Query psy13005
Match_columns 130
No_of_seqs 101 out of 183
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 16:43:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_E Cytochrome B559 subunit 92.8 0.13 4.6E-06 34.5 4.1 36 52-89 17-55 (83)
2 3vmt_A Monofunctional glycosyl 23.6 2E+02 0.0068 22.7 6.3 40 79-129 58-97 (263)
3 1m56_D Cytochrome C oxidase; m 19.7 1.3E+02 0.0045 17.9 3.5 21 1-21 1-32 (51)
4 2k9j_B Integrin beta-3; transm 15.2 1.2E+02 0.0042 17.2 2.5 31 6-36 4-34 (43)
5 1hll_A Alpha-2A adrenergic rec 14.8 42 0.0014 16.7 0.3 10 51-60 13-22 (32)
6 2knc_B Integrin beta-3; transm 13.7 2.2E+02 0.0074 18.2 3.7 31 6-36 5-35 (79)
7 2zxe_A Na, K-ATPase alpha subu 10.6 3.5E+02 0.012 24.7 5.3 16 44-59 983-998 (1028)
8 3ixz_A Potassium-transporting 9.9 3.4E+02 0.012 24.8 4.9 17 49-65 960-976 (1034)
9 4f4l_A ION transport protein; 9.5 2.2E+02 0.0074 18.8 2.7 27 69-95 78-104 (112)
10 1fft_C Ubiquinol oxidase; elec 9.1 1.3E+02 0.0044 22.2 1.5 27 10-36 22-48 (204)
No 1
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=92.81 E-value=0.13 Score=34.46 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=29.5
Q ss_pred chhH---HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q psy13005 52 KYWA---IAVPIYGMVLLFVFVMFFYPCINMSLTPVRDSPN 89 (130)
Q Consensus 52 kyWa---laiP~~~l~~~~~~~~~~y~~~n~~~T~plds~~ 89 (130)
|||. |.||++++.+.+|...+ .+|+..-||..|..-
T Consensus 17 RYWvIHsITIPslFiaGwLFVstG--LaYdvFGtPrpneYf 55 (83)
T 3arc_E 17 RYWVIHSITIPALFIAGWLFVSTG--LAYDVFGTPRPDSYY 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHTCCCTTSSS
T ss_pred eeEEEEeeccchHHHhhhhhhccC--cceeccCCCCccccc
Confidence 7884 69999999999988776 688888999876543
No 2
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=23.64 E-value=2e+02 Score=22.67 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=26.4
Q ss_pred hhcCCCCCCCcccccCCCccccCCCCCCCCCCcccCCHHHHHHHHhccCCC
Q psy13005 79 MSLTPVRDSPNVMIDSFSLSDKKETVPGGIPSACDIPISTVCEMLYLKNKK 129 (130)
Q Consensus 79 ~~~T~plds~~tI~D~~a~~~~~~~~~~~ip~i~DlPi~~Vn~~LY~~~~~ 129 (130)
+..++..+++..+... ...-++.|||-..++.++--+|+.
T Consensus 58 ~~~~~~~~~l~~~~~~-----------r~~v~l~~Ip~~l~~AvIA~ED~r 97 (263)
T 3vmt_A 58 LSTRDNVDELRKIENK-----------SSFVSADNMPEYVKGAFISMEDER 97 (263)
T ss_dssp HHSCSCGGGGGGGGGS-----------TTCCCGGGSCHHHHHHHHHHHCTT
T ss_pred hhccCchhhhhhhhcc-----------CCCCCHHHcCHHHHHHHHHHHcch
Confidence 4677777776554322 223478888888888888776653
No 3
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=19.71 E-value=1.3e+02 Score=17.91 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=7.2
Q ss_pred CCCCCC-CCCCCc----------hhhHHHHHH
Q psy13005 1 MVESTP-SPTPSR----------ANNGFVLYL 21 (130)
Q Consensus 1 m~~~~p-~p~~~r----------e~yGFv~~i 21 (130)
|.||.. +|...| -+-||..+.
T Consensus 1 Maeh~~~~~~~~~g~MD~~~he~Ty~gFi~~~ 32 (51)
T 1m56_D 1 MADHSHPAHGHVAGSMDITQQEKTFAGFVRMV 32 (51)
T ss_dssp ---------CCCTTCSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHH
Confidence 667664 454422 377777654
No 4
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=15.24 E-value=1.2e+02 Score=17.23 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=18.8
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHhhcc
Q psy13005 6 PSPTPSRANNGFVLYLASTIMFVVYLIWAFI 36 (130)
Q Consensus 6 p~p~~~re~yGFv~~i~s~~~~~lyl~Wa~l 36 (130)
|.|.+-.++-|.+.=-...+++++.++|-+.
T Consensus 4 p~~~n~~~Iv~gvi~~ivliGl~lLliwk~~ 34 (43)
T 2k9j_B 4 PKGPDILVVLLSVMGAILLIGLAALLIWKLL 34 (43)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEeehHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344344555555554556788888888664
No 5
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Probab=14.77 E-value=42 Score=16.75 Aligned_cols=10 Identities=40% Similarity=1.135 Sum_probs=6.7
Q ss_pred cchhHHHHHH
Q psy13005 51 QKYWAIAVPI 60 (130)
Q Consensus 51 ~kyWalaiP~ 60 (130)
|||+||.-|.
T Consensus 13 dRy~aI~~Pl 22 (32)
T 1hll_A 13 DRYWSITQAI 22 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhhhh
Confidence 5777776664
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=13.70 E-value=2.2e+02 Score=18.19 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=19.1
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHhhcc
Q psy13005 6 PSPTPSRANNGFVLYLASTIMFVVYLIWAFI 36 (130)
Q Consensus 6 p~p~~~re~yGFv~~i~s~~~~~lyl~Wa~l 36 (130)
|.|..-.++-|.+.=-...+++++.++|-++
T Consensus 5 p~~~n~~~Iv~gvi~gilliGllllliwk~~ 35 (79)
T 2knc_B 5 SKGPDILVVLLSVMGAILLIGLAALLIWKLL 35 (79)
T ss_dssp CSSSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566666555666677777777644
No 7
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=10.58 E-value=3.5e+02 Score=24.67 Aligned_cols=16 Identities=25% Similarity=0.565 Sum_probs=7.0
Q ss_pred cCccccccchhHHHHH
Q psy13005 44 FGLTYLPQKYWAIAVP 59 (130)
Q Consensus 44 lgity~P~kyWalaiP 59 (130)
+|.+=+|-.+|.++++
T Consensus 983 f~~~~l~~~~w~~~~~ 998 (1028)
T 2zxe_A 983 LRMYPLKPSWWFCAFP 998 (1028)
T ss_dssp TCCCCCCGGGGGTTHH
T ss_pred hcCCCCCHHHHHHHHH
Confidence 3444444445544433
No 8
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=9.94 E-value=3.4e+02 Score=24.78 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=7.9
Q ss_pred cccchhHHHHHHHHHHH
Q psy13005 49 LPQKYWAIAVPIYGMVL 65 (130)
Q Consensus 49 ~P~kyWalaiP~~~l~~ 65 (130)
+.+|++-.++=.-+++.
T Consensus 960 ~~N~~l~~~~~~~~~l~ 976 (1034)
T 3ixz_A 960 FRNRILVIAIVFQVCIG 976 (1034)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 45565555444433333
No 9
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=9.50 E-value=2.2e+02 Score=18.82 Aligned_cols=27 Identities=7% Similarity=0.193 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCcccccCC
Q psy13005 69 FVMFFYPCINMSLTPVRDSPNVMIDSF 95 (130)
Q Consensus 69 ~~~~~y~~~n~~~T~plds~~tI~D~~ 95 (130)
..++.+..+|+....=+|+++...++.
T Consensus 78 i~i~~fi~lNLfiaVi~~~f~~~~~~~ 104 (112)
T 4f4l_A 78 IMLTTFTVLNLFIGIIVDAMAITKEQE 104 (112)
T ss_dssp HHHHHHHHHHHHTTTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334447789998777666665554443
No 10
>1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.25.1.1
Probab=9.09 E-value=1.3e+02 Score=22.17 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=23.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhhcc
Q psy13005 10 PSRANNGFVLYLASTIMFVVYLIWAFI 36 (130)
Q Consensus 10 ~~re~yGFv~~i~s~~~~~lyl~Wa~l 36 (130)
.+..-.|+..++.|=+.+..-++|+|.
T Consensus 22 ~~~~~~G~wlfi~sE~~~F~~lf~ay~ 48 (204)
T 1fft_C 22 GGTKIFGFWIYLMSDCILFSILFATYA 48 (204)
T ss_dssp TTHHHHHHHTTHHHHTTHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344589999999999999999999985
Done!