Query psy130
Match_columns 199
No_of_seqs 137 out of 876
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 16:34:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kyq_A YKT6, synaptobrevin hom 100.0 1.9E-64 6.6E-69 405.8 11.4 198 1-198 1-198 (199)
2 2nut_C Vesicle-trafficking pro 100.0 1E-43 3.5E-48 285.1 9.8 179 7-194 6-190 (196)
3 4b93_A Vesicle-associated memb 100.0 4.3E-43 1.5E-47 280.0 -0.8 176 2-194 2-181 (189)
4 3bw6_A Synaptobrevin homolog Y 100.0 3.2E-38 1.1E-42 241.6 15.3 139 1-139 4-144 (144)
5 1gl2_A Endobrevin; membrane pr 99.9 1.1E-21 3.7E-26 130.1 6.9 62 133-194 4-65 (65)
6 2nps_A VAMP-4, vesicle-associa 99.8 1.8E-21 6E-26 132.4 5.7 65 132-196 2-68 (74)
7 1n7s_A Vesicle-associated memb 99.8 8.7E-21 3E-25 125.1 7.4 59 136-194 2-60 (63)
8 3b5n_A Synaptobrevin homolog 1 99.8 1.2E-20 4E-25 123.6 7.5 58 137-194 1-58 (61)
9 4afi_A AP-3 complex subunit de 99.8 2.2E-20 7.5E-25 146.4 9.2 115 2-133 54-172 (173)
10 1l4a_A Synaptobrevin; snare, s 99.8 9.3E-21 3.2E-25 130.6 3.2 64 133-196 10-75 (80)
11 1sfc_A VAMP 2, protein (synapt 99.8 6.4E-20 2.2E-24 130.4 7.1 60 135-194 27-86 (96)
12 3hd7_A Vesicle-associated memb 99.8 7.4E-20 2.5E-24 129.0 7.2 59 136-194 3-61 (91)
13 2vx8_A Nucleoporin-like protei 99.8 2.1E-18 7.1E-23 134.7 8.5 112 2-132 44-157 (169)
14 2kog_A Vesicle-associated memb 99.7 2.6E-19 8.8E-24 132.0 -1.9 60 135-194 30-89 (119)
15 1urq_A M-tomosyn isoform; tran 99.7 2.7E-17 9.4E-22 107.7 6.5 57 138-194 4-60 (63)
16 3fie_C Fragment of vesicle-ass 98.5 1E-10 3.5E-15 68.7 -8.6 31 136-166 7-37 (38)
17 3zym_A Phosphatidylinositol-bi 98.3 2.8E-07 9.5E-12 78.1 2.6 33 136-168 278-310 (310)
18 2j3t_C Trafficking protein par 96.5 0.025 8.4E-07 42.3 9.9 125 2-131 1-137 (145)
19 2j3w_A Sedlin, trafficking pro 95.9 0.13 4.3E-06 38.2 10.8 127 1-131 3-139 (142)
20 3cue_A Transport protein parti 95.2 0.28 9.5E-06 39.1 11.2 47 58-104 120-188 (219)
21 2fz0_A R-snare NYV1P, V-snare 94.4 0.048 1.7E-06 40.1 4.5 75 25-100 27-114 (149)
22 3cue_C Transport protein parti 93.3 0.51 1.7E-05 35.6 8.6 99 2-104 1-113 (159)
23 2j3t_D Trafficking protein par 90.9 0.97 3.3E-05 36.0 7.8 87 44-133 117-211 (219)
24 3tjz_C Coatomer subunit zeta-1 89.4 3.5 0.00012 30.7 9.6 48 58-106 58-105 (153)
25 3hd7_B Syntaxin-1A; membrane p 84.8 4 0.00014 28.6 7.1 57 138-194 21-87 (109)
26 1w63_M Adaptor-related protein 82.9 12 0.0004 32.3 10.8 95 1-107 1-96 (423)
27 2vgl_S AP-2 complex subunit si 76.3 19 0.00065 25.9 12.9 48 59-107 49-96 (142)
28 2nps_B Syntaxin 13, vesicle-as 76.2 12 0.00043 23.8 7.0 43 138-180 6-48 (71)
29 1t3j_A Mitofusin 1; coiled coi 74.9 14 0.00047 25.4 6.9 49 138-186 36-84 (96)
30 2fh5_A Signal recognition part 72.6 7.5 0.00026 30.0 5.7 50 57-107 53-104 (185)
31 1txp_A HnRNP C, heterogeneous 70.4 3.1 0.00011 21.8 2.1 25 141-169 2-26 (28)
32 1w63_Q Adapter-related protein 67.4 34 0.0012 25.1 12.2 48 59-107 49-96 (158)
33 2vgl_M AP-2 complex subunit MU 61.8 36 0.0012 29.3 8.6 92 5-107 3-94 (435)
34 1jth_B Syntaxin 1A; coiled-coi 50.1 48 0.0016 21.2 6.8 42 138-179 10-51 (77)
35 3hd7_A Vesicle-associated memb 48.7 57 0.002 21.7 6.3 52 138-189 12-63 (91)
36 3b5n_B Protein SSO1; snare com 47.8 49 0.0017 20.7 7.6 44 138-181 10-53 (69)
37 3lcn_C MRNA transport factor G 46.5 24 0.00084 18.4 3.0 22 136-157 4-25 (29)
38 1urq_A M-tomosyn isoform; tran 45.0 54 0.0019 20.4 7.5 51 138-188 11-61 (63)
39 1n7s_B Syntaxin 1A; neuronal s 42.7 60 0.002 20.2 7.8 45 138-182 12-56 (68)
40 1gl2_B Syntaxin 7; membrane pr 41.5 61 0.0021 20.0 7.6 46 138-183 9-54 (65)
41 1l4a_C S-SNAP25 fusion protein 36.0 83 0.0028 20.7 5.2 60 123-183 13-72 (83)
42 3t97_C Nuclear pore glycoprote 32.2 65 0.0022 20.2 3.9 23 161-183 7-29 (64)
43 3k4t_A Virion-associated prote 30.9 1.2E+02 0.0042 20.4 5.9 54 139-195 3-60 (95)
44 2ygg_A Sodium/hydrogen exchang 30.2 51 0.0017 21.2 3.2 23 144-166 6-28 (70)
45 1ccd_A Clara cell 17 KD protei 29.8 66 0.0022 20.8 3.8 43 122-164 21-64 (77)
46 1utg_A Uteroglobin; steroid bi 28.8 59 0.002 20.6 3.4 43 122-164 19-62 (70)
47 1sfc_B Protein (syntaxin 1A), 28.4 1.2E+02 0.0042 19.6 7.6 44 138-181 21-64 (83)
48 4e81_A Chaperone protein DNAK; 28.3 1.2E+02 0.0041 23.4 5.9 44 138-190 172-215 (219)
49 3f6n_A Virion-associated prote 27.9 1.3E+02 0.0045 21.3 5.3 54 139-195 3-60 (129)
50 1nhl_A Synaptosomal-associated 26.2 1.1E+02 0.0037 18.2 7.1 42 142-183 4-45 (54)
51 2ww9_B Protein transport prote 24.2 30 0.001 22.8 1.4 30 163-192 6-35 (80)
52 1qu7_A Methyl-accepting chemot 24.2 2.2E+02 0.0074 22.0 6.7 49 138-186 175-223 (227)
53 1sfc_A VAMP 2, protein (synapt 22.6 1.8E+02 0.0061 19.5 7.6 52 138-189 37-88 (96)
54 1gzs_B SOPE; toxin/cell cycle, 22.5 78 0.0027 23.1 3.4 47 149-197 7-53 (165)
55 1utr_A Uteroglobin; clara cell 21.9 79 0.0027 21.3 3.2 43 122-164 40-83 (96)
56 1l4a_A Synaptobrevin; snare, s 21.7 1.5E+02 0.0053 19.0 4.5 52 138-189 22-73 (80)
57 2p32_A Heat shock 70 kDa prote 20.5 2.1E+02 0.0072 19.5 6.4 44 138-187 46-89 (120)
58 1y4m_A HERV-FRD_6P24.1 proviru 20.0 1.1E+02 0.0036 18.5 3.1 21 137-157 6-26 (53)
No 1
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=1.9e-64 Score=405.80 Aligned_cols=198 Identities=63% Similarity=1.027 Sum_probs=186.4
Q ss_pred CceeEEEEEEEeCCCcceeeeeccCCCCcceeeechHHHHHHHHHHHHHhhcCCCCceeEeeCceEEEEEEeCCCEEEEE
Q psy130 1 MVKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSIKEGEYMCHVFVRGDNLAGIL 80 (199)
Q Consensus 1 ~~kl~~~~v~~~~~~~~~~l~~~~d~~~~~~f~r~~~~e~~~~~s~~i~~~~~~~~k~s~~~~~~~~h~~~~~~~i~~~~ 80 (199)
|||||+|+|+++++++|++|++++|||+||||+|++++||+.|++|+|++++++++|+++++|+|.||+|+.++|++|+|
T Consensus 1 ~mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl~ 80 (199)
T 3kyq_A 1 LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVV 80 (199)
T ss_dssp CCCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEEE
T ss_pred CceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEEE
Confidence 99999999999998899999999999999999999999999999999999999999999999999999889999999999
Q ss_pred EecCCCChHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCCCCccHHHHHHhcCCchhhhHHHHHHHhHHHHHHHHHhhHHH
Q psy130 81 VSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISFPQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEA 160 (199)
Q Consensus 81 itd~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~f~~l~~l~~~y~~~~~~dkl~~i~~~v~evk~iM~~NIdk 160 (199)
|||++||+|+||.||++|.++|...|+...|......+++|+.|+++|++|+||++.|++.+++.+|+||++||++||++
T Consensus 81 itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~~f~~l~~~m~~Y~dp~~~d~l~~~q~el~evk~iM~~NI~~ 160 (199)
T 3kyq_A 81 IADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHYTALDGHLSRYQNPREADPMSKVQAELDETKIILHNTMES 160 (199)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTCCCCTHHHHHHHTTSGGGCCCCHHHHHHHHTCCCEEESSGGG
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHhccchhhhcccccccccHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999866676555677889999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhccccC
Q psy130 161 VLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNSCCSL 198 (199)
Q Consensus 161 iL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~cc~~ 198 (199)
+|+|||+||+|++||++|+.+|+.|+++|+++|+||.|
T Consensus 161 vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lnsCc~~ 198 (199)
T 3kyq_A 161 LLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNSCCAI 198 (199)
T ss_dssp TSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC-----
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999987
No 2
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=1e-43 Score=285.09 Aligned_cols=179 Identities=22% Similarity=0.345 Sum_probs=102.4
Q ss_pred EEEEEeCCCcceeeeeccCCCCc-ceeeechHHHHHHHHHHHHHhhcC--CCCceeEeeCceEEEEEEeCCCEEEEEEec
Q psy130 7 LNILYKAPTSAVMLKSSYDLQSF-SFFQRGSVQEFMTFVSKTMVERSQ--TASRQSIKEGEYMCHVFVRGDNLAGILVSD 83 (199)
Q Consensus 7 ~~v~~~~~~~~~~l~~~~d~~~~-~~f~r~~~~e~~~~~s~~i~~~~~--~~~k~s~~~~~~~~h~~~~~~~i~~~~itd 83 (199)
..|+|.. ++++|++++|++++ |+ +++. +..++ +.++++++ +++|+++++|+|.|| |+.++|++|+||||
T Consensus 6 a~IaR~~--d~~iLa~~~d~~~~~~~-~~~~---~~~~a-~~il~ki~~~~~~r~s~~~~~y~fh-y~~~~gl~~l~i~d 77 (196)
T 2nut_C 6 TMIARVA--DGLPLAASMQEDEQSGR-DLQQ---YQSQA-KQLFRKLNEQSPTRCTLEAGAMTFH-YIIEQGVCYLVLCE 77 (196)
T ss_dssp EEEEETT--TCCEEEEECCCC------CHHH---HHHHH-HHHHHHCCTTSCSEEEEEETTEEEE-EEEETTEEEEEEEE
T ss_pred EEEEEcC--CCcEEEEeecccccccc-cHHH---HHHHH-HHHHHhcCCCCCCeEEEEeCCEEEE-EEeCCCeEEEEEEc
Confidence 3445664 58899999999988 65 6544 44543 77778876 478999999999999 78899999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhcCCCCCCCC-CCcCCC-CC-ccHHHHHHhcCCchhhhHHHHHHHhHHHHHHHHHhhHHH
Q psy130 84 QEYPHRVAHTLITNVLNEFSKAVPPSSWPT-GTEASI-SF-PQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEA 160 (199)
Q Consensus 84 ~~~p~~~af~fL~~i~~~f~~~~~~~~~~~-~~~~~~-~f-~~l~~l~~~y~~~~~~dkl~~i~~~v~evk~iM~~NIdk 160 (199)
++||+++||.||++|.++|...|+. .|.. +.++++ +| +.|+++|++|+||++.|+|.+++.+|+||++||++||++
T Consensus 78 ~~yp~r~af~fL~~i~~~F~~~~~~-~~~~~~~~~~~~~f~~~l~~~~~~y~~~~~~d~l~~~~~~l~ev~~im~~ni~~ 156 (196)
T 2nut_C 78 AAFPKKLAFAYLEDLHSEFDEQHGK-KVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEE 156 (196)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTT-TTTTCCSTTTTGGGHHHHHHHHTTTSCCC-----------------CCEEEHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHhccc-hhccccCCCchHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999974 3443 223333 45 677888888999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q psy130 161 VLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNS 194 (199)
Q Consensus 161 iL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~ 194 (199)
+|+|||+||.|++||++|+.+|+.|+++|+++|+
T Consensus 157 vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~ 190 (196)
T 2nut_C 157 VLQRGEALSALDSKANNLSSLSKKYRQDAKYLNM 190 (196)
T ss_dssp HC--------------------------------
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997
No 3
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=4.3e-43 Score=279.96 Aligned_cols=176 Identities=20% Similarity=0.345 Sum_probs=128.7
Q ss_pred ceeEEEEEEEeCCCcceeeeeccCCCCcceeeechHHHHHHHHHHHHHhhcCC-CCceeEeeCceEEEEEEeCCCEEEEE
Q psy130 2 VKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQT-ASRQSIKEGEYMCHVFVRGDNLAGIL 80 (199)
Q Consensus 2 ~kl~~~~v~~~~~~~~~~l~~~~d~~~~~~f~r~~~~e~~~~~s~~i~~~~~~-~~k~s~~~~~~~~h~~~~~~~i~~~~ 80 (199)
|.|+...|.|. ..+|++.... .+||..++ +.+++++|+ ++|+++++|+|.|| |+.++|++|+|
T Consensus 2 M~ilYa~VArg----~~iLae~t~~----------~gnf~~ia-~~iL~kip~~~~k~s~~~~~y~fH-yl~~~gl~yl~ 65 (189)
T 4b93_A 2 MAILFAVVARG----TTILAKHAWC----------GGNFLEVT-EQILAKIPSENNKLTYSHGNYLFH-YICQDRIVYLC 65 (189)
T ss_dssp CSEEEEEEEET----TEEEEEEESS----------EECHHHHH-HHHHTTCCSSSEEEEEEETTEEEE-EEEETTEEEEE
T ss_pred CceEEEEEEeC----CEEEEeCCCC----------CCCHHHHH-HHHHHhCCCCCCeEEEEECCEEEE-EEEeCCeEEEE
Confidence 67777777773 4577764321 25677775 889999986 68999999999999 68899999999
Q ss_pred EecCCCChHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCC--CC-ccHHHHHHhcCCchhhhHHHHHHHhHHHHHHHHHhh
Q psy130 81 VSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASI--SF-PQLPQYLARYQNPREADAMTKIQEELDETKIILHNT 157 (199)
Q Consensus 81 itd~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~--~f-~~l~~l~~~y~~~~~~dkl~~i~~~v~evk~iM~~N 157 (199)
|||.+||+++||.||++|.++|...|+... .++.++.. +| +.|+++|++|++|++.|++.+++.+|+||++||++|
T Consensus 66 i~d~~yp~r~af~fL~~i~~eF~~~~~~~~-~~~~~~~~~~~f~~~l~~~~~~y~d~~~~d~l~~~~~~l~ev~~im~~N 144 (189)
T 4b93_A 66 ITDDDFERSRAFSFLNEVKKRFQTTYGSRA-QTALPYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRN 144 (189)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHHGGGG-GTCCTTTTHHHHHHHHHHHHHHHHCC-------CCHHHHHTTTTCCEEC
T ss_pred EEcCccCHHHHHHHHHHHHHHHHhhccccc-cccCCccccchhhHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997543 22223333 46 789999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q psy130 158 IEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNS 194 (199)
Q Consensus 158 IdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~ 194 (199)
|+++|+|||+||.|++||++|+.+|+.|+++|++++|
T Consensus 145 i~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r 181 (189)
T 4b93_A 145 IDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLAR 181 (189)
T ss_dssp CCCBCTTSSBCCCCEETTCC-----------------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998
No 4
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=100.00 E-value=3.2e-38 Score=241.63 Aligned_cols=139 Identities=36% Similarity=0.721 Sum_probs=124.1
Q ss_pred CceeEEEEEEEeCCCcceeeeeccCCCCcceeeechHHHHHHHHHHHHHhhcCCCCceeEeeCceEEEEEEeCCCEEEEE
Q psy130 1 MVKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSIKEGEYMCHVFVRGDNLAGIL 80 (199)
Q Consensus 1 ~~kl~~~~v~~~~~~~~~~l~~~~d~~~~~~f~r~~~~e~~~~~s~~i~~~~~~~~k~s~~~~~~~~h~~~~~~~i~~~~ 80 (199)
|||||+++|+|+++++|++|++++|+++||||+|++++||+.+++|+|++|+++++|+++++|+|.||++.++||++|+|
T Consensus 4 ~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~sv~~~~y~fH~~~~~~gl~~l~ 83 (144)
T 3bw6_A 4 AMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVL 83 (144)
T ss_dssp CCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEEEEEETTEEEEEEECTTSEEEEE
T ss_pred EEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceEEEEeCCEEEEEEEecCCEEEEE
Confidence 79999999999987789999999999999999999999999999999999999999999999999999765899999999
Q ss_pred EecCCCChHHHHHHHHHHHHHHhhcCCCCCCCCC-CcC-CCCCccHHHHHHhcCCchhhhH
Q psy130 81 VSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTG-TEA-SISFPQLPQYLARYQNPREADA 139 (199)
Q Consensus 81 itd~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~-~~~-~~~f~~l~~l~~~y~~~~~~dk 139 (199)
|||.+||+|+||.||++|.++|..+|+...|.++ .+. +++|+.|+++|++|+||+++|+
T Consensus 84 i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~~~~f~~l~~~i~kYqdp~~aD~ 144 (144)
T 3bw6_A 84 ITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKMKQLDTYISKYQDPSQADA 144 (144)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCGGGCCTHHHHHHHHTSCC-----
T ss_pred EECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccCCcchHHHHHHHHHhCchhhcCC
Confidence 9999999999999999999999999986546642 223 7789999999999999998875
No 5
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.85 E-value=1.1e-21 Score=130.14 Aligned_cols=62 Identities=32% Similarity=0.495 Sum_probs=52.9
Q ss_pred CchhhhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q psy130 133 NPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNS 194 (199)
Q Consensus 133 ~~~~~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~ 194 (199)
+|++.|+|.+++.+|+||+.||.+||++||+|||+||.|++||++|+.+|..|+++|++++|
T Consensus 4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56678999999999999999999999999999999999999999999999999999999985
No 6
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.84 E-value=1.8e-21 Score=132.39 Aligned_cols=65 Identities=29% Similarity=0.474 Sum_probs=59.3
Q ss_pred CCchhhhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhc--cc
Q psy130 132 QNPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNS--CC 196 (199)
Q Consensus 132 ~~~~~~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~--cc 196 (199)
++|++.|+|.+++.+|+||++||.+||++||+|||+||.|++||++|+.+|..|+++|+++++ ||
T Consensus 2 ~~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww 68 (74)
T 2nps_A 2 SMGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWW 68 (74)
T ss_dssp ----CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778999999999999999999999999999999999999999999999999999999997 55
No 7
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.83 E-value=8.7e-21 Score=125.11 Aligned_cols=59 Identities=24% Similarity=0.403 Sum_probs=57.3
Q ss_pred hhhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q psy130 136 EADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNS 194 (199)
Q Consensus 136 ~~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~ 194 (199)
+.|+|.+++.+|+||++||.+||+++|+|||+||.|++||++|+.+|..|+++|+++++
T Consensus 2 ~~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r 60 (63)
T 1n7s_A 2 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 60 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999999999999999999999999999999999999999999987
No 8
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.83 E-value=1.2e-20 Score=123.64 Aligned_cols=58 Identities=26% Similarity=0.512 Sum_probs=56.5
Q ss_pred hhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q psy130 137 ADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNS 194 (199)
Q Consensus 137 ~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~ 194 (199)
.|++.+++.+|+||++||.+||+++|+|||+||.|++||++|+.+|..|+++|+++++
T Consensus 1 gd~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r 58 (61)
T 3b5n_A 1 GSRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRK 58 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999999999987
No 9
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=99.82 E-value=2.2e-20 Score=146.41 Aligned_cols=115 Identities=12% Similarity=0.279 Sum_probs=93.7
Q ss_pred ceeEEEEEEEeCCCcceeeeeccCCCCcceeeechHHHHHHHHHHHHHhhcCC-CCceeEeeCceEEEEEEeCCCEEEEE
Q psy130 2 VKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQT-ASRQSIKEGEYMCHVFVRGDNLAGIL 80 (199)
Q Consensus 2 ~kl~~~~v~~~~~~~~~~l~~~~d~~~~~~f~r~~~~e~~~~~s~~i~~~~~~-~~k~s~~~~~~~~h~~~~~~~i~~~~ 80 (199)
|.|+...|.|. ..+|++..+.+ |||..+ ++++++++++ ++|++++.|+|.|| |+.++|++|+|
T Consensus 54 M~I~Ya~VArg----~tiLAE~t~~~----------gnf~~v-a~~iL~kip~~~~r~t~~~~~y~fH-yl~~dgl~yl~ 117 (173)
T 4afi_A 54 MAILFAVVARG----TTILAKHAWCG----------GNFLEV-TEQILAKIPSENNKLTYSHGNYLFH-YICQDRIVYLC 117 (173)
T ss_dssp CCEEEEEEEET----TEEEEEEESSC----------CCHHHH-HHHHHTTSCSSSEEEEEEETTEEEE-EEEETTEEEEE
T ss_pred ccEEEEEEECC----CEEEEEccCCC----------CCHHHH-HHHHHHhCCCCCCeEEEEECCEEEE-EEEECCEEEEE
Confidence 56666677664 45777654422 567765 5999999998 78999999999999 57789999999
Q ss_pred EecCCCChHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCC--CC-ccHHHHHHhcCC
Q psy130 81 VSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASI--SF-PQLPQYLARYQN 133 (199)
Q Consensus 81 itd~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~--~f-~~l~~l~~~y~~ 133 (199)
|||.+||+++||.||++|+++|...|+. .|.++.++++ +| +.|+++|++||+
T Consensus 118 i~D~~~~rr~aF~FLedI~~eF~~~yg~-~~~ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 118 ITDDDFERSRAFSFLNEVKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHHGG-GGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred EECCccChhHHHHHHHHHHHHHHHHhch-hhhhccCcchhHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999974 5665555555 57 889999999975
No 10
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.80 E-value=9.3e-21 Score=130.63 Aligned_cols=64 Identities=19% Similarity=0.345 Sum_probs=60.0
Q ss_pred CchhhhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhc--cc
Q psy130 133 NPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNS--CC 196 (199)
Q Consensus 133 ~~~~~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~--cc 196 (199)
+|.+.|+|.+++.+|+||++||.+||++||+|||+||.|++||++|+.+|..|+++|+++++ ||
T Consensus 10 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~ww 75 (80)
T 1l4a_A 10 PVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWW 75 (80)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC-
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567999999999999999999999999999999999999999999999999999999997 55
No 11
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.80 E-value=6.4e-20 Score=130.43 Aligned_cols=60 Identities=23% Similarity=0.395 Sum_probs=58.0
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q psy130 135 READAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNS 194 (199)
Q Consensus 135 ~~~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~ 194 (199)
...|+|.+++.+|+||++||++||++||+|||+||.|++||++|+.+|..|+++|+++++
T Consensus 27 ~~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~r 86 (96)
T 1sfc_A 27 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 86 (96)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346999999999999999999999999999999999999999999999999999999997
No 12
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.80 E-value=7.4e-20 Score=129.04 Aligned_cols=59 Identities=24% Similarity=0.402 Sum_probs=57.5
Q ss_pred hhhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q psy130 136 EADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNS 194 (199)
Q Consensus 136 ~~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~ 194 (199)
+.|++.+++.+|+||++||.+|||++|+|||+||.|++||++|+++|..|+++|+++++
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~r 61 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 61 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999999999999999999999999999999999999999999997
No 13
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.75 E-value=2.1e-18 Score=134.72 Aligned_cols=112 Identities=12% Similarity=0.248 Sum_probs=87.9
Q ss_pred ceeEEEEEEEeCCCcceeeeeccCCCCcceeeechHHHHHHHHHHHHHhhcCC-CCceeEeeCceEEEEEEeCCCEEEEE
Q psy130 2 VKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQT-ASRQSIKEGEYMCHVFVRGDNLAGIL 80 (199)
Q Consensus 2 ~kl~~~~v~~~~~~~~~~l~~~~d~~~~~~f~r~~~~e~~~~~s~~i~~~~~~-~~k~s~~~~~~~~h~~~~~~~i~~~~ 80 (199)
|+|+...|.|. .++|++..+.+ +++..++ +++++++++ ++|+++++|+|.||+ +.+||++|+|
T Consensus 44 M~ilYa~VaRG----~~VLae~t~~~----------gnf~~ia-k~ll~kl~~~~~r~s~~~~~y~fHy-l~~ngl~yl~ 107 (169)
T 2vx8_A 44 MAILFAVVARG----TTILAKHAWCG----------GNFLEVT-EQILAKIPSENNKLTYSHGNYLFHY-ICQDRIVYLC 107 (169)
T ss_dssp SCCCEEEEEET----TEEEEEEESSC----------BSHHHHH-HHHHTTSCSSCEEEEEEETTEEEEE-EEETTEEEEE
T ss_pred CceEEEEEEcC----CEEEEEeccCC----------CCHHHHH-HHHHhhCCCCCCceEEEECCEEEEE-EEECCEEEEE
Confidence 66777777663 47787766522 3666764 999999987 789999999999995 5689999999
Q ss_pred EecCCCChHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCCCCc-cHHHHHHhcC
Q psy130 81 VSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISFP-QLPQYLARYQ 132 (199)
Q Consensus 81 itd~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~f~-~l~~l~~~y~ 132 (199)
|||++||+++||.||++|+++|...|+. .|..+ .+++|. +|+..|++|.
T Consensus 108 I~D~~yp~r~AF~fLedI~~eF~~~y~~-~~~~a--~pysf~~eF~~~Lk~~~ 157 (169)
T 2vx8_A 108 ITDDDFERSRAFSFLNEVKKRFQTTYGS-RAQTA--LPYAMNSEFSSVLAAQL 157 (169)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHHTT-GGGTC--CTTTTHHHHHHHHSCC-
T ss_pred EEccccchHHHHHHHHHHHHHHHHHhhh-hhhcc--CCcchhHHHHHHHHHHH
Confidence 9999999999999999999999999985 45543 456664 6666665543
No 14
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.71 E-value=2.6e-19 Score=132.00 Aligned_cols=60 Identities=23% Similarity=0.395 Sum_probs=58.1
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q psy130 135 READAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNS 194 (199)
Q Consensus 135 ~~~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~ 194 (199)
.+.|++.+++.+|+||++||.+||+++|+|||+||+|++||++|+.+|+.|+++|+++++
T Consensus 30 ~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~r 89 (119)
T 2kog_A 30 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 89 (119)
T ss_dssp SSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999999999999999999999999999999999999999999999997
No 15
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.70 E-value=2.7e-17 Score=107.74 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=53.9
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNS 194 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~ 194 (199)
.++..++.++++|++||.+||+++|+|||+|+.|++||++|..+|..|.++|+++.+
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~ 60 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMML 60 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999876
No 16
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.53 E-value=1e-10 Score=68.74 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=29.3
Q ss_pred hhhHHHHHHHhHHHHHHHHHhhHHHHHHhhh
Q psy130 136 EADAMTKIQEELDETKIILHNTIEAVLQRGE 166 (199)
Q Consensus 136 ~~dkl~~i~~~v~evk~iM~~NIdkiL~Rge 166 (199)
..|++.+++.+|+||++||.+||+++|+||+
T Consensus 7 ~~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 7 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred chhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 4589999999999999999999999999997
No 17
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.27 E-value=2.8e-07 Score=78.10 Aligned_cols=33 Identities=33% Similarity=0.605 Sum_probs=24.0
Q ss_pred hhhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhH
Q psy130 136 EADAMTKIQEELDETKIILHNTIEAVLQRGEKL 168 (199)
Q Consensus 136 ~~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~L 168 (199)
..|.+.++|+||+||++||.+|||++|+|||+|
T Consensus 278 p~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 278 HMDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 358999999999999999999999999999987
No 18
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=96.52 E-value=0.025 Score=42.34 Aligned_cols=125 Identities=10% Similarity=0.157 Sum_probs=75.3
Q ss_pred ceeEEEEEEEeCCCcceeeeeccCCCCcceee-echH--HHHHHHHHHHHHhhcCCC----CceeEeeCceEEEEEEeCC
Q psy130 2 VKLFALNILYKAPTSAVMLKSSYDLQSFSFFQ-RGSV--QEFMTFVSKTMVERSQTA----SRQSIKEGEYMCHVFVRGD 74 (199)
Q Consensus 2 ~kl~~~~v~~~~~~~~~~l~~~~d~~~~~~f~-r~~~--~e~~~~~s~~i~~~~~~~----~k~s~~~~~~~~h~~~~~~ 74 (199)
|.+|++.|+-.+. ..+...++.-+.-+-.. .... --..-++.+.+.+++.|. ...+++.+.|..|+|.+..
T Consensus 1 M~i~~~~Ii~k~g--~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~T 78 (145)
T 2j3t_C 1 MTVHNLYLFDRNG--VCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPT 78 (145)
T ss_dssp -CEEEEEEECTTS--CEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTT
T ss_pred CeEEEEEEEeCCC--CEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCC
Confidence 6789999988764 34455555422110011 1111 122334567777777553 3567788999999999999
Q ss_pred CEEEEEEecCCCChHHHHHHHHHHH-HHHhhcCCCCCCCCCCcCCC---CC-ccHHHHHHhc
Q psy130 75 NLAGILVSDQEYPHRVAHTLITNVL-NEFSKAVPPSSWPTGTEASI---SF-PQLPQYLARY 131 (199)
Q Consensus 75 ~i~~~~itd~~~p~~~af~fL~~i~-~~f~~~~~~~~~~~~~~~~~---~f-~~l~~l~~~y 131 (199)
|+-|+.++|+..+. .-.||++|. +.|.+-.-.+.+-. +..++ .| ..++.+++++
T Consensus 79 giKFvl~td~~~~~--i~~~l~~iy~~lYv~~v~kNPfy~-~~~pI~s~~Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 79 GIKVVMNTDLGVGP--IRDVLHHIYSALYVEFVVKNPLCP-LGQTVQSELFRSRLDSYVRSL 137 (145)
T ss_dssp SCEEEEEECTTCCC--CHHHHHHHHHTTHHHHTTTCTTSC-TTSCCCCHHHHHHHHHHHTTS
T ss_pred CCEEEEEecCCcch--HHHHHHHHHHHHHHHHHhcCCCCC-CCCceecHHHHHHHHHHHHhC
Confidence 99999999997654 557899998 67766332232222 23333 35 4566666553
No 19
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=95.85 E-value=0.13 Score=38.20 Aligned_cols=127 Identities=13% Similarity=0.160 Sum_probs=74.2
Q ss_pred CceeEEEEEEEeCCCcceeeeeccCCCCcceeeech-HHHHHHHHHHHHHhhcCC--CC---ceeEeeCceEEEEEEeCC
Q psy130 1 MVKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGS-VQEFMTFVSKTMVERSQT--AS---RQSIKEGEYMCHVFVRGD 74 (199)
Q Consensus 1 ~~kl~~~~v~~~~~~~~~~l~~~~d~~~~~~f~r~~-~~e~~~~~s~~i~~~~~~--~~---k~s~~~~~~~~h~~~~~~ 74 (199)
|+-++++.|+-.+. .|+...+-...+..+.=+... ...++-+++..++++..+ ++ ..+...++|..|+|.+..
T Consensus 3 M~~i~~~~Ii~~~~-~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~t 81 (142)
T 2j3w_A 3 MSGSFYFVIVGHHD-NPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAG 81 (142)
T ss_dssp CCCCEEEEEECTTS-CEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTT
T ss_pred cceEEEEEEEeCCC-CEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCC
Confidence 44488998887653 455554433322211100000 112445556666665532 22 345567899999999999
Q ss_pred CEEEEEEecCCCChHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCC---CC-ccHHHHHHhc
Q psy130 75 NLAGILVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASI---SF-PQLPQYLARY 131 (199)
Q Consensus 75 ~i~~~~itd~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~---~f-~~l~~l~~~y 131 (199)
|+=|+.++|+. ...-.-.||++|.+.|.+... +.+.. ++.++ .| ..++.++++|
T Consensus 82 g~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~-NPfy~-~~~pI~s~~Fd~~v~~~~~~~ 139 (142)
T 2j3w_A 82 HMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAM-NPFYE-PNSPIRSSAFDRKVQFLGKKH 139 (142)
T ss_dssp CCEEEEEESSC-CHHHHHHHHHHHHHHHHHHHH-STTCC-TTCCCCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhc-CCCCC-CCCceecHHHHHHHHHHHHHh
Confidence 99999999984 345577889999988776332 33222 23334 35 4566666665
No 20
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.28 Score=39.08 Aligned_cols=47 Identities=13% Similarity=0.301 Sum_probs=38.4
Q ss_pred eeEeeCceEEEEEEeCCCEEEEEEecCCCCh----------------------HHHHHHHHHHHHHHhh
Q psy130 58 QSIKEGEYMCHVFVRGDNLAGILVSDQEYPH----------------------RVAHTLITNVLNEFSK 104 (199)
Q Consensus 58 ~s~~~~~~~~h~~~~~~~i~~~~itd~~~p~----------------------~~af~fL~~i~~~f~~ 104 (199)
..+..+.|.+|+|....|+-|++++|+..|. ...-.||.+|.+.|.+
T Consensus 120 ~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd 188 (219)
T 3cue_A 120 RQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSD 188 (219)
T ss_dssp CEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999998743 4567899999988876
No 21
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=94.42 E-value=0.048 Score=40.09 Aligned_cols=75 Identities=5% Similarity=0.203 Sum_probs=51.1
Q ss_pred CCCCcceeeec----hHHHHHHHHHHHHHhhcCC--C---CceeEe-eCceEEEEEEe---CCCEEEEEEecCCCChHHH
Q psy130 25 DLQSFSFFQRG----SVQEFMTFVSKTMVERSQT--A---SRQSIK-EGEYMCHVFVR---GDNLAGILVSDQEYPHRVA 91 (199)
Q Consensus 25 d~~~~~~f~r~----~~~e~~~~~s~~i~~~~~~--~---~k~s~~-~~~~~~h~~~~---~~~i~~~~itd~~~p~~~a 91 (199)
..+.||-..+. +-.-|-+.+-..+++++-+ + +|++.. .|+|-++ |.. ++|.+|+|+|..+.|+-+|
T Consensus 27 ~~s~YGs~~~~~~~~tp~~Fh~Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCY-YtT~~~~~~~VlVCFt~~dvPKILP 105 (149)
T 2fz0_A 27 KNENYGTITSANEQITPVIFHNLIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCF-YSTDDHDPKTVYVCFTLVDIPKILP 105 (149)
T ss_dssp SSSSCSCCSSTTSSCCHHHHHHHHHHTTGGGCCCCSSCSSEECCSCCSSSEEEE-ECCCSSCTTEEEEEEEETTSCSSHH
T ss_pred CCcccccccccccccCHHHHHHHHHheecceEEecCCCeEEEEeeeccccceee-eeccCCCCCeEEEEEEecCCccccc
Confidence 44555544331 2223445555556666532 3 455565 5999999 554 4568999999999999999
Q ss_pred HHHHHHHHH
Q psy130 92 HTLITNVLN 100 (199)
Q Consensus 92 f~fL~~i~~ 100 (199)
...|.++++
T Consensus 106 iRlLSeLk~ 114 (149)
T 2fz0_A 106 IRILSGLQE 114 (149)
T ss_dssp HHHHHHHTT
T ss_pred HHHHhhhcc
Confidence 999999975
No 22
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=93.27 E-value=0.51 Score=35.64 Aligned_cols=99 Identities=14% Similarity=0.294 Sum_probs=61.5
Q ss_pred ceeEEEEEEEeCCCcceeeeeccCCC---Ccceee-echHHH-----HHHHHHHHHHhhcCCC----CceeEeeCceEEE
Q psy130 2 VKLFALNILYKAPTSAVMLKSSYDLQ---SFSFFQ-RGSVQE-----FMTFVSKTMVERSQTA----SRQSIKEGEYMCH 68 (199)
Q Consensus 2 ~kl~~~~v~~~~~~~~~~l~~~~d~~---~~~~f~-r~~~~e-----~~~~~s~~i~~~~~~~----~k~s~~~~~~~~h 68 (199)
|.+|++.|+-.+. ..+...++.-. +-+--. +....+ ..-+..+.+..++.+. .-..++.+.|..|
T Consensus 1 M~i~~~~Ii~r~g--~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~ 78 (159)
T 3cue_C 1 MGIYSFWIFDRHC--NCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVH 78 (159)
T ss_dssp CCCCEEEEECSSS--CEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEE
T ss_pred CeEEEEEEEcCCC--ceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEE
Confidence 6789999988764 33444444321 000000 001111 1345567788887543 4566778999999
Q ss_pred EEEeCCCEEEEEEecCCCChHHHHHHHHHHHH-HHhh
Q psy130 69 VFVRGDNLAGILVSDQEYPHRVAHTLITNVLN-EFSK 104 (199)
Q Consensus 69 ~~~~~~~i~~~~itd~~~p~~~af~fL~~i~~-~f~~ 104 (199)
+|.+..|+-|++++|+..+. .-.+|++|.. .|.+
T Consensus 79 ~~eT~TgiKFvl~td~~~~~--i~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 79 TYCTASGLWFVLLSDFKQQS--YTQVLQYIYSHIYVK 113 (159)
T ss_dssp EECCSSCCEEEEECCSSSSC--THHHHHHHHHHHHHH
T ss_pred EEEeCCCCEEEEEeCCCcch--HHHHHHHHHHHHHHH
Confidence 99999999999999987553 4457788876 6555
No 23
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=90.86 E-value=0.97 Score=35.96 Aligned_cols=87 Identities=10% Similarity=0.145 Sum_probs=59.0
Q ss_pred HHHHHHhhcCCC----CceeEeeCceEEEEEEeCCCEEEEEEecCCCChHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCC
Q psy130 44 VSKTMVERSQTA----SRQSIKEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASI 119 (199)
Q Consensus 44 ~s~~i~~~~~~~----~k~s~~~~~~~~h~~~~~~~i~~~~itd~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~ 119 (199)
.-+.+..++.|. .-.+++.+.|..|+|.+..|+-|+.++|+.-+ -.-.||++|.+.|.+..-.+.+-. +..++
T Consensus 117 SLd~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~~~--~ir~~l~~IyelYvd~V~kNPFY~-~~~pI 193 (219)
T 2j3t_D 117 SLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQA--GIDSLLRKIYEIYSDFALKNPFYS-LEMPI 193 (219)
T ss_dssp HHHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTTCC--CHHHHHHHHHHHHHHHHTTCTTCC-TTSCC
T ss_pred HHHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCCch--HHHHHHHHHHHHHHHHhccCCCCC-CCCcc
Confidence 346666777552 34677889999999999999999999998744 355788888877776322222222 23334
Q ss_pred ---CC-ccHHHHHHhcCC
Q psy130 120 ---SF-PQLPQYLARYQN 133 (199)
Q Consensus 120 ---~f-~~l~~l~~~y~~ 133 (199)
.| ..++.+++++..
T Consensus 194 ~s~~Fd~~v~~l~~~~~~ 211 (219)
T 2j3t_D 194 RCELFDQNLKLALEVAEK 211 (219)
T ss_dssp CCHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHhhc
Confidence 36 567777777654
No 24
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=89.44 E-value=3.5 Score=30.69 Aligned_cols=48 Identities=6% Similarity=0.028 Sum_probs=40.8
Q ss_pred eeEeeCceEEEEEEeCCCEEEEEEecCCCChHHHHHHHHHHHHHHhhcC
Q psy130 58 QSIKEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAV 106 (199)
Q Consensus 58 ~s~~~~~~~~h~~~~~~~i~~~~itd~~~p~~~af~fL~~i~~~f~~~~ 106 (199)
-.+..+++.+. |....++.++++++.+.+.-..+.||..+.+.+..-+
T Consensus 58 ~i~~~~~~~~v-y~~~~~Lyfv~~~~~~eNel~ile~L~~~ve~l~~yf 105 (153)
T 3tjz_C 58 EIALLEGLTVV-YKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQML 105 (153)
T ss_dssp CEEEETTEEEE-EEECSSCEEEEEEETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCEEEE-EEEECCEEEEEEEcCCCChHHHHHHHHHHHHHHHHHh
Confidence 35567888887 7888999999999999999999999998887777655
No 25
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=84.76 E-value=4 Score=28.56 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=42.7
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHH----------HHHHHHHHhhhhhc
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSM----------QSKAFYKTARKTNS 194 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~----------~s~~F~k~akkl~~ 194 (199)
+.+.++++.+.|+.+++.+==.-+-+-|+-+|.++...++-.. .|..+++++++..-
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~ 87 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 87 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcce
Confidence 6788999999999999988878888889888888776554332 34556666666554
No 26
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=82.89 E-value=12 Score=32.30 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=60.1
Q ss_pred CceeEEEEEEEeCCCcceeeeeccCCCCcceeeechHHHHHHHHHHHHHhhcC-CCCceeEeeCceEEEEEEeCCCEEEE
Q psy130 1 MVKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQ-TASRQSIKEGEYMCHVFVRGDNLAGI 79 (199)
Q Consensus 1 ~~kl~~~~v~~~~~~~~~~l~~~~d~~~~~~f~r~~~~e~~~~~s~~i~~~~~-~~~k~s~~~~~~~~h~~~~~~~i~~~ 79 (199)
|| |-++.++-... -.+|+..|.-.. .|+... .|. +.+..+.. ...--.++.+++.|. |...+++.|+
T Consensus 1 mM-I~~i~I~~~~G--k~~l~k~y~~~~----~~~~~~---~f~-~~v~~~~~~~~~~~~i~~~~~~~v-y~~~~~Lyfv 68 (423)
T 1w63_M 1 MS-ASAVYVLDLKG--KVLICRNYRGDV----DMSEVE---HFM-PILMEKEEEGMLSPILAHGGVRFM-WIKHNNLYLV 68 (423)
T ss_dssp -C-CCEEEEEETTT--EECSCBCCSCSC----TTTTHH---HHH-HHHHHHHHTSCCCSEEEETTEEEE-EEEETTEEEE
T ss_pred Cc-eEEEEEECCCC--CEEEEEecCCCC----ChHHHH---HHH-HHHhhccccCCCCCEEEECCEEEE-EEEECCEEEE
Confidence 45 66777765432 446777776321 133332 233 33443322 122234567787776 6778899999
Q ss_pred EEecCCCChHHHHHHHHHHHHHHhhcCC
Q psy130 80 LVSDQEYPHRVAHTLITNVLNEFSKAVP 107 (199)
Q Consensus 80 ~itd~~~p~~~af~fL~~i~~~f~~~~~ 107 (199)
|+++.+.+.-..+.||..+.+-+..-++
T Consensus 69 ~~~~~~~n~l~~le~L~~~v~~l~~yf~ 96 (423)
T 1w63_M 69 ATSKKNACVSLVFSFLYKVVQVFSEYFK 96 (423)
T ss_dssp EEESSCCCTHHHHHHHHHHHHHHHHHSS
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988877776554
No 27
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=76.28 E-value=19 Score=25.92 Aligned_cols=48 Identities=10% Similarity=0.020 Sum_probs=39.5
Q ss_pred eEeeCceEEEEEEeCCCEEEEEEecCCCChHHHHHHHHHHHHHHhhcCC
Q psy130 59 SIKEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVP 107 (199)
Q Consensus 59 s~~~~~~~~h~~~~~~~i~~~~itd~~~p~~~af~fL~~i~~~f~~~~~ 107 (199)
.++.+++.+- |...+++.++|+++.+.+.-..+.||..+.+.+..-++
T Consensus 49 ~~~~~~~~~v-y~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 49 FVEFRNFKII-YRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp EEEETTEEEE-EEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCEEEE-EEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 3567777766 67778999999999999999999999988877776554
No 28
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=76.22 E-value=12 Score=23.77 Aligned_cols=43 Identities=12% Similarity=0.329 Sum_probs=36.6
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHH
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSM 180 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~ 180 (199)
+.+.+|+..+.|+.+++.+==.-|-+-|+-||.+....+.-..
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 48 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEV 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6789999999999999999888899999999988877555443
No 29
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=74.86 E-value=14 Score=25.42 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=40.9
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHH
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFY 186 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~ 186 (199)
.-...+..+|++|+.-|.+=|+.+=..=..||.+..++.-|...|.-+.
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~ 84 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLE 84 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4677899999999999999999999998999888888777777666443
No 30
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=72.60 E-value=7.5 Score=29.96 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=38.3
Q ss_pred ceeEeeCceEEEEEEeCC--CEEEEEEecCCCChHHHHHHHHHHHHHHhhcCC
Q psy130 57 RQSIKEGEYMCHVFVRGD--NLAGILVSDQEYPHRVAHTLITNVLNEFSKAVP 107 (199)
Q Consensus 57 k~s~~~~~~~~h~~~~~~--~i~~~~itd~~~p~~~af~fL~~i~~~f~~~~~ 107 (199)
..++.+|+|..+ +.-.| |++|+++-..-.+-.-+=.||+.++..|...|+
T Consensus 53 ~~~y~~d~ytlk-W~l~NEl~LVFVvVYQ~iL~L~YiD~LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 53 NNSFTHEALTLK-YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYR 104 (185)
T ss_dssp ----CCCCCEEE-EEEETTTTEEEEEEESCGGGHHHHHHHHHHHHHHHHHHTH
T ss_pred CCceeEcCeEEE-EEEeccCCEEEEEEEcccccchHHHHHHHHHHHHHHHHHH
Confidence 346889999988 44444 499999988877777777899999999999995
No 31
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=70.38 E-value=3.1 Score=21.83 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=17.8
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHhhhhHH
Q psy130 141 TKIQEELDETKIILHNTIEAVLQRGEKLD 169 (199)
Q Consensus 141 ~~i~~~v~evk~iM~~NIdkiL~Rge~Le 169 (199)
..++.++.++| .|||.+|+|=|+++
T Consensus 2 Q~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 2 QAIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 35667776665 48899998877764
No 32
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=67.36 E-value=34 Score=25.10 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=39.0
Q ss_pred eEeeCceEEEEEEeCCCEEEEEEecCCCChHHHHHHHHHHHHHHhhcCC
Q psy130 59 SIKEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVP 107 (199)
Q Consensus 59 s~~~~~~~~h~~~~~~~i~~~~itd~~~p~~~af~fL~~i~~~f~~~~~ 107 (199)
.++.+++.|- |...+++.++|+++.+.+.-..+.||..+.+.+..-++
T Consensus 49 ~i~~~~~~~v-y~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 49 FLEWRDLKVV-YKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFG 96 (158)
T ss_dssp EEEETTEEEE-EEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred eEEECCEEEE-EEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 3567777766 67788999999999999999999999988777766444
No 33
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=61.83 E-value=36 Score=29.25 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=56.8
Q ss_pred EEEEEEEeCCCcceeeeeccCCCCcceeeechHHHHHHHHHHHHHhhcCCCCceeEeeCceEEEEEEeCCCEEEEEEecC
Q psy130 5 FALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSIKEGEYMCHVFVRGDNLAGILVSDQ 84 (199)
Q Consensus 5 ~~~~v~~~~~~~~~~l~~~~d~~~~~~f~r~~~~e~~~~~s~~i~~~~~~~~k~s~~~~~~~~h~~~~~~~i~~~~itd~ 84 (199)
-+++++-.. .-.+|+..|.-. . .|+.. ..|. +.+..+-.+..--.++.+++.|- |...+++.|+|+++.
T Consensus 3 ~~i~I~~~~--Gk~~l~k~y~~~-~---~~~~~---~~f~-~~v~~~~~~~~~~ii~~~~~~~v-y~~~~~Lyfv~~~~~ 71 (435)
T 2vgl_M 3 GGLFIYNHK--GEVLISRVYRDD-I---GRNAV---DAFR-VNVIHARQQVRSPVTNIARTSFF-HVKRSNIWLAAVTKQ 71 (435)
T ss_dssp CEEEEECTT--CCEEEEEECSSS-C---CHHHH---HHHH-HHTTTCSSCCCCSEEEETTEEEE-EEEETTEEEEEEESS
T ss_pred EEEEEECCC--CCEEEEEecCCC-C---ChhHH---HHHH-HHHhccccCCCCCEEEECCEEEE-EEEECCEEEEEEecC
Confidence 355555433 235777777632 1 13322 2232 33433222222234567887776 677889999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhcCC
Q psy130 85 EYPHRVAHTLITNVLNEFSKAVP 107 (199)
Q Consensus 85 ~~p~~~af~fL~~i~~~f~~~~~ 107 (199)
+.+.-..+.||..+.+-+..-++
T Consensus 72 ~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 72 NVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988777666444
No 34
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=50.13 E-value=48 Score=21.23 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=35.3
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHH
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLS 179 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~ 179 (199)
+.+.+++..+.|+.+++.+==.-|.+-|+-||.+....+.-.
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 51 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 51 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 678999999999999999988899999999988866554433
No 35
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=48.68 E-value=57 Score=21.73 Aligned_cols=52 Identities=4% Similarity=0.059 Sum_probs=38.3
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHh
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTA 189 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~a 189 (199)
+.+..++.-+.+--+-+.++=+++=+=.++-+.|.+.|.....+|+..+++.
T Consensus 12 ~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkm 63 (91)
T 3hd7_A 12 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 63 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777766666666666666666677788888888888888888764
No 36
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=47.80 E-value=49 Score=20.72 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=37.9
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHH
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQ 181 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~ 181 (199)
+.+.++...+.|+.+++.+==.-|.+-|+-||.+....+.-...
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 53 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLD 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 67899999999999999998889999999999988776655544
No 37
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=46.45 E-value=24 Score=18.37 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.0
Q ss_pred hhhHHHHHHHhHHHHHHHHHhh
Q psy130 136 EADAMTKIQEELDETKIILHNT 157 (199)
Q Consensus 136 ~~dkl~~i~~~v~evk~iM~~N 157 (199)
..+++.-++..++|-++|..++
T Consensus 4 ~~sKm~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 4 TASKMKLLKKKIEEQREILQKT 25 (29)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHh
Confidence 3589999999999999998876
No 38
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=45.02 E-value=54 Score=20.42 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=42.6
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKT 188 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~ 188 (199)
..+..+.+.+.+-.+-+.+.-+++=.=.++-+.|.+.+++.+.+|..++++
T Consensus 11 ~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~K 61 (63)
T 1urq_A 11 GAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLK 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777788888888888888888888888899999999999999888764
No 39
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=42.68 E-value=60 Score=20.22 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=38.4
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHH
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQS 182 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s 182 (199)
+.+.++...+.|+.+++.+==.-|.+-|+-||.+....+.-....
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v 56 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 56 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 678999999999999999988899999999999987766655443
No 40
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=41.46 E-value=61 Score=20.02 Aligned_cols=46 Identities=9% Similarity=0.299 Sum_probs=38.8
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHH
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSK 183 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~ 183 (199)
..+.+++..+.|+.+++.+==.-|-+-|+-||.+....+.-.....
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~ 54 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQ 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999888899999999999877666555433
No 41
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=36.01 E-value=83 Score=20.73 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=46.2
Q ss_pred cHHHHHHhcCCchhhhHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHH
Q psy130 123 QLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSK 183 (199)
Q Consensus 123 ~l~~l~~~y~~~~~~dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~ 183 (199)
.++..+.+..+ ...+.....-.-+++.+.+...++..+..-||.|+......+.+...-+
T Consensus 13 ~l~~~~~~~~~-esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~ 72 (83)
T 1l4a_C 13 EIQQQCNQVTD-DSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMK 72 (83)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333 3457777888888999999999999999999999999988888876654
No 42
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=32.18 E-value=65 Score=20.22 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=11.9
Q ss_pred HHHhhhhHHHHHHhHHHHHHHHH
Q psy130 161 VLQRGEKLDDLVSKSEGLSMQSK 183 (199)
Q Consensus 161 iL~Rge~Le~L~~kS~~L~~~s~ 183 (199)
++++|++|..|...+......-.
T Consensus 7 LveNgekI~~L~~~v~~~e~~Q~ 29 (64)
T 3t97_C 7 LIENGEKITSLHREVEKVKLDQK 29 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444433
No 43
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=30.86 E-value=1.2e+02 Score=20.37 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=34.2
Q ss_pred HHHHHHHhHHHHHH---HHHhhHHHHHHhhhhHHHHHHhHHHHHH-HHHHHHHHhhhhhcc
Q psy130 139 AMTKIQEELDETKI---ILHNTIEAVLQRGEKLDDLVSKSEGLSM-QSKAFYKTARKTNSC 195 (199)
Q Consensus 139 kl~~i~~~v~evk~---iM~~NIdkiL~Rge~Le~L~~kS~~L~~-~s~~F~k~akkl~~c 195 (199)
+|.+++.+|.++.. -|..-|+.+|+|-..-+-.- +.|.. .|+....-+++++.|
T Consensus 3 nl~~i~~Ei~~~~~~~~~~~~~i~aiL~~~gs~~p~~---~~lEsiAAKIIkDisdkId~C 60 (95)
T 3k4t_A 3 NLNQIQKEVSEILSDQKSMKADIKAILELLGSQNPIK---ESLETVAAKIVNDLTKLINDC 60 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHH---HHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch---hhHHHHHHHHHHHHHHHHhcC
Confidence 57888888888764 56778888888754333222 22222 356666667777765
No 44
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=30.15 E-value=51 Score=21.17 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.5
Q ss_pred HHhHHHHHHHHHhhHHHHHHhhh
Q psy130 144 QEELDETKIILHNTIEAVLQRGE 166 (199)
Q Consensus 144 ~~~v~evk~iM~~NIdkiL~Rge 166 (199)
..+++++++|+..|+.++=+|.-
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~~ 28 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRLR 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 46789999999999999987753
No 45
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=29.82 E-value=66 Score=20.81 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=31.6
Q ss_pred ccHHHHHHhcCCch-hhhHHHHHHHhHHHHHHHHHhhHHHHHHh
Q psy130 122 PQLPQYLARYQNPR-EADAMTKIQEELDETKIILHNTIEAVLQR 164 (199)
Q Consensus 122 ~~l~~l~~~y~~~~-~~dkl~~i~~~v~evk~iM~~NIdkiL~R 164 (199)
+..+..+++|+.++ ..+...++++=++....-=..||.++|++
T Consensus 21 ~~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 21 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35788899998764 45677777777777767777777777764
No 46
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=28.82 E-value=59 Score=20.58 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=31.1
Q ss_pred ccHHHHHHhcCCch-hhhHHHHHHHhHHHHHHHHHhhHHHHHHh
Q psy130 122 PQLPQYLARYQNPR-EADAMTKIQEELDETKIILHNTIEAVLQR 164 (199)
Q Consensus 122 ~~l~~l~~~y~~~~-~~dkl~~i~~~v~evk~iM~~NIdkiL~R 164 (199)
+..+..+++|+.++ ..+...++++=++....-=..||.++|++
T Consensus 19 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~k 62 (70)
T 1utg_A 19 SSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35788899998764 45677777777776666667777777764
No 47
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=28.45 E-value=1.2e+02 Score=19.55 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=36.8
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHH
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQ 181 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~ 181 (199)
..+.++...+.|+.+++.+==.-|-+-|+-||.+....+.-...
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 64 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 67999999999999999998888999999999887666554443
No 48
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=28.25 E-value=1.2e+02 Score=23.43 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=28.7
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhh
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTAR 190 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~ak 190 (199)
+...++...++++++.+..| ..+.+..+.+.|...+..+...+-
T Consensus 172 ~~k~~i~~~l~~~~~~L~~~---------~~~~i~~~~~~L~~~~~~i~~~~~ 215 (219)
T 4e81_A 172 DDKTAIESALTALETALKGE---------DKAAIEAKMQELAQVSQKLMEIAQ 215 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHSS---------CHHHHHHHHHHHHHHTHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666554 467778888888877777665543
No 49
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=27.85 E-value=1.3e+02 Score=21.33 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=30.1
Q ss_pred HHHHHHHhHHHHHHHHH---hhHHHHHHhhhhHHHHHHhHHHHHH-HHHHHHHHhhhhhcc
Q psy130 139 AMTKIQEELDETKIILH---NTIEAVLQRGEKLDDLVSKSEGLSM-QSKAFYKTARKTNSC 195 (199)
Q Consensus 139 kl~~i~~~v~evk~iM~---~NIdkiL~Rge~Le~L~~kS~~L~~-~s~~F~k~akkl~~c 195 (199)
+|.+++.+++|++.-.. .-|+.+|++-..-+.. ++.|.. .|+....-+++++.|
T Consensus 3 nl~~i~~ei~e~~~~i~~l~~~Ik~il~~~~st~~~---~~~lEsiAAKIIkDisdkId~C 60 (129)
T 3f6n_A 3 NLNQIQKEVSEILSDQKSMKADIKAILELLGSQNPI---KESLETVAAKIVNDLTKLINDC 60 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCH---HHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHHHHHHHHHHhcC
Confidence 46677777777766543 3444555443332111 233433 366777778888876
No 50
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=26.20 E-value=1.1e+02 Score=18.19 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=34.2
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHH
Q psy130 142 KIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSK 183 (199)
Q Consensus 142 ~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~ 183 (199)
....-+.|+.++-...+..+-+.||.|+.....-++.....+
T Consensus 4 ~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~ 45 (54)
T 1nhl_A 4 RILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMR 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHH
Confidence 345667889999999999999999999988887777766544
No 51
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=24.19 E-value=30 Score=22.84 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=10.1
Q ss_pred HhhhhHHHHHHhHHHHHHHHHHHHHHhhhh
Q psy130 163 QRGEKLDDLVSKSEGLSMQSKAFYKTARKT 192 (199)
Q Consensus 163 ~Rge~Le~L~~kS~~L~~~s~~F~k~akkl 192 (199)
+.|+..+...++-+.+.+..++|.+.++++
T Consensus 6 ~k~~~~~~~~d~~~~~~e~~~~f~kd~~rv 35 (80)
T 2ww9_B 6 EKGEEKKQSNNQVEKLVEAPVEFVREGTQF 35 (80)
T ss_dssp ---------------CCHHHHHHHHHHHHH
T ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566666667777777664
No 52
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=24.15 E-value=2.2e+02 Score=21.99 Aligned_cols=49 Identities=12% Similarity=0.145 Sum_probs=28.7
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHH
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFY 186 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~ 186 (199)
.....+...++++..+..+|-..+=+-....+.|.+.++.|......|+
T Consensus 175 ~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~L~~~a~~L~~~v~~Fk 223 (227)
T 1qu7_A 175 RGIDQVGLAVAEMDRVTQQNAALVEQSAAAAAALEEQASRLTEAVAVFR 223 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555566666666666655554445555566666666666666664
No 53
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=22.65 E-value=1.8e+02 Score=19.47 Aligned_cols=52 Identities=4% Similarity=0.059 Sum_probs=42.5
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHh
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTA 189 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~a 189 (199)
+.+..++.-+.+..+-+.+.=+++=+=.++-+.|.+.|.....+|...+++.
T Consensus 37 ~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkm 88 (96)
T 1sfc_A 37 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777777777777777777788889999999999999888775
No 54
>1gzs_B SOPE; toxin/cell cycle, complex (toxin/cell cycle protein), SOPE, CDC42, salmonella typhimurium, GEF, toxin, lipoprotein; 2.3A {Salmonella typhimurium} SCOP: a.168.1.1 PDB: 1r9k_A 1r6e_A
Probab=22.55 E-value=78 Score=23.14 Aligned_cols=47 Identities=21% Similarity=0.332 Sum_probs=32.2
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhcccc
Q psy130 149 ETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNSCCS 197 (199)
Q Consensus 149 evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~cc~ 197 (199)
.||+.|.+.++.+=-||.-..+=+=........-...+..+|+ +||.
T Consensus 7 ~VK~fmlq~L~sldi~g~a~kDp~yarQt~Ea~lsavyS~~Kd--~~c~ 53 (165)
T 1gzs_B 7 VVKDFMLQTLNDIDIRGSASKDPAYASQTREAILSAVYSKNKD--QCCN 53 (165)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHhhcccCccccChHHHHHHHHHHHHHHHHHhHH--HHHH
Confidence 5888888888887777776666655555555555556666655 6885
No 55
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=21.86 E-value=79 Score=21.26 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=31.7
Q ss_pred ccHHHHHHhcCCch-hhhHHHHHHHhHHHHHHHHHhhHHHHHHh
Q psy130 122 PQLPQYLARYQNPR-EADAMTKIQEELDETKIILHNTIEAVLQR 164 (199)
Q Consensus 122 ~~l~~l~~~y~~~~-~~dkl~~i~~~v~evk~iM~~NIdkiL~R 164 (199)
+..+..+++|+.++ ..+...++++=+++...-=..||.++|++
T Consensus 40 ~~Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 40 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp SHHHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 36788899998765 44677778877777777777777777763
No 56
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=21.74 E-value=1.5e+02 Score=18.97 Aligned_cols=52 Identities=4% Similarity=0.051 Sum_probs=39.8
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHh
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTA 189 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k~a 189 (199)
+.+..++.-+.+.-+-+.+.=+++=.=.++-+.|.+.|.....+|...+++.
T Consensus 22 ~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~ 73 (80)
T 1l4a_A 22 AQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKF 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777766666666777788888999999999887764
No 57
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=20.52 E-value=2.1e+02 Score=19.51 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=27.3
Q ss_pred hHHHHHHHhHHHHHHHHHhhHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH
Q psy130 138 DAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYK 187 (199)
Q Consensus 138 dkl~~i~~~v~evk~iM~~NIdkiL~Rge~Le~L~~kS~~L~~~s~~F~k 187 (199)
+...+|+..|++++..+..| .....+.+..+.+.|...+..|..
T Consensus 46 eek~~I~~~i~el~~~L~~~------~~ad~e~ik~k~~eL~~~~~~i~~ 89 (120)
T 2p32_A 46 EDKKKIEDKCDEILKWLDSN------QTAEKEEFEHQQKDLEGLANPIIS 89 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC------CcCCHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777766655321 001567778888888877776654
No 58
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=20.03 E-value=1.1e+02 Score=18.53 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=17.7
Q ss_pred hhHHHHHHHhHHHHHHHHHhh
Q psy130 137 ADAMTKIQEELDETKIILHNT 157 (199)
Q Consensus 137 ~dkl~~i~~~v~evk~iM~~N 157 (199)
.+.+..++++++.+.++..+|
T Consensus 6 ~~sl~~l~~ql~sla~vvlQN 26 (53)
T 1y4m_A 6 AKALTTMQEQIDSLAAVVLQN 26 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 368889999999999888777
Done!