RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13000
         (65 letters)



>d2q07a2 c.18.1.4 (A:244-393) Uncharacterized protein AF0587
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 150

 Score = 22.1 bits (47), Expect = 7.0
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 11  TEEKGPTTGEAIQKLRET 28
           T EK   + E+I++L++ 
Sbjct: 128 TAEKDVLSDESIERLKQE 145


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.131    0.354 

Gapped
Lambda     K      H
   0.267   0.0433    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 237,425
Number of extensions: 9168
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 5
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.6 bits)