RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy130
(199 letters)
>gnl|CDD|227472 COG5143, SNC1, Synaptobrevin/VAMP-like protein [Intracellular
trafficking and secretion].
Length = 190
Score = 132 bits (333), Expect = 4e-39
Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 8/178 (4%)
Query: 20 LKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSIKEGEYMCHVFVRGDNLAGI 79
L + L SFSFF R V+E + F+SKT ASR SI+ G+Y H + +
Sbjct: 17 LSDAESLSSFSFFHRSKVKEVLRFLSKTS------ASRASIESGDYFFHYLKMSSGIVYV 70
Query: 80 LVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISFPQLPQYLAR-YQNPREAD 138
+SD+EYP+++A+ + ++ EF K+ T I + + + + Y++P D
Sbjct: 71 PISDKEYPNKLAYGYLNSIATEFLKSSALEQLIDDTV-GIMRVNIDKVIEKGYRDPSIQD 129
Query: 139 AMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNSCC 196
+ ++Q+EL+ETK +L+ IE VL R EKLD LV S L + SK F K+A+K+N CC
Sbjct: 130 KLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSNLCC 187
>gnl|CDD|201526 pfam00957, Synaptobrevin, Synaptobrevin.
Length = 89
Score = 73.3 bits (181), Expect = 2e-17
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 136 EADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARK 191
D + KIQ ++DE K I+ I+ VL+RGEKLD LV K+E L ++ F K ARK
Sbjct: 1 SNDKLNKIQAQVDEVKDIMTENIDKVLERGEKLDLLVDKTENLQSSAQQFRKQARK 56
>gnl|CDD|222370 pfam13774, Longin, Regulated-SNARE-like domain. Longin is one of
the approximately 26 components required for
transporting proteins from the ER to the plasma
membrane, via the Golgi apparatus. It is necessary for
the steps of the transfer from the ER to the Golgi
complex. Longins are the only R-SNAREs that are common
to all eukaryotes, and they are characterized by a
conserved N-terminal domain with a profilin-like fold
called a longin domain.
Length = 82
Score = 69.1 bits (170), Expect = 6e-16
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 44 VSKTMVER-SQTASRQSIKEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEF 102
V+KT++E+ + RQS +EG Y H V D L + ++D+EYP R+A + + +EF
Sbjct: 1 VAKTILEKLPPNSPRQSYEEGNYTFHYLVE-DGLCYLCIADKEYPRRLAFAFLEEIKDEF 59
Query: 103 SKAVPPSSWPTGTEASISFPQLPQY 127
K S T + +FP+ +
Sbjct: 60 LKKYGGSQAA--TASPYAFPEFDTF 82
>gnl|CDD|193547 cd05672, M20_ACY1L2_like, M20 Peptidase Aminoacylase 1-like protein
2-like, amidohydrolase subfamily. Peptidase M20 family,
Aminoacylase 1-like protein 2 (ACY1L2;
amidohydrolase)-like subfamily. This group contains many
uncharacterized proteins predicted as amidohydrolases,
including gene products of abgA and abgB that catalyze
the cleavage of p-aminobenzoyl-glutamate, a folate
catabolite in Escherichia coli , to p-aminobenzoate and
glutamate. p-Aminobenzoyl-glutamate utilization is
catalyzed by the abg region gene product, AbgT.
Aminoacylase 1 (ACY1) proteins are a class of zinc
binding homodimeric enzymes involved in hydrolysis of
N-acetylated proteins. N-terminal acetylation of
proteins is a widespread and highly conserved process
that is involved in the protection and stability of
proteins. Several types of aminoacylases can be
distinguished on the basis of substrate specificity.
ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino
acids (except L-aspartate), especially
N-acetyl-methionine and acetyl-glutamate into L-amino
acids and an acyl group. However, ACY1 can also catalyze
the reverse reaction, the synthesis of acetylated amino
acids. ACY1 may also play a role in xenobiotic
bioactivation as well as the inter-organ processing of
amino acid-conjugated xenobiotic derivatives
(S-substituted-N-acetyl-L-cysteine).
Length = 358
Score = 30.9 bits (71), Expect = 0.40
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 113 TGTEASISFPQLPQYLARYQNPREADAMTKIQEELDETKI 152
TG I + P Y N A+ + EEL I
Sbjct: 254 TGCTVEIEEYEPP-YDDLVPNKTLAELFAENLEELGIEDI 292
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 28.8 bits (65), Expect = 1.8
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 118 SISFPQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAVL----QRGEKLDDLVS 173
S + + P L ++P + + Q + K L +E +L Q +L L +
Sbjct: 106 SQAAIEFPDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQA 165
Query: 174 KSEGLSMQSK 183
+ + L Q +
Sbjct: 166 QLQALRQQLE 175
>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional.
Length = 447
Score = 27.8 bits (62), Expect = 3.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 137 ADAMTKIQEELDETKIILHNTIEAVLQRGEK 167
A MT ELDE I ++E ++Q+G
Sbjct: 414 APPMTITYSELDELLSIFAKSVEEMMQKGGH 444
>gnl|CDD|219917 pfam08584, Ribonuc_P_40, Ribonuclease P 40kDa (Rpp40) subunit. The
tRNA processing enzyme ribonuclease P (RNase P) consists
of an RNA molecule and at least eight protein subunits.
Subunits hpop1, Rpp21, Rpp29, Rpp30, Rpp38, and Rpp40
(this entry) are involved in extensive, but weak,
protein-protein interactions in the holoenzyme complex.
Length = 283
Score = 27.7 bits (62), Expect = 4.4
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 110 SWPTGTEASISFPQLPQYLARYQNPREADAMTKIQEELD 148
+W P YL++Y+ P E E +
Sbjct: 108 AWLNSGSGGSDNRPGPSYLSKYK-PTEHKTEVSTTELRN 145
>gnl|CDD|187684 cd09626, DOMON_glucodextranase_like, DOMON-like domain of various
glycoside hydrolases. This DOMON-like domain is found
at the C-terminus of various bacterial proteins that
play roles in metabolizing carbohydrates, such as
glucodextranase (hydrolyzes alpha-1,6-glucosidic
linkages of dextran from the non-reducing end), glucan
alpha-1,4-glucosidase, pullulanase (degrades pullulan,
a polysaccharide built from maltotriose units),
arabinogalactan endo-1,4-beta-galactosidase, and
others. Consequently, the DOMON-like domains in this
family co-occur with catalytic domains from various
glycosyl hydrolase families. The precise function of
the DOMON domains in these proteins is not clear, they
may be involved in interactions with carbohydrates.
Length = 220
Score = 26.9 bits (60), Expect = 5.8
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 11 YKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFV 44
Y PT V ++DL F+ ++ G + F
Sbjct: 17 YTYPTDPVFKPGAFDLTGFTVYEAG---DKYRFR 47
>gnl|CDD|237205 PRK12792, flhA, flagellar biosynthesis protein FlhA; Reviewed.
Length = 694
Score = 27.4 bits (61), Expect = 6.4
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 50 ERSQTASRQSIKEGEYMCHVFVR-GDNLAGILV-SDQEYPHRVA 91
E +Q ++ S+KE + + G LA L + E HRVA
Sbjct: 343 ESAQAEAKDSVKEQLRTAEIELCLGKQLAAQLQGAHAELAHRVA 386
>gnl|CDD|193508 cd03887, M20_Acy1L2, M20 Peptidase Aminoacylase 1-like protein 2,
amidohydrolase family. Peptidase M20 family,
Aminoacylase 1-like protein 2 (ACY1L2; amidohydrolase)
subfamily. This group contains many uncharacterized
proteins predicted as amidohydrolases, including gene
products of abgA and abgB that catalyze the cleavage of
p-aminobenzoyl-glutamate, a folate catabolite in
Escherichia coli, to p-aminobenzoate and glutamate.
p-Aminobenzoyl-glutamate utilization is catalyzed by the
abg region gene product, AbgT. Aminoacylase 1 (ACY1)
proteins are a class of zinc binding homodimeric enzymes
involved in hydrolysis of N-acetylated proteins.
N-terminal acetylation of proteins is a widespread and
highly conserved process that is involved in the
protection and stability of proteins. Several types of
aminoacylases can be distinguished on the basis of
substrate specificity. ACY1 breaks down cytosolic
aliphatic N-acyl-alpha-amino acids (except L-aspartate),
especially N-acetyl-methionine and acetyl-glutamate into
L-amino acids and an acyl group. However, ACY1 can also
catalyze the reverse reaction, the synthesis of
acetylated amino acids. ACY1 may also play a role in
xenobiotic bioactivation as well as the inter-organ
processing of amino acid-conjugated xenobiotic
derivatives (S-substituted-N-acetyl-L-cysteine).
Length = 358
Score = 27.1 bits (61), Expect = 6.6
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 113 TGTEASISFPQLPQYLARYQNPREADAMTKIQEELDETKII 153
TGT I Y N A+ + EEL + I
Sbjct: 256 TGTTVEIEE--DEGYYDLLPNKTLAELFRENLEELGPPEPI 294
>gnl|CDD|236087 PRK07748, PRK07748, sporulation inhibitor KapD; Provisional.
Length = 207
Score = 26.6 bits (59), Expect = 7.3
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 14/58 (24%)
Query: 98 VLNEFSKAVPPSSWPTGTEAS--------------ISFPQLPQYLARYQNPREADAMT 141
V + FS V P ++P+ TE ISF +L + LA Y + +T
Sbjct: 42 VEDTFSSYVKPKTFPSLTERCKSFLGITQEDVDKGISFEELVEKLAEYDKRCKPTIVT 99
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.129 0.362
Gapped
Lambda K H
0.267 0.0822 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,464,799
Number of extensions: 845436
Number of successful extensions: 782
Number of sequences better than 10.0: 1
Number of HSP's gapped: 778
Number of HSP's successfully gapped: 18
Length of query: 199
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 107
Effective length of database: 6,857,034
Effective search space: 733702638
Effective search space used: 733702638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)