Query psy12999
Match_columns 191
No_of_seqs 150 out of 831
Neff 6.8
Searched_HMMs 13730
Date Fri Aug 16 16:31:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12999.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12999hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ab4a_ e.11.1.1 (A:) DNA Gyra 61.6 29 0.0021 28.7 10.3 49 87-140 435-483 (493)
2 d1vp7a_ a.7.13.1 (A:) Exonucle 46.6 27 0.002 21.1 5.7 51 48-100 8-59 (68)
3 d1fpoa2 a.23.1.1 (A:77-171) HS 43.9 34 0.0025 21.6 6.6 43 8-50 44-87 (95)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 42.7 28 0.0021 23.1 5.9 36 28-63 86-122 (133)
5 d1i5na_ a.24.10.3 (A:) Chemota 41.8 38 0.0028 22.1 6.5 68 41-108 6-73 (128)
6 d1wrda1 a.7.8.1 (A:215-307) Ta 38.2 15 0.0011 23.6 3.5 56 55-117 3-60 (93)
7 d1tqga_ a.24.10.3 (A:) Chemota 35.0 48 0.0035 20.7 8.2 64 42-105 8-71 (105)
8 d256ba_ a.24.3.1 (A:) Cytochro 30.4 46 0.0034 21.5 5.2 37 72-108 4-40 (106)
9 d1dkza1 a.8.4.1 (A:507-603) Dn 28.7 64 0.0046 20.2 12.8 89 11-108 4-92 (97)
10 d1k4ta1 a.2.8.1 (A:641-712) Eu 24.9 72 0.0052 19.5 7.8 11 4-14 2-12 (72)
No 1
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=61.62 E-value=29 Score=28.74 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=33.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHH
Q psy12999 87 KHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQE 140 (191)
Q Consensus 87 ~~~~id~Ve~~mde~~e~~e~~~Ei~e~L~~~~~~~~~~DedeLe~EL~~L~~e 140 (191)
..++-.+++++..+.++......+...+|++.- .--+-+-+||.++...
T Consensus 435 ~~LT~le~~kL~~E~~~l~~ei~eL~~iL~s~~-----~l~~~i~~EL~~lk~k 483 (493)
T d1ab4a_ 435 QKLTGLEHEKLLDEYKELLDQIAELLRILGSAD-----RLMEVIREELELVREQ 483 (493)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHHHH
Confidence 345667889999999998888888888886531 1123455677666543
No 2
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=46.63 E-value=27 Score=21.14 Aligned_cols=51 Identities=12% Similarity=0.234 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy12999 48 IDGTLSTIEMQREALEGANTNT-AVLTTMKNAADALKAAHKHMDVNQVHDMMDD 100 (191)
Q Consensus 48 ~~~~l~~Le~~~~~ie~a~~~~-~v~~alk~g~~aLk~~~~~~~id~Ve~~mde 100 (191)
+...+..|+.++..+|+-.... +.+..|+.|.+..+..++.+ ++++.-+..
T Consensus 8 fEe~l~~LE~IV~~LE~g~l~Leesl~~ye~G~~L~~~C~~~L--~~ae~ki~~ 59 (68)
T d1vp7a_ 8 FETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRL--AQAEQQVKV 59 (68)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 4567788888998888877664 56889999999999887765 444433333
No 3
>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}
Probab=43.86 E-value=34 Score=21.60 Aligned_cols=43 Identities=9% Similarity=0.048 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhch-hcHHHHHHHHHHHHHHHHHHHHHHH
Q psy12999 8 FLEKKIGEEINIARTNGT-KNKRAAIQALKRKKRYEKQLQQIDG 50 (191)
Q Consensus 8 ~le~~I~~~~~~ak~~~~-k~k~~A~~~Lk~KK~~e~ql~k~~~ 50 (191)
.+..++..+....+.+.. ++=..|..++++-|.|.+.+..+..
T Consensus 44 ei~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLkF~~kl~~ei~~ 87 (95)
T d1fpoa2 44 RVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQ 87 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344445555555555443 4456888899888887766555443
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=42.73 E-value=28 Score=23.06 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=25.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12999 28 KRAAIQALK-RKKRYEKQLQQIDGTLSTIEMQREALE 63 (191)
Q Consensus 28 k~~A~~~Lk-~KK~~e~ql~k~~~~l~~Le~~~~~ie 63 (191)
...|..++. |.+.+++.++++...+..+...+..+.
T Consensus 86 ~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~ 122 (133)
T d1fxkc_ 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447888884 446678888888777777777654443
No 5
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=41.80 E-value=38 Score=22.07 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q psy12999 41 YEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVA 108 (191)
Q Consensus 41 ~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~~ 108 (191)
++-.++.....+.+++..+..++....+.+.++.+-.+...||-.-.-+++..|.++--.+.+.....
T Consensus 6 ~~~F~~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~~l 73 (128)
T d1i5na_ 6 YQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEA 73 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhHHhhcChHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777666667777777777777777666677777777777666554443
No 6
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.18 E-value=15 Score=23.59 Aligned_cols=56 Identities=18% Similarity=0.270 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHH-HHHHHhcC
Q psy12999 55 IEMQREALEGANTNTAVLTTMKNAADALKAAHKH-MDVNQVHDMMDDIAEQQDVAK-EISEAISN 117 (191)
Q Consensus 55 Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~-~~id~Ve~~mde~~e~~e~~~-Ei~e~L~~ 117 (191)
+......|+.++.|+.++.-| |..++.+ -++.+ .+++.++-.....+. -|...++.
T Consensus 3 ~~kl~~eLe~v~~n~~lL~eM------L~~~~p~~~~~~d-~eli~eL~~~C~~~q~~i~~li~~ 60 (93)
T d1wrda1 3 IGKLRSELEMVSGNVRVMSEM------LTELVPTQAEPAD-LELLQELNRTCRAMQQRVLELIPQ 60 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHSCTTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH------HHhcCCCCCCcch-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556677777777777666 5554432 23444 356666655554444 46677754
No 7
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=35.02 E-value=48 Score=20.74 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q psy12999 42 EKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQ 105 (191)
Q Consensus 42 e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~ 105 (191)
+--++.....+..++..+..++..-.+...++.+..+...||-.-.-++++.|..+.-.+.+..
T Consensus 8 ~~Fl~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l 71 (105)
T d1tqga_ 8 GVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENIL 71 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCchhhcCHHHHHHHHHHHHHHH
Confidence 4456677777888888888888776777778888877778887766677787777777666543
No 8
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=30.42 E-value=46 Score=21.55 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q psy12999 72 LTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVA 108 (191)
Q Consensus 72 ~~alk~g~~aLk~~~~~~~id~Ve~~mde~~e~~e~~ 108 (191)
-++|+.=+.+++.+.+--+++.|...|++|++.+...
T Consensus 4 ~~~M~~m~~a~k~~~~A~s~~Ei~~~m~~lr~a~~d~ 40 (106)
T d256ba_ 4 EDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDA 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666778899999999888877653
No 9
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Probab=28.68 E-value=64 Score=20.16 Aligned_cols=89 Identities=20% Similarity=0.199 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCC
Q psy12999 11 KKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMD 90 (191)
Q Consensus 11 ~~I~~~~~~ak~~~~k~k~~A~~~Lk~KK~~e~ql~k~~~~l~~Le~~~~~ie~a~~~~~v~~alk~g~~aLk~~~~~~~ 90 (191)
..|++....|.+|....+ ..+...-. ..+..+.+..++..+... ...........++.+-..|+.....-+
T Consensus 4 ~EIerMi~eAe~~a~eD~-~~r~~ie~-------rn~ae~~i~~~e~~l~e~-~~~l~~~~k~~i~~~i~~l~~~l~~~d 74 (97)
T d1dkza1 4 DEIQKMVRDAEANAEADR-KFEELVQT-------RNQGDHLLHSTRKQVEEA-GDKLPADDKTAIESALTALETALKGED 74 (97)
T ss_dssp HHHHHHHHHHHHTHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHhHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHh-hccCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 457777777777765332 11111122 233344444444443221 122334445556666666666666667
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12999 91 VNQVHDMMDDIAEQQDVA 108 (191)
Q Consensus 91 id~Ve~~mde~~e~~e~~ 108 (191)
.+.|...+.+++......
T Consensus 75 ~~~i~~~~~~L~~~~~~l 92 (97)
T d1dkza1 75 KAAIEAKMQELAQVSQKL 92 (97)
T ss_dssp HHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888887777655443
No 10
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.93 E-value=72 Score=19.49 Aligned_cols=11 Identities=36% Similarity=0.314 Sum_probs=6.6
Q ss_pred HHHHHHHHHHH
Q psy12999 4 KKQEFLEKKIG 14 (191)
Q Consensus 4 kr~~~le~~I~ 14 (191)
+.++.|..+|+
T Consensus 2 KsMenLq~KI~ 12 (72)
T d1k4ta1 2 KSMMNLQTKID 12 (72)
T ss_dssp GGHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 44566666665
Done!