RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12999
(191 letters)
>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein
C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}
Length = 100
Score = 27.8 bits (61), Expect = 0.35
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 81 ALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAIS-----NPVAFGHDVDEDELEKELE 135
A + + D + ++ + E + I H V+ +LEK+L
Sbjct: 33 AKEVLQPYKDRFILQEVDITLPENSTWYERYKFDIPVFHLNGQFLMMHRVNTSKLEKQLR 92
Query: 136 ALEQE 140
L
Sbjct: 93 KLSGP 97
>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate
dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId:
1583]}
Length = 163
Score = 28.3 bits (62), Expect = 0.40
Identities = 13/70 (18%), Positives = 20/70 (28%)
Query: 75 MKNAADALKAAHKHMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKEL 134
K A V + ++ +S P G D E +L
Sbjct: 78 GKGYTSYGVATSAIRIAKAVMADAHAELVVSNRRDDMGMYLSYPAIIGRDGVLAETTLDL 137
Query: 135 EALEQEELDK 144
EQE+L +
Sbjct: 138 TTDEQEKLLQ 147
>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts),
dimerisation domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 109
Score = 24.5 bits (53), Expect = 5.0
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 99 DDIAEQQDVAKEISEAI--SNPVAFGHDVDEDELEKELEALEQE 140
+ A D+ + + + + P++ G DE E E + L Q
Sbjct: 35 ELKANLADLGRRLGQHVVGMAPLSVGSLDDEPGGEAETKMLSQP 78
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 25.2 bits (54), Expect = 5.2
Identities = 25/165 (15%), Positives = 58/165 (35%), Gaps = 8/165 (4%)
Query: 28 KRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLTTMKNAADALKAAHK 87
+R I+ Y KQL+ + + +E E T+ + N + H+
Sbjct: 34 ERTEIE-----LSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMNDYAGQHE 88
Query: 88 HMDVNQVHDMMDDIAEQQDVAKEISEAISNPVAFGHDVDED---ELEKELEALEQEELDK 144
+ N ++ D+A K+ ++ + E +LE E++ +
Sbjct: 89 VISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEA 148
Query: 145 DLLKLSTPGGELPEIPSTAPKDKPKEKASTKERSVEDEIRELEAW 189
D + + + A +K +++A + + ED + +
Sbjct: 149 DRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSI 193
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 25.5 bits (54), Expect = 5.5
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 102 AEQQDVAKEISEAISNPVAFGHDVDEDELEKEL-EALEQEE 141
A+Q + I + +V +EL K + E + ++
Sbjct: 394 ADQPTDCRFICNEWEIGMEIDTNVKREELAKLINEVIAGDK 434
>d1nija2 d.237.1.1 (A:224-318) Hypothetical protein YjiA, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 95
Score = 24.2 bits (52), Expect = 5.9
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 119 VAFGHDVDEDELEKELEALEQ 139
V G + E+E+ L +
Sbjct: 75 VFIGIQLPEEEIRAAFAGLRK 95
>d1hbnc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 247
Score = 24.8 bits (54), Expect = 8.1
Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 16/119 (13%)
Query: 30 AAIQALKRKKRYEKQLQQID-GTLS---TIEMQREALEGANTNTAVLTTMKNAADALKAA 85
A Q R + Y + + D GTLS IE + LE + A ++
Sbjct: 93 APAQPYVRSRAYLCRYRGADAGTLSGRQIIETRERDLEKISKELLETEFFDPARSGVRGK 152
Query: 86 --HKHMDVNQVHDMMDDIAEQQDVAKE----------ISEAISNPVAFGHDVDEDELEK 132
H H MM D+ +Q K+ I + + PV G +DE+ L +
Sbjct: 153 SVHGHSLRLDEDGMMFDMLRRQIYNKDTGRVEMVKNQIGDELDEPVDLGEPLDEETLME 211
>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F
(AhpF), N-terminal domain {Salmonella typhimurium
[TaxId: 90371]}
Length = 102
Score = 23.9 bits (52), Expect = 8.4
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 97 MMDDIAEQQDVAKEISEAISNPVAFGHDVDEDELEKELEALEQEELD-KDLLKLSTPGGE 155
M+D + + E ++ PV +D+ E++ L E + D +
Sbjct: 1 MLD--TNMKTQLRAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTL 58
Query: 156 LPEIPSTA 163
PS
Sbjct: 59 PVRKPSFL 66
>d1e6vc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 248
Score = 24.4 bits (53), Expect = 8.8
Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 16/119 (13%)
Query: 30 AAIQALKRKKRYEKQLQQID-GTLS---TIEMQREALEGANTNTAVLTTMKNAADALKAA 85
A I R + Y + + +D G+LS IE++ LE A ++ A
Sbjct: 92 APIHPYIRARMYMWRYRGVDTGSLSGRQIIEVRERDLEKIAKELLETEIFDPARSGVRGA 151
Query: 86 --HKHMDVNQVHDMMDDIAEQQDVAKE----------ISEAISNPVAFGHDVDEDELEK 132
H H + +M + + +E + + P+ G DED+L++
Sbjct: 152 TVHGHALRLDENGLMLHALRRYRLNEETGEVEYVKDQVGIELDEPIPVGAPADEDDLKE 210
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.306 0.124 0.323
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 683,732
Number of extensions: 31247
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 39
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 50 (23.1 bits)