Query psy130
Match_columns 199
No_of_seqs 137 out of 876
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 16:33:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0861|consensus 100.0 8.7E-60 1.9E-64 361.6 20.3 197 2-198 1-197 (198)
2 KOG0859|consensus 100.0 8.3E-42 1.8E-46 267.2 11.9 175 3-194 2-181 (217)
3 COG5143 SNC1 Synaptobrevin/VAM 100.0 1.6E-34 3.5E-39 227.0 15.9 188 4-198 1-189 (190)
4 KOG0862|consensus 100.0 1.7E-30 3.7E-35 207.1 18.1 183 1-194 1-190 (216)
5 KOG0860|consensus 99.7 5E-18 1.1E-22 123.5 7.6 59 136-194 27-85 (116)
6 PF13774 Longin: Regulated-SNA 99.7 4.6E-17 1E-21 113.7 10.6 77 45-124 2-80 (83)
7 PF00957 Synaptobrevin: Synapt 99.7 2E-17 4.4E-22 117.1 6.9 60 137-196 2-63 (89)
8 PF04099 Sybindin: Sybindin-li 95.6 0.53 1.1E-05 35.9 12.2 98 4-104 1-113 (142)
9 COG5143 SNC1 Synaptobrevin/VAM 94.4 0.039 8.5E-07 44.1 3.2 53 139-191 95-147 (190)
10 PF09426 Nyv1_N: Vacuolar R-SN 93.3 0.21 4.5E-06 37.7 5.0 59 41-100 43-110 (141)
11 PF04086 SRP-alpha_N: Signal r 81.0 3.9 8.5E-05 34.4 5.5 74 56-131 18-99 (279)
12 KOG3369|consensus 80.8 9.5 0.00021 30.3 7.0 46 57-104 123-168 (199)
13 KOG1983|consensus 80.3 1.3 2.7E-05 44.2 2.5 38 155-192 944-981 (993)
14 PF04799 Fzo_mitofusin: fzo-li 80.2 9.9 0.00021 30.0 7.0 51 138-188 109-159 (171)
15 PF03310 Cauli_DNA-bind: Cauli 77.5 10 0.00022 28.2 5.9 56 140-195 1-57 (121)
16 COG5122 TRS23 Transport protei 76.1 29 0.00063 25.6 11.5 50 53-104 55-104 (134)
17 KOG3368|consensus 72.8 39 0.00084 25.6 11.8 95 2-100 1-102 (140)
18 KOG0810|consensus 72.6 16 0.00034 31.5 6.8 61 138-198 206-276 (297)
19 PF03908 Sec20: Sec20; InterP 68.4 30 0.00065 24.1 6.5 46 142-190 5-50 (92)
20 KOG0938|consensus 67.8 26 0.00057 30.8 7.1 53 54-107 40-93 (446)
21 PF00957 Synaptobrevin: Synapt 65.6 41 0.00088 23.0 7.6 53 138-190 10-62 (89)
22 KOG0811|consensus 63.3 32 0.0007 29.1 6.8 45 137-181 179-223 (269)
23 PF06008 Laminin_I: Laminin Do 62.9 52 0.0011 27.4 8.1 45 138-182 192-236 (264)
24 PF01217 Clat_adaptor_s: Clath 60.4 68 0.0015 23.8 11.9 49 58-107 48-96 (141)
25 PHA03011 hypothetical protein; 49.1 51 0.0011 23.7 4.8 54 123-178 65-118 (120)
26 COG3524 KpsE Capsule polysacch 46.8 31 0.00068 29.9 4.1 51 137-187 229-292 (372)
27 PF12098 DUF3574: Protein of u 46.6 79 0.0017 22.9 5.6 68 36-108 18-90 (104)
28 KOG3230|consensus 45.4 26 0.00055 28.4 3.2 36 121-165 118-153 (224)
29 smart00397 t_SNARE Helical reg 43.0 79 0.0017 19.5 7.3 51 137-187 11-61 (66)
30 PF10112 Halogen_Hydrol: 5-bro 39.7 1.2E+02 0.0025 24.1 6.3 55 122-181 136-194 (199)
31 PF05739 SNARE: SNARE domain; 39.1 97 0.0021 19.3 7.6 44 137-180 3-46 (63)
32 PF04628 Sedlin_N: Sedlin, N-t 36.8 1.7E+02 0.0037 21.6 6.9 49 58-106 55-106 (132)
33 PF13077 DUF3909: Protein of u 35.1 69 0.0015 22.3 3.6 37 60-96 69-107 (108)
34 PLN03223 Polycystin cation cha 34.9 89 0.0019 32.7 5.7 45 136-180 1579-1623(1634)
35 cd00193 t_SNARE Soluble NSF (N 34.2 1.1E+02 0.0024 18.5 7.3 46 138-184 6-52 (60)
36 TIGR02338 gimC_beta prefoldin, 31.3 1.7E+02 0.0036 21.0 5.4 45 143-190 61-105 (110)
37 smart00096 UTG Uteroglobin. 31.0 1.3E+02 0.0028 20.1 4.3 41 123-163 20-61 (69)
38 PHA03386 P10 fibrous body prot 30.7 1.2E+02 0.0026 21.5 4.3 16 138-153 19-34 (94)
39 PF06825 HSBP1: Heat shock fac 30.3 96 0.0021 19.7 3.4 19 164-182 33-51 (54)
40 PF04510 DUF577: Family of unk 30.2 1.2E+02 0.0027 23.9 4.8 95 77-179 65-160 (174)
41 KOG2196|consensus 30.0 1.5E+02 0.0033 24.8 5.4 79 84-173 65-151 (254)
42 PF06008 Laminin_I: Laminin Do 29.8 2.3E+02 0.0049 23.5 6.7 53 139-191 53-105 (264)
43 PF01099 Uteroglobin: Uteroglo 29.3 93 0.002 20.2 3.5 43 122-164 17-60 (67)
44 PF07352 Phage_Mu_Gam: Bacteri 29.1 2.5E+02 0.0055 21.1 6.8 52 137-188 9-61 (149)
45 COG3074 Uncharacterized protei 29.1 1.8E+02 0.004 19.5 7.2 56 136-191 16-71 (79)
46 PF05527 DUF758: Domain of unk 28.4 78 0.0017 25.4 3.5 78 83-166 108-185 (186)
47 PF04155 Ground-like: Ground-l 28.2 74 0.0016 21.2 2.9 12 149-160 10-21 (76)
48 PF08858 IDEAL: IDEAL domain; 28.1 62 0.0013 18.7 2.2 19 149-167 9-27 (37)
49 PF02520 DUF148: Domain of unk 27.8 1.3E+02 0.0027 21.5 4.3 38 124-164 25-62 (113)
50 KOG3065|consensus 27.7 2.4E+02 0.0052 24.0 6.4 61 138-198 79-139 (273)
51 KOG3003|consensus 27.4 3.3E+02 0.0071 22.7 6.9 51 138-189 71-121 (236)
52 KOG2740|consensus 26.1 1.4E+02 0.003 26.6 4.8 37 71-107 60-96 (418)
53 PF13040 DUF3901: Protein of u 25.8 1.3E+02 0.0028 17.9 3.2 26 151-176 9-34 (40)
54 PF12277 DUF3618: Protein of u 25.5 1.5E+02 0.0032 18.1 3.7 27 140-166 5-31 (49)
55 PF13956 Ibs_toxin: Toxin Ibs, 24.3 9 0.0002 18.7 -1.6 9 1-9 1-9 (19)
56 TIGR01478 STEVOR variant surfa 24.0 57 0.0012 28.0 2.0 40 121-160 82-125 (295)
57 TIGR03545 conserved hypothetic 23.9 2.1E+02 0.0046 26.8 6.0 56 133-188 186-241 (555)
58 KOG1696|consensus 23.6 3.8E+02 0.0082 21.3 6.5 60 123-182 101-166 (193)
59 PF00306 ATP-synt_ab_C: ATP sy 23.2 1.3E+02 0.0028 21.5 3.6 39 155-193 4-44 (113)
60 PTZ00370 STEVOR; Provisional 22.2 66 0.0014 27.6 2.1 40 121-160 81-124 (296)
61 PF12352 V-SNARE_C: Snare regi 22.2 2.2E+02 0.0047 18.0 7.5 50 136-185 6-55 (66)
62 PF14662 CCDC155: Coiled-coil 21.5 4.4E+02 0.0095 21.3 6.7 53 141-194 39-95 (193)
63 PF10504 DUF2452: Protein of u 21.2 4.1E+02 0.0088 20.8 6.4 47 139-191 31-77 (159)
64 TIGR01837 PHA_granule_1 poly(h 21.1 3.4E+02 0.0073 19.8 6.5 43 141-183 66-113 (118)
65 COG1463 Ttg2C ABC-type transpo 20.5 3.8E+02 0.0081 23.4 6.6 54 138-191 211-264 (359)
No 1
>KOG0861|consensus
Probab=100.00 E-value=8.7e-60 Score=361.64 Aligned_cols=197 Identities=59% Similarity=0.984 Sum_probs=190.7
Q ss_pred ceeEEEEEEEeCCCcceeeeeccCCCCcceeeechHHHHHHHHHHHHHhhcCCCCceeEeeCceEEEEEEeCCCEEEEEE
Q psy130 2 VKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSIKEGEYMCHVFVRGDNLAGILV 81 (199)
Q Consensus 2 ~kl~~~~v~~~~~~~~~~l~~~~d~~~~~~f~r~~~~e~~~~~s~~i~~~~~~~~k~s~~~~~~~~h~~~~~~~i~~~~i 81 (199)
||||+|.|++++..+|.+|+.++|||+||||+|++++||+.|+++++++|.+|++|++++++.|.+|+|++.||++++++
T Consensus 1 Mki~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~Efm~F~sktvaeRt~~g~rqsvk~~~Y~~h~yvrndgL~~V~~ 80 (198)
T KOG0861|consen 1 MKIYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQEFMTFISKTVAERTGPGQRQSVKHEEYLVHVYVRNDGLCGVLI 80 (198)
T ss_pred CceEEEEEEeeCCcchhhhhhhcccccccceeeccHHHHHHHHHHHHHHhcCcccccccccceeEEEEEEecCCeeEEEE
Confidence 89999999999877899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCCCCccHHHHHHhcCCchhhhHHHHHHHhHHHHHHHHHhhHHHH
Q psy130 82 SDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISFPQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAV 161 (199)
Q Consensus 82 td~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~f~~l~~l~~~y~~~~~~dkl~~i~~~v~evk~iM~~NIdki 161 (199)
+|.+||.|+||.+|+++.++|....+..+|+......++||.|+.++.+|+||.++|+|.++|++|||+|.||+++|+.+
T Consensus 81 ~D~eYP~rvA~tLL~kvld~~~~k~~~~~W~~~~~~~~~~~~L~~~l~kyqdP~ead~l~kvQ~EldETKiiLhkTiesV 160 (198)
T KOG0861|consen 81 ADDEYPVRVAFTLLNKVLDEFTTKVPATQWPVGETADLSYPYLDTLLSKYQDPAEADPLLKVQNELDETKIILHKTIESV 160 (198)
T ss_pred ecCcCchhHHHHHHHHHHHHHhhcCcccccCcCCCcCCCchhHHHHHHHhcChhhhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888888986556667899999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhccccC
Q psy130 162 LQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNSCCSL 198 (199)
Q Consensus 162 L~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~cc~~ 198 (199)
|+||||||+||+||++|+.+|+.|+++|||.|+||.|
T Consensus 161 L~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK~NsCC~i 197 (198)
T KOG0861|consen 161 LERGEKLDDLVSKSENLSLQSKMFYKSAKKTNSCCII 197 (198)
T ss_pred HHccchHHHHHHHHHhhhHHHHHHHHHHhhcCCceec
Confidence 9999999999999999999999999999999999987
No 2
>KOG0859|consensus
Probab=100.00 E-value=8.3e-42 Score=267.21 Aligned_cols=175 Identities=22% Similarity=0.338 Sum_probs=152.3
Q ss_pred eeEEEEEEEeCCCcceeeeeccCCCCcceeeechHHHHHHHHHHHHHhhcCCC--CceeEeeCceEEEEEEeCCCEEEEE
Q psy130 3 KLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTA--SRQSIKEGEYMCHVFVRGDNLAGIL 80 (199)
Q Consensus 3 kl~~~~v~~~~~~~~~~l~~~~d~~~~~~f~r~~~~e~~~~~s~~i~~~~~~~--~k~s~~~~~~~~h~~~~~~~i~~~~ 80 (199)
.|+..+|.|- .++|++-.+.+ |||..++ +++++|+|.+ .|.+|++|+|.|| |+.+||++|+|
T Consensus 2 ~iiYs~VARG----TvvLaeft~~~----------gNf~sva-~qiL~klp~~~n~k~tYs~d~y~Fh-~l~~dg~tylc 65 (217)
T KOG0859|consen 2 SIIYSFVARG----TVILAEFTEFS----------GNFSSIA-AQILQKLPSSSNSKFTYSCDGYTFH-YLVEDGLTYLC 65 (217)
T ss_pred ceeEEEEecc----eEEEEeeeecc----------CCHHHHH-HHHHHhCCCCCCCceEEecCCeEEE-EEEeCCeEEEE
Confidence 3444444443 55776655533 7888986 7899999864 5999999999999 68899999999
Q ss_pred EecCCCChHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCC--CC-ccHHHHHHhcCCchhhhHHHHHHHhHHHHHHHHHhh
Q psy130 81 VSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASI--SF-PQLPQYLARYQNPREADAMTKIQEELDETKIILHNT 157 (199)
Q Consensus 81 itd~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~--~f-~~l~~l~~~y~~~~~~dkl~~i~~~v~evk~iM~~N 157 (199)
|+|.++++++||.||++|+++|.+.|+.. ..++.++++ +| +.|++.|++|.+.++.|+|.+++.||+|||+||++|
T Consensus 66 vadds~gR~ipfaFLe~Ik~~F~k~YG~~-a~ta~AysmN~EFs~vL~qqm~y~s~~p~id~lskvkaqv~evk~vM~eN 144 (217)
T KOG0859|consen 66 VADDSAGRQIPFAFLERIKEDFKKRYGGG-AHTAVAYSMNKEFSSVLKQQMQYCSEHPEISKLAKVKAQVTEVKGVMMEN 144 (217)
T ss_pred EEeccccccccHHHHHHHHHHHHHHhccc-hhHHHHhHhHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999864 345567777 78 889999999976666999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q psy130 158 IEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNS 194 (199)
Q Consensus 158 IdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~ 194 (199)
||++|+|||+||.|||||++|+.+|..|++++|+++|
T Consensus 145 IekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r 181 (217)
T KOG0859|consen 145 IEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRR 181 (217)
T ss_pred HHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987
No 3
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.6e-34 Score=227.03 Aligned_cols=188 Identities=33% Similarity=0.537 Sum_probs=167.6
Q ss_pred eEEEEEEEeCCCcceeeeeccCCCCcceeeechHHHHHHHHHHHHHhhcCCCCceeEeeCceEEEEEEeCCCEEEEEEec
Q psy130 4 LFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSIKEGEYMCHVFVRGDNLAGILVSD 83 (199)
Q Consensus 4 l~~~~v~~~~~~~~~~l~~~~d~~~~~~f~r~~~~e~~~~~s~~i~~~~~~~~k~s~~~~~~~~h~~~~~~~i~~~~itd 83 (199)
|+++.++|...++...++.++++++++||+|+.++++..++++++.. +.+++.++|.||++..++|++|+|+|+
T Consensus 1 i~s~~~~~~~~~~~~~~~~~~s~~~~~ff~~~~v~~~l~~~~~~~a~------~~~ies~~~~~~~~~~s~gi~y~~~~~ 74 (190)
T COG5143 1 IASISLFRVKGEPLRTLSDAESLSSFSFFHRSKVKEVLRFLSKTSAS------RASIESGDYFFHYLKMSSGIVYVPISD 74 (190)
T ss_pred CceEEEEeecCCcceeeccccccCcccccccchHHHHHHHhcccccc------hhccccCceEEEEEecCCCceeEEecc
Confidence 34566667666667899999999999999999999999999887654 788999999999877777999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCCCCccHHHHHHh-cCCchhhhHHHHHHHhHHHHHHHHHhhHHHHH
Q psy130 84 QEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISFPQLPQYLAR-YQNPREADAMTKIQEELDETKIILHNTIEAVL 162 (199)
Q Consensus 84 ~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~f~~l~~l~~~-y~~~~~~dkl~~i~~~v~evk~iM~~NIdkiL 162 (199)
++||.++||+.++++..+|....+..+|... ..++.|.+++..+++ |++|...|++.+++.+++|||.+|++||+++|
T Consensus 75 ~e~p~~la~~~~~~~~~~~~~s~~~~~~~d~-~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l 153 (190)
T COG5143 75 KEYPNKLAYGYLNSIATEFLKSSALEQLIDD-TVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKVL 153 (190)
T ss_pred cccchhhhhHHHHhhccHhhhhhhHhhcccC-ccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887765554432 334567889999999 99999999999999999999999999999999
Q ss_pred HhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhccccC
Q psy130 163 QRGEKLDDLVSKSEGLSMQSKAFYKTARKTNSCCSL 198 (199)
Q Consensus 163 ~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~cc~~ 198 (199)
.|||+|+.|+++|+.|..+|+.|+++|++.|.||-+
T Consensus 154 ~R~ekl~~lv~~ss~L~~~s~~~~k~akk~n~~~~~ 189 (190)
T COG5143 154 YRDEKLDLLVDLSSILLLSSKMFPKSAKKSNLCCLI 189 (190)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhee
Confidence 999999999999999999999999999999999965
No 4
>KOG0862|consensus
Probab=99.97 E-value=1.7e-30 Score=207.12 Aligned_cols=183 Identities=26% Similarity=0.437 Sum_probs=154.1
Q ss_pred CceeEEEEEEEeCCCcceeeeeccCCCCcceeeechH-HHHHHHHHHHHHhhcCC--CCceeEeeCceEEEEEEeCCCEE
Q psy130 1 MVKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSV-QEFMTFVSKTMVERSQT--ASRQSIKEGEYMCHVFVRGDNLA 77 (199)
Q Consensus 1 ~~kl~~~~v~~~~~~~~~~l~~~~d~~~~~~f~r~~~-~e~~~~~s~~i~~~~~~--~~k~s~~~~~~~~h~~~~~~~i~ 77 (199)
|+++..++.|+. ++.|+.++|- ..+.+.. .++-+-+ +.|++++.+ .+|+|++.|.|.|| |+.++|+|
T Consensus 1 mi~~T~I~RV~D----GLPLa~s~d~----~e~~~~s~~e~r~q~-K~L~kkLs~~s~~r~Sietg~f~fH-fli~~~Vc 70 (216)
T KOG0862|consen 1 MILLTLIARVRD----GLPLAASTDD----NEQSGDSLLEYRQQA-KSLFKKLSQQSPTRCSIETGPFVFH-FLIESGVC 70 (216)
T ss_pred CceeEEEEEecC----CcccccccCc----ccCCCchHHHHHHHH-HHHHHhccCCCCcccccccCCeEEE-EEecCCEE
Confidence 677776666554 5578888873 1222222 5666654 888888865 58999999999999 78899999
Q ss_pred EEEEecCCCChHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCCCCccHHHHHH----hcCCchhhhHHHHHHHhHHHHHHH
Q psy130 78 GILVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISFPQLPQYLA----RYQNPREADAMTKIQEELDETKII 153 (199)
Q Consensus 78 ~~~itd~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~f~~l~~l~~----~y~~~~~~dkl~~i~~~v~evk~i 153 (199)
|+|+||..||+++||.||+++.++|...|+... .+...+|+.|.+++..|+ +|+|++..+++.++..++.+|+.|
T Consensus 71 ylvicd~~yP~kLAF~YLedL~~EF~~~~~~~~-~~~~~RPY~FieFD~~IQk~Kk~ynd~r~~~n~~~~n~el~~v~~i 149 (216)
T KOG0862|consen 71 YLVICDKSYPRKLAFSYLEDLAQEFDKSYGKNI-IQPASRPYAFIEFDTFIQKTKKRYNDTRSQRNLLKLNQELQDVQRI 149 (216)
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHHHHhccccc-CCccCCCeeEEehhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998543 333578887766666664 499999899999999999999999
Q ss_pred HHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q psy130 154 LHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNS 194 (199)
Q Consensus 154 M~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~ 194 (199)
|.+||+++|.|||.|+.|.+.+.+|+..|+..+++|+.+|+
T Consensus 150 m~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~ 190 (216)
T KOG0862|consen 150 MVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINR 190 (216)
T ss_pred HHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999885
No 5
>KOG0860|consensus
Probab=99.74 E-value=5e-18 Score=123.48 Aligned_cols=59 Identities=36% Similarity=0.531 Sum_probs=57.4
Q ss_pred hhhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q psy130 136 EADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNS 194 (199)
Q Consensus 136 ~~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~ 194 (199)
..+++.++|.||+||++||.+||+|+|||||||++|++||++|+..|..|+++|.+++|
T Consensus 27 ~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkr 85 (116)
T KOG0860|consen 27 ANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKR 85 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999987
No 6
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=99.73 E-value=4.6e-17 Score=113.71 Aligned_cols=77 Identities=23% Similarity=0.491 Sum_probs=63.7
Q ss_pred HHHHHhhcC-CC-CceeEeeCceEEEEEEeCCCEEEEEEecCCCChHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCCCCc
Q psy130 45 SKTMVERSQ-TA-SRQSIKEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISFP 122 (199)
Q Consensus 45 s~~i~~~~~-~~-~k~s~~~~~~~~h~~~~~~~i~~~~itd~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~f~ 122 (199)
||+|+++++ ++ +|.+++.|+|.||+ +.+||++|+|+||++||.|+||.||++|+++|..+|+...+..+. +++|.
T Consensus 2 a~~il~~i~~~~~~k~s~~~~~~~fh~-~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~~a~--~~~~~ 78 (83)
T PF13774_consen 2 ARKILKRIPPNGNSKMSYESGNYVFHY-LVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIKSAS--PYSFK 78 (83)
T ss_dssp HHHHHHTS-TTSESEEEEEETTEEEEE-EEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTTTST--TTTTH
T ss_pred HHHHHHhcCCCCCCeEEEEECCEEEEE-EEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhcccC--Ccchh
Confidence 689999998 45 79999999999995 559999999999999999999999999999999999855555543 55554
Q ss_pred cH
Q psy130 123 QL 124 (199)
Q Consensus 123 ~l 124 (199)
.+
T Consensus 79 ~F 80 (83)
T PF13774_consen 79 EF 80 (83)
T ss_dssp HH
T ss_pred hc
Confidence 44
No 7
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.71 E-value=2e-17 Score=117.11 Aligned_cols=60 Identities=40% Similarity=0.618 Sum_probs=57.9
Q ss_pred hhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhc--cc
Q psy130 137 ADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNS--CC 196 (199)
Q Consensus 137 ~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~--cc 196 (199)
.|++.+++++|++|+++|.+||+++|+|||+||+|++||++|+.+|..|+++|+++++ ||
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~ 63 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWW 63 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999997 54
No 8
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=95.57 E-value=0.53 Score=35.93 Aligned_cols=98 Identities=15% Similarity=0.268 Sum_probs=55.1
Q ss_pred eEEEEEEEeCCCcceeeeeccCCCCcceeeechHHHH-----HHHHHHHHHhhcCC----------CCceeEeeCceEEE
Q psy130 4 LFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEF-----MTFVSKTMVERSQT----------ASRQSIKEGEYMCH 68 (199)
Q Consensus 4 l~~~~v~~~~~~~~~~l~~~~d~~~~~~f~r~~~~e~-----~~~~s~~i~~~~~~----------~~k~s~~~~~~~~h 68 (199)
+|++.|+..+. .++...++.-..-+-=.+-..-+. .-+.-+.++.++.| +...+++.+.|..|
T Consensus 1 IyslyI~nr~G--~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh 78 (142)
T PF04099_consen 1 IYSLYIFNRSG--GLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLH 78 (142)
T ss_dssp EEEEEEE-TTS---EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEE
T ss_pred CeEEEEEeCCc--ceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEE
Confidence 57888887663 567777766543110001111111 12234566666654 24567889999999
Q ss_pred EEEeCCCEEEEEEecCCCChHHHHHHHHHHHHHHhh
Q psy130 69 VFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSK 104 (199)
Q Consensus 69 ~~~~~~~i~~~~itd~~~p~~~af~fL~~i~~~f~~ 104 (199)
++-+..|+-|+++||+..+. ..-.+++.+.+.|..
T Consensus 79 ~~eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~d 113 (142)
T PF04099_consen 79 CFETPTGLKFVLITDPNVPS-LRDELLRIYYELYVD 113 (142)
T ss_dssp EEE-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHH
T ss_pred EEEcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHH
Confidence 99999999999999999963 334455656655554
No 9
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=94.45 E-value=0.039 Score=44.08 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=48.8
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhh
Q psy130 139 AMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARK 191 (199)
Q Consensus 139 kl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akk 191 (199)
+...++..++.++++|..|+|++++||++...+.|+.++|..+.+.|++-+-+
T Consensus 95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k 147 (190)
T COG5143 95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNK 147 (190)
T ss_pred hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999999999999999999999999999999999987654
No 10
>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []. Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.
Probab=93.30 E-value=0.21 Score=37.66 Aligned_cols=59 Identities=12% Similarity=0.292 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhcCC--C---CceeEe-eCceEEEEEEe---CCCEEEEEEecCCCChHHHHHHHHHHHH
Q psy130 41 MTFVSKTMVERSQT--A---SRQSIK-EGEYMCHVFVR---GDNLAGILVSDQEYPHRVAHTLITNVLN 100 (199)
Q Consensus 41 ~~~~s~~i~~~~~~--~---~k~s~~-~~~~~~h~~~~---~~~i~~~~itd~~~p~~~af~fL~~i~~ 100 (199)
-+.+-..+++++-| + +|++.. .|+|-++ |.. +++-+++|++..+.|+-+|...|.|++.
T Consensus 43 H~Li~dmVlPkVV~v~GNKVTK~S~~lIDGyDCY-YTT~~~d~~~vlVCFt~~~vPKILPiRlLSeLK~ 110 (141)
T PF09426_consen 43 HKLIHDMVLPKVVPVEGNKVTKMSMHLIDGYDCY-YTTEDNDDNKVLVCFTRVDVPKILPIRLLSELKG 110 (141)
T ss_dssp HHHHHHTTGGG----SS-SSEE--S--SSSEEEE-E---SS-TTEEEEEEEETTS-SSHHHHHHHHHTT
T ss_pred HHHHhhccccceEEccCCeEEEEEeeccccccee-eecccCCCCeEEEEEEecCCcceecHHHHHhhcc
Confidence 33343445555432 3 455555 6999999 555 5669999999999999999999999873
No 11
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=80.97 E-value=3.9 Score=34.36 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=42.7
Q ss_pred CceeEeeCceEEEEEEeCC--CEEEEEEecCCCChHHHHHHHHHHHHHHhhcCCCCCCCCC-C----cCCCCC-ccHHHH
Q psy130 56 SRQSIKEGEYMCHVFVRGD--NLAGILVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTG-T----EASISF-PQLPQY 127 (199)
Q Consensus 56 ~k~s~~~~~~~~h~~~~~~--~i~~~~itd~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~-~----~~~~~f-~~l~~l 127 (199)
.-.+|.+++|..+ |.-.| +++||+|-..-....-+=.||+.|+..|...|+.. +... . .....| ..+..+
T Consensus 18 ~~~~~~~d~y~lk-w~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~-l~~~~~~~~~~~~~~Fd~~F~~~ 95 (279)
T PF04086_consen 18 GNSSFTYDNYTLK-WTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQ-LKQLKPNTSINEYFDFDEEFDQL 95 (279)
T ss_dssp ----------EEE-EEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHH-HHSSSTHHHHT-----HHHHHHH
T ss_pred CCCceeEcCEEEE-EEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHH-hhccccccccccchhHHHHHHHH
Confidence 4566899999988 44444 49999999988888888889999999999999642 1110 0 112267 678888
Q ss_pred HHhc
Q psy130 128 LARY 131 (199)
Q Consensus 128 ~~~y 131 (199)
+...
T Consensus 96 l~~~ 99 (279)
T PF04086_consen 96 LKEL 99 (279)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 12
>KOG3369|consensus
Probab=80.76 E-value=9.5 Score=30.25 Aligned_cols=46 Identities=11% Similarity=0.254 Sum_probs=38.3
Q ss_pred ceeEeeCceEEEEEEeCCCEEEEEEecCCCChHHHHHHHHHHHHHHhh
Q psy130 57 RQSIKEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSK 104 (199)
Q Consensus 57 k~s~~~~~~~~h~~~~~~~i~~~~itd~~~p~~~af~fL~~i~~~f~~ 104 (199)
....+.+.|..|+|-.-.|+-|++++++..+ .|=.+|+.+...|..
T Consensus 123 ie~LetdtF~l~~~QTlTG~KFVvis~~~~~--~aD~lLrKiYelYsD 168 (199)
T KOG3369|consen 123 IEVLETDTFTLHIFQTLTGTKFVVIAEPGTQ--GADSLLRKIYELYSD 168 (199)
T ss_pred eEEEEeccEEEEEEEccCCcEEEEEecCCch--hHHHHHHHHHHHHHH
Confidence 3556789999999999999999999999874 577789888877755
No 13
>KOG1983|consensus
Probab=80.26 E-value=1.3 Score=44.23 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=33.4
Q ss_pred HhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhh
Q psy130 155 HNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKT 192 (199)
Q Consensus 155 ~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl 192 (199)
..--+.+.+|||+|+.++++|++|++++++|-..|.++
T Consensus 944 ~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~ 981 (993)
T KOG1983|consen 944 SGALQPLNERGERLSRLEERTAEMANSAKQFSSTAHEL 981 (993)
T ss_pred hhcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHH
Confidence 33456689999999999999999999999999999875
No 14
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=80.22 E-value=9.9 Score=30.03 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=44.0
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKT 188 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~ 188 (199)
.-...+..+|++++.-|.+.|+++=..=++||.+..++..|...+..+...
T Consensus 109 ~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~e 159 (171)
T PF04799_consen 109 STFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESE 159 (171)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999999999999999998888887766543
No 15
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=77.53 E-value=10 Score=28.24 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=32.8
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHH-HHHHHHHhhhhhcc
Q psy130 140 MTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQ-SKAFYKTARKTNSC 195 (199)
Q Consensus 140 l~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~-s~~F~k~akkl~~c 195 (199)
|+++..+|.++.+-|.+-.+++-.==++++....+++.|..- |+....-+.++..|
T Consensus 1 l~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdkC 57 (121)
T PF03310_consen 1 LATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDKC 57 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 355667777776666555444444446667777766666655 55666666677776
No 16
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=76.07 E-value=29 Score=25.62 Aligned_cols=50 Identities=8% Similarity=0.209 Sum_probs=35.7
Q ss_pred CCCCceeEeeCceEEEEEEeCCCEEEEEEecCCCChHHHHHHHHHHHHHHhh
Q psy130 53 QTASRQSIKEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSK 104 (199)
Q Consensus 53 ~~~~k~s~~~~~~~~h~~~~~~~i~~~~itd~~~p~~~af~fL~~i~~~f~~ 104 (199)
.+..+..+..+++..|+|-.-.|.-|+.++++. +...+|+ |+.+...|..
T Consensus 55 gssg~~~l~~~~f~m~I~qT~TG~kFV~~~~k~-t~na~~q-l~kiY~lYsd 104 (134)
T COG5122 55 GSSGRLVLYFRNFVMTIFQTTTGTKFVFVAEKR-TVNALFQ-LQKIYSLYSD 104 (134)
T ss_pred CCCceEEEEeccEEEEEEEecCCcEEEEEecCC-chhHHHH-HHHHHHHHHH
Confidence 345788888999999998888999999999443 3445555 5555555443
No 17
>KOG3368|consensus
Probab=72.78 E-value=39 Score=25.59 Aligned_cols=95 Identities=14% Similarity=0.221 Sum_probs=62.6
Q ss_pred ceeEEEEEEEeCCCcceeeeeccCCCCcceeeechHHHH---HHHHHHHHHhhcCC----CCceeEeeCceEEEEEEeCC
Q psy130 2 VKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEF---MTFVSKTMVERSQT----ASRQSIKEGEYMCHVFVRGD 74 (199)
Q Consensus 2 ~kl~~~~v~~~~~~~~~~l~~~~d~~~~~~f~r~~~~e~---~~~~s~~i~~~~~~----~~k~s~~~~~~~~h~~~~~~ 74 (199)
|-||++.|+-.+. .++...+...+.-+--.+...... .-|+-|.+.+|+.| ++..++..+.|..|+|-...
T Consensus 1 Mtiy~~yIFdR~g--~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~d~k~~f~sy~Ts~YklhfyeTpt 78 (140)
T KOG3368|consen 1 MTIYNFYIFDRNG--VCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPGDVKDGFLSYKTSKYKLHFYETPT 78 (140)
T ss_pred CeEEEEEEEcCCc--cEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCCCcccCeeEEeeceeEEEEEEcCC
Confidence 6788888876653 456655555443321111110000 35667888888865 35678889999999888899
Q ss_pred CEEEEEEecCCCChHHHHHHHHHHHH
Q psy130 75 NLAGILVSDQEYPHRVAHTLITNVLN 100 (199)
Q Consensus 75 ~i~~~~itd~~~p~~~af~fL~~i~~ 100 (199)
|+-++-+||+.... .-..|+.|..
T Consensus 79 glk~vl~Tdpk~~~--ir~vLq~IYs 102 (140)
T KOG3368|consen 79 GLKFVLNTDPKAGS--IRDVLQYIYS 102 (140)
T ss_pred CcEEEEecCCCccc--HHHHHHHHHH
Confidence 99999999998764 3446666666
No 18
>KOG0810|consensus
Probab=72.64 E-value=16 Score=31.50 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=43.2
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhH----------HHHHHHHHHHHHHhhhhhccccC
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKS----------EGLSMQSKAFYKTARKTNSCCSL 198 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS----------~~L~~~s~~F~k~akkl~~cc~~ 198 (199)
+.+.+++..|.|++++-.+==--|-..||-+|.++..- .+=-..|..++++|||.+.||.|
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii 276 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIII 276 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeeh
Confidence 67888889999998887766666667777777665432 33334567888999998876643
No 19
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=68.36 E-value=30 Score=24.05 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=34.1
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhh
Q psy130 142 KIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTAR 190 (199)
Q Consensus 142 ~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~ak 190 (199)
.+-+.+..++..|.+.+++- ...++.|.+.|+.|......|....-
T Consensus 5 ~vT~~L~rt~~~m~~ev~~s---~~t~~~L~~Ss~~L~~~~~e~~~~~~ 50 (92)
T PF03908_consen 5 DVTESLRRTRQMMAQEVERS---ELTLQTLEESSATLRSTNDEYDGQSS 50 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 46667788888888876654 56788888888888888777765543
No 20
>KOG0938|consensus
Probab=67.83 E-value=26 Score=30.80 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=43.2
Q ss_pred CCCceeE-eeCceEEEEEEeCCCEEEEEEecCCCChHHHHHHHHHHHHHHhhcCC
Q psy130 54 TASRQSI-KEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVP 107 (199)
Q Consensus 54 ~~~k~s~-~~~~~~~h~~~~~~~i~~~~itd~~~p~~~af~fL~~i~~~f~~~~~ 107 (199)
.+.|..+ +.|+-.|| ++..+++-.++||.......+.|.||.++.+.+..-++
T Consensus 40 ~d~r~PV~~igsttf~-~~r~~nl~lvaitksN~Nva~v~eFl~kl~avm~aYfg 93 (446)
T KOG0938|consen 40 LDVRSPVLTIGSTTFH-HIRSSNLWLVAITKSNANVAAVFEFLYKLDAVMNAYFG 93 (446)
T ss_pred cccCCCeeEecceeEE-EEeeccEEEEEEecCCCchhhHHHHHHHHHHHHHHHhc
Confidence 3445544 57888999 78888899999999999999999999999888876454
No 21
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=65.60 E-value=41 Score=23.01 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=42.9
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhh
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTAR 190 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~ak 190 (199)
+.+..+++.+.+--+-+.++=+++=+=.++-+.|.+.|+....+|+..+++..
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~ 62 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMW 62 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 57777788887777777777777777777888899999999999999888764
No 22
>KOG0811|consensus
Probab=63.33 E-value=32 Score=29.15 Aligned_cols=45 Identities=18% Similarity=0.336 Sum_probs=37.4
Q ss_pred hhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHH
Q psy130 137 ADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQ 181 (199)
Q Consensus 137 ~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~ 181 (199)
...+.+++.+|-||.+|+.+==.-|=+-|+.+|.+++.-++.+..
T Consensus 179 ~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~n 223 (269)
T KOG0811|consen 179 EQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVN 223 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Confidence 368999999999999999987777888898999888776666543
No 23
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=62.95 E-value=52 Score=27.38 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=22.3
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHH
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQS 182 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s 182 (199)
+++..++.-+++..+...+--+.--.+...|+++..|-+.++..-
T Consensus 192 ~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~ 236 (264)
T PF06008_consen 192 AKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQ 236 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555554444444444444555555555555544443
No 24
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=60.36 E-value=68 Score=23.82 Aligned_cols=49 Identities=10% Similarity=0.165 Sum_probs=39.6
Q ss_pred eeEeeCceEEEEEEeCCCEEEEEEecCCCChHHHHHHHHHHHHHHhhcCC
Q psy130 58 QSIKEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVP 107 (199)
Q Consensus 58 ~s~~~~~~~~h~~~~~~~i~~~~itd~~~p~~~af~fL~~i~~~f~~~~~ 107 (199)
-.+.++++.+- |...+++.++++++.+.+.-....||+.+.+.+..-++
T Consensus 48 ~i~~~~~~~~v-y~~~~dl~~~~v~~~~eNel~~~e~l~~~v~~l~~~~~ 96 (141)
T PF01217_consen 48 PIFEHDNYRIV-YKRYSDLYFVVVGDENENELLLLEFLHRLVEVLDDYFG 96 (141)
T ss_dssp SEEEETTEEEE-EEEETTEEEEEEESSTSBHHHHHHHHHHHHHHHHHHHS
T ss_pred eeeecccceee-eEeeccEEEEEEeecccchHHHHHHHHHhhhhhhhhhc
Confidence 34567887765 67778999999999999999999999988877776444
No 25
>PHA03011 hypothetical protein; Provisional
Probab=49.08 E-value=51 Score=23.74 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=41.2
Q ss_pred cHHHHHHhcCCchhhhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHH
Q psy130 123 QLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGL 178 (199)
Q Consensus 123 ~l~~l~~~y~~~~~~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L 178 (199)
.+++++-+||.- .|...-+.+++.+...+..+|.|.+.-=...+|.|-+.-.++
T Consensus 65 ~ldeL~~qYN~L--~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 65 ILDELIAQYNEL--LDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 466777778754 377888889999999999999998887777777776655544
No 26
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=46.75 E-value=31 Score=29.90 Aligned_cols=51 Identities=31% Similarity=0.419 Sum_probs=32.1
Q ss_pred hhHHHHHHHhHHHHHHHHHhh---HHHHHHhhhhHHH--HH--------HhHHHHHHHHHHHHH
Q psy130 137 ADAMTKIQEELDETKIILHNT---IEAVLQRGEKLDD--LV--------SKSEGLSMQSKAFYK 187 (199)
Q Consensus 137 ~dkl~~i~~~v~evk~iM~~N---IdkiL~Rge~Le~--L~--------~kS~~L~~~s~~F~k 187 (199)
.|.|.+++.+++.||.+|..+ |.-+..|-|.|.. ++ .++.+|+.++-.|++
T Consensus 229 e~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~~qaAefq~ 292 (372)
T COG3524 229 EDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLSNQAAEFQR 292 (372)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHH
Confidence 368999999999999999332 3344444444432 11 233467777777765
No 27
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=46.58 E-value=79 Score=22.86 Aligned_cols=68 Identities=12% Similarity=0.271 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceeEe--eCceEE---EEEEeCCCEEEEEEecCCCChHHHHHHHHHHHHHHhhcCCC
Q psy130 36 SVQEFMTFVSKTMVERSQTASRQSIK--EGEYMC---HVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVPP 108 (199)
Q Consensus 36 ~~~e~~~~~s~~i~~~~~~~~k~s~~--~~~~~~---h~~~~~~~i~~~~itd~~~p~~~af~fL~~i~~~f~~~~~~ 108 (199)
+..||..|+.+.+.++.|.+ .|+- .|+|.- +....+..-+ +.+..++-|.. -.-|++|.+.|.+.|..
T Consensus 18 s~~ew~~Fld~~VTPRFpdG--lTv~Da~GqW~~~~~g~~~rE~Skv-v~i~~~~~~~~--~~~i~~Ir~~Yk~rF~Q 90 (104)
T PF12098_consen 18 SEAEWQAFLDDEVTPRFPDG--LTVLDAYGQWRDRATGRLIRERSKV-VIIVHPDTPAA--EARIEAIREAYKQRFQQ 90 (104)
T ss_pred CHHHHHHHHhCeeccCCCCC--ceEEeccceEecCCCCcEeecccEE-EEEEeCCChHH--HHHHHHHHHHHHHHhcc
Confidence 45799999999888888776 4443 333332 0012334333 44444445544 45799999999998863
No 28
>KOG3230|consensus
Probab=45.43 E-value=26 Score=28.39 Aligned_cols=36 Identities=17% Similarity=0.440 Sum_probs=24.0
Q ss_pred CccHHHHHHhcCCchhhhHHHHHHHhHHHHHHHHHhhHHHHHHhh
Q psy130 121 FPQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAVLQRG 165 (199)
Q Consensus 121 f~~l~~l~~~y~~~~~~dkl~~i~~~v~evk~iM~~NIdkiL~Rg 165 (199)
.|.+.++|.+|.. -...++-+.+.|.++||..|+..
T Consensus 118 lpq~qkIm~eFek---------Qse~Mdm~~Emm~daIDdal~~~ 153 (224)
T KOG3230|consen 118 LPQIQKIMQEFEK---------QSEIMDMKEEMMDDAIDDALGDD 153 (224)
T ss_pred hHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhccc
Confidence 3455555554432 23456778899999999999643
No 29
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=43.03 E-value=79 Score=19.48 Aligned_cols=51 Identities=18% Similarity=0.317 Sum_probs=37.9
Q ss_pred hhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH
Q psy130 137 ADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYK 187 (199)
Q Consensus 137 ~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k 187 (199)
.+.+..+...+.+++++..+==..|-+-|+.|+.+.+..+........-.+
T Consensus 11 ~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~ 61 (66)
T smart00397 11 DEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANK 61 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 368888999999999998765556666778899888877776665444333
No 30
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=39.67 E-value=1.2e+02 Score=24.11 Aligned_cols=55 Identities=24% Similarity=0.372 Sum_probs=35.9
Q ss_pred ccHHHHHHhcC----CchhhhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHH
Q psy130 122 PQLPQYLARYQ----NPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQ 181 (199)
Q Consensus 122 ~~l~~l~~~y~----~~~~~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~ 181 (199)
|.+.+++.+|. .|...+.+.+...+.+++-+.+.+++++-+++ .+.+...+|+.+
T Consensus 136 p~~~~l~~kY~~l~~~~~~~~~~~~~l~e~~~~L~~l~~~f~~~~~~-----l~~~d~~dl~~e 194 (199)
T PF10112_consen 136 PTAVKLLEKYAELESQPVKSEEIKQSLEEIEETLDTLNQAFEKDLDK-----LLEDDIMDLDTE 194 (199)
T ss_pred hHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhHHHHHHHH
Confidence 77888888883 34445677777777777777777777776663 344444444443
No 31
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=39.10 E-value=97 Score=19.33 Aligned_cols=44 Identities=16% Similarity=0.319 Sum_probs=33.9
Q ss_pred hhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHH
Q psy130 137 ADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSM 180 (199)
Q Consensus 137 ~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~ 180 (199)
.+.|..+...|.++++++.+==+.|-+-|+-|+.|.+..+.-..
T Consensus 3 d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~ 46 (63)
T PF05739_consen 3 DEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANE 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHH
Confidence 36788999999999998877666777778888888777665443
No 32
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=36.78 E-value=1.7e+02 Score=21.56 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=36.4
Q ss_pred eeEeeCceEEEEEEeCCCEEEEEEec---CCCChHHHHHHHHHHHHHHhhcC
Q psy130 58 QSIKEGEYMCHVFVRGDNLAGILVSD---QEYPHRVAHTLITNVLNEFSKAV 106 (199)
Q Consensus 58 ~s~~~~~~~~h~~~~~~~i~~~~itd---~~~p~~~af~fL~~i~~~f~~~~ 106 (199)
.....++|..+-|+...|+=++.+++ ........-.|++++.+.|.+..
T Consensus 55 ~l~~~~~~~vygyvT~t~~Kfvl~~~~~~~~~~d~~ik~fF~~vh~~Y~~~~ 106 (132)
T PF04628_consen 55 LLDPFEDYKVYGYVTNTGIKFVLVHDMSDNSIRDEDIKQFFKEVHELYVKAL 106 (132)
T ss_dssp EEEEETTEEEEEEETTT--EEEEEECGGG-S--HHHHHHHHHHHHHHHHHHH
T ss_pred ceehhhhHHHHhhhccCceeEEEEEecccCCcchHHHHHHHHHHHHHHHHHc
Confidence 34567999999999999999999888 56667778899999999988744
No 33
>PF13077 DUF3909: Protein of unknown function (DUF3909)
Probab=35.06 E-value=69 Score=22.34 Aligned_cols=37 Identities=11% Similarity=-0.005 Sum_probs=21.1
Q ss_pred EeeCceEEEEEEeCCCEEEEEEecCCCC--hHHHHHHHH
Q psy130 60 IKEGEYMCHVFVRGDNLAGILVSDQEYP--HRVAHTLIT 96 (199)
Q Consensus 60 ~~~~~~~~h~~~~~~~i~~~~itd~~~p--~~~af~fL~ 96 (199)
+..++...+....-+|++|+.++-.+-. -.-.|+||+
T Consensus 69 ydrdgi~lym~aeidg~~~vsvsy~edalhlqelfqfle 107 (108)
T PF13077_consen 69 YDRDGIDLYMHAEIDGVCYVSVSYSEDALHLQELFQFLE 107 (108)
T ss_pred ecccceeEEEEeeeccEEEEEEeechhhHHHHHHHHHhh
Confidence 4444444332234688999988755433 344677775
No 34
>PLN03223 Polycystin cation channel protein; Provisional
Probab=34.94 E-value=89 Score=32.66 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=39.6
Q ss_pred hhhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHH
Q psy130 136 EADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSM 180 (199)
Q Consensus 136 ~~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~ 180 (199)
+.|.|.+.++.+-+++.-+.++=-++++|+++|.++++|-.+|..
T Consensus 1579 e~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~ 1623 (1634)
T PLN03223 1579 EVDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLEN 1623 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 456788888899999999999999999999999999999887764
No 35
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=34.23 E-value=1.1e+02 Score=18.48 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=32.1
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHH-HhhhhHHHHHHhHHHHHHHHHH
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVL-QRGEKLDDLVSKSEGLSMQSKA 184 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL-~Rge~Le~L~~kS~~L~~~s~~ 184 (199)
+.+..+...|.+++++.. .|...+ +-|+.|+.+.+..+.....-+.
T Consensus 6 ~~l~~l~~~i~~l~~l~~-~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~ 52 (60)
T cd00193 6 EELEQLEASIGELKQIFL-DLGTEVEEQGELLDRIEDNVDNADVNVKR 52 (60)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999876 455444 4457788887766665555433
No 36
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=31.26 E-value=1.7e+02 Score=20.96 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=29.1
Q ss_pred HHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhh
Q psy130 143 IQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTAR 190 (199)
Q Consensus 143 i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~ak 190 (199)
++..+++++....++++.+ .++++.|..+-+.|...-...+++-+
T Consensus 61 v~~~~~e~~~~l~~r~e~i---e~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETL---ELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred heecHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777766 66677777777777666555555443
No 37
>smart00096 UTG Uteroglobin.
Probab=31.00 E-value=1.3e+02 Score=20.11 Aligned_cols=41 Identities=10% Similarity=0.106 Sum_probs=29.1
Q ss_pred cHHHHHHhcCCch-hhhHHHHHHHhHHHHHHHHHhhHHHHHH
Q psy130 123 QLPQYLARYQNPR-EADAMTKIQEELDETKIILHNTIEAVLQ 163 (199)
Q Consensus 123 ~l~~l~~~y~~~~-~~dkl~~i~~~v~evk~iM~~NIdkiL~ 163 (199)
.....+++|+.++ -.+...++++=+|....-=..||-++|+
T Consensus 20 ~Y~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~ 61 (69)
T smart00096 20 SYEASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTE 61 (69)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4677889998765 4577777887777766666666666665
No 38
>PHA03386 P10 fibrous body protein; Provisional
Probab=30.66 E-value=1.2e+02 Score=21.48 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=12.1
Q ss_pred hHHHHHHHhHHHHHHH
Q psy130 138 DAMTKIQEELDETKII 153 (199)
Q Consensus 138 dkl~~i~~~v~evk~i 153 (199)
+|+..+|.+|++++.-
T Consensus 19 ~KVdaLQ~qV~dv~~n 34 (94)
T PHA03386 19 TKVDALQTQLNGLEED 34 (94)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 6788888888888743
No 39
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=30.33 E-value=96 Score=19.66 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=8.5
Q ss_pred hhhhHHHHHHhHHHHHHHH
Q psy130 164 RGEKLDDLVSKSEGLSMQS 182 (199)
Q Consensus 164 Rge~Le~L~~kS~~L~~~s 182 (199)
=|.|||+|+..-.+|..+|
T Consensus 33 M~~RIDdLE~si~dl~~qa 51 (54)
T PF06825_consen 33 MSSRIDDLEKSIADLMTQA 51 (54)
T ss_dssp HHHHHHCCHHHH-------
T ss_pred HHhhHHHHHHHHHHHHHhc
Confidence 3667777777777766655
No 40
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=30.24 E-value=1.2e+02 Score=23.95 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=51.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCCCC-ccHHHHHHhcCCchhhhHHHHHHHhHHHHHHHHH
Q psy130 77 AGILVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISF-PQLPQYLARYQNPREADAMTKIQEELDETKIILH 155 (199)
Q Consensus 77 ~~~~itd~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~f-~~l~~l~~~y~~~~~~dkl~~i~~~v~evk~iM~ 155 (199)
+|.|++-+-| ......||+.+..++.+...+..-.....-.+.| ..++..++--+.+...| -+.++-.+|.
T Consensus 65 IF~~L~~~l~-~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~-------~vk~L~~~mv 136 (174)
T PF04510_consen 65 IFICLPMPLY-GEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVD-------LVKELLPKMV 136 (174)
T ss_pred HHHhCCchhh-hhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHH-------HHHHHHHHHH
Confidence 3556654433 3345567777777777655422100000011233 23343343333333222 3445556699
Q ss_pred hhHHHHHHhhhhHHHHHHhHHHHH
Q psy130 156 NTIEAVLQRGEKLDDLVSKSEGLS 179 (199)
Q Consensus 156 ~NIdkiL~Rge~Le~L~~kS~~L~ 179 (199)
+.+.++++||...+-++.-=+++.
T Consensus 137 ~Sv~elV~~g~E~~~l~rgl~~~e 160 (174)
T PF04510_consen 137 KSVKELVERGMEVGFLRRGLRDFE 160 (174)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999888877666654
No 41
>KOG2196|consensus
Probab=29.98 E-value=1.5e+02 Score=24.82 Aligned_cols=79 Identities=15% Similarity=0.279 Sum_probs=53.1
Q ss_pred CCCChHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCCCCccHHHHHHhcCCc-----hhhhHHHHHHHhHHHHH---HHHH
Q psy130 84 QEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISFPQLPQYLARYQNP-----READAMTKIQEELDETK---IILH 155 (199)
Q Consensus 84 ~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~f~~l~~l~~~y~~~-----~~~dkl~~i~~~v~evk---~iM~ 155 (199)
..-|..+-|.=|+++...|...+.... ..|.+++.+-|.. .+..+|..+-+++++|+ +.+.
T Consensus 65 ~~~~s~l~~~~LeeliNkWs~el~~Qe-----------~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLd 133 (254)
T KOG2196|consen 65 EPAPSSLTYKTLEELINKWSLELEEQE-----------RVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLD 133 (254)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHH
Confidence 345667788889999988876553211 1345555554432 23468888888888886 5678
Q ss_pred hhHHHHHHhhhhHHHHHH
Q psy130 156 NTIEAVLQRGEKLDDLVS 173 (199)
Q Consensus 156 ~NIdkiL~Rge~Le~L~~ 173 (199)
++++-|+.-...||.+.+
T Consensus 134 q~L~~I~sqQ~ELE~~L~ 151 (254)
T KOG2196|consen 134 QELEFILSQQQELEDLLD 151 (254)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888777776554
No 42
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=29.84 E-value=2.3e+02 Score=23.53 Aligned_cols=53 Identities=4% Similarity=0.139 Sum_probs=36.1
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhh
Q psy130 139 AMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARK 191 (199)
Q Consensus 139 kl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akk 191 (199)
.+..+..+++..+.-...+..+.-......+.+..++.+|.............
T Consensus 53 ~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~ 105 (264)
T PF06008_consen 53 ELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQE 105 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666666666777777777777777776666544
No 43
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=29.31 E-value=93 Score=20.22 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=29.2
Q ss_pred ccHHHHHHhcCCch-hhhHHHHHHHhHHHHHHHHHhhHHHHHHh
Q psy130 122 PQLPQYLARYQNPR-EADAMTKIQEELDETKIILHNTIEAVLQR 164 (199)
Q Consensus 122 ~~l~~l~~~y~~~~-~~dkl~~i~~~v~evk~iM~~NIdkiL~R 164 (199)
...+..+++|+.|+ ......++++=++..-.-=..||.++|+.
T Consensus 17 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~~ 60 (67)
T PF01099_consen 17 EEYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLEK 60 (67)
T ss_dssp HHHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46788899998754 45778888888887777777777777753
No 44
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=29.11 E-value=2.5e+02 Score=21.15 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=42.5
Q ss_pred hhHHHHHHHhHHHHHHHHHhhHHHHHHh-hhhHHHHHHhHHHHHHHHHHHHHH
Q psy130 137 ADAMTKIQEELDETKIILHNTIEAVLQR-GEKLDDLVSKSEGLSMQSKAFYKT 188 (199)
Q Consensus 137 ~dkl~~i~~~v~evk~iM~~NIdkiL~R-ge~Le~L~~kS~~L~~~s~~F~k~ 188 (199)
..+|..++.+++++...|.+.|+.+=++ .+.+..|..+.+.|...-..|...
T Consensus 9 l~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e~ 61 (149)
T PF07352_consen 9 LRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAEA 61 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999988665 556788888888888877776543
No 45
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.07 E-value=1.8e+02 Score=19.51 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=41.2
Q ss_pred hhhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhh
Q psy130 136 EADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARK 191 (199)
Q Consensus 136 ~~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akk 191 (199)
..|.|+-+|-+|+|.|+-=..=-+.+-+-.+..+.|+...+.|+..-...+..-|.
T Consensus 16 AvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 16 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999988654444455555677788888888888877666655443
No 46
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=28.43 E-value=78 Score=25.37 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=47.7
Q ss_pred cCCCChHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCCCCccHHHHHHhcCCchhhhHHHHHHHhHHHHHHHHHhhHHHHH
Q psy130 83 DQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISFPQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAVL 162 (199)
Q Consensus 83 d~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~f~~l~~l~~~y~~~~~~dkl~~i~~~v~evk~iM~~NIdkiL 162 (199)
+-+|.+..--..|.|.++...+....- + .+. +...++....+|.+|.=-+.+-.-+.+..+.-.-+.+-++++|
T Consensus 108 ~fTfD~~~L~~~L~ec~~~L~~lv~~H-L---T~K--S~~Ri~~vF~~f~~~efL~~lf~~~~~~~~~L~~i~~~Lnkll 181 (186)
T PF05527_consen 108 DFTFDRNYLSKLLKECRDLLHQLVEPH-L---TPK--SHGRIDHVFNFFSDPEFLDALFSPDEEYRDHLGKICDGLNKLL 181 (186)
T ss_dssp TS---HHHHHHHHHHHHHHHHHHHTTT-S----HH--HHHHHHHHHHHHT-HHHHHHHTSG--GGHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHh-C---Chh--hHHHHHHHHHhhCChHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence 445556667777788777766543211 0 011 1246788888888886556666556677777778899999999
Q ss_pred Hhhh
Q psy130 163 QRGE 166 (199)
Q Consensus 163 ~Rge 166 (199)
++|+
T Consensus 182 d~g~ 185 (186)
T PF05527_consen 182 DEGS 185 (186)
T ss_dssp HTT-
T ss_pred hCCC
Confidence 9985
No 47
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=28.22 E-value=74 Score=21.18 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=8.1
Q ss_pred HHHHHHHhhHHH
Q psy130 149 ETKIILHNTIEA 160 (199)
Q Consensus 149 evk~iM~~NIdk 160 (199)
+.+.||.+||..
T Consensus 10 ~L~~ii~~~~~~ 21 (76)
T PF04155_consen 10 ELRKIILKNMKE 21 (76)
T ss_pred HHHHHHHHHhcc
Confidence 466777777765
No 48
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=28.11 E-value=62 Score=18.66 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=13.9
Q ss_pred HHHHHHHhhHHHHHHhhhh
Q psy130 149 ETKIILHNTIEAVLQRGEK 167 (199)
Q Consensus 149 evk~iM~~NIdkiL~Rge~ 167 (199)
--++-....||..|++|++
T Consensus 9 ~~~~~L~~~ID~ALd~~D~ 27 (37)
T PF08858_consen 9 FRKEQLLELIDEALDNRDK 27 (37)
T ss_dssp HHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHHcCCH
Confidence 3455677889999999886
No 49
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=27.82 E-value=1.3e+02 Score=21.54 Aligned_cols=38 Identities=16% Similarity=0.368 Sum_probs=25.9
Q ss_pred HHHHHHhcCCchhhhHHHHHHHhHHHHHHHHHhhHHHHHHh
Q psy130 124 LPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAVLQR 164 (199)
Q Consensus 124 l~~l~~~y~~~~~~dkl~~i~~~v~evk~iM~~NIdkiL~R 164 (199)
+.....+|+ -.+.+..-..++..-+.-+.+|+..++.+
T Consensus 25 l~~Wa~~~~---v~~~~~~f~~~~~~~~~~~~~~~~~vi~~ 62 (113)
T PF02520_consen 25 LDEWAEKYG---VQDQYNEFKAQVQAQKEEVRKNVTAVISN 62 (113)
T ss_pred HHHHHHHCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444454 24677778888887788888888777765
No 50
>KOG3065|consensus
Probab=27.70 E-value=2.4e+02 Score=24.01 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=51.8
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhccccC
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNSCCSL 198 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~cc~~ 198 (199)
+.....-.-.+|.+..-..++..+-+-||.|+-.+...+.+....+.=.+....++.||.+
T Consensus 79 ~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~~~g~ 139 (273)
T KOG3065|consen 79 KSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKGLFGL 139 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 4444455556777888888999999999999999999999999999999999999999963
No 51
>KOG3003|consensus
Probab=27.42 E-value=3.3e+02 Score=22.70 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=34.9
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHh
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTA 189 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~a 189 (199)
..+..+...+..-+++ .+--|+++.-=-..++|.+++....+.|+.|..|+
T Consensus 71 ae~~~l~~~~k~~~e~-~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ~ 121 (236)
T KOG3003|consen 71 AEKALLEKVLKLEKEE-QELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQS 121 (236)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666 56666775555567778888888888888877665
No 52
>KOG2740|consensus
Probab=26.06 E-value=1.4e+02 Score=26.63 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=31.1
Q ss_pred EeCCCEEEEEEecCCCChHHHHHHHHHHHHHHhhcCC
Q psy130 71 VRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVP 107 (199)
Q Consensus 71 ~~~~~i~~~~itd~~~p~~~af~fL~~i~~~f~~~~~ 107 (199)
+..+++.+++++..+.|-=.++.||..|.+-|..-|+
T Consensus 60 v~~~~i~~~~~st~e~pPL~~iefL~rv~dv~~eyFg 96 (418)
T KOG2740|consen 60 VYRDLIFFCAVSTVETPPLMVIEFLHRVVDVLLEYFG 96 (418)
T ss_pred eeccCcEEEEEEeccCCChhHHHHHHHHHHHHHHHhc
Confidence 3467888888888899988899999999998887555
No 53
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=25.78 E-value=1.3e+02 Score=17.87 Aligned_cols=26 Identities=12% Similarity=0.317 Sum_probs=19.2
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHhHH
Q psy130 151 KIILHNTIEAVLQRGEKLDDLVSKSE 176 (199)
Q Consensus 151 k~iM~~NIdkiL~Rge~Le~L~~kS~ 176 (199)
.+.+.+|-..+|...+-|+.+.++-+
T Consensus 9 eeLV~eNK~ell~d~~~me~Ieerie 34 (40)
T PF13040_consen 9 EELVRENKQELLNDKEAMEKIEERIE 34 (40)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 35667788888888888888777654
No 54
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=25.51 E-value=1.5e+02 Score=18.07 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=23.6
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHHhhh
Q psy130 140 MTKIQEELDETKIILHNTIEAVLQRGE 166 (199)
Q Consensus 140 l~~i~~~v~evk~iM~~NIdkiL~Rge 166 (199)
...|+.+|+.++.-|..+|+.+-.|=.
T Consensus 5 ~~~ie~dIe~tR~~La~tvd~L~~r~~ 31 (49)
T PF12277_consen 5 PDEIERDIERTRAELAETVDELAARLS 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 567999999999999999999887755
No 55
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=24.35 E-value=9 Score=18.75 Aligned_cols=9 Identities=33% Similarity=0.567 Sum_probs=5.7
Q ss_pred CceeEEEEE
Q psy130 1 MVKLFALNI 9 (199)
Q Consensus 1 ~~kl~~~~v 9 (199)
|||+..+.+
T Consensus 1 MMk~vIIlv 9 (19)
T PF13956_consen 1 MMKLVIILV 9 (19)
T ss_pred CceehHHHH
Confidence 777766544
No 56
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=24.00 E-value=57 Score=27.96 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=20.2
Q ss_pred CccHHHHHHhc----CCchhhhHHHHHHHhHHHHHHHHHhhHHH
Q psy130 121 FPQLPQYLARY----QNPREADAMTKIQEELDETKIILHNTIEA 160 (199)
Q Consensus 121 f~~l~~l~~~y----~~~~~~dkl~~i~~~v~evk~iM~~NIdk 160 (199)
|.++++.|++. .+....+...+++.++-|.=+-|.-|=..
T Consensus 82 f~e~~e~~~k~~~K~k~~~d~e~~~klEKel~e~~~~~fg~e~~ 125 (295)
T TIGR01478 82 YEQLQELVEKNRTKSTGGNGAEPMSTIEKELLEKYEEMFGDESH 125 (295)
T ss_pred HHHHHHHHHhcCCcccccCCcchhhHHHHHHHHHHHHHhCCccc
Confidence 45666666553 12222234455566666655555554444
No 57
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=23.88 E-value=2.1e+02 Score=26.84 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=43.3
Q ss_pred CchhhhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH
Q psy130 133 NPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKT 188 (199)
Q Consensus 133 ~~~~~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~ 188 (199)
+-++.+.+...++++++++.-=.+|..++.++-+.++.|....+......+.|++.
T Consensus 186 ~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~ 241 (555)
T TIGR03545 186 DLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKND 241 (555)
T ss_pred hcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43356899999999999998545677788899999998888887766666665544
No 58
>KOG1696|consensus
Probab=23.64 E-value=3.8e+02 Score=21.30 Aligned_cols=60 Identities=17% Similarity=0.289 Sum_probs=43.4
Q ss_pred cHHHHHHhcCCchhhhH------HHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHH
Q psy130 123 QLPQYLARYQNPREADA------MTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQS 182 (199)
Q Consensus 123 ~l~~l~~~y~~~~~~dk------l~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s 182 (199)
.|..++.+|.+....|+ ..+++.++=.-+.+|++-|.+.=.-..+-..|.++++......
T Consensus 101 vlRrlL~kyR~skKIdkh~YH~lY~k~KGnvFKnK~~LmE~I~K~KAe~~r~K~LadQaeArr~k~ 166 (193)
T KOG1696|consen 101 VLRRLLKKYRDSKKIDKHMYHDLYLKVKGNVFKNKRVLMEHIHKSKAEKAREKLLADQAEARRLKN 166 (193)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 68889999988876654 6788899999999999999887655555555555555444433
No 59
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=23.22 E-value=1.3e+02 Score=21.48 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=28.6
Q ss_pred HhhHHHHHHhhhhHHHHHHh--HHHHHHHHHHHHHHhhhhh
Q psy130 155 HNTIEAVLQRGEKLDDLVSK--SEGLSMQSKAFYKTARKTN 193 (199)
Q Consensus 155 ~~NIdkiL~Rge~Le~L~~k--S~~L~~~s~~F~k~akkl~ 193 (199)
...+-.+|.++..|+.++.= ++.|....+.....|+.++
T Consensus 4 ~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~ 44 (113)
T PF00306_consen 4 AGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIR 44 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 45566778888888888775 6778888777777777654
No 60
>PTZ00370 STEVOR; Provisional
Probab=22.23 E-value=66 Score=27.59 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=21.2
Q ss_pred CccHHHHHHhc----CCchhhhHHHHHHHhHHHHHHHHHhhHHH
Q psy130 121 FPQLPQYLARY----QNPREADAMTKIQEELDETKIILHNTIEA 160 (199)
Q Consensus 121 f~~l~~l~~~y----~~~~~~dkl~~i~~~v~evk~iM~~NIdk 160 (199)
|.++++.|++. .+....+...+++.++-|.=+-|.-|=..
T Consensus 81 f~e~~e~~~k~~~K~k~~~d~e~k~klEKel~e~~ee~fg~~~~ 124 (296)
T PTZ00370 81 YEQLKEVVEKNGTKYTGGNDAEPMSTLEKELLETYEEMFGDESD 124 (296)
T ss_pred HHHHHHHHHhcCCccccccCcchhHHHHHHHHHHHHHHhcCccc
Confidence 45666666553 22222344666666666655555555444
No 61
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=22.18 E-value=2.2e+02 Score=18.01 Aligned_cols=50 Identities=22% Similarity=0.265 Sum_probs=40.6
Q ss_pred hhhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHH
Q psy130 136 EADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAF 185 (199)
Q Consensus 136 ~~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F 185 (199)
+.+.|.....-++|+.++-.+.++.+-.-++.|....+|..++...-..=
T Consensus 6 e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s 55 (66)
T PF12352_consen 6 ESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKS 55 (66)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34788888899999999999999999988998888888888777664433
No 62
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=21.47 E-value=4.4e+02 Score=21.26 Aligned_cols=53 Identities=23% Similarity=0.468 Sum_probs=35.5
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHhh----hhHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q psy130 141 TKIQEELDETKIILHNTIEAVLQRG----EKLDDLVSKSEGLSMQSKAFYKTARKTNS 194 (199)
Q Consensus 141 ~~i~~~v~evk~iM~~NIdkiL~Rg----e~Le~L~~kS~~L~~~s~~F~k~akkl~~ 194 (199)
.++..++.+.+.-|. .+.+.++.+ |.|++|-.-...|..+......++|.+++
T Consensus 39 a~L~~e~~~L~~q~~-s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEk 95 (193)
T PF14662_consen 39 AQLAEEITDLRKQLK-SLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEK 95 (193)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555665555 335555554 67788888888888888888888877653
No 63
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=21.16 E-value=4.1e+02 Score=20.76 Aligned_cols=47 Identities=11% Similarity=0.244 Sum_probs=36.6
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhh
Q psy130 139 AMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARK 191 (199)
Q Consensus 139 kl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akk 191 (199)
-+-.+-.+|+..-..|..|-. .+|+.+.++-+.|+.+|......+..
T Consensus 31 dlv~la~~iq~Ad~~~~~~t~------~kL~~I~eQi~~Lq~QA~~ile~~~~ 77 (159)
T PF10504_consen 31 DLVDLAQQIQKADSAMRANTC------NKLEVIAEQIRFLQEQARKILEEAER 77 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777778877754 48889999999999999998888765
No 64
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=21.13 E-value=3.4e+02 Score=19.80 Aligned_cols=43 Identities=26% Similarity=0.440 Sum_probs=31.6
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHh-----hhhHHHHHHhHHHHHHHHH
Q psy130 141 TKIQEELDETKIILHNTIEAVLQR-----GEKLDDLVSKSEGLSMQSK 183 (199)
Q Consensus 141 ~~i~~~v~evk~iM~~NIdkiL~R-----ge~Le~L~~kS~~L~~~s~ 183 (199)
.+.+.+-+++...+.+.+..+|+| .+.++.|..+-+.|...-.
T Consensus 66 ~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~ 113 (118)
T TIGR01837 66 DQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVE 113 (118)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 333455567778889999999998 3788888888888776543
No 65
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.54 E-value=3.8e+02 Score=23.40 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=42.5
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhh
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARK 191 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akk 191 (199)
+.+.....+++++-+-....+..+-++.+.|+.+.+....+..+...+....+.
T Consensus 211 ~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~ll~~~r~ 264 (359)
T COG1463 211 DSLAAASDQLDRLLDNLATLTAALAARRDALDDALAALSALAATVNDLLAENRP 264 (359)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455666667777777777778888888999999999999999998888777643
Done!