Query psy12999
Match_columns 191
No_of_seqs 150 out of 831
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 16:31:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3um3_B Charged multivesicular 99.9 9.5E-25 3.3E-29 160.2 12.1 101 87-191 1-102 (104)
2 2gd5_A Charged multivesicular 99.7 1.5E-18 5.2E-23 138.8 2.9 122 28-161 57-178 (179)
3 3frt_A Charged multivesicular 99.6 9.4E-16 3.2E-20 126.0 5.6 141 17-166 41-186 (218)
4 4abm_A Charged multivesicular 99.6 1.2E-14 4E-19 101.7 8.4 63 1-63 17-79 (79)
5 2luh_B Vacuolar protein-sortin 99.1 1.6E-11 5.5E-16 80.2 1.1 54 89-142 1-56 (59)
6 2lxm_B Charged multivesicular 98.5 6.9E-09 2.4E-13 67.5 -0.8 37 105-142 1-37 (57)
7 3uly_B Charged multivesicular 96.7 0.0022 7.4E-08 43.0 4.5 43 118-161 2-44 (69)
8 3frt_A Charged multivesicular 94.7 0.018 6.1E-07 46.9 3.0 17 127-143 154-170 (218)
9 2gd5_A Charged multivesicular 90.7 0.12 4.3E-06 40.3 2.5 84 41-128 59-147 (179)
10 1oxz_A ADP-ribosylation factor 65.5 12 0.00042 29.3 5.7 71 55-138 71-144 (186)
11 1naf_A ADP-ribosylation factor 61.1 8.9 0.0003 29.3 4.0 37 96-138 91-128 (158)
12 1wrd_A TOM1, target of MYB pro 53.9 13 0.00044 26.2 3.6 70 55-137 8-78 (103)
13 3eab_G CHMP1B; spastin, MIT, E 48.8 1.1 3.7E-05 27.9 -2.5 25 135-162 3-27 (50)
14 4ani_A Protein GRPE; chaperone 47.2 29 0.00098 27.7 5.1 6 9-14 64-69 (213)
15 2dfs_A Myosin-5A; myosin-V, in 45.0 2.3E+02 0.008 27.7 14.0 10 5-14 929-938 (1080)
16 3ghg_A Fibrinogen alpha chain; 39.9 69 0.0024 29.1 6.8 33 1-34 54-86 (562)
17 2pnv_A Small conductance calci 39.5 29 0.001 20.7 3.0 17 2-18 21-37 (43)
18 1fxk_C Protein (prefoldin); ar 34.4 1E+02 0.0035 21.9 6.1 36 28-63 86-122 (133)
19 3gn4_A Myosin-VI; unconvention 29.0 1.8E+02 0.0062 21.8 10.6 16 125-140 121-136 (148)
20 2lch_A Protein OR38; structura 28.8 1.4E+02 0.0048 20.4 7.8 65 40-104 7-71 (113)
21 3kyj_A CHEA3, putative histidi 27.8 1.8E+02 0.006 21.2 9.3 68 40-107 12-79 (144)
22 3um3_B Charged multivesicular 27.7 1.6E+02 0.0054 20.6 7.3 10 177-186 91-100 (104)
23 2inr_A DNA topoisomerase 4 sub 26.6 3.4E+02 0.012 24.4 9.1 84 51-139 405-496 (514)
24 2zdi_C Prefoldin subunit alpha 25.3 1.4E+02 0.0049 21.7 5.5 35 28-62 96-131 (151)
25 1o3x_A ADP-ribosylation factor 25.1 1.3E+02 0.0044 22.2 5.2 75 51-138 42-119 (140)
26 2kjg_A Archaeal protein SSO690 24.0 70 0.0024 22.1 3.2 61 82-144 12-72 (99)
27 1i5n_A Chemotaxis protein CHEA 23.5 2.1E+02 0.0072 20.6 6.5 19 45-63 13-31 (146)
28 1deq_A Fibrinogen (alpha chain 23.1 3.7E+02 0.013 23.3 9.6 23 93-115 135-157 (390)
29 3m91_B Prokaryotic ubiquitin-l 23.0 73 0.0025 19.0 2.7 19 90-108 12-30 (44)
30 2lp4_A Chemotaxis protein CHEA 23.0 2E+02 0.0069 22.3 6.4 40 45-84 13-52 (225)
31 2lw1_A ABC transporter ATP-bin 21.1 1.9E+02 0.0065 19.2 8.6 55 3-57 28-84 (89)
32 2ld6_A Chemotaxis protein CHEA 21.0 2.3E+02 0.0079 20.2 8.2 66 41-106 6-71 (139)
33 2inr_A DNA topoisomerase 4 sub 20.7 4.6E+02 0.016 23.5 9.3 29 112-140 441-469 (514)
No 1
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=99.92 E-value=9.5e-25 Score=160.23 Aligned_cols=101 Identities=53% Similarity=0.878 Sum_probs=89.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCC-CCCCCCCCCCCCC
Q psy12999 87 KHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTP-GGELPEIPSTAPK 165 (191)
Q Consensus 87 ~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~-~~~lP~vP~~~lp 165 (191)
++|++|+|+++||++++++++++||+++|+++++++..+|++||++||++|+++.+++.++.++++ ...||+||++++|
T Consensus 1 ~~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~~~lp 80 (104)
T 3um3_B 1 DNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSIALP 80 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCcCC
Confidence 468999999999999999999999999999998777789999999999999999999988887654 3579999999999
Q ss_pred CCccchhcccccchHHHHHHHHhhhC
Q psy12999 166 DKPKEKASTKERSVEDEIRELEAWAS 191 (191)
Q Consensus 166 ~~~~~~~~~~~~~e~~el~~l~a~~~ 191 (191)
+.|+++ ...+|+++++|++||+
T Consensus 81 ~~p~~~----~~~edde~~~L~~wa~ 102 (104)
T 3um3_B 81 SKPAKK----KEEEDDDMKELENWAG 102 (104)
T ss_pred CCcccC----CccchHHHHHHHHHHh
Confidence 887632 3457889999999995
No 2
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=99.71 E-value=1.5e-18 Score=138.79 Aligned_cols=122 Identities=16% Similarity=0.218 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q psy12999 28 KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDV 107 (191)
Q Consensus 28 k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~ 107 (191)
|..|+.++|.||+ ..++..+..+|+++.+.++++.++..|+.+|+.++++|+.+|+.|++++|..+|++|.+++++
T Consensus 57 ki~Ak~lvr~rk~----~~~l~~~~a~l~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~ 132 (179)
T 2gd5_A 57 IVLAKEMIRSRKA----VSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMK 132 (179)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 5589999999986 668888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCCCCCCCCCCC
Q psy12999 108 AKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPS 161 (191)
Q Consensus 108 ~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~~~~lP~vP~ 161 (191)
+++|+++|+++++ +..|+++.++|.+++.+.++++... ..||.+|+
T Consensus 133 ~~~~~E~m~d~~~--~~~~~~~~eee~d~~v~kVl~E~~~------~~l~~~P~ 178 (179)
T 2gd5_A 133 AGIIEEMLEDTFE--SMDDQEEMEEEAEMEIDRILFEITA------GALGKAPS 178 (179)
T ss_dssp HTSCC---------------------CTTHHHHTTCCC----------------
T ss_pred HHHHHHHHHHHHh--hcccCCCcHHHHHHHHHHHHHHhhH------hhcccCCC
Confidence 9999999999875 3345566777888888887775321 24777775
No 3
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=99.59 E-value=9.4e-16 Score=126.05 Aligned_cols=141 Identities=13% Similarity=0.173 Sum_probs=86.3
Q ss_pred HHHHHHhchh-c----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCH
Q psy12999 17 INIARTNGTK-N----KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDV 91 (191)
Q Consensus 17 ~~~ak~~~~k-~----k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~i 91 (191)
...+|+++++ + |..|+.+.|.||. ..+++.+..+|.++.+.+.++.++..|..+|+.++++|+.+|+.|++
T Consensus 41 ~~~IKkaakkg~~~~arilAkelVR~Rk~----~~rl~~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~M~~~n~~m~l 116 (218)
T 3frt_A 41 KRSVKDAAKKGQKDVCIVLAKEMIRSRKA----VSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKI 116 (218)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHSTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 3444555443 3 5577777777766 66999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCCCCCCCCCCCCCCCC
Q psy12999 92 NQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAPKD 166 (191)
Q Consensus 92 d~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~~~~lP~vP~~~lp~ 166 (191)
.+|..+|++|..++++++-+++++...++ +..|+++.++|-+.+.+.++++.+. +.....|++|+.++|.
T Consensus 117 ~~i~~tM~efekE~~k~~i~eEmm~Da~d--~~~~~~~~eee~d~~v~kVldEi~~---~~l~~~p~~~~~~~~~ 186 (218)
T 3frt_A 117 PEIQATMRELSKEMMKAGIIEEMLEDTFE--SMDDQEEMEEEAEMEIDRILFEITA---GALGKAPSKVTDALPE 186 (218)
T ss_dssp HHHHHHHHHHHHHHHHHSCC------------------CTTSTTTHHHHHHHTC---------------------
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHh--cccccCCchHHHHHHHHHHHHHHhH---hHhhcCCCCCCCCCCC
Confidence 99999999999999999999999998764 2334455566777777777775321 1223456666556664
No 4
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=101.68 Aligned_cols=63 Identities=81% Similarity=1.046 Sum_probs=60.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12999 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALE 63 (191)
Q Consensus 1 ~L~kr~~~le~~I~~~~~~ak~~~~k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie 63 (191)
||++++.+|+.+|+.+...||+++.+||.+|+.|||+||+||++|+++.++++||++++++||
T Consensus 17 ~L~kkq~~L~~~i~~e~~~Ak~~~~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~iE 79 (79)
T 4abm_A 17 MLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALE 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999999999999999999999999999999998875
No 5
>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}
Probab=99.09 E-value=1.6e-11 Score=80.23 Aligned_cols=54 Identities=28% Similarity=0.579 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCCHHHHHHHHHHHHHHHh
Q psy12999 89 MDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFG--HDVDEDELEKELEALEQEEL 142 (191)
Q Consensus 89 ~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~--~~~DedeLe~EL~~L~~e~l 142 (191)
|+|++|++++|+|.+.++.++||+++|+++++++ +++|+++|++||++|..+.+
T Consensus 1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de~~ 56 (59)
T 2luh_B 1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQEDF 56 (59)
T ss_dssp CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcccc
Confidence 5799999999999999999999999999998775 37999999999999998765
No 6
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=98.53 E-value=6.9e-09 Score=67.46 Aligned_cols=37 Identities=46% Similarity=0.602 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHh
Q psy12999 105 QDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEEL 142 (191)
Q Consensus 105 ~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l 142 (191)
++..+||+++|+++++++ ++||+||++||++|+++..
T Consensus 1 ~e~a~EIqealsr~~g~~-diDEdEL~aELe~LeqE~~ 37 (57)
T 2lxm_B 1 MEDANEINEALSRSYGTP-ELDEDDLEAELDALGDELL 37 (57)
T ss_dssp ---------------CCC-CCCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHcCCCCCC-CCCHHHHHHHHHHHHHHHh
Confidence 467899999999998875 8999999999999998864
No 7
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B
Probab=96.70 E-value=0.0022 Score=43.01 Aligned_cols=43 Identities=33% Similarity=0.456 Sum_probs=26.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhhHhhhccCCCCCCCCCCCC
Q psy12999 118 PVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPS 161 (191)
Q Consensus 118 ~~~~~~~~DedeLe~EL~~L~~e~l~~~~~~~~~~~~~lP~vP~ 161 (191)
+++++ ++||++|++||++|..+..-+..+.--.+...+|.+|.
T Consensus 2 sy~~p-diDE~eL~aELdaL~~e~~~~~~pSyL~~~~~~P~~p~ 44 (69)
T 3uly_B 2 SYGTP-ELDEDDLEAELDALGDELLADEDSSYLDEAASAPAIPE 44 (69)
T ss_pred CCCCC-CCCHHHHHHHHHHHHHHHhcccCcchhhccccCCCCCC
Confidence 44554 79999999999999977532211000012346777776
No 8
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=94.65 E-value=0.018 Score=46.89 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy12999 127 EDELEKELEALEQEELD 143 (191)
Q Consensus 127 edeLe~EL~~L~~e~l~ 143 (191)
+++.+++.+....+...
T Consensus 154 eee~d~~v~kVldEi~~ 170 (218)
T 3frt_A 154 EEEAEMEIDRILFEITA 170 (218)
T ss_dssp TTSTTTHHHHHHHTC--
T ss_pred hHHHHHHHHHHHHHHhH
Confidence 34444555554444433
No 9
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=90.74 E-value=0.12 Score=40.28 Aligned_cols=84 Identities=7% Similarity=0.109 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH--HHHHHHH---HHHHHHHHHh
Q psy12999 41 YEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMM--DDIAEQQ---DVAKEISEAI 115 (191)
Q Consensus 41 ~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~m--de~~e~~---e~~~Ei~e~L 115 (191)
|=+++-+...+..+|-....+|+........+.+.....++|+...+. +..+...| +.++..+ +..-+..+++
T Consensus 59 ~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~~~~v~~am~~~~~~--M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~ 136 (179)
T 2gd5_A 59 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGII 136 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCSHH--HHTTTSSTTSSSCCHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777778888888888888888777776665555555543332 34444444 3444333 3333444444
Q ss_pred cCCCCCCCCCCHH
Q psy12999 116 SNPVAFGHDVDED 128 (191)
Q Consensus 116 ~~~~~~~~~~Ded 128 (191)
+..++ +.+|+.
T Consensus 137 ~E~m~--d~~~~~ 147 (179)
T 2gd5_A 137 EEMLE--DTFESM 147 (179)
T ss_dssp C------------
T ss_pred HHHHH--HHHhhc
Confidence 55543 455543
No 10
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=65.50 E-value=12 Score=29.29 Aligned_cols=71 Identities=21% Similarity=0.304 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcC-CCHH-HHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCCCCCHHHHH
Q psy12999 55 IEMQREALEGANTNTAVLTTMKNAADALKAAHKH-MDVN-QVHDMMDDIAEQQDVAKE-ISEAISNPVAFGHDVDEDELE 131 (191)
Q Consensus 55 Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~-~~id-~Ve~~mde~~e~~e~~~E-i~e~L~~~~~~~~~~DedeLe 131 (191)
+......|+..+.++.++.-| |..++.+ -+.. + .+++.++-.....+.- |..+++.. .|++++.
T Consensus 71 ~~k~~~eLe~V~~nv~LL~EM------L~~~~pg~~~~~~d-~Ell~eL~~~Ck~~qp~i~~Li~e~------~ddee~L 137 (186)
T 1oxz_A 71 ISKRVNAIEEVNNNVKLLTEM------VMSHSQGGAAAGSS-EDLMKELYQRCERMRPTLFRLASDT------EDNDEAL 137 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHTSSSCSCTTTT-HHHHHHHHHHHHHHHHHHHHHHHHC------CSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHhcCCCccCcccc-HHHHHHHHHHHHHHHHHHHHHHHHc------cCCHHHH
Confidence 334444455555555555544 3333321 1111 1 3677888777766554 77777642 3556666
Q ss_pred HHHHHHH
Q psy12999 132 KELEALE 138 (191)
Q Consensus 132 ~EL~~L~ 138 (191)
.|+=.+-
T Consensus 138 ~elL~~N 144 (186)
T 1oxz_A 138 AEILQAN 144 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 6664443
No 11
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=61.13 E-value=8.9 Score=29.33 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHhcCCCCCCCCCCHHHHHHHHHHHH
Q psy12999 96 DMMDDIAEQQDVAKE-ISEAISNPVAFGHDVDEDELEKELEALE 138 (191)
Q Consensus 96 ~~mde~~e~~e~~~E-i~e~L~~~~~~~~~~DedeLe~EL~~L~ 138 (191)
+++.++-.....+.- |..+++.. .|++++..|+=.+-
T Consensus 91 Ell~eL~~~Ck~~qp~i~~Li~e~------~ddee~L~elL~~N 128 (158)
T 1naf_A 91 DLMKELYQRCERMRPTLFRLASDT------EDNDEALAEILQAN 128 (158)
T ss_dssp THHHHHHHHHHTHHHHHHHHHHHC------CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc------cCCHHHHHHHHHhh
Confidence 677777777765554 67777642 35566666664443
No 12
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=53.94 E-value=13 Score=26.21 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCCCCCHHHHHHH
Q psy12999 55 IEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKE-ISEAISNPVAFGHDVDEDELEKE 133 (191)
Q Consensus 55 Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~~~E-i~e~L~~~~~~~~~~DedeLe~E 133 (191)
+......|+.++.+..++.-| |...+.+=....-++++.++-+....+.- |..+++. .|++++..+
T Consensus 8 ~~k~~~el~~v~~n~~lL~EM------L~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~-------~~dee~l~~ 74 (103)
T 1wrd_A 8 IGKLRSELEMVSGNVRVMSEM------LTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQ-------IANEQLTEE 74 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhc-------cCCHHHHHH
Confidence 344555666666666666655 44333221111223677777776655554 6677752 245556666
Q ss_pred HHHH
Q psy12999 134 LEAL 137 (191)
Q Consensus 134 L~~L 137 (191)
+=.+
T Consensus 75 lL~~ 78 (103)
T 1wrd_A 75 LLIV 78 (103)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5333
No 13
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=48.78 E-value=1.1 Score=27.90 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=11.3
Q ss_pred HHHHHHHhhHhhhccCCCCCCCCCCCCC
Q psy12999 135 EALEQEELDKDLLKLSTPGGELPEIPST 162 (191)
Q Consensus 135 ~~L~~e~l~~~~~~~~~~~~~lP~vP~~ 162 (191)
+.|..++.++..+++. ..||..|.+
T Consensus 3 d~Lm~qVaDE~Glel~---~~L~~~~~~ 27 (50)
T 3eab_G 3 DMLLQEMADEAGLDLN---MELPQGQTG 27 (50)
T ss_dssp CHHHHHHHHHTTCC------------CH
T ss_pred HHHHHHHHHHhCchHH---hhccccccc
Confidence 3577888888776665 357777653
No 14
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=47.20 E-value=29 Score=27.74 Aligned_cols=6 Identities=17% Similarity=0.313 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy12999 9 LEKKIG 14 (191)
Q Consensus 9 le~~I~ 14 (191)
+..+|.
T Consensus 64 l~~~l~ 69 (213)
T 4ani_A 64 AKAQIA 69 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333343
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.01 E-value=2.3e+02 Score=27.73 Aligned_cols=10 Identities=40% Similarity=0.415 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q psy12999 5 KQEFLEKKIG 14 (191)
Q Consensus 5 r~~~le~~I~ 14 (191)
++..|+.+++
T Consensus 929 kl~eLq~rL~ 938 (1080)
T 2dfs_A 929 KIMQLQRKID 938 (1080)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 16
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=39.87 E-value=69 Score=29.12 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=20.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhchhcHHHHHHH
Q psy12999 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQA 34 (191)
Q Consensus 1 ~L~kr~~~le~~I~~~~~~ak~~~~k~k~~A~~~ 34 (191)
+|.|....+.++|+.....+-++ .+++.-+=.+
T Consensus 54 lLdkqErDltkrINELKnqLEdl-sKnsKdseqy 86 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEY-QKNNKDSHSL 86 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHH
T ss_pred hHHhhcCcHHHHHHHHHHHHHHH-HhhchhHHHH
Confidence 36677777888888777766666 4443333333
No 17
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=39.49 E-value=29 Score=20.65 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy12999 2 LIKKQEFLEKKIGEEIN 18 (191)
Q Consensus 2 L~kr~~~le~~I~~~~~ 18 (191)
|++|+..|+.|++....
T Consensus 21 LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 21 FEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46666666666665544
No 18
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=34.42 E-value=1e+02 Score=21.86 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=25.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12999 28 KRAAIQALKR-KKRYEKQLQQIDGTLSTIEMQREALE 63 (191)
Q Consensus 28 k~~A~~~Lk~-KK~~e~ql~k~~~~l~~Le~~~~~ie 63 (191)
...|..+|.+ .+.++.+++++...+..+...+..+.
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~ 122 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888854 46678888888887777777654443
No 19
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=29.03 E-value=1.8e+02 Score=21.75 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHHHH
Q psy12999 125 VDEDELEKELEALEQE 140 (191)
Q Consensus 125 ~DedeLe~EL~~L~~e 140 (191)
++..+++.+++.|...
T Consensus 121 i~~~~Id~~y~~lv~~ 136 (148)
T 3gn4_A 121 MTREQIQKEYDALVKS 136 (148)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4555666666666544
No 20
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=28.82 E-value=1.4e+02 Score=20.37 Aligned_cols=65 Identities=9% Similarity=0.171 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q psy12999 40 RYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQ 104 (191)
Q Consensus 40 ~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~ 104 (191)
+++.-++.....+..|+..+..++....+...++++..+...||-.-..+++..|..+--.+.+.
T Consensus 7 l~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~ 71 (113)
T 2lch_A 7 YIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNL 71 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHH
Confidence 34445667777888888888888877777777777877777888776667777777766555443
No 21
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=27.79 E-value=1.8e+02 Score=21.20 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q psy12999 40 RYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDV 107 (191)
Q Consensus 40 ~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~ 107 (191)
+++-.++.....+..|+..+..++..-.+...++++-.+.-.||-.-.-+++..|.++--.+.+....
T Consensus 12 ll~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~ 79 (144)
T 3kyj_A 12 IWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGL 79 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHH
Confidence 34455667777888888888888877777888888888888888766667777777666666554443
No 22
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=27.69 E-value=1.6e+02 Score=20.64 Aligned_cols=10 Identities=10% Similarity=0.096 Sum_probs=6.2
Q ss_pred cchHHHHHHH
Q psy12999 177 RSVEDEIREL 186 (191)
Q Consensus 177 ~~e~~el~~l 186 (191)
+++..+|++-
T Consensus 91 dde~~~L~~w 100 (104)
T 3um3_B 91 DDDMKELENW 100 (104)
T ss_pred hHHHHHHHHH
Confidence 4567777654
No 23
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=26.61 E-value=3.4e+02 Score=24.41 Aligned_cols=84 Identities=12% Similarity=0.183 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy12999 51 TLSTIEMQREALEGANTNTAVLTTMKN--------AADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFG 122 (191)
Q Consensus 51 ~l~~Le~~~~~ie~a~~~~~v~~alk~--------g~~aLk~~~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~ 122 (191)
.+.++..++.-|.++.....+...|.. +...|..-...++-.+++++..+..+......+...+|+..-.
T Consensus 405 a~~~id~vI~iIr~s~~~~~a~~~L~~~f~lse~qa~~IL~m~L~rLT~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~-- 482 (514)
T 2inr_A 405 ALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDA-- 482 (514)
T ss_dssp HHHSHHHHHHHHHHCCSHHHHHHHHHTTSSCCHHHHHHHHTCCGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHH--
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHhchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHH--
Confidence 345566666555555544444444432 2223332224555667788888888888888888888865310
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy12999 123 HDVDEDELEKELEALEQ 139 (191)
Q Consensus 123 ~~~DedeLe~EL~~L~~ 139 (191)
=-+-+-+||.++..
T Consensus 483 ---~~~~i~~el~~i~~ 496 (514)
T 2inr_A 483 ---LLNVIKEELNEIKK 496 (514)
T ss_dssp ---HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHH
Confidence 01335566665553
No 24
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=25.25 E-value=1.4e+02 Score=21.73 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=24.7
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12999 28 KRAAIQALKRK-KRYEKQLQQIDGTLSTIEMQREAL 62 (191)
Q Consensus 28 k~~A~~~Lk~K-K~~e~ql~k~~~~l~~Le~~~~~i 62 (191)
...|..+|.+| +.++.++.++...+..+...+..+
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~ 131 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEV 131 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888888554 666777888877777777665443
No 25
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=25.09 E-value=1.3e+02 Score=22.19 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCC-CHH-HHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCCCCCH
Q psy12999 51 TLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHM-DVN-QVHDMMDDIAEQQDVAKE-ISEAISNPVAFGHDVDE 127 (191)
Q Consensus 51 ~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~-~id-~Ve~~mde~~e~~e~~~E-i~e~L~~~~~~~~~~De 127 (191)
....+......|+.++.++.++.-| |.....+= ..+ + .+++.++-.....+.- |..+++.. .|+
T Consensus 42 r~e~~~k~~~eLe~v~~n~~LL~EM------L~~~~p~~~~~~~d-~Ell~eL~~~ck~~qp~i~~li~e~------~dd 108 (140)
T 1o3x_A 42 RMEKISKRVNAIEEVNNNVKLLTEM------VMSHSQGGAAAGSS-EDLMKELYQRCERMRPTLFRLASDT------EDN 108 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHTTTTSCCCHHH-HHHHHHHHHHHHHHHHHHHHHHTTC------TTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH------HHhcCCCCCCcccc-HHHHHHHHHHHHHHHHHHHHHHHHc------cCC
Confidence 3666777777788888887777777 55554322 211 2 3688888877766654 77777652 355
Q ss_pred HHHHHHHHHHH
Q psy12999 128 DELEKELEALE 138 (191)
Q Consensus 128 deLe~EL~~L~ 138 (191)
+++..|+=.+-
T Consensus 109 ee~l~elL~~N 119 (140)
T 1o3x_A 109 DEALAEILQAN 119 (140)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 66666664443
No 26
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=23.97 E-value=70 Score=22.13 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=40.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhH
Q psy12999 82 LKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDK 144 (191)
Q Consensus 82 Lk~~~~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e~l~~ 144 (191)
|++.-+.++.+.|+.+++++....-+++-|-..+--.+. ..+|+--=-.++=.|....+.+
T Consensus 12 LrkfKgkvd~~~v~~IL~eiE~~~rksnni~tS~If~Ya--nh~~~V~knk~fy~li~~Ilek 72 (99)
T 2kjg_A 12 LRQFKGKVNFNLVMQILDEIELDLRGSDNIKTSIIYVYS--SHLDEIRKNKEFYDMIAEILQR 72 (99)
T ss_dssp HHHHTCCSCHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH--HTHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHhcCCchhhHHHHHHH--HHHHHHHhhHHHHHHHHHHHHH
Confidence 677778999999999999999998887766655432221 2233333345666666666554
No 27
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=23.55 E-value=2.1e+02 Score=20.63 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12999 45 LQQIDGTLSTIEMQREALE 63 (191)
Q Consensus 45 l~k~~~~l~~Le~~~~~ie 63 (191)
++.....+..|+..+..++
T Consensus 13 l~Ea~e~L~~le~~L~~le 31 (146)
T 1i5n_A 13 FDEADELLADMEQHLLDLV 31 (146)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 28
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.10 E-value=3.7e+02 Score=23.29 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy12999 93 QVHDMMDDIAEQQDVAKEISEAI 115 (191)
Q Consensus 93 ~Ve~~mde~~e~~e~~~Ei~e~L 115 (191)
.|.-|-..|+++..++..+.-.|
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666666665555554
No 29
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=23.00 E-value=73 Score=18.98 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy12999 90 DVNQVHDMMDDIAEQQDVA 108 (191)
Q Consensus 90 ~id~Ve~~mde~~e~~e~~ 108 (191)
..+++++++|+|.+.++..
T Consensus 12 ~~~~~D~lLDeId~vLE~N 30 (44)
T 3m91_B 12 LTEETDDLLDEIDDVLEEN 30 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 4578888888888777654
No 30
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=23.00 E-value=2e+02 Score=22.29 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy12999 45 LQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKA 84 (191)
Q Consensus 45 l~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~ 84 (191)
++.....+.+|+..+..++..-.+.+.++++-.+...||-
T Consensus 13 ~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG 52 (225)
T 2lp4_A 13 FDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKG 52 (225)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh
Confidence 3444444455555555544444444444444433333333
No 31
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=21.09 E-value=1.9e+02 Score=19.19 Aligned_cols=55 Identities=16% Similarity=0.055 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHh--chhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12999 3 IKKQEFLEKKIGEEINIARTN--GTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEM 57 (191)
Q Consensus 3 ~kr~~~le~~I~~~~~~ak~~--~~k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~ 57 (191)
..+|..|+.+|.......-.. ...+......++.+...++..|+.+..-=..|+.
T Consensus 28 e~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 28 PQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544444331 1334445566777777777777777655444443
No 32
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=21.05 E-value=2.3e+02 Score=20.17 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q psy12999 41 YEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQD 106 (191)
Q Consensus 41 ~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e 106 (191)
++..++.....+..|+..+..++....+...++++..+.-.||-.-..+++..|-.+--.+.+..+
T Consensus 6 l~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~ 71 (139)
T 2ld6_A 6 LGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILD 71 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHH
Confidence 344566677777888888887877666677777777777888877778888888777666655443
No 33
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=20.66 E-value=4.6e+02 Score=23.51 Aligned_cols=29 Identities=21% Similarity=0.059 Sum_probs=17.3
Q ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHH
Q psy12999 112 SEAISNPVAFGHDVDEDELEKELEALEQE 140 (191)
Q Consensus 112 ~e~L~~~~~~~~~~DedeLe~EL~~L~~e 140 (191)
+.+|+-.+..-...+-+.|.+|+++|..+
T Consensus 441 ~~IL~m~L~rLT~~e~~kl~~E~~~l~~e 469 (514)
T 2inr_A 441 EAIVMLQLYRLTNTDIVALEGEHKELEAL 469 (514)
T ss_dssp HHHHTCCGGGGSTTHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHhhHHHHHHHHHHHHHHHH
Confidence 33555433211356678888888888764
Done!