RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12999
(191 letters)
>gnl|CDD|146145 pfam03357, Snf7, Snf7. This family of proteins are involved in
protein sorting and transport from the endosome to the
vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes
play an important role in the degradation of both lipids
and cellular proteins. In order to perform this
degradative function, vacuoles/lysosomes contain
numerous hydrolases which have been transported in the
form of inactive precursors via the biosynthetic pathway
and are proteolytically activated upon delivery to the
vacuole/lysosome. The delivery of transmembrane
proteins, such as activated cell surface receptors to
the lumen of the vacuole/lysosome, either for
degradation/downregulation, or in the case of
hydrolases, for proper localisation, requires the
formation of multivesicular bodies (MVBs). These late
endosomal structures are formed by invaginating and
budding of the limiting membrane into the lumen of the
compartment. During this process, a subset of the
endosomal membrane proteins is sorted into the forming
vesicles. Mature MVBs fuse with the vacuole/lysosome,
thereby releasing cargo containing vesicles into its
hydrolytic lumen for degradation. Endosomal proteins
that are not sorted into the intralumenal MVB vesicles
are either recycled back to the plasma membrane or Golgi
complex, or remain in the limiting membrane of the MVB
and are thereby transported to the limiting membrane of
the vacuole/lysosome as a consequence of fusion.
Therefore, the MVB sorting pathway plays a critical role
in the decision between recycling and degradation of
membrane proteins. A few archaeal sequences are also
present within this family.
Length = 169
Score = 144 bits (366), Expect = 2e-44
Identities = 75/165 (45%), Positives = 103/165 (62%), Gaps = 8/165 (4%)
Query: 1 MLIKKQEFLEKKIGEEIN-IARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQR 59
L KKQE LEKKI + I + NK AA+ LK+KKRYEKQL Q+DG L+ +E R
Sbjct: 12 ELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQLDGQLANLEQVR 71
Query: 60 EALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPV 119
A+E A TN VL MK A A+KA +K+MD++++ D+MD+I +Q + A EISE +S+ +
Sbjct: 72 MAIENAKTNQEVLNAMKGGAKAMKAMNKNMDIDKIDDLMDEIEDQMEKADEISEMLSDTL 131
Query: 120 AFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAP 164
+ DE+EL+ EL+AL E D++L ELP PS A
Sbjct: 132 DDADEEDEEELDAELDALLDEIGDEEL-------VELPSAPSGAL 169
>gnl|CDD|240425 PTZ00464, PTZ00464, SNF-7-like protein; Provisional.
Length = 211
Score = 72.2 bits (177), Expect = 8e-16
Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 8/152 (5%)
Query: 19 IARTNGTKNKR---AAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTM 75
I RT G R A+Q L++K+ Y+ Q + ++ + E + M
Sbjct: 48 IQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAM 107
Query: 76 KNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELE 135
K AA LK K ++V++V D+ D++A+ + +EI E + D+DEDE+ EL+
Sbjct: 108 KQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELD 167
Query: 136 ALE---QEELDKDLL--KLSTPGGELPEIPST 162
AL+ ++E D L L+ PG +LP++P+
Sbjct: 168 ALDFDMEKEADASYLADALAVPGTKLPDVPTD 199
>gnl|CDD|240422 PTZ00446, PTZ00446, vacuolar sorting protein SNF7-like;
Provisional.
Length = 191
Score = 51.6 bits (123), Expect = 2e-08
Identities = 46/148 (31%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Query: 2 LIKKQEFLEKKIGE-EINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
L KKQ +EKKI + EI + A LKRKK YE++++ I T+E
Sbjct: 39 LEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMI 98
Query: 61 ALEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVA 120
LE + + + + AA+ K + ++ +V ++D I E +D+ +EI++A+S +
Sbjct: 99 NLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLL 158
Query: 121 FGHDVDEDELEKELEALEQEELDKDLLK 148
++VD+DE++KEL+ L+++ +++ LLK
Sbjct: 159 --NNVDDDEIDKELDLLKEQTMEEKLLK 184
>gnl|CDD|237635 PRK14184, PRK14184, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 286
Score = 32.1 bits (73), Expect = 0.15
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 62 LEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVA-KEISEAISNPVA 120
L+G T + +K AL A H V + +D A Q V KE + + V+
Sbjct: 4 LDGKATAATIREELKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVS 63
Query: 121 FGHDVDEDELEKELEAL-----EQEELDKDLLKLSTPGG 154
+ D ++ELE L + ++D LL+L P G
Sbjct: 64 EAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKG 102
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 31.2 bits (71), Expect = 0.36
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 128 DELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAPKDKPKEKAS----------TKER 177
DE+E++L LE ++ K + L G P++P + +E+
Sbjct: 34 DEVERKLRKLE-SKIKKLGIPLK-DTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLE 91
Query: 178 SVEDEIRELEAWAS 191
S+E EI ELE W +
Sbjct: 92 SLEKEINELEEWLN 105
>gnl|CDD|238195 cd00318, Phosphoglycerate_kinase, Phosphoglycerate kinase (PGK) is
a monomeric enzyme which catalyzes the transfer of the
high-energy phosphate group of 1,3-bisphosphoglycerate
to ADP, forming ATP and 3-phosphoglycerate. This
reaction represents the first of the two substrate-level
phosphorylation events in the glycolytic pathway.
Substrate-level phosphorylation is defined as production
of ATP by a process, which is catalyzed by
water-soluble enzymes in the cytosol; not involving
membranes and ion gradients. .
Length = 397
Score = 31.1 bits (71), Expect = 0.36
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 107 VAKEISEAISNPVAFGHDVDEDELEKELEALE 138
VAK +SE + PV F +D E E+ +EAL+
Sbjct: 71 VAKALSELLGQPVTFANDCVGPEAEEAVEALK 102
>gnl|CDD|132931 cd07020, Clp_protease_NfeD_1, Nodulation formation efficiency D
(NfeD) is a membrane-bound ClpP-class protease.
Nodulation formation efficiency D (NfeD; stomatin operon
partner protein, STOPP; DUF107) is a member of
membrane-anchored ClpP-class proteases. Currently, more
than 300 NfeD homologs have been identified - all of
which are bacterial or archaeal in origin. Majority of
these genomes have been shown to possess operons
containing a homologous NfeD/stomatin gene pair, causing
NfeD to be previously named STOPP (stomatin operon
partner protein). NfeD homologs can be divided into two
groups: long and short forms. Long-form homologs have a
putative ClpP-class serine protease domain while the
short form homologs do not. Downstream from the
ClpP-class domain is the so-called NfeD or DUF107
domain. N-terminal region of the NfeD homolog PH1510
(1510-N or PH1510-N) from Pyrococcus horikoshii has been
shown to possess serine protease activity and has a
Ser-Lys catalytic dyad, preferentially cleaving
hydrophobic substrates. Difference in oligomeric form
and catalytic residues between 1510-N (forming a dimer)
and ClpP (forming a tetradecamer) shows a possible
functional difference: 1510-N is likely to have a
regulatory function while ClpP is involved in protein
quality control.
Length = 187
Score = 29.4 bits (67), Expect = 0.80
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 110 EISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGG 154
EI+ AI+ A D LE+ ++ E+ D +++L TPGG
Sbjct: 5 EINGAITPATA-------DYLERAIDQAEEGGADALIIELDTPGG 42
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 29.2 bits (65), Expect = 1.5
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 92 NQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLST 151
+M DD+ ++ +I E S P D+D E K E D DL +
Sbjct: 3954 EDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDM 4013
Query: 152 PGGELPEIPSTAPKDKP--KEKASTKERSVEDEIRELE 187
+ + + A KD+P E + +++++I++ +
Sbjct: 4014 EAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDD 4051
>gnl|CDD|235737 PRK06197, PRK06197, short chain dehydrogenase; Provisional.
Length = 306
Score = 28.5 bits (64), Expect = 2.0
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 19/78 (24%)
Query: 14 GEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLT 73
G + +A N K K AA + + LQ++D L++ L
Sbjct: 40 GAHVVLAVRNLDKGKAAAARITAATPGADVTLQELD--LTS-----------------LA 80
Query: 74 TMKNAADALKAAHKHMDV 91
+++ AADAL+AA+ +D+
Sbjct: 81 SVRAAADALRAAYPRIDL 98
>gnl|CDD|223689 COG0616, SppA, Periplasmic serine proteases (ClpP class)
[Posttranslational modification, protein turnover,
chaperones / Intracellular trafficking and secretion].
Length = 317
Score = 28.5 bits (64), Expect = 2.1
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 110 EISEAISNPVAFGHDVDEDELEKELEALEQEELDKD-LLKLSTPGGE 155
+ AI + D++E+ L A + K +L++++PGG
Sbjct: 65 HVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGS 111
>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein;
Provisional.
Length = 1109
Score = 28.1 bits (63), Expect = 3.1
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 36 KRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDVN--- 92
KR ++ + LQ + L+ + QREA E A +T +L + + D K+ +N
Sbjct: 215 KRSQQLDAYLQALRNQLN-SQRQREA-ERALESTELLA--EQSGDLPKSIVAQFKINREL 270
Query: 93 -----QVHDMMDDIAEQQ 105
Q MD IA QQ
Sbjct: 271 SQALNQQAQRMDLIASQQ 288
>gnl|CDD|177283 PHA00451, PHA00451, protein kinase.
Length = 362
Score = 28.2 bits (63), Expect = 3.1
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 8/35 (22%)
Query: 115 ISNPVAFGHD--------VDEDELEKELEALEQEE 141
I++PV+F HD +D DEL E+EA+ +
Sbjct: 210 ITDPVSFSHDREREPGFPLDPDELIAEVEAIANQR 244
>gnl|CDD|216687 pfam01763, Herpes_UL6, Herpesvirus UL6 like. This family consists
of various proteins from the herpesviridae that are
similar to herpes simplex virus type I UL6 virion
protein. UL6 is essential for cleavage and packaging of
the viral genome.
Length = 556
Score = 28.0 bits (63), Expect = 3.4
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 32 IQALKRKKR-YEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMD 90
I+ LK + K+L++++ LS + + A G+ + A L T+ + +AL+ H
Sbjct: 378 IEDLKEENEDLLKKLRELESELSRLREEARASRGSASEPADLLTL-DTLEALRKLLDH-- 434
Query: 91 VNQVHDMMDDIAEQQDVA 108
++ D+ + + + VA
Sbjct: 435 --ELIDVSGAMDDDRYVA 450
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 27.8 bits (62), Expect = 3.9
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 28 KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHK 87
K ALK K E +++++ T + +AL+ A A L + K +
Sbjct: 149 KPEINVALKELKELEAEIREVQLKTRTWKDLVKALDEAEEELANLRKELRQLEKEKQRLE 208
Query: 88 HMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHD------------VDEDELEKELE 135
+ ++ ++ + + + E I P + + L + LE
Sbjct: 209 R--LRRLLPLLAERKALEQQLAALGEVIDLPPDAVERYEEARAELRAARRNLELLTERLE 266
Query: 136 ALEQE----ELDKDLL 147
AL+ E LD++LL
Sbjct: 267 ALQAELDEISLDEELL 282
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 27.9 bits (62), Expect = 4.0
Identities = 36/192 (18%), Positives = 60/192 (31%), Gaps = 16/192 (8%)
Query: 4 KKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALE 63
K QE + I + T K ++ L EK+L ++D + E RE L+
Sbjct: 1127 KVQELCADRDKLNIEVEDLKKTTPKSLWLKDLDA---LEKELDKLDKEDAKAEEAREKLQ 1183
Query: 64 GANTNTAVLTTMKNAADALKAAHKHM-------DVNQVHDMMDDIAEQQDVAKEI----- 111
A K + A K E ++VA+ +
Sbjct: 1184 RAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKGR 1243
Query: 112 -SEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAPKDKPKE 170
P A +EDE+ + L LD + + + +P+ + K
Sbjct: 1244 AGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVPARRAAARKKP 1303
Query: 171 KASTKERSVEDE 182
AS S D+
Sbjct: 1304 LASVSVISDSDD 1315
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 27.9 bits (62), Expect = 4.3
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 96 DMMDDIAEQQDVAKEISEAISNPVAFGHDV----DEDELEKELEALEQEELDKDLLKLST 151
D+ D IA ++D A I E GH V E+E E+E E E+ + ++
Sbjct: 369 DLYDKIATEED-ATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPV 427
Query: 152 PGGELPEIP 160
PG E+PE+P
Sbjct: 428 PGFEVPEMP 436
>gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase;
Provisional.
Length = 693
Score = 27.7 bits (63), Expect = 4.4
Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 79 ADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALE 138
+A++ H+ + Q I Q+++A E + ++EL+ ++ L
Sbjct: 202 LEAIEFGHEAI---QEL-----IDAQEELAAEAGP----KWEWQPPEVDEELKAAVKELA 249
Query: 139 QEELDK 144
+ +L +
Sbjct: 250 EAKLKE 255
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 27.2 bits (61), Expect = 6.5
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 56 EMQREALEGANTNTAVLTTM--KNAADALKAAHKHMDVNQVHDMMDDIAEQ--QDVAKEI 111
M ++A E A + + KN A+ V + + + ++ + K++
Sbjct: 508 RMVKDAEEYAAEDKKRKERIEAKNEAEEY--------VYSLEKSLKEEGDKLPEADKKKV 559
Query: 112 SEAISNPVAFGHDVDEDELEKELEALEQE 140
EAI D++E+E + E L++
Sbjct: 560 EEAIEWLKEELEGEDKEEIEAKTEELQKV 588
>gnl|CDD|185680 cd02165, NMNAT, Nicotinamide/nicotinate mononucleotide
adenylyltransferase. Nicotinamide/nicotinate
mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT).
NMNAT represents the primary bacterial and eukaryotic
adenylyltransferases for nicotinamide-nucleotide and for
the deamido form, nicotinate nucleotide. It is an
indispensable enzyme in the biosynthesis of NAD(+) and
NADP(+). Nicotinamide-nucleotide adenylyltransferase
synthesizes NAD via the salvage pathway, while
nicotinate-nucleotide adenylyltransferase synthesizes
the immediate precursor of NAD via the de novo pathway.
Human NMNAT displays unique dual substrate specificity
toward both NMN and NaMN, and can participate in both de
novo and salvage pathways of NAD synthesis.
Length = 192
Score = 26.8 bits (60), Expect = 6.5
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 17/61 (27%)
Query: 117 NPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAPKDKPKEKASTKE 176
+P GH L EALE+ LD+ LL +PS P KP + AS +
Sbjct: 9 DPPHLGH------LAIAEEALEELGLDRVLL-----------LPSANPPHKPPKPASFEH 51
Query: 177 R 177
R
Sbjct: 52 R 52
>gnl|CDD|215837 pfam00285, Citrate_synt, Citrate synthase.
Length = 352
Score = 27.1 bits (61), Expect = 6.5
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
Query: 94 VHDMMDDIAEQQDVAKEISEAISNPVA---FGHDV--DED----ELEKELEALEQEELDK 144
V M+++I ++V + I +A+ FGH V D L+K L E D
Sbjct: 221 VLRMLEEIGSPENVEEYIEKALDKGERLMGFGHRVYKTYDPRAKILKKFARELAAELGDD 280
Query: 145 DLLKLSTPGGELPEIPSTAPKD 166
LL+++ +I A +D
Sbjct: 281 PLLEIAE------KIEEVALED 296
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 26.8 bits (59), Expect = 8.0
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 8 FLEKKIGEEINIARTNGTKNK--RAAIQA------LKRKKRYEKQLQQIDGTLSTIEMQR 59
+ I E I + R T + AA A LKR Y+ + + LS E QR
Sbjct: 420 LFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQR 479
Query: 60 EALEGANTNTAVLTTMKNAADAL 82
A+ A A + + A AL
Sbjct: 480 LAIARAILKNAPILVLDEATSAL 502
>gnl|CDD|223972 COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy
production and conversion].
Length = 598
Score = 26.9 bits (60), Expect = 8.1
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 114 AISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGELPE 158
++ NPV D D + +K LE L ++E LL + P
Sbjct: 346 SVKNPVDLTGDADAERYKKTLEILLRDENVDALLVIVLPPASADP 390
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 26.9 bits (60), Expect = 8.6
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 142 LDKDLLKLSTP----GGELPEIPSTAPKDKPKEKASTKERSVEDEIRELE 187
+DL K+S G EL E+P P E S E + + ELE
Sbjct: 199 GAEDLDKVSKILNELGFELYEVP--EFDGGPSELISELEEVIAEIQDELE 246
>gnl|CDD|220506 pfam09989, DUF2229, CoA enzyme activase uncharacterized domain
(DUF2229). Members of this family include various
bacterial hypothetical proteins, as well as CoA enzyme
activases. The exact function of this domain has not, as
yet, been defined.
Length = 218
Score = 26.4 bits (59), Expect = 8.8
Identities = 12/47 (25%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 4 KKQEFLEK---KIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQ 47
K +E L K ++G+++ I + + K+A +AL+ ++ ++K L++
Sbjct: 123 KDKEALAKRLYELGKKLGI---SKEEIKKAVEKALEEQEAFKKDLRK 166
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.306 0.124 0.323
Gapped
Lambda K H
0.267 0.0865 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,837,588
Number of extensions: 937978
Number of successful extensions: 1439
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1406
Number of HSP's successfully gapped: 203
Length of query: 191
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 100
Effective length of database: 6,901,388
Effective search space: 690138800
Effective search space used: 690138800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 56 (25.1 bits)