Query psy13000
Match_columns 65
No_of_seqs 110 out of 196
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 16:38:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13000.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13000hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kcqa_ d.109.1.1 (A:) Gelsoli 57.5 0.65 4.8E-05 26.2 -0.9 16 3-18 85-100 (104)
2 d1tqxa_ c.1.2.2 (A:) D-ribulos 46.2 7.5 0.00055 24.3 2.9 21 5-30 199-219 (221)
3 d1irya_ d.113.1.1 (A:) 7,8-dih 42.9 5.9 0.00043 22.7 1.8 22 3-24 30-51 (156)
4 d2azeb1 e.63.1.2 (B:201-301) T 37.5 32 0.0023 19.4 4.7 31 22-52 3-33 (101)
5 d1vr4a1 d.230.5.1 (A:1-103) Hy 36.5 15 0.0011 20.6 2.9 29 1-29 36-69 (103)
6 d1vk6a2 d.113.1.4 (A:126-256) 35.9 5.9 0.00043 22.2 1.0 21 3-23 27-47 (131)
7 d1puna_ d.113.1.1 (A:) Nucleos 34.6 7.1 0.00052 21.3 1.2 25 3-27 31-56 (129)
8 d2f23a1 a.2.1.1 (A:3-77) GreA 33.2 33 0.0024 18.4 4.2 35 16-54 4-38 (75)
9 d1h1ya_ c.1.2.2 (A:) D-ribulos 31.6 18 0.0013 22.5 2.9 21 5-30 197-217 (220)
10 d1sd4a_ a.4.5.39 (A:) Penicill 27.5 5.9 0.00043 22.6 -0.0 32 3-34 82-121 (122)
11 d1nkta3 c.37.1.19 (A:-15-225,A 25.5 27 0.0019 23.4 3.1 40 2-47 16-55 (288)
12 d1vcda1 d.113.1.1 (A:1-126) AP 23.3 16 0.0012 19.8 1.4 20 4-23 25-44 (126)
13 d1q6oa_ c.1.2.3 (A:) 3-keto-L- 22.8 38 0.0027 19.1 3.1 18 14-31 194-211 (213)
14 d2a6ta2 d.113.1.7 (A:95-245) m 21.1 16 0.0012 20.5 1.0 20 4-23 28-47 (151)
15 d1fxkc_ a.2.5.1 (C:) Prefoldin 20.4 68 0.0049 17.6 5.7 31 16-46 84-114 (133)
No 1
>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.47 E-value=0.65 Score=26.22 Aligned_cols=16 Identities=13% Similarity=0.140 Sum_probs=11.2
Q ss_pred hhhhhhcCCCCCCCCH
Q psy13000 3 FFKNIFGKTEEKGPTT 18 (65)
Q Consensus 3 ~~~~~FG~~~~~~~~~ 18 (65)
.|+++|||++.-++.+
T Consensus 85 ~F~~~lGg~~~~~~~~ 100 (104)
T d1kcqa_ 85 AMLQVLGPKPALPAGT 100 (104)
T ss_dssp HHHHHHCSCCCCCCCC
T ss_pred HHHHHhCCCCCCCCCC
Confidence 5899999876544443
No 2
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}
Probab=46.24 E-value=7.5 Score=24.27 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=16.4
Q ss_pred hhhhcCCCCCCCCHHHHHHHHHHHHH
Q psy13000 5 KNIFGKTEEKGPTTGEAIQKLRETED 30 (65)
Q Consensus 5 ~~~FG~~~~~~~~~~~aI~kLret~e 30 (65)
+.+|+ .++|.++|.+||+.++
T Consensus 199 S~if~-----~~d~~~~i~~Lr~~i~ 219 (221)
T d1tqxa_ 199 TSIFN-----AEDPKYVIDTMRVSVQ 219 (221)
T ss_dssp HHHHT-----CSSHHHHHHHHHHHHH
T ss_pred hHHHC-----CCCHHHHHHHHHHHHh
Confidence 45665 3579999999999875
No 3
>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.86 E-value=5.9 Score=22.73 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=16.8
Q ss_pred hhhhhhcCCCCCCCCHHHHHHH
Q psy13000 3 FFKNIFGKTEEKGPTTGEAIQK 24 (65)
Q Consensus 3 ~~~~~FG~~~~~~~~~~~aI~k 24 (65)
+.|.+.||+-+..++|.+|+.+
T Consensus 30 g~W~lPGG~ve~gEt~~~aa~R 51 (156)
T d1irya_ 30 GRWNGFGGKVQEGETIEDGARR 51 (156)
T ss_dssp TCEECBCCBCCTTCCHHHHHHH
T ss_pred CEEECcEeEecCCCCHHHHHHH
Confidence 4567888877788899998763
No 4
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.51 E-value=32 Score=19.38 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13000 22 IQKLRETEDMLIKKQEFLEKKIGEEINIART 52 (65)
Q Consensus 22 I~kLret~emL~KKe~~LekkI~~E~~~AKk 52 (65)
++.|+..++-|+.+|..|...|..--..-+.
T Consensus 3 ~~~L~~El~~L~~~E~~LD~li~~~~~~L~~ 33 (101)
T d2azeb1 3 LEGLTQDLRQLQESEQQLDHLMNICTTQLRL 33 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888877654443333
No 5
>d1vr4a1 d.230.5.1 (A:1-103) Hypothetical protein BC1012 {Bacillus cereus [TaxId: 1396]}
Probab=36.55 E-value=15 Score=20.56 Aligned_cols=29 Identities=10% Similarity=0.241 Sum_probs=17.0
Q ss_pred CchhhhhhcCCCCCC-----CCHHHHHHHHHHHH
Q psy13000 1 MSFFKNIFGKTEEKG-----PTTGEAIQKLRETE 29 (65)
Q Consensus 1 Ms~~~~~FG~~~~~~-----~~~~~aI~kLret~ 29 (65)
+++|+.+|||+...= ..-.+||.+|++.-
T Consensus 36 ~a~~~~~~gG~~~~y~~~l~~aR~eA~~rl~~~A 69 (103)
T d1vr4a1 36 FASVRDVVGGRAGSYESKLKEARDIAMDEMKELA 69 (103)
T ss_dssp CGGGSSEEETTTTSSSCTTHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888753221 22467777777653
No 6
>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}
Probab=35.87 E-value=5.9 Score=22.20 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=16.0
Q ss_pred hhhhhhcCCCCCCCCHHHHHH
Q psy13000 3 FFKNIFGKTEEKGPTTGEAIQ 23 (65)
Q Consensus 3 ~~~~~FG~~~~~~~~~~~aI~ 23 (65)
++|.+.||+-+..+||.+|+.
T Consensus 27 g~w~lpGG~ve~GEt~~~aa~ 47 (131)
T d1vk6a2 27 GVHTVLAGFVEVGETLEQAVA 47 (131)
T ss_dssp SCCBCEEEECCTTCCHHHHHH
T ss_pred CCEecccCCCcCCCcHHHHHH
Confidence 356677777678899999986
No 7
>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}
Probab=34.56 E-value=7.1 Score=21.32 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=16.5
Q ss_pred hhhhhhcCCCCCCCCHHHHHH-HHHH
Q psy13000 3 FFKNIFGKTEEKGPTTGEAIQ-KLRE 27 (65)
Q Consensus 3 ~~~~~FG~~~~~~~~~~~aI~-kLre 27 (65)
++|.|-||+-+..++|.+|+. .++|
T Consensus 31 g~W~~PgG~ve~gEs~~~a~~RE~~E 56 (129)
T d1puna_ 31 NKLEFPGGKIEMGETPEQAVVRELQE 56 (129)
T ss_dssp TCCBCSCCSCTTTSCTTHHHHHHHHH
T ss_pred CcEECCcceecCCCchhHHHHHHHHH
Confidence 456666776667778888765 3554
No 8
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=33.22 E-value=33 Score=18.35 Aligned_cols=35 Identities=6% Similarity=0.005 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13000 16 PTTGEAIQKLRETEDMLIKKQEFLEKKIGEEINIARTNG 54 (65)
Q Consensus 16 ~~~~~aI~kLret~emL~KKe~~LekkI~~E~~~AKk~~ 54 (65)
+-|++...+|.+.++.|..+ -..|...+..|+.+|
T Consensus 4 ~lT~eg~~kL~~EL~~l~~~----r~ei~~~I~eAr~~G 38 (75)
T d2f23a1 4 KLTKAGYERLMQQLERERER----LQEATKILQELMESS 38 (75)
T ss_dssp EECHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHTCS
T ss_pred ccCHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHhC
Confidence 45678899999999987322 347888999999988
No 9
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=31.63 E-value=18 Score=22.46 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=16.4
Q ss_pred hhhhcCCCCCCCCHHHHHHHHHHHHH
Q psy13000 5 KNIFGKTEEKGPTTGEAIQKLRETED 30 (65)
Q Consensus 5 ~~~FG~~~~~~~~~~~aI~kLret~e 30 (65)
+.+|+ .++|.++|..||+.++
T Consensus 197 S~if~-----~~d~~~~i~~lr~~~~ 217 (220)
T d1h1ya_ 197 SSIFG-----AAEPGEVISALRKSVE 217 (220)
T ss_dssp HHHHT-----SSCHHHHHHHHHHHHH
T ss_pred HHHHC-----CCCHHHHHHHHHHHHH
Confidence 34665 4579999999999875
No 10
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]}
Probab=27.52 E-value=5.9 Score=22.61 Aligned_cols=32 Identities=19% Similarity=0.437 Sum_probs=19.1
Q ss_pred hhhhhhcCCC--------CCCCCHHHHHHHHHHHHHHHHH
Q psy13000 3 FFKNIFGKTE--------EKGPTTGEAIQKLRETEDMLIK 34 (65)
Q Consensus 3 ~~~~~FG~~~--------~~~~~~~~aI~kLret~emL~K 34 (65)
++.+||||.. +...-..+-|..|+..++-+++
T Consensus 82 ~~~~~~~gs~~~lv~~~~~~~~ls~~el~eL~~~l~~~~k 121 (122)
T d1sd4a_ 82 FLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILNDISK 121 (122)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc
Confidence 3567888742 2334455557778877765543
No 11
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=25.47 E-value=27 Score=23.41 Aligned_cols=40 Identities=15% Similarity=0.279 Sum_probs=20.1
Q ss_pred chhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13000 2 SFFKNIFGKTEEKGPTTGEAIQKLRETEDMLIKKQEFLEKKIGEEI 47 (65)
Q Consensus 2 s~~~~~FG~~~~~~~~~~~aI~kLret~emL~KKe~~LekkI~~E~ 47 (65)
++|+++||.+.+ .-|.+++-.++-.+..|+.++.--++|+
T Consensus 16 nilkKIFGs~n~------R~LKr~~~iV~kIN~LE~el~~LSDeEL 55 (288)
T d1nkta3 16 DILSKLLRLGEG------RMVKRLKKVADYVGTLSDDVEKLTDAEL 55 (288)
T ss_dssp HHHHHHHHTTCC------HHHHHHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHHHHcCCccH------HHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 467899996443 2344444444444444444444434433
No 12
>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}
Probab=23.26 E-value=16 Score=19.84 Aligned_cols=20 Identities=25% Similarity=0.131 Sum_probs=15.1
Q ss_pred hhhhhcCCCCCCCCHHHHHH
Q psy13000 4 FKNIFGKTEEKGPTTGEAIQ 23 (65)
Q Consensus 4 ~~~~FG~~~~~~~~~~~aI~ 23 (65)
.|.|-||+-+..+||.+|+.
T Consensus 25 ~w~~PgG~ve~gEt~~~aa~ 44 (126)
T d1vcda1 25 FWVFPKGHPEPGESLEEAAV 44 (126)
T ss_dssp CEECCEECCCTTCCHHHHHH
T ss_pred CEECCccccCCCCCHHHHHH
Confidence 45666777677889998876
No 13
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}
Probab=22.76 E-value=38 Score=19.12 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy13000 14 KGPTTGEAIQKLRETEDM 31 (65)
Q Consensus 14 ~~~~~~~aI~kLret~em 31 (65)
..++|.+|+.++|+.++-
T Consensus 194 ~a~dp~~a~~~~~~~i~~ 211 (213)
T d1q6oa_ 194 DAASPVEAARQFKRSIAE 211 (213)
T ss_dssp TSSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 467899999999998863
No 14
>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=21.10 E-value=16 Score=20.48 Aligned_cols=20 Identities=5% Similarity=-0.192 Sum_probs=14.3
Q ss_pred hhhhhcCCCCCCCCHHHHHH
Q psy13000 4 FKNIFGKTEEKGPTTGEAIQ 23 (65)
Q Consensus 4 ~~~~FG~~~~~~~~~~~aI~ 23 (65)
.|.|-||.-+..++|.+|+.
T Consensus 28 ~W~lPgG~ie~gEs~~~aa~ 47 (151)
T d2a6ta2 28 GWGFPKGKIDKDESDVDCAI 47 (151)
T ss_dssp CCBCSEEECCTTCCHHHHHH
T ss_pred CEECCcccccCCCCHHHHHH
Confidence 45666766667889988864
No 15
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.45 E-value=68 Score=17.58 Aligned_cols=31 Identities=6% Similarity=0.161 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13000 16 PTTGEAIQKLRETEDMLIKKQEFLEKKIGEE 46 (65)
Q Consensus 16 ~~~~~aI~kLret~emL~KKe~~LekkI~~E 46 (65)
-++.+|+.-|...++.|++.-+.|+.+|..=
T Consensus 84 ~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~ 114 (133)
T d1fxkc_ 84 KNFEDAMESIKSQKNELESTLQKMGENLRAI 114 (133)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888887777777777766553
Done!