BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13000
(65 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A2VDY3|CHM4A_BOVIN Charged multivesicular body protein 4a OS=Bos taurus GN=CHMP4A
PE=2 SV=1
Length = 222
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Query: 1 MSFFKNIFGK-TEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
MS +FG+ +EKGPT EAIQKL+ETE +LIKKQEFLE+KI +E+ A+ +GTKNKR
Sbjct: 1 MSGLGRLFGRGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIEQELQAAKKHGTKNKR 60
>sp|Q9BY43|CHM4A_HUMAN Charged multivesicular body protein 4a OS=Homo sapiens GN=CHMP4A
PE=1 SV=3
Length = 222
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Query: 1 MSFFKNIFGK-TEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
MS +FGK +EKGPT EAIQKL+ETE +LIKKQEFLE+KI +E+ A+ GTKNKR
Sbjct: 1 MSGLGRLFGKGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYGTKNKR 60
>sp|Q5XGW6|CHM4B_XENLA Charged multivesicular body protein 4b OS=Xenopus laevis
GN=chmp4b PE=2 SV=1
Length = 222
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Query: 1 MSFFKNIFGKTEE--KGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNK 58
MS +FG + KGP+ EAIQKLR+TE+ML KKQEFLEKKI +E+ A+ +GTKNK
Sbjct: 1 MSLIGKLFGTGGKGAKGPSPQEAIQKLRDTEEMLAKKQEFLEKKIEQELVTAKKHGTKNK 60
Query: 59 R 59
R
Sbjct: 61 R 61
>sp|Q6GL11|CHM4B_XENTR Charged multivesicular body protein 4b OS=Xenopus tropicalis
GN=chmp4b PE=2 SV=1
Length = 222
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Query: 1 MSFFKNIFGKTEE--KGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNK 58
MS +FG + KGP+ EAIQKLR+TE+ML KKQEFLEKKI +E+ A+ +GTKNK
Sbjct: 1 MSLIGKLFGTGGKGAKGPSPQEAIQKLRDTEEMLTKKQEFLEKKIEQELVTAKKHGTKNK 60
Query: 59 R 59
R
Sbjct: 61 R 61
>sp|Q6IQ73|CHM4C_DANRE Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c
PE=2 SV=1
Length = 224
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%)
Query: 16 PTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
PT EAIQKLRETE+ML KKQ+FLEKKI E+ IA+ NGTKNKR
Sbjct: 18 PTPQEAIQKLRETEEMLAKKQDFLEKKIDAELLIAKKNGTKNKR 61
>sp|Q9D8B3|CHM4B_MOUSE Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b
PE=2 SV=2
Length = 224
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 1 MSFFKNIFGKTEEKG----PTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTK 56
MS F +FG K PT EAIQ+LR+TE+ML KKQEFLEKKI +E+ A+ +GTK
Sbjct: 1 MSVFGKLFGAGGGKAGKGGPTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTK 60
Query: 57 NKR 59
NKR
Sbjct: 61 NKR 63
>sp|Q9H444|CHM4B_HUMAN Charged multivesicular body protein 4b OS=Homo sapiens GN=CHMP4B
PE=1 SV=1
Length = 224
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 1 MSFFKNIFGKTEEKG----PTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTK 56
MS F +FG K PT EAIQ+LR+TE+ML KKQEFLEKKI +E+ A+ +GTK
Sbjct: 1 MSVFGKLFGAGGGKAGKGGPTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTK 60
Query: 57 NKR 59
NKR
Sbjct: 61 NKR 63
>sp|Q5ZHP5|CHM4B_CHICK Charged multivesicular body protein 4b OS=Gallus gallus GN=CHMP4B
PE=2 SV=1
Length = 227
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 37/44 (84%)
Query: 16 PTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
P+ EAIQ+LR+TE+ML KKQEFLEKKI +E+ AR +GTKNKR
Sbjct: 22 PSPQEAIQRLRDTEEMLSKKQEFLEKKIEQELAAARKHGTKNKR 65
>sp|Q6GNN8|CHM4C_XENLA Charged multivesicular body protein 4c OS=Xenopus laevis
GN=chmp4c PE=2 SV=1
Length = 227
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 37/46 (80%)
Query: 14 KGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
KGP+ EA+ KLRETE+ML KKQE+LEKKI E+ A+ +GTKNKR
Sbjct: 22 KGPSAQEALFKLRETEEMLTKKQEYLEKKIELELATAKKHGTKNKR 67
>sp|Q7ZVC4|CHM4B_DANRE Charged multivesicular body protein 4b OS=Danio rerio GN=chmp4b
PE=2 SV=1
Length = 220
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 35/40 (87%)
Query: 20 EAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
EAIQ+LRETE+ML KKQEFLEKKI +E+ A+ NGTKNKR
Sbjct: 22 EAIQRLRETEEMLTKKQEFLEKKIEQELVTAKKNGTKNKR 61
>sp|Q9D7F7|CHM4C_MOUSE Charged multivesicular body protein 4c OS=Mus musculus GN=Chmp4c
PE=2 SV=1
Length = 232
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 3 FFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
FFK P+ EA+ +LRETE+ML KKQE+LE +I E+ +A+ +G++NKR
Sbjct: 7 FFKGTRSSRARAAPSAQEALARLRETEEMLAKKQEYLENRIQRELALAKKHGSQNKR 63
>sp|Q96CF2|CHM4C_HUMAN Charged multivesicular body protein 4c OS=Homo sapiens GN=CHMP4C
PE=1 SV=1
Length = 233
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 3 FFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
FFK P+ EA+ +LRETE+ML KKQE+LE +I EI +A+ +GT+NKR
Sbjct: 7 FFKGGGSSKSRAAPSPQEALVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQNKR 63
>sp|Q569C1|CHM4C_RAT Charged multivesicular body protein 4c OS=Rattus norvegicus
GN=Chmp4c PE=2 SV=1
Length = 232
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 3 FFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
FFK P+ EA+ +LRE E+M+ KKQE+LE +I E+ +A+ +G++NKR
Sbjct: 7 FFKGSRSSRARAAPSAQEALARLREIEEMMAKKQEYLENRIQRELALAKKHGSQNKR 63
>sp|P0CR54|SNF7_CRYNJ Vacuolar-sorting protein SNF7 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SNF7 PE=3 SV=1
Length = 220
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 1 MSFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
MS + + F ++ + +AI LR+ ML KK+EFL+KKI EE+ A+ N T NKR
Sbjct: 1 MSGWMSYFTGRKDTRESARDAIVGLRQQLLMLEKKEEFLQKKIEEEMKKAKANATGNKR 59
>sp|P0CR55|SNF7_CRYNB Vacuolar-sorting protein SNF7 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=SNF7 PE=3
SV=1
Length = 220
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 1 MSFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
MS + + F ++ + +AI LR+ ML KK+EFL+KKI EE+ A+ N T NKR
Sbjct: 1 MSGWMSYFTGRKDTRESARDAIVGLRQQLLMLEKKEEFLQKKIEEEMKKAKANATGNKR 59
>sp|Q9P7F7|SNF7_SCHPO Vacuolar-sorting protein snf7 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=snf7 PE=3 SV=1
Length = 222
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 1 MSFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
MS F FG K TT + I + +E + KK+E LE++I E+ IAR N T NKR
Sbjct: 1 MSGFLRWFGGNRSKD-TTKDTIVRFQEMLALYDKKEEVLERQIAEQTEIARKNATTNKR 58
>sp|Q5B5E0|SNF7_EMENI Vacuolar-sorting protein snf7 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=snf7
PE=1 SV=1
Length = 242
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 2 SFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNK 58
S+F + ++ P AI +LR DML K+++ LE ++ E+ IA+ N T NK
Sbjct: 3 SWFGGAAAQKRKEAPKN--AILQLRSHLDMLQKREKHLENQMNEQEAIAKKNVTTNK 57
>sp|Q86H98|CHMP4_DICDI Charged multivesicular body protein 4 OS=Dictyostelium discoideum
GN=chmp4 PE=3 SV=1
Length = 215
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 7 IFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIART-NGTKNKRE 60
+FGK + K T E I KLR T DML K+Q FL+ K+ +E A+ K KRE
Sbjct: 3 LFGKPKPKQ-DTQETIGKLRLTLDMLEKRQTFLQDKLEKEQEKAKVLVSQKRKRE 56
>sp|A4YJT5|MNME_BRASO tRNA modification GTPase MnmE OS=Bradyrhizobium sp. (strain ORS278)
GN=mnmE PE=3 SV=1
Length = 444
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 1 MSFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFL---EKKIGEEINIA 50
+ F +N FG TE T Q LR+T D L + + + E+ + EE+ IA
Sbjct: 364 VGFARNFFGSTESGLITRERQRQSLRQTADALQRSLDTVDLGEELVAEELRIA 416
>sp|Q871Y8|SNF7_NEUCR Vacuolar-sorting protein snf-7 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=snf-7 PE=3 SV=1
Length = 228
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 21 AIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNK 58
AI LR DML K++ L+ +I E+ IAR N + NK
Sbjct: 24 AILGLRTQLDMLQKRERHLQNQIDEQDAIARKNVSTNK 61
>sp|O88738|BIRC6_MOUSE Baculoviral IAP repeat-containing protein 6 OS=Mus musculus GN=Birc6
PE=1 SV=2
Length = 4882
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 1 MSFFKNIFGKTEEK-GPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
+S G+ EEK P T +Q L + +++ + + + G E + +GT++ R
Sbjct: 4692 LSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEP-GYERSRGTPSGTQSSR 4750
Query: 60 EFDHN 64
E+D N
Sbjct: 4751 EYDGN 4755
>sp|Q9NR09|BIRC6_HUMAN Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6
PE=1 SV=2
Length = 4857
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 1 MSFFKNIFGKTEEK-GPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKR 59
+S G+ EEK P T +Q L + +++ + + + G E + +GT++ R
Sbjct: 4667 LSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEP-GYERSRGTPSGTQSSR 4725
Query: 60 EFDHN 64
E+D N
Sbjct: 4726 EYDGN 4730
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.131 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,731,748
Number of Sequences: 539616
Number of extensions: 817987
Number of successful extensions: 2596
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2571
Number of HSP's gapped (non-prelim): 37
length of query: 65
length of database: 191,569,459
effective HSP length: 37
effective length of query: 28
effective length of database: 171,603,667
effective search space: 4804902676
effective search space used: 4804902676
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)