Query psy13000
Match_columns 65
No_of_seqs 110 out of 196
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 16:38:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4abm_A Charged multivesicular 99.7 4.4E-17 1.5E-21 99.4 5.7 49 15-63 1-49 (79)
2 1aq5_A Matrilin-1, CMP, cartil 80.7 4 0.00014 22.4 4.5 27 17-43 20-46 (47)
3 2kxo_A Cell division topologic 80.0 0.33 1.1E-05 29.8 -0.1 10 1-10 1-10 (95)
4 2gd5_A Charged multivesicular 79.5 7.3 0.00025 25.2 6.3 47 7-54 2-51 (179)
5 3grl_A General vesicular trans 75.2 1.6 5.3E-05 34.6 2.4 40 1-40 1-44 (651)
6 3htu_B Vacuolar protein-sortin 72.1 6.6 0.00023 20.5 3.7 33 18-50 7-39 (39)
7 2l5g_B Putative uncharacterize 65.5 9.3 0.00032 20.5 3.5 19 22-40 18-36 (42)
8 1a93_A Coiled coil, LZ, MYC pr 62.8 14 0.00047 18.9 4.0 25 21-45 8-32 (34)
9 2yy0_A C-MYC-binding protein; 56.6 17 0.00059 19.7 3.7 40 2-45 5-44 (53)
10 3k29_A Putative uncharacterize 45.6 43 0.0015 22.5 4.9 30 17-46 68-97 (169)
11 2w84_A Peroxisomal membrane pr 44.7 15 0.00051 21.5 2.2 23 32-54 35-59 (70)
12 1fxk_C Protein (prefoldin); ar 36.9 66 0.0023 19.3 4.5 29 17-45 85-113 (133)
13 3e98_A GAF domain of unknown f 32.9 66 0.0022 21.9 4.4 33 22-54 66-99 (252)
14 3ff5_A PEX14P, peroxisomal bio 32.8 31 0.0011 19.0 2.2 19 32-50 30-50 (54)
15 3mud_A DNA repair protein XRCC 31.4 1.2E+02 0.004 20.3 5.6 36 13-48 117-156 (175)
16 3lcn_C MRNA transport factor G 29.8 56 0.0019 16.1 2.9 15 36-50 8-22 (29)
17 1upk_A MO25 protein; transfera 29.3 1.7E+02 0.0057 21.4 6.3 24 8-34 5-28 (341)
18 1nkp_A C-MYC, MYC proto-oncoge 27.7 94 0.0032 18.0 4.7 14 31-44 70-83 (88)
19 2pnv_A Small conductance calci 27.0 75 0.0026 16.7 4.5 28 19-46 8-35 (43)
20 2zdi_C Prefoldin subunit alpha 26.7 1.2E+02 0.004 18.7 4.5 29 17-45 95-123 (151)
21 3i00_A HIP-I, huntingtin-inter 25.2 1.3E+02 0.0044 18.7 4.4 24 15-38 9-33 (120)
22 3rrk_A V-type ATPase 116 kDa s 23.4 1.8E+02 0.0062 19.8 6.2 33 17-49 223-255 (357)
23 1nkp_B MAX protein, MYC proto- 23.1 1.1E+02 0.0037 17.1 4.1 24 20-43 47-70 (83)
24 1rtm_1 Mannose-binding protein 22.6 1.1E+02 0.0038 17.9 3.6 21 25-45 2-22 (149)
25 2k19_A Putative piscicolin 126 21.9 18 0.00061 22.4 -0.1 28 1-29 1-28 (98)
26 3lpz_A GET4 (YOR164C homolog); 21.6 20 0.00067 26.0 0.0 11 1-11 305-315 (336)
27 3nmd_A CGMP dependent protein 20.8 1.3E+02 0.0046 17.4 5.9 34 19-52 25-58 (72)
28 2jtt_C Calcyclin-binding prote 20.8 49 0.0017 16.7 1.5 21 1-24 9-29 (35)
29 1zme_C Proline utilization tra 20.6 67 0.0023 16.8 2.1 26 18-43 42-67 (70)
30 2aze_B Transcription factor E2 20.4 1.5E+02 0.0052 17.8 4.7 24 22-45 8-31 (106)
31 3ghg_A Fibrinogen alpha chain; 20.1 2E+02 0.007 22.6 5.4 16 32-47 115-130 (562)
No 1
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=99.68 E-value=4.4e-17 Score=99.35 Aligned_cols=49 Identities=59% Similarity=0.798 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhh
Q psy13000 15 GPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNGTKNKREFDH 63 (65)
Q Consensus 15 ~~~~~~aI~kLret~emL~KKe~~LekkI~~E~~~AKk~~~kNKr~Al~ 63 (65)
+|||.+||.+||++++||+|+++||+++|++|++.||+++++||++|++
T Consensus 1 ~p~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~~knK~~Al~ 49 (79)
T 4abm_A 1 GAMEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQ 49 (79)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 5899999999999999999999999999999999999999999999985
No 2
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=80.65 E-value=4 Score=22.38 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13000 17 TTGEAIQKLRETEDMLIKKQEFLEKKI 43 (65)
Q Consensus 17 ~~~~aI~kLret~emL~KKe~~LekkI 43 (65)
++.++|+.|-..++-+.+|-+.||.+|
T Consensus 20 ~v~~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 20 KVEELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 367889999999999999999999886
No 3
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=80.03 E-value=0.33 Score=29.79 Aligned_cols=10 Identities=40% Similarity=0.893 Sum_probs=9.1
Q ss_pred CchhhhhhcC
Q psy13000 1 MSFFKNIFGK 10 (65)
Q Consensus 1 Ms~~~~~FG~ 10 (65)
||+|..|||+
T Consensus 1 M~l~~~f~~k 10 (95)
T 2kxo_A 1 MSLIELLFGR 10 (95)
T ss_dssp CCHHHHHTCS
T ss_pred CchHHHhccC
Confidence 8999999996
No 4
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=79.47 E-value=7.3 Score=25.22 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=30.6
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Q psy13000 7 IFGKTEEKGPTTGEAIQKLRETEDMLIKKQ---EFLEKKIGEEINIARTNG 54 (65)
Q Consensus 7 ~FG~~~~~~~~~~~aI~kLret~emL~KKe---~~LekkI~~E~~~AKk~~ 54 (65)
+|+ ++++++...+++..||-+..-|++-- +..|+++..++..|.+.+
T Consensus 2 ~~~-~~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g 51 (179)
T 2gd5_A 2 AMA-EKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKG 51 (179)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455 34567778888889998877776644 455677778887777765
No 5
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=75.25 E-value=1.6 Score=34.62 Aligned_cols=40 Identities=25% Similarity=0.433 Sum_probs=18.5
Q ss_pred CchhhhhhcCCC-CCCCCHHHHHHHHHHHHH---HHHHHHHHHH
Q psy13000 1 MSFFKNIFGKTE-EKGPTTGEAIQKLRETED---MLIKKQEFLE 40 (65)
Q Consensus 1 Ms~~~~~FG~~~-~~~~~~~~aI~kLret~e---mL~KKe~~Le 40 (65)
|++|..+||+.+ +.++++.|+|.+|-+-++ +++-|.+.+.
T Consensus 1 m~~~~~~~g~~~~~~~qs~~etI~~L~~Rl~~~tl~eDRR~Av~ 44 (651)
T 3grl_A 1 MNFLRGVMGGQSAGPQHTEAETIQKLCDRVASSTLLDDRRNAVR 44 (651)
T ss_dssp -----------------CHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred ChHHHhhhCCCCCCCCCChhhHHHHHHHHHhhccchhHHHHHHH
Confidence 899999999753 567899999999988776 5666666553
No 6
>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=72.13 E-value=6.6 Score=20.55 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13000 18 TGEAIQKLRETEDMLIKKQEFLEKKIGEEINIA 50 (65)
Q Consensus 18 ~~~aI~kLret~emL~KKe~~LekkI~~E~~~A 50 (65)
...||..|..+-+-|..-+.-++..|+.|-+.|
T Consensus 7 qDrAIL~LK~QRDkL~qyqkri~~~~~rE~eiA 39 (39)
T 3htu_B 7 QDKAILQLKQQRDKLRQYQKRIAQQLERERALA 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Confidence 456999999999999999999999999887765
No 7
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=65.47 E-value=9.3 Score=20.52 Aligned_cols=19 Identities=37% Similarity=0.363 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13000 22 IQKLRETEDMLIKKQEFLE 40 (65)
Q Consensus 22 I~kLret~emL~KKe~~Le 40 (65)
|.+-++.+.+|.+|+.-||
T Consensus 18 I~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 18 ITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554
No 8
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=62.77 E-value=14 Score=18.91 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13000 21 AIQKLRETEDMLIKKQEFLEKKIGE 45 (65)
Q Consensus 21 aI~kLret~emL~KKe~~LekkI~~ 45 (65)
==.+|..--|-|.+|+++|-.+|+.
T Consensus 8 dE~kLl~ekE~l~~r~eqL~~kLe~ 32 (34)
T 1a93_A 8 EEQKLISEEDLLRKRREQLKHKLEQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888889999999999999874
No 9
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=56.55 E-value=17 Score=19.73 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=13.5
Q ss_pred chhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13000 2 SFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGE 45 (65)
Q Consensus 2 s~~~~~FG~~~~~~~~~~~aI~kLret~emL~KKe~~LekkI~~ 45 (65)
.++....|+. .+.++.. ..|+...+-|..|=+-|..++++
T Consensus 5 efIk~~LG~~-~p~~~d~---eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 5 DFLKHHLGAA-TPENPEI---ELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp ------------CCCHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC-CCChhhH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666641 1223333 44555555555555555554443
No 10
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=45.58 E-value=43 Score=22.54 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13000 17 TTGEAIQKLRETEDMLIKKQEFLEKKIGEE 46 (65)
Q Consensus 17 ~~~~aI~kLret~emL~KKe~~LekkI~~E 46 (65)
++.++|..++.-|.+|.-|+..|+.+++++
T Consensus 68 tt~~~i~~m~~yI~llrErea~lEqkVaeq 97 (169)
T 3k29_A 68 TTSDAILKMKAYIKVVAIQLSEEEEKVNKQ 97 (169)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999764
No 11
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=44.69 E-value=15 Score=21.50 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHhc
Q psy13000 32 LIKKQEFLEKKI--GEEINIARTNG 54 (65)
Q Consensus 32 L~KKe~~LekkI--~~E~~~AKk~~ 54 (65)
|++|.+||+.|= ++|+..|=+-+
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 789999999986 67777665543
No 12
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=36.87 E-value=66 Score=19.26 Aligned_cols=29 Identities=7% Similarity=0.210 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13000 17 TTGEAIQKLRETEDMLIKKQEFLEKKIGE 45 (65)
Q Consensus 17 ~~~~aI~kLret~emL~KKe~~LekkI~~ 45 (65)
+..+|+.-|...++.|++.-+.|++.++.
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~ 113 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMGENLRA 113 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778887777777777777666665544
No 13
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=32.94 E-value=66 Score=21.88 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=26.8
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13000 22 IQKLRE-TEDMLIKKQEFLEKKIGEEINIARTNG 54 (65)
Q Consensus 22 I~kLre-t~emL~KKe~~LekkI~~E~~~AKk~~ 54 (65)
++.|.| +++.|..|-..||.+|.+=++.|+.|-
T Consensus 66 aVSL~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne 99 (252)
T 3e98_A 66 AVSLVERQVRLLRERNIEMRHRLSQLMDVAREND 99 (252)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443 688899999999999999999999987
No 14
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=32.79 E-value=31 Score=19.05 Aligned_cols=19 Identities=47% Similarity=0.707 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHH--HHHHHHH
Q psy13000 32 LIKKQEFLEKKI--GEEINIA 50 (65)
Q Consensus 32 L~KKe~~LekkI--~~E~~~A 50 (65)
+.+|.+||+.|= ++|+..|
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~A 50 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLA 50 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 678999999875 5555544
No 15
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=31.36 E-value=1.2e+02 Score=20.33 Aligned_cols=36 Identities=28% Similarity=0.263 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy13000 13 EKGPTTGEAIQKLR----ETEDMLIKKQEFLEKKIGEEIN 48 (65)
Q Consensus 13 ~~~~~~~~aI~kLr----et~emL~KKe~~LekkI~~E~~ 48 (65)
...++|.++|..|= .+...|++.-++||.++..+-.
T Consensus 117 k~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKe 156 (175)
T 3mud_A 117 EKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKE 156 (175)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999888764 3556777777888777655443
No 16
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=29.82 E-value=56 Score=16.09 Aligned_cols=15 Identities=40% Similarity=0.525 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy13000 36 QEFLEKKIGEEINIA 50 (65)
Q Consensus 36 e~~LekkI~~E~~~A 50 (65)
-+.|.++|++|-++-
T Consensus 8 m~lLKKKIEEQr~i~ 22 (29)
T 3lcn_C 8 MKLLKKKIEEQREIL 22 (29)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356667777765543
No 17
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=29.31 E-value=1.7e+02 Score=21.40 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=16.9
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy13000 8 FGKTEEKGPTTGEAIQKLRETEDMLIK 34 (65)
Q Consensus 8 FG~~~~~~~~~~~aI~kLret~emL~K 34 (65)
||+ ++-+|.|-+..||+.+.-|+.
T Consensus 5 F~~---~~ktP~elVr~l~d~l~~l~~ 28 (341)
T 1upk_A 5 FGK---SHKSPADIVKNLKESMAVLEK 28 (341)
T ss_dssp --------CCHHHHHHHHHHHHHHHHC
T ss_pred CCC---CCCCHHHHHHHHHHHHHHHhc
Confidence 885 355699999999999999974
No 18
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.68 E-value=94 Score=17.98 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q psy13000 31 MLIKKQEFLEKKIG 44 (65)
Q Consensus 31 mL~KKe~~LekkI~ 44 (65)
.|..+...|..+|+
T Consensus 70 ~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 70 LLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555554
No 19
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=27.00 E-value=75 Score=16.67 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13000 19 GEAIQKLRETEDMLIKKQEFLEKKIGEE 46 (65)
Q Consensus 19 ~~aI~kLret~emL~KKe~~LekkI~~E 46 (65)
-|-+-.|-+.-+-|++|=..||.|++.=
T Consensus 8 ydlvsel~~r~e~LE~Ri~~LE~KLd~L 35 (43)
T 2pnv_A 8 YDMISDLNERSEDFEKRIVTLETKLETL 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3456678888888899999999888763
No 20
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=26.75 E-value=1.2e+02 Score=18.73 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13000 17 TTGEAIQKLRETEDMLIKKQEFLEKKIGE 45 (65)
Q Consensus 17 ~~~~aI~kLret~emL~KKe~~LekkI~~ 45 (65)
+..+|+.-|...++.|++.-+-|+..++.
T Consensus 95 ~~~eA~~~l~~ri~~l~~~l~~l~~~l~~ 123 (151)
T 2zdi_C 95 SIDEAISFLEKRLKEYDEAIKKTQGALAE 123 (151)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778877777777777776666665554
No 21
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=25.21 E-value=1.3e+02 Score=18.70 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=15.1
Q ss_pred CCCHHH-HHHHHHHHHHHHHHHHHH
Q psy13000 15 GPTTGE-AIQKLRETEDMLIKKQEF 38 (65)
Q Consensus 15 ~~~~~~-aI~kLret~emL~KKe~~ 38 (65)
.++++| .|..|+..++.|..-=+.
T Consensus 9 ~~d~rD~~Ie~Lkreie~lk~ele~ 33 (120)
T 3i00_A 9 NKDEKDHLIERLYREISGLKAQLEN 33 (120)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 556667 677788777777554333
No 22
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=23.38 E-value=1.8e+02 Score=19.80 Aligned_cols=33 Identities=9% Similarity=0.150 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13000 17 TTGEAIQKLRETEDMLIKKQEFLEKKIGEEINI 49 (65)
Q Consensus 17 ~~~~aI~kLret~emL~KKe~~LekkI~~E~~~ 49 (65)
+|.++|..|.+.++-|+..-+.++..+.+-...
T Consensus 223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 223 PLGKAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988888877765443
No 23
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.12 E-value=1.1e+02 Score=17.11 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13000 20 EAIQKLRETEDMLIKKQEFLEKKI 43 (65)
Q Consensus 20 ~aI~kLret~emL~KKe~~LekkI 43 (65)
+=|..|.+..+.|+..-+.|..++
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~ 70 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQN 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555444444444433
No 24
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=22.63 E-value=1.1e+02 Score=17.89 Aligned_cols=21 Identities=10% Similarity=0.026 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy13000 25 LRETEDMLIKKQEFLEKKIGE 45 (65)
Q Consensus 25 Lret~emL~KKe~~LekkI~~ 45 (65)
|++.+.-|+++...|+.++..
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~ 22 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLEL 22 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777654
No 25
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=21.90 E-value=18 Score=22.38 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=13.9
Q ss_pred CchhhhhhcCCCCCCCCHHHHHHHHHHHH
Q psy13000 1 MSFFKNIFGKTEEKGPTTGEAIQKLRETE 29 (65)
Q Consensus 1 Ms~~~~~FG~~~~~~~~~~~aI~kLret~ 29 (65)
||.+ +||-|+++...-+..-|..|-..+
T Consensus 1 M~~l-KWfsGG~ER~~~Ai~iI~~Ll~~l 28 (98)
T 2k19_A 1 MGKL-KWFSGGKERSNQAENIITDLLDDL 28 (98)
T ss_dssp CCSC-CCCSCCSCHHHHHHHHHHHHHHHH
T ss_pred CCCc-eeccCCHHHHHHHHHHHHHHHHHh
Confidence 5553 567765544444444444444443
No 26
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=21.61 E-value=20 Score=25.99 Aligned_cols=11 Identities=18% Similarity=0.622 Sum_probs=8.5
Q ss_pred CchhhhhhcCC
Q psy13000 1 MSFFKNIFGKT 11 (65)
Q Consensus 1 Ms~~~~~FG~~ 11 (65)
|+||+.||||+
T Consensus 305 ~~mmg~lFgGg 315 (336)
T 3lpz_A 305 LDMMGSLFGGG 315 (336)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHhcCCC
Confidence 36789999974
No 27
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.80 E-value=1.3e+02 Score=17.37 Aligned_cols=34 Identities=15% Similarity=0.014 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13000 19 GEAIQKLRETEDMLIKKQEFLEKKIGEEINIART 52 (65)
Q Consensus 19 ~~aI~kLret~emL~KKe~~LekkI~~E~~~AKk 52 (65)
++++.+-.+.+...+.+=+-|+++|++-.+..+.
T Consensus 25 q~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~ 58 (72)
T 3nmd_A 25 QYALQEKIEELRQRDALIDELELELDQKDELIQM 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544555555555556677777765555443
No 28
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=20.80 E-value=49 Score=16.73 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=14.1
Q ss_pred CchhhhhhcCCCCCCCCHHHHHHH
Q psy13000 1 MSFFKNIFGKTEEKGPTTGEAIQK 24 (65)
Q Consensus 1 Ms~~~~~FG~~~~~~~~~~~aI~k 24 (65)
|.+|.+++.. +-+.++.||.+
T Consensus 9 ~~~fk~iY~~---gddd~kram~K 29 (35)
T 2jtt_C 9 MNVLKKIYED---GDDDMKRTINK 29 (35)
T ss_dssp HHHHHHHHTT---CCSSHHHHHHH
T ss_pred HHHHHHHHhc---CCHHHHHHHHH
Confidence 3567777763 56778888865
No 29
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=20.56 E-value=67 Score=16.78 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13000 18 TGEAIQKLRETEDMLIKKQEFLEKKI 43 (65)
Q Consensus 18 ~~~aI~kLret~emL~KKe~~LekkI 43 (65)
+..-|..|.+.++.|+..=..|+..|
T Consensus 42 ~~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 42 STKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666555555443
No 30
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=20.44 E-value=1.5e+02 Score=17.81 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13000 22 IQKLRETEDMLIKKQEFLEKKIGE 45 (65)
Q Consensus 22 I~kLret~emL~KKe~~LekkI~~ 45 (65)
+..|+..++-|+..|..|...|..
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~ 31 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNI 31 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888899988888888765
No 31
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.14 E-value=2e+02 Score=22.60 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy13000 32 LIKKQEFLEKKIGEEI 47 (65)
Q Consensus 32 L~KKe~~LekkI~~E~ 47 (65)
|+++..+|+.+|+.++
T Consensus 115 LRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
Done!