RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12999
(191 letters)
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal
tail of CHMP4B, ESCRT-III, CHMPS, protein-transport
protein complex, BROX; 3.80A {Homo sapiens}
Length = 104
Score = 76.2 bits (187), Expect = 1e-18
Identities = 54/105 (51%), Positives = 75/105 (71%), Gaps = 5/105 (4%)
Query: 88 HMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLL 147
+MD+++V ++M DIA+QQ++A+EIS AIS PV FG + DEDEL ELE LEQEELDK+LL
Sbjct: 2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLL 61
Query: 148 KLSTPGG-ELPEIPSTAPKDKPKEKASTKERSVEDEIRELEAWAS 191
++S P LP +PS A KP +K + +D+++ELE WA
Sbjct: 62 EISGPETVPLPNVPSIALPSKPAKKKEEE----DDDMKELENWAG 102
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein
transport, HIV-1; 1.80A {Homo sapiens}
Length = 79
Score = 72.2 bits (177), Expect = 2e-17
Identities = 51/63 (80%), Positives = 56/63 (88%)
Query: 1 MLIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQRE 60
ML KKQEFLEKKI +E+ A+ +GTKNKRAA+QALKRKKRYEKQL QIDGTLSTIE QRE
Sbjct: 17 MLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 76
Query: 61 ALE 63
ALE
Sbjct: 77 ALE 79
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP,
IST1, coiled coil, cytoplasm, lipoprotein, membrane,
myristate, phosphoprotein; 4.00A {Homo sapiens}
Length = 218
Score = 54.4 bits (130), Expect = 1e-09
Identities = 29/186 (15%), Positives = 70/186 (37%), Gaps = 4/186 (2%)
Query: 3 IKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREAL 62
I+ + E+K+ + A G K I K R K + ++ + + + +
Sbjct: 30 IRDIQREEEKVKRSVKDAAKKG--QKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGM 87
Query: 63 EGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFG 122
+ V +++ + + +KA + + ++ M +++++ A I E + + F
Sbjct: 88 KNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLED--TFE 145
Query: 123 HDVDEDELEKELEALEQEELDKDLLKLSTPGGELPEIPSTAPKDKPKEKASTKERSVEDE 182
D++E+E+E E L + P+ AS E E+
Sbjct: 146 SMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEA 205
Query: 183 IRELEA 188
+ +++
Sbjct: 206 LEAMQS 211
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein
transport; 2.80A {Homo sapiens} PDB: 3frv_A
Length = 179
Score = 42.8 bits (100), Expect = 1e-05
Identities = 23/152 (15%), Positives = 63/152 (41%), Gaps = 6/152 (3%)
Query: 3 IKKQEFLEKKIGEEINIARTNGTKNK-RAAIQALKRKKRYEKQLQQIDGTLSTIEMQREA 61
I+ + E+K+ + A G K+ + + R ++ +L ++++ M
Sbjct: 30 IRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMG--- 86
Query: 62 LEGANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPV-- 119
++ V +++ + + +KA + + ++ M +++++ A I E + +
Sbjct: 87 MKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFES 146
Query: 120 AFGHDVDEDELEKELEALEQEELDKDLLKLST 151
+ E+E E E++ + E L K +
Sbjct: 147 MDDQEEMEEEAEMEIDRILFEITAGALGKAPS 178
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 1e-04
Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 48/159 (30%)
Query: 1 ML-IK--KQEFLEKKI---------GEEINIARTNGTKN-----KRAAIQALK---RKKR 40
ML I QE ++ + G+++ I+ NG KN ++ L RK +
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 41 YEKQLQQIDGTLSTIEMQREALEGANTNTAVLTT--------MKNAADALKAAHKHMDVN 92
L Q S I L+ +N L + A+D + +V+
Sbjct: 398 APSGLDQ-----SRIPFSERKLKFSNR---FLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 93 --------QVHDMMD--DIAEQQD-VAKEISEAI-SNPV 119
V+D D D+ +++ I + I PV
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Score = 33.9 bits (77), Expect = 0.031
Identities = 36/207 (17%), Positives = 64/207 (30%), Gaps = 68/207 (32%)
Query: 7 EFLEKKIGEEI-NIARTN---------GTKNKR-----AAI---QALKRKKRYEKQLQQI 48
+ G I +I N G K KR +A+ + K + EK ++I
Sbjct: 1651 NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 49 DGTLS--TIEMQREALEGANT-NT--AVLTT-------MKNA----ADALKAAH------ 86
+ + T ++ L + T T A+ +K+ ADA A H
Sbjct: 1711 NEHSTSYTFRSEKGLL--SATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA 1768
Query: 87 ------KHMDVNQ----VH---DMMDDIAEQQDVAKEISEAIS-NPVAFGHDVDEDELEK 132
M + V M + ++ + I+ NP ++ L+
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 133 ELEALEQEELDKDLLKLSTPGGELPEI 159
+E + + G L EI
Sbjct: 1829 VVERVGKRT------------GWLVEI 1843
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 2e-04
Identities = 38/203 (18%), Positives = 70/203 (34%), Gaps = 54/203 (26%)
Query: 2 LIKKQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKR-------YEKQLQQIDGTLST 54
+++ + L +I +R++ + N + I +++ + R YE L + +
Sbjct: 198 VLEMLQKLLYQIDPNWT-SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN- 255
Query: 55 IEMQREALEGANTN--TAVLTTMKNAADALKAAH-KHMDVNQVHDMMDDIAEQQDV-AKE 110
+A N + + T K D L AA H+ ++ + E + + K
Sbjct: 256 ----AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKY 310
Query: 111 IS--------EAIS-NPVA---FG---HD----------VDEDEL----EKELEALEQEE 141
+ E ++ NP D V+ D+L E L LE E
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 142 LDKDLLKLSTPGGELPE---IPS 161
K +LS P IP+
Sbjct: 371 YRKMFDRLSV----FPPSAHIPT 389
Score = 27.1 bits (59), Expect = 4.0
Identities = 15/83 (18%), Positives = 24/83 (28%), Gaps = 5/83 (6%)
Query: 82 LKAAHKHMDVNQVHDMMDDI---AEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALE 138
A + D V DM I E + F + E+ ++
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF--WTLLSKQEEMVQKFV 83
Query: 139 QEELDKDLLKLSTPGGELPEIPS 161
+E L + L +P PS
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPS 106
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 33.9 bits (78), Expect = 0.025
Identities = 28/194 (14%), Positives = 78/194 (40%), Gaps = 30/194 (15%)
Query: 5 KQEFLEKKIGEEINIARTNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEG 64
+ + K+ +++ I + + K+ I + + ++++ + + ++ + LE
Sbjct: 897 YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE- 955
Query: 65 ANTNTAVLTTMKNAADALKAA--HKHMDVNQVHDMMDDIAEQQD----VAKEISEAISNP 118
T + +++ + L+ + N+V + ++IA+ + E
Sbjct: 956 -ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014
Query: 119 VAFGHDVDE--DELEKELEALEQ--EELDKDLLKLSTPGGELPEIPSTAPKDKPKEKAST 174
+ H+ ++ EL+++ L+ EEL++ + D+ KE T
Sbjct: 1015 DKYKHETEQLVSELKEQNTLLKTEKEELNRRI------------------HDQAKEITET 1056
Query: 175 KERSVEDEIRELEA 188
E+ + +E ++LE
Sbjct: 1057 MEKKLVEETKQLEL 1070
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III,
CHMPS, membrane protein-transport P complex, BROX; 2.60A
{Homo sapiens} PDB: 3um1_B
Length = 69
Score = 31.5 bits (71), Expect = 0.026
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 124 DVDEDELEKELEALEQE-ELDKDLLKLSTPGGELPEIPSTAPKDKPKEKA 172
++DED+LE EL+AL E D+D L P IP P D +
Sbjct: 7 ELDEDDLEAELDALGDELLADEDSSYLDEAAS-APAIPEGVPTDTKNKDG 55
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.42
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 15/35 (42%)
Query: 131 EK-ELEALEQEELDKDLLKLSTPGGELPEIPSTAP 164
EK L+ L+ LKL +AP
Sbjct: 18 EKQALKKLQAS------LKLYADD--------SAP 38
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
hydrogene metabolism, periplasm; 1.60A {Desulfovibrio
vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A*
1gx7_A*
Length = 421
Score = 29.7 bits (67), Expect = 0.66
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 6 QEFLEKKIGEEINIARTNGTKNKRAAIQALKRKK 39
+E G ++ +A +G K + +K K
Sbjct: 334 KEATVNVGGTDVKVAVVHGAKRFKQVCDDVKAGK 367
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 29.3 bits (66), Expect = 0.71
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 6 QEFLEKKIGEEINIARTNGTKNKRAAIQALKRKK 39
+E + + N+A NG N +++ +
Sbjct: 455 KEAEVEINNNKYNVAVINGASNLFKFMKSGMINE 488
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 28.8 bits (65), Expect = 1.2
Identities = 5/33 (15%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 104 QQDVAKEISEAISNPVAFGHDVDEDELEKELEA 136
+A E+++ V + ++ E + L++
Sbjct: 202 LTQLAAELTKQSGKQVTY-QNLSEADFAAALKS 233
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 28.4 bits (64), Expect = 1.7
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 18/116 (15%)
Query: 26 KNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAAD----A 81
A +AL +K E + + + G +ST + R+ E + L K A A
Sbjct: 48 AYPEDAARALDLRK-GELRSKDLPGIISTWQELRQLREQIRS----LEEEKEAVTEAVRA 102
Query: 82 LKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEAL 137
L + V Q A +++ K+++ E +LE++
Sbjct: 103 LVVNQDNSQVQQDPQYQSLRARGREIRKQLTLL---------YPKEAQLEEQFYLR 149
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 28.0 bits (63), Expect = 1.7
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 104 QQDVAKEISEAISNPVAFGHDVDEDELEKELEA 136
++A+ +SE V V +E + L
Sbjct: 206 FDELAQILSEVSGKKVVH-QPVSFEEEKNFLVN 237
>2cyg_A Beta-1, 3-glucananse; endo-beta-1,3-glucanase,
(beta-alpha)8-TIM-barrel, B-cell epitopes, allergen,
banana, hydrolase; 1.45A {Musa acuminata} SCOP: c.1.8.3
Length = 312
Score = 27.9 bits (61), Expect = 2.3
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 53 STIEMQREALEGANTNTAVLTTMKNAADALKAAHKHMDV 91
I + E + G++ +L M+N +AL +A +
Sbjct: 87 RYIAVGNELIPGSDLAQYILPAMRNIYNALSSAGLQNQI 125
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus
faecalis V583, STR genomics, PSI-2, protein structure
initiative; 1.95A {Enterococcus faecalis}
Length = 425
Score = 27.7 bits (62), Expect = 2.3
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 111 ISEAISNPVAFGHDVDEDELEKE----LEALEQEELDKD 145
+ E I P + + ++E LE DK
Sbjct: 113 LKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQ 151
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus
stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Length = 394
Score = 27.8 bits (63), Expect = 2.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 107 VAKEISEAISNPVAFGHDVDEDELEKELEALE 138
VAK + E + PVA ++ DE++ ++ L
Sbjct: 76 VAKRLGELLERPVAKTNEAVGDEVKAAVDRLN 107
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 27.6 bits (62), Expect = 2.6
Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 9/81 (11%)
Query: 80 DALKAAHKHMDVNQVHDMMDDIAEQQ-DVAKEIS----EAISNPVAFGHDVDEDELEKEL 134
++ + M + + ++ D+ E+ + FG + E L
Sbjct: 101 KNVRGYREAM-EEEARAFFGEWRGEERDLDHEMLALSLRLLGR-ALFGKPLSPSLAEHAL 158
Query: 135 EALE--QEELDKDLLKLSTPG 153
+AL+ + L L
Sbjct: 159 KALDRIMAQTRSPLALLDLAA 179
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi
malaria parasite; 2.70A {Plasmodium falciparum} PDB:
1ltk_A* 3oza_A
Length = 417
Score = 27.5 bits (62), Expect = 2.7
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 107 VAKEISEAISNPVAFGHDVDEDELEKELEALE 138
VA+ + + V F +D E+E ++ A +
Sbjct: 82 VAETLKGLLGEEVLFLNDCVGKEVEDKINAAK 113
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability,
crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga
maritima} SCOP: c.86.1.1
Length = 398
Score = 27.4 bits (62), Expect = 2.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 107 VAKEISEAISNPVAFGHDVDEDELEKELEALE 138
VAK +SE + V F V DE++K +E L+
Sbjct: 75 VAKRLSELLGKEVKFVPAVVGDEVKKAVEELK 106
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia,
transferase, phosphoprotein, KI glycolysis,
nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens}
PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A*
2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A*
2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A*
...
Length = 416
Score = 27.5 bits (62), Expect = 3.0
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 107 VAKEISEAISNPVAFGHDVDEDELEKELEALE 138
VA E+ + V F D E+EK
Sbjct: 80 VAVELKSLLGKDVLFLKDCVGPEVEKACANPA 111
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl
acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A
{Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*
Length = 415
Score = 27.5 bits (62), Expect = 3.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 107 VAKEISEAISNPVAFGHDVDEDELEKELEALE 138
VAKE+ + V F +D E+E ++A
Sbjct: 79 VAKELQSLLGKDVTFLNDCVGPEVEAAVKASA 110
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly
mutant, permutation, permuted sequence, protein foldin
domain protein; 2.30A {Saccharomyces cerevisiae} SCOP:
c.86.1.1
Length = 416
Score = 27.5 bits (62), Expect = 3.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 107 VAKEISEAISNPVAFGHDVDEDELEKELEALE 138
VAKE+ + V F +D E+E ++A
Sbjct: 9 VAKELQSLLGKDVTFLNDCVGPEVEAAVKASA 40
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural
genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A
{Campylobacter jejuni subsp}
Length = 403
Score = 27.5 bits (62), Expect = 3.3
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 107 VAKEISEAISNPVAFGHDVDEDELEKELEALE 138
VAK ++ + + DV ++ + + L+
Sbjct: 80 VAKRLARLLDKEIVMAKDVIGEDAKTKAMNLK 111
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics
initiative, RSGI, structural genomics, transferase;
1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Length = 390
Score = 27.0 bits (61), Expect = 3.6
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 107 VAKEISEAISNPVAFGHDVDEDELEKELEALE 138
V + + + +E +E EAL
Sbjct: 73 VGEALRAHLPEARFAPFPPGSEEARREAEALR 104
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex,
alpha / beta motif, protease, membr protein stomatin,
hydrolase-protein binding complex; 2.25A {Pyrococcus
horikoshii} PDB: 3bpp_A 2deo_A
Length = 230
Score = 26.9 bits (59), Expect = 3.8
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 110 EISEAISNPVAFGHDVDEDELEKELEALEQEELDKDLLKLSTPGGEL 156
+I I++ D+ ++ + EQ+ + +++L TPGG
Sbjct: 14 QIKGQITSYTY-------DQFDRYITIAEQDNAEAIIIELDTPGGRA 53
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 26.9 bits (60), Expect = 4.4
Identities = 5/33 (15%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 104 QQDVAKEISEAISNPVAFGHDVDEDELEKELEA 136
+++A +SEA + + V + + +
Sbjct: 204 MKELAAILSEASGTEIKY-EPVSLETFAEMYDE 235
>1p7t_A MSG, malate synthase G; TIM barrel, glyoxylate cycle, acetyl-COA,
cysteine-sulfenic lyase; HET: ACO PG4; 1.95A
{Escherichia coli str} SCOP: c.1.13.1 PDB: 1y8b_A
1d8c_A* 2jqx_A
Length = 731
Score = 27.0 bits (60), Expect = 4.6
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 79 ADALKAAHKH-MDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELE 135
A L A H H +V V + + + + ++ PVA + E+++EL+
Sbjct: 540 AATLHALHYHQTNVQSVQANIAQTEFNAEFEPLLDDLLTIPVAENANWSAQEIQQELD 597
>3kl2_A Putative isochorismatase; structural genomics, unknown function,
PSI-2, protein struct initiative; 2.30A {Streptomyces
avermitilis}
Length = 226
Score = 25.8 bits (57), Expect = 9.7
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 12/74 (16%)
Query: 64 GANTNTAVLTTMKNAADALKAAHKHMDVNQVHDMMDDI-AEQQDVAKEISEAISNPVAFG 122
G TN V +TM+ + + V + D + E+ + A + F
Sbjct: 158 GFLTNCCVESTMRTGYE------RGFRVITLTDCVAATSQEEHNNAISYDFPM-----FS 206
Query: 123 HDVDEDELEKELEA 136
+ ++ LE
Sbjct: 207 VPMTSADVIAALEG 220
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.306 0.124 0.323
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,924,034
Number of extensions: 178345
Number of successful extensions: 607
Number of sequences better than 10.0: 1
Number of HSP's gapped: 592
Number of HSP's successfully gapped: 106
Length of query: 191
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,244,745
Effective search space: 437208735
Effective search space used: 437208735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 54 (24.9 bits)