Lv~eLs~~i 214 (552)
T COG1256 141 QTLVNQINNTYEQLTDLRKDIN-AEIAATVDEVNSLLKQIADLNKQIRKVKAAGNDPNDLLDQRDQLVDELSQLI 214 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHhhc
Confidence 3456667777777777665554 2333444444444444444444443322111222 21 55666665555
No 52
>PRK14158 heat shock protein GrpE; Provisional
Probab=42.70 E-value=1.9e+02 Score=23.71 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q psy12999 5 KQEFLEKKIGEEIN 18 (191)
Q Consensus 5 r~~~le~~I~~~~~ 18 (191)
.+..++.++.....
T Consensus 41 ~~~~le~~l~~le~ 54 (194)
T PRK14158 41 RIKELEEALAAKEA 54 (194)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555544333
No 53
>PRK14143 heat shock protein GrpE; Provisional
Probab=42.53 E-value=2.1e+02 Score=24.20 Aligned_cols=19 Identities=11% Similarity=0.052 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12999 4 KKQEFLEKKIGEEINIART 22 (191)
Q Consensus 4 kr~~~le~~I~~~~~~ak~ 22 (191)
..+..|+.+|......++.
T Consensus 67 ~~~~~l~~el~~l~~e~~e 85 (238)
T PRK14143 67 ARLAQLEQELESLKQELEE 85 (238)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445555555544444443
No 54
>PRK14147 heat shock protein GrpE; Provisional
Probab=42.04 E-value=1.8e+02 Score=23.27 Aligned_cols=11 Identities=27% Similarity=0.241 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy12999 5 KQEFLEKKIGE 15 (191)
Q Consensus 5 r~~~le~~I~~ 15 (191)
++..|+.+++.
T Consensus 26 ~l~~l~~e~~e 36 (172)
T PRK14147 26 EVESLRSEIAL 36 (172)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 55
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=42.04 E-value=1.6e+02 Score=22.82 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q psy12999 37 RKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAH 86 (191)
Q Consensus 37 ~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~ 86 (191)
+|-.|.+.+.++...+...-++-..+........+..-+..-+.-|+.+.
T Consensus 95 kk~~y~~Ki~~le~~l~~f~~v~~q~~~~~D~~~l~~~~~e~~~kl~~i~ 144 (147)
T PF05659_consen 95 KKPRYARKIEELEESLRRFIQVDLQLHQLRDIKELLAKMSEMNTKLDDIT 144 (147)
T ss_pred hhHhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456777777777777776666666666676666666666555555543
No 56
>KOG3230|consensus
Probab=41.82 E-value=2e+02 Score=23.86 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH--HhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12999 46 QQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKA--AHKHM-DVNQVHDMMDDIAEQQDVAKEISEAIS 116 (191)
Q Consensus 46 ~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~--~~~~~-~id~Ve~~mde~~e~~e~~~Ei~e~L~ 116 (191)
.++.+-...++++..+-.-++.-+-+-++|..-|+-|.- +.+-+ .+++-..+||-.+|.+. +-|+++|+
T Consensus 80 aqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~--daIDdal~ 151 (224)
T KOG3230|consen 80 AQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMD--DAIDDALG 151 (224)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhc
Confidence 345555566666666666677777777777777766543 22322 35666666665555443 23555554
No 57
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=41.14 E-value=1.8e+02 Score=22.90 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12999 90 DVNQVHDMMDDIAEQQDVAKEISEAIS 116 (191)
Q Consensus 90 ~id~Ve~~mde~~e~~e~~~Ei~e~L~ 116 (191)
.++.++++.|.+.|..+..+..-+.++
T Consensus 87 kv~~~E~L~d~v~eLkeel~~el~~l~ 113 (146)
T PF05852_consen 87 KVEDLEKLTDRVEELKEELEFELERLQ 113 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999988887777777775
No 58
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=40.83 E-value=3.2e+02 Score=25.83 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=15.9
Q ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy12999 112 SEAISNPVAFGHDVDEDELEKELEALEQEE 141 (191)
Q Consensus 112 ~e~L~~~~~~~~~~DedeLe~EL~~L~~e~ 141 (191)
.++..+++ .++...++.++..|....
T Consensus 240 ~~m~~~gy----~~~~~~i~~~i~~l~~~i 265 (569)
T PRK04778 240 RELVEEGY----HLDHLDIEKEIQDLKEQI 265 (569)
T ss_pred HHHHHcCC----CCCCCChHHHHHHHHHHH
Confidence 44555665 355566777777777544
No 59
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=40.50 E-value=2.3e+02 Score=26.85 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhchhcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12999 3 IKKQEFLEKKIGEEINIARTNGTKNKRA---AIQALKRKKRYEKQLQQIDGTLSTIEMQR 59 (191)
Q Consensus 3 ~kr~~~le~~I~~~~~~ak~~~~k~k~~---A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~ 59 (191)
.+||..|-.++.....++.-+....+.. -...-+.|+....+|....+.+..|+.-+
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL 478 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDEL 478 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777666666666654432221 12223444555555555555555555443
No 60
>PRK14151 heat shock protein GrpE; Provisional
Probab=39.73 E-value=2e+02 Score=23.12 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q psy12999 5 KQEFLEKKIGE 15 (191)
Q Consensus 5 r~~~le~~I~~ 15 (191)
++..++.+++.
T Consensus 28 ~i~~le~e~~e 38 (176)
T PRK14151 28 RVQELEEQLAA 38 (176)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 61
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.79 E-value=1.5e+02 Score=21.33 Aligned_cols=91 Identities=15% Similarity=0.230 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12999 39 KRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNP 118 (191)
Q Consensus 39 K~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~ 118 (191)
..|+.++..+...+..|+..+.-.+.+... +..+..+..+.+.+-..+=--+++++...+.+..+..+.--.-+...
T Consensus 9 q~l~~~~~~l~~~~~~l~~~~~E~~~v~~E---L~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~ 85 (105)
T cd00632 9 QQLQQQLQAYIVQRQKVEAQLNENKKALEE---LEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQ 85 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666655444444333 33333555666655443322345555555555555554444444332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH
Q psy12999 119 VAFGHDVDEDELEKELEALEQE 140 (191)
Q Consensus 119 ~~~~~~~DedeLe~EL~~L~~e 140 (191)
-+++..++..+...
T Consensus 86 --------~~~l~~~~~elk~~ 99 (105)
T cd00632 86 --------EEDLQEKLKELQEK 99 (105)
T ss_pred --------HHHHHHHHHHHHHH
Confidence 34566666666644
No 62
>PRK14144 heat shock protein GrpE; Provisional
Probab=37.85 E-value=2.3e+02 Score=23.33 Aligned_cols=9 Identities=22% Similarity=0.254 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q psy12999 7 EFLEKKIGE 15 (191)
Q Consensus 7 ~~le~~I~~ 15 (191)
..++.+|..
T Consensus 48 ~~l~~~i~~ 56 (199)
T PRK14144 48 TALEEQLTL 56 (199)
T ss_pred HHHHHHHHH
Confidence 344444443
No 63
>PRK14145 heat shock protein GrpE; Provisional
Probab=36.30 E-value=2.4e+02 Score=23.13 Aligned_cols=10 Identities=30% Similarity=0.375 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q psy12999 6 QEFLEKKIGE 15 (191)
Q Consensus 6 ~~~le~~I~~ 15 (191)
+..|..++..
T Consensus 47 ~~~l~~~l~~ 56 (196)
T PRK14145 47 IEELKQKLQQ 56 (196)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 64
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=35.35 E-value=99 Score=21.35 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhcCC
Q psy12999 47 QIDGTLSTIEMQREALEGANTNT-AVLTTMKNAADALKAAHKHM 89 (191)
Q Consensus 47 k~~~~l~~Le~~~~~ie~a~~~~-~v~~alk~g~~aLk~~~~~~ 89 (191)
.+...+..|+.++..|++..... +.+..|+.|.+.++..++.+
T Consensus 7 sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~c~~~L 50 (75)
T PRK14064 7 TFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKL 50 (75)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888777664 56888999988888876655
No 65
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=35.34 E-value=4.7e+02 Score=26.21 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHH
Q psy12999 3 IKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQI----DGTLSTIEMQREALEGANTNTAVL 72 (191)
Q Consensus 3 ~kr~~~le~~I~~~~~~ak~~~~k~k~~A~~~Lk~KK~~e~ql~k~----~~~l~~Le~~~~~ie~a~~~~~v~ 72 (191)
..+.+.|-+.|+.....-|.+..-=+..=..+|..|+.++-+..++ ...+.+++...++++.+.....++
T Consensus 454 q~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL 527 (861)
T PF15254_consen 454 QSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQIL 527 (861)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHh
Confidence 3444444455544444444433211222345666666666554443 567777777777777776654443
No 66
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=34.94 E-value=59 Score=19.02 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12999 92 NQVHDMMDDIAEQQDVAK 109 (191)
Q Consensus 92 d~Ve~~mde~~e~~e~~~ 109 (191)
+++++++|+|.+.++..-
T Consensus 3 ~~~D~lLDeId~vLe~NA 20 (33)
T TIGR03687 3 EGVDDLLDEIDGVLESNA 20 (33)
T ss_pred chHHHHHHHHHHHHHHhH
Confidence 467777777777766554
No 67
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=34.31 E-value=4.1e+02 Score=25.14 Aligned_cols=66 Identities=18% Similarity=0.349 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCCCCCHHHHHHHHHHHHHH
Q psy12999 70 AVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKE-ISEAISNPVAFGHDVDEDELEKELEALEQE 140 (191)
Q Consensus 70 ~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~~~E-i~e~L~~~~~~~~~~DedeLe~EL~~L~~e 140 (191)
+++..++.....|..+...+ +.=+..+-..+-++++.... ..++..+++. ++..+++.++..+...
T Consensus 194 eil~~l~~~~~~l~~~~e~I-P~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~----l~~~~i~~~i~~i~~~ 260 (560)
T PF06160_consen 194 EILEKLKEETDELEEIMEDI-PKLYKELQKEFPDQLEELKEGYREMEEEGYY----LEHLDIEEEIEQIEEQ 260 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHhHHHHHHHHHHHHHHHHCCCC----CCCCCHHHHHHHHHHH
Confidence 44555555555555544333 12333344444455544443 4555566653 4445566777766643
No 68
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=34.06 E-value=1.8e+02 Score=21.07 Aligned_cols=92 Identities=14% Similarity=0.272 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12999 37 RKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAIS 116 (191)
Q Consensus 37 ~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~ 116 (191)
.-..+.+++..+..++..|+..+ .........++.+..++.+.+.+-+-+=.-+++++..++.+.++..+.--..+.
T Consensus 11 ~~q~~q~~~~~l~~q~~~le~~~---~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~le 87 (110)
T TIGR02338 11 QLQQLQQQLQAVATQKQQVEAQL---KEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQ 87 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555543 333344455666666777777775544334577777777777777655555544
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH
Q psy12999 117 NPVAFGHDVDEDELEKELEALEQ 139 (191)
Q Consensus 117 ~~~~~~~~~DedeLe~EL~~L~~ 139 (191)
.. ...+...+.++..
T Consensus 88 k~--------~~~l~~~l~e~q~ 102 (110)
T TIGR02338 88 RQ--------EERLREQLKELQE 102 (110)
T ss_pred HH--------HHHHHHHHHHHHH
Confidence 32 2345555555553
No 69
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=33.82 E-value=1.3e+02 Score=20.94 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12999 32 IQALKRKKRYEKQLQQIDGTLSTIEMQREA 61 (191)
Q Consensus 32 ~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ 61 (191)
..++.+|+.++..|..+..++..+|+.-+.
T Consensus 5 ~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 5 KELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888888888877654
No 70
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=33.58 E-value=1.5e+02 Score=19.90 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhcCC
Q psy12999 48 IDGTLSTIEMQREALEGANTNT-AVLTTMKNAADALKAAHKHM 89 (191)
Q Consensus 48 ~~~~l~~Le~~~~~ie~a~~~~-~v~~alk~g~~aLk~~~~~~ 89 (191)
+...+..|+.++.++++-.... +.+..|+.|.+.++..++.+
T Consensus 3 fEe~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c~~~L 45 (67)
T TIGR01280 3 FEEALSELEQIVQKLESGDLALEEALNLFERGMALARRCEKKL 45 (67)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888777664 56788888888888876655
No 71
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=33.56 E-value=1.4e+02 Score=22.87 Aligned_cols=13 Identities=46% Similarity=0.340 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q psy12999 5 KQEFLEKKIGEEI 17 (191)
Q Consensus 5 r~~~le~~I~~~~ 17 (191)
.+..++.+++...
T Consensus 19 ~l~~l~~~~~~l~ 31 (165)
T PF01025_consen 19 ELEELEKEIEELK 31 (165)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444555554443
No 72
>PRK14157 heat shock protein GrpE; Provisional
Probab=33.22 E-value=2.1e+02 Score=24.08 Aligned_cols=15 Identities=13% Similarity=0.074 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy12999 4 KKQEFLEKKIGEEIN 18 (191)
Q Consensus 4 kr~~~le~~I~~~~~ 18 (191)
.++..++.++.....
T Consensus 84 ~~l~~le~e~~e~kd 98 (227)
T PRK14157 84 TPLGQAKKEAAEYLE 98 (227)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555554433
No 73
>KOG3232|consensus
Probab=33.19 E-value=2.7e+02 Score=22.73 Aligned_cols=104 Identities=18% Similarity=0.344 Sum_probs=58.4
Q ss_pred HHHHHhch---hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh-cCCC--H
Q psy12999 18 NIARTNGT---KNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAH-KHMD--V 91 (191)
Q Consensus 18 ~~ak~~~~---k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~-~~~~--i 91 (191)
..||-|.. +.|..|..+||--- ++..--..+++....-.-..+-..|+++|..+ |+.+| ..|+ .
T Consensus 49 dvArIyAeNAIRkkne~~n~Lrlss-------RvDAVaaRvqTavtmr~Vt~sM~gVvK~md~a---lktmNLekis~~M 118 (203)
T KOG3232|consen 49 DVARIYAENAIRKKNEAVNYLRLSS-------RVDAVAARVQTAVTMRKVTKSMAGVVKSMDSA---LKTMNLEKISQLM 118 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHH
Confidence 34555542 34668999997643 34444444444443333344556667777655 55554 2333 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCCHHHHHHHHH
Q psy12999 92 NQVHDMMDDIAEQQDVAKEISEAISNP--VAFGHDVDEDELEKELE 135 (191)
Q Consensus 92 d~Ve~~mde~~e~~e~~~Ei~e~L~~~--~~~~~~~DedeLe~EL~ 135 (191)
|+.+.-.+++.=+...+ ..+++++ +.+ +.-+-|.|..+..
T Consensus 119 DkFE~qFedldvqt~~m---e~~m~~st~l~t-pq~~Vd~Lmq~vA 160 (203)
T KOG3232|consen 119 DKFEKQFEDLDVQTEVM---EKAMSGSTALST-PQGDVDSLMQQVA 160 (203)
T ss_pred HHHHHHhhhhhhHHHHH---HHhccCcccccC-ChhHHHHHHHHHH
Confidence 78887777776655444 3555432 233 3446677777764
No 74
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=32.95 E-value=4.3e+02 Score=24.98 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHHH----HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Q psy12999 90 DVNQVHDMMDDIAEQQ----DVAKEISEAISNPVAFGHDVDEDELEKELEALEQ 139 (191)
Q Consensus 90 ~id~Ve~~mde~~e~~----e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~ 139 (191)
....|.+-++++.+.+ ..+.++.+.|..- .-++.+...-|..+..
T Consensus 377 ~ysel~e~leel~e~leeie~eq~ei~e~l~~L-----rk~E~eAr~kL~~~~~ 425 (569)
T PRK04778 377 AYSELQEELEEILKQLEEIEKEQEKLSEMLQGL-----RKDELEAREKLERYRN 425 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 4555555555444444 4444444444431 1244445555555543
No 75
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=31.91 E-value=1.1e+02 Score=21.13 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhcCC
Q psy12999 47 QIDGTLSTIEMQREALEGANTNT-AVLTTMKNAADALKAAHKHM 89 (191)
Q Consensus 47 k~~~~l~~Le~~~~~ie~a~~~~-~v~~alk~g~~aLk~~~~~~ 89 (191)
++...+..|+.++..+++-.... +.+..|+.|.+.++..++.+
T Consensus 5 ~fEeal~~LE~IV~~LE~g~l~Leesl~lyeeG~~L~k~C~~~L 48 (75)
T PRK14066 5 KFETALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCSKKL 48 (75)
T ss_pred cHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888877664 56889999999888887665
No 76
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=30.90 E-value=1.3e+02 Score=20.56 Aligned_cols=48 Identities=23% Similarity=0.432 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy12999 92 NQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEE 141 (191)
Q Consensus 92 d~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~ 141 (191)
+.|+.+-..|..-....++|...-...+.. .+ ++.++..|++.|..+.
T Consensus 7 ~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~-~~-~d~~~~~el~~l~~~i 54 (103)
T PF00804_consen 7 DEVQEIREDIDKIKEKLNELRKLHKKILSS-PD-QDSELKRELDELTDEI 54 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC-cchhHHHHHHHHHHHH
Confidence 344444444444444555555544433321 12 3468899999988764
No 77
>PRK14139 heat shock protein GrpE; Provisional
Probab=30.29 E-value=3e+02 Score=22.36 Aligned_cols=11 Identities=27% Similarity=0.129 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q psy12999 5 KQEFLEKKIGE 15 (191)
Q Consensus 5 r~~~le~~I~~ 15 (191)
++..++.+++.
T Consensus 40 ~l~~le~e~~e 50 (185)
T PRK14139 40 ELAEAEAKAAE 50 (185)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 78
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=29.99 E-value=1.2e+02 Score=21.09 Aligned_cols=43 Identities=9% Similarity=0.166 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhcCC
Q psy12999 47 QIDGTLSTIEMQREALEGANTNT-AVLTTMKNAADALKAAHKHM 89 (191)
Q Consensus 47 k~~~~l~~Le~~~~~ie~a~~~~-~v~~alk~g~~aLk~~~~~~ 89 (191)
.+...+..|+.++..|++-.... +.+..|+.|.+.++..+..+
T Consensus 7 sfEeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~k~C~~~L 50 (76)
T PRK14068 7 SFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTL 50 (76)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888877664 56888999988888876654
No 79
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=29.56 E-value=1.7e+02 Score=21.13 Aligned_cols=37 Identities=38% Similarity=0.502 Sum_probs=26.5
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12999 28 KRAAIQAL-KRKKRYEKQLQQIDGTLSTIEMQREALEG 64 (191)
Q Consensus 28 k~~A~~~L-k~KK~~e~ql~k~~~~l~~Le~~~~~ie~ 64 (191)
...|..+| ||.+.++.+++++...+..+...+..++.
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~ 112 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQ 112 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777 55577788888888888887776655443
No 80
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=29.15 E-value=1.4e+02 Score=20.59 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhcCC
Q psy12999 47 QIDGTLSTIEMQREALEGANTNT-AVLTTMKNAADALKAAHKHM 89 (191)
Q Consensus 47 k~~~~l~~Le~~~~~ie~a~~~~-~v~~alk~g~~aLk~~~~~~ 89 (191)
.+...+..|+.++..+++-.... +.+..|+.|.+.++..++.+
T Consensus 6 sfEeal~~LE~Iv~~LE~~~l~Leesl~lyeeG~~L~k~C~~~L 49 (76)
T PRK14063 6 SFEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKL 49 (76)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778888888888777664 56888999998888876655
No 81
>KOG1853|consensus
Probab=28.37 E-value=4e+02 Score=23.17 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=48.5
Q ss_pred HHhchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHh--cCCCHHHHHHH
Q psy12999 21 RTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANT-NTAVLTTMKNAADALKAAH--KHMDVNQVHDM 97 (191)
Q Consensus 21 k~~~~k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~-~~~v~~alk~g~~aLk~~~--~~~~id~Ve~~ 97 (191)
|.+...|.+.-...-+-|-.++.|..+.+.+...|+.-+.++-.... -...+.-|.++|+.|...- ..+++++.+.-
T Consensus 62 rdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqr 141 (333)
T KOG1853|consen 62 RDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQR 141 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHH
Confidence 33334454455555566666677777777777766665544443322 2456778888888887753 35577777655
Q ss_pred HHH
Q psy12999 98 MDD 100 (191)
Q Consensus 98 mde 100 (191)
++.
T Consensus 142 Lnq 144 (333)
T KOG1853|consen 142 LNQ 144 (333)
T ss_pred HHH
Confidence 544
No 82
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.26 E-value=2.1e+02 Score=19.98 Aligned_cols=43 Identities=16% Similarity=0.296 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhcCC
Q psy12999 47 QIDGTLSTIEMQREALEGANTNT-AVLTTMKNAADALKAAHKHM 89 (191)
Q Consensus 47 k~~~~l~~Le~~~~~ie~a~~~~-~v~~alk~g~~aLk~~~~~~ 89 (191)
.+...+..|+.++..+++-.... +.+..|+.|...++..++.+
T Consensus 8 sfEeal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~k~C~~~L 51 (80)
T PRK14067 8 DFEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLARACREQL 51 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677778888888777664 56888999998888876655
No 83
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.98 E-value=1.4e+02 Score=21.68 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhcCC
Q psy12999 47 QIDGTLSTIEMQREALEGANTNT-AVLTTMKNAADALKAAHKHM 89 (191)
Q Consensus 47 k~~~~l~~Le~~~~~ie~a~~~~-~v~~alk~g~~aLk~~~~~~ 89 (191)
.+...+..|+.++..|++-.... +.+..|+.|...++..+..+
T Consensus 9 sFEeal~~LEeIV~~LEsgdl~LEesl~lyeeGv~L~k~C~~~L 52 (95)
T PRK14069 9 SFEDALRELEQIAEKLERQDFSLEESLKAYERGMELKKICSGIL 52 (95)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777888888888777664 56788888888888776554
No 84
>PRK09343 prefoldin subunit beta; Provisional
Probab=27.53 E-value=2.6e+02 Score=20.80 Aligned_cols=17 Identities=6% Similarity=0.309 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12999 93 QVHDMMDDIAEQQDVAK 109 (191)
Q Consensus 93 ~Ve~~mde~~e~~e~~~ 109 (191)
+.+++..++.+..+..+
T Consensus 68 d~~e~~~~l~~r~E~ie 84 (121)
T PRK09343 68 DKTKVEKELKERKELLE 84 (121)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 85
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=27.14 E-value=2.9e+02 Score=21.14 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy12999 47 QIDGTLSTIEMQREALEGANT 67 (191)
Q Consensus 47 k~~~~l~~Le~~~~~ie~a~~ 67 (191)
++.+.+..|..+...|...+.
T Consensus 81 k~ae~L~kv~els~~L~~~~~ 101 (131)
T PF10158_consen 81 KFAEQLEKVNELSQQLSRCQS 101 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 86
>KOG0971|consensus
Probab=27.04 E-value=7.2e+02 Score=25.70 Aligned_cols=56 Identities=14% Similarity=0.311 Sum_probs=34.9
Q ss_pred HHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Q psy12999 78 AADALKAA--HKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEAL 137 (191)
Q Consensus 78 g~~aLk~~--~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L 137 (191)
|+.+|-.. -+.+++++==.++.+.-..++-.++|++-|..+. -.-+-+|-+||+.+
T Consensus 445 GAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn----~ele~DLreEld~~ 502 (1243)
T KOG0971|consen 445 GAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESN----RELELDLREELDMA 502 (1243)
T ss_pred cHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 44444443 3577776655666666667778888888776542 22345677777766
No 87
>KOG2180|consensus
Probab=26.96 E-value=6.4e+02 Score=25.10 Aligned_cols=40 Identities=8% Similarity=0.158 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q psy12999 66 NTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQ 105 (191)
Q Consensus 66 ~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~ 105 (191)
+.-.++++-|+.-..++.-..+-.++|+|..+...+.+-.
T Consensus 146 r~y~e~a~~lqai~~ll~~F~~Yk~v~~I~~Ls~si~~~k 185 (793)
T KOG2180|consen 146 RSYGEAASPLQAILQLLNHFIAYKSVDEIANLSESIDKLK 185 (793)
T ss_pred ccHHHHHhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3456788888888888887777788898888877666544
No 88
>PRK14011 prefoldin subunit alpha; Provisional
Probab=25.81 E-value=2.5e+02 Score=21.80 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=26.3
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12999 28 KRAAIQALK-RKKRYEKQLQQIDGTLSTIEMQREALEG 64 (191)
Q Consensus 28 k~~A~~~Lk-~KK~~e~ql~k~~~~l~~Le~~~~~ie~ 64 (191)
...|..+++ +++.+++.+.++...+..+...+..|..
T Consensus 86 ~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~ 123 (144)
T PRK14011 86 VSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRK 123 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346888884 5566788888888888777777666553
No 89
>PF14987 NADHdh_A3: NADH dehydrogenase 1 alpha subcomplex subunit 3
Probab=24.86 E-value=54 Score=23.18 Aligned_cols=10 Identities=30% Similarity=0.889 Sum_probs=8.2
Q ss_pred CCCCCCCCCC
Q psy12999 155 ELPEIPSTAP 164 (191)
Q Consensus 155 ~lP~vP~~~l 164 (191)
+||+|||++-
T Consensus 62 nmpdvPshPq 71 (84)
T PF14987_consen 62 NMPDVPSHPQ 71 (84)
T ss_pred CCCCCCCCCC
Confidence 6999998864
No 90
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=24.52 E-value=2.7e+02 Score=19.91 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCC
Q psy12999 44 QLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHM 89 (191)
Q Consensus 44 ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~ 89 (191)
.|.++.||..-|+.+ |+.-..=.+|+..+.+...||..+...+
T Consensus 14 RL~RIeGQv~gI~~M---iee~~~C~dIl~Ql~Avr~Al~~~~~~v 56 (90)
T PRK15039 14 RASKIQGQVVALKKM---LDEPHECAAVLQQIAAIRGAVNGLMREV 56 (90)
T ss_pred HHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554444444 5556666788888888888777665443
No 91
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.45 E-value=1.2e+02 Score=20.62 Aligned_cols=37 Identities=8% Similarity=0.169 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhcCC
Q psy12999 53 STIEMQREALEGANTNT-AVLTTMKNAADALKAAHKHM 89 (191)
Q Consensus 53 ~~Le~~~~~ie~a~~~~-~v~~alk~g~~aLk~~~~~~ 89 (191)
..|+.++..|++..... +.+..|+.|.+.++..++.+
T Consensus 2 ~~LEeIV~~LE~gel~Leesl~lyeeG~~L~k~C~~~L 39 (69)
T PRK14070 2 KELEEIVNRLENEDLPLEESIKLFERGVELYRKCKEIL 39 (69)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888877664 56889999999998887766
No 92
>PRK14160 heat shock protein GrpE; Provisional
Probab=24.26 E-value=4.2e+02 Score=22.02 Aligned_cols=10 Identities=10% Similarity=0.109 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy12999 5 KQEFLEKKIG 14 (191)
Q Consensus 5 r~~~le~~I~ 14 (191)
.+..|+.++.
T Consensus 62 e~~~l~~~l~ 71 (211)
T PRK14160 62 ENNKLKEENK 71 (211)
T ss_pred HHHHHHHHHH
Confidence 3333444433
No 93
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=24.05 E-value=4.5e+02 Score=22.30 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12999 39 KRYEKQLQQIDGTLSTIEMQREALEGAN 66 (191)
Q Consensus 39 K~~e~ql~k~~~~l~~Le~~~~~ie~a~ 66 (191)
.-++.+..+...-+..+...+...+...
T Consensus 55 e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 55 EDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 94
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.78 E-value=2.9e+02 Score=19.98 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy12999 34 ALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLT 73 (191)
Q Consensus 34 ~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~ 73 (191)
+......|..++..+...+.++...+..++.+......+.
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 4 LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677888888888888888888877777766654443
No 95
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.39 E-value=2.6e+02 Score=19.39 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhcCC
Q psy12999 48 IDGTLSTIEMQREALEGANTNT-AVLTTMKNAADALKAAHKHM 89 (191)
Q Consensus 48 ~~~~l~~Le~~~~~ie~a~~~~-~v~~alk~g~~aLk~~~~~~ 89 (191)
+...+..|+.++..+++-.... +.+..|+.|.+.++..++.+
T Consensus 12 fEea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~~~L 54 (80)
T PRK00977 12 FEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKL 54 (80)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888776664 56788888888888776554
No 96
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=22.87 E-value=5.6e+02 Score=22.98 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhch
Q psy12999 6 QEFLEKKIGEEINIARTNGT 25 (191)
Q Consensus 6 ~~~le~~I~~~~~~ak~~~~ 25 (191)
...+...|......++.++.
T Consensus 225 m~~~~~~I~~~~~~~~~~L~ 244 (359)
T PF10498_consen 225 MKQHKKSIESALPETKSQLD 244 (359)
T ss_pred HHHHHHHHHHhhhHHHHHHH
Confidence 44555666666666666654
No 97
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=22.27 E-value=3.3e+02 Score=25.20 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=16.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHh
Q psy12999 1 MLIKKQEFLEKKIGEEINIARTN 23 (191)
Q Consensus 1 ~L~kr~~~le~~I~~~~~~ak~~ 23 (191)
|+++|+..|+.+|..........
T Consensus 167 L~~~Rl~~L~~qi~~~~~~l~~~ 189 (475)
T PF10359_consen 167 LIQERLDELEEQIEKHEEKLGEL 189 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Confidence 46788888888888776666653
No 98
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=22.19 E-value=4.9e+02 Score=22.13 Aligned_cols=90 Identities=9% Similarity=0.203 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q psy12999 28 KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLT-TMKN-AADALKAAHKHMDVNQVHDMMDDIAEQQ 105 (191)
Q Consensus 28 k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~-alk~-g~~aLk~~~~~~~id~Ve~~mde~~e~~ 105 (191)
++.+..++++-..+-+.+.++......|...+..+.+.+.+...++ .+.. |-.+++...+.-++.++.+.+..|....
T Consensus 49 ~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~ 128 (291)
T PF10475_consen 49 KKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQ 128 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555555555555555444433 2122 4444444444445556666666666666
Q ss_pred HHHHHHHHHhcC
Q psy12999 106 DVAKEISEAISN 117 (191)
Q Consensus 106 e~~~Ei~e~L~~ 117 (191)
.....|+.+|+.
T Consensus 129 ~~~~~l~~ll~~ 140 (291)
T PF10475_consen 129 QTQSRLQELLEE 140 (291)
T ss_pred HHHHHHHHHHhc
Confidence 666666666654
No 99
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=22.02 E-value=1.3e+02 Score=21.45 Aligned_cols=70 Identities=21% Similarity=0.291 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCCCCCCHHHHHH
Q psy12999 55 IEMQREALEGANTNTAVLTTMKNAADALKAAHKHM-DVNQVHDMMDDIAEQQDV-AKEISEAISNPVAFGHDVDEDELEK 132 (191)
Q Consensus 55 Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~-~id~Ve~~mde~~e~~e~-~~Ei~e~L~~~~~~~~~~DedeLe~ 132 (191)
.......|+.++.+..++..| |.....+= ..++- +++.++-..... ..-|..+++.. .|++ +..
T Consensus 6 ~~k~~~~l~~v~~~~~lL~em------L~~~~~~~~~~~~~-el~~eL~~~ck~~r~~i~~li~~~------~dee-~l~ 71 (100)
T PF03127_consen 6 VSKRRSELEKVKNNAKLLNEM------LDNYDPGEESSSDN-ELIQELYESCKSMRPRIQRLIEEV------EDEE-LLG 71 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHTTTTTSTHHHH-HHHHHHHHHHHHHHHHHHHHHHTS------TTCH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHhcCCCCCCccch-HHHHHHHHHHHHHHHHHHHHHhhc------CcHH-HHH
Confidence 344556677777777666665 44443322 22222 466666555444 44577777542 2333 666
Q ss_pred HHHHHH
Q psy12999 133 ELEALE 138 (191)
Q Consensus 133 EL~~L~ 138 (191)
+|=.+-
T Consensus 72 ~lL~~N 77 (100)
T PF03127_consen 72 ELLQAN 77 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 664333
No 100
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.69 E-value=3.3e+02 Score=19.96 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=26.7
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12999 28 KRAAIQAL-KRKKRYEKQLQQIDGTLSTIEMQREALEG 64 (191)
Q Consensus 28 k~~A~~~L-k~KK~~e~ql~k~~~~l~~Le~~~~~ie~ 64 (191)
...|..++ |+.+.++++++++...+..+...+..+..
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~ 122 (129)
T cd00584 85 LEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEA 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888 55577788888888888888777655543
No 101
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=21.58 E-value=1.4e+02 Score=23.26 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy12999 35 LKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMK 76 (191)
Q Consensus 35 Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk 76 (191)
.....+|..+++-+..++..|...+..+.++..+...+++..
T Consensus 12 ~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~ 53 (145)
T COG1730 12 AAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAG 53 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345567788888888888888888888877777665555554
No 102
>PRK06798 fliD flagellar capping protein; Validated
Probab=20.60 E-value=4.2e+02 Score=24.30 Aligned_cols=10 Identities=30% Similarity=0.384 Sum_probs=4.4
Q ss_pred HHHHHHhcCC
Q psy12999 80 DALKAAHKHM 89 (191)
Q Consensus 80 ~aLk~~~~~~ 89 (191)
..|..++.++
T Consensus 428 s~l~~~~~~~ 437 (440)
T PRK06798 428 KTIKAMTKQK 437 (440)
T ss_pred HHHHHHhccc
Confidence 3444444443
No 103
>PRK10547 chemotaxis protein CheA; Provisional
Probab=20.46 E-value=6e+02 Score=24.83 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q psy12999 40 RYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQV 94 (191)
Q Consensus 40 ~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~V 94 (191)
++.-.++.....+..++..+..+|..-.+.+.++.+=-+...+|-.-.-+.++.+
T Consensus 6 ~l~~F~~Ea~E~l~~le~~Ll~LE~~p~d~e~in~lFRa~HTiKG~a~~~g~~~i 60 (670)
T PRK10547 6 FYQTFFDEADELLADMEQHLLVLDPEAPDAEQLNAIFRAAHSIKGGAGTFGFTVL 60 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhhHHhhcCchHH
Confidence 3445567777888888888888888777888888887777777776666665543
No 104
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=20.33 E-value=5.8e+02 Score=22.24 Aligned_cols=103 Identities=21% Similarity=0.190 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHhc---hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy12999 5 KQEFLEKKIGEEINIARTNG---TKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADA 81 (191)
Q Consensus 5 r~~~le~~I~~~~~~ak~~~---~k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~a 81 (191)
++..|-++........|..- ..++..+..+.+.+..+...+.+.......|+.+---+.. .|..+.+-...-...
T Consensus 23 K~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk--~Nk~lkeE~~~~~~e 100 (309)
T PF09728_consen 23 KLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQK--QNKKLKEESKRRARE 100 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 34444444444444333322 2234456666677777777888888888888887544433 334444443333333
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q psy12999 82 LKAAHKHMDVNQVHDMMDDIAEQQDVAKE 110 (191)
Q Consensus 82 Lk~~~~~~~id~Ve~~mde~~e~~e~~~E 110 (191)
-..-...+ .+++...+.+|+..++..+.
T Consensus 101 ee~kR~el-~~kFq~~L~dIq~~~ee~~~ 128 (309)
T PF09728_consen 101 EEEKRKEL-SEKFQATLKDIQAQMEEQSE 128 (309)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhccc
Confidence 33333333 35555556655555554443
No 105
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=20.02 E-value=2.8e+02 Score=18.47 Aligned_cols=42 Identities=29% Similarity=0.288 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhch-hcHHHHHHHHHHHHHHHHHHHHH
Q psy12999 7 EFLEKKIGEEINIARTNGT-KNKRAAIQALKRKKRYEKQLQQI 48 (191)
Q Consensus 7 ~~le~~I~~~~~~ak~~~~-k~k~~A~~~Lk~KK~~e~ql~k~ 48 (191)
..+..++..+......+.. ++-..|..++++-+++.+-++.+
T Consensus 34 ~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~kLky~~kl~~~i 76 (78)
T PF07743_consen 34 KEIEERIKELIKELAEAFDAKDWEEAKEALRKLKYLQKLLEEI 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555543 44567888888888877655543
Done!