RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy130
(199 letters)
>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 175 bits (445), Expect = 2e-57
Identities = 51/139 (36%), Positives = 85/139 (61%), Gaps = 2/139 (1%)
Query: 3 KLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSIKE 62
+++ + + A+ L DL F FF+R SV +FMTF ++T+ R+ RQSI+E
Sbjct: 2 RIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGERQSIEE 61
Query: 63 GEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEA--SIS 120
G Y+ HV+ R + + G+L++D++YP R A+TL+ +L+E+ A P W TE ++
Sbjct: 62 GNYIGHVYARSEGICGVLITDKQYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALK 121
Query: 121 FPQLPQYLARYQNPREADA 139
QL Y+++YQ+P +ADA
Sbjct: 122 MKQLDTYISKYQDPSQADA 140
>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}
Length = 127
Score = 53.2 bits (128), Expect = 4e-10
Identities = 13/87 (14%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 46 KTMVER--SQTASRQSIKEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFS 103
K + + Q+ +R +++ G H ++ + +++ + +P ++A + ++ +EF
Sbjct: 38 KQLFRKLNEQSPTRCTLEAGAMTFH-YIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFD 96
Query: 104 KAVPPSSWPTGTEASISFPQLPQYLAR 130
+ PT + SF + ++ +
Sbjct: 97 E-QHGKKVPTVSRP-YSFIEFDTFIQK 121
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 269
Score = 26.5 bits (58), Expect = 2.1
Identities = 6/57 (10%), Positives = 19/57 (33%)
Query: 123 QLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLS 179
+P Y++ P + + + + + L + +L + +S +
Sbjct: 195 HVPHYVSASPYPAATLKLLQSIADSADLNLPLLALERDAEKVHRQLMEQTEESSEIQ 251
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 99
Score = 25.6 bits (56), Expect = 2.2
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 143 IQEELDETKIILHNTI--EAVLQRGEKLDDLVSKSEGLSMQSKAFY 186
++E L+E + +L N + + Q ++LDD + +++ L + +AF
Sbjct: 16 LEEFLNEVEKMLKNQVNTRRIHQLLKELDDPLLENKDLEEKLQAFL 61
>d1wija_ a.140.5.1 (A:) Ethylene insensitive 3 (EIN3)-like protein
3, EIL3 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 127
Score = 25.6 bits (56), Expect = 2.4
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 102 FSKAVPPSSWPTGTE 116
K PP WPTG E
Sbjct: 33 LEKGTPPPWWPTGNE 47
>d1ulva3 b.1.9.3 (A:776-1020) Glucodextranase, domain C
{Arthrobacter globiformis [TaxId: 1665]}
Length = 245
Score = 25.7 bits (56), Expect = 3.6
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 11 YKAPTSAVMLKSSYDLQSFSFFQRGS 36
Y+ PT++ + ++DL + G
Sbjct: 18 YRYPTNSAYVPGAFDLTGVDVYDAGD 43
>d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 542
Score = 25.9 bits (55), Expect = 3.8
Identities = 11/48 (22%), Positives = 14/48 (29%)
Query: 102 FSKAVPPSSWPTGTEASISFPQLPQYLARYQNPREADAMTKIQEELDE 149
F P W +A+ QY+ E M EL E
Sbjct: 47 FMPPEPKRPWSGVLDATTFQNVCYQYVDTLYPGFEGTEMWNPNRELSE 94
>d1ydla1 d.295.1.1 (A:6-71) General transcription factor IIH
polypeptide 5, TFB5 {Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 23.8 bits (52), Expect = 5.4
Identities = 8/32 (25%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 143 IQEELDETKIILHNTIEAVLQRGEKLDDLVSK 174
I +++D+T + + + VLQ E++ +L+ +
Sbjct: 29 IIQDIDDTHVFVIAELVNVLQ--ERVGELMDQ 58
>d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray
(Torpedo californica) [TaxId: 7787]}
Length = 532
Score = 25.5 bits (54), Expect = 5.5
Identities = 10/48 (20%), Positives = 13/48 (27%)
Query: 102 FSKAVPPSSWPTGTEASISFPQLPQYLARYQNPREADAMTKIQEELDE 149
F + P W AS QY+ M E+ E
Sbjct: 42 FRRPEPKKPWSGVWNASTYPNNCQQYVDEQFPGFSGSEMWNPNREMSE 89
>d1dkga1 b.73.1.1 (A:139-197) Head domain of nucleotide exchange
factor GrpE {Escherichia coli [TaxId: 562]}
Length = 59
Score = 23.4 bits (51), Expect = 5.5
Identities = 5/40 (12%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 133 NPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLV 172
+P A+ ++ + + ++Q+G L+
Sbjct: 12 DPNVHQAIAMVESDDVA-----PGNVLGIMQKGYTLNGRT 46
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 146
Score = 24.5 bits (53), Expect = 7.9
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 99 LNEFSKAVPPSSWPTGTEASISFPQLPQYLARYQNPREAD----AMTKIQEELDETK 151
L + + W T + + P+ R+ N A + ++E++E +
Sbjct: 89 LKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEERE 145
>d1vpra1 b.60.1.7 (A:868-1218) Dinoflagellate luciferase
{Lingulodinium polyedrum [TaxId: 160621]}
Length = 351
Score = 24.9 bits (54), Expect = 8.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 56 SRQSIKEGEYMCHVFVRGDNLAGILVSDQEY 86
++++ K G Y V G NL G+ V +EY
Sbjct: 226 AKRTWKSGHYFYEPLVSGGNLLGVWVLPEEY 256
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.129 0.362
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 648,868
Number of extensions: 26695
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 17
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.5 bits)