RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13005
(130 letters)
>gnl|CDD|219875 pfam08510, PIG-P, PIG-P. PIG-P (phosphatidylinositol
N-acetylglucosaminyltransferase subunit P) is an enzyme
involved in GPI anchor biosynthesis.
Length = 123
Score = 109 bits (274), Expect = 6e-32
Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 9/124 (7%)
Query: 10 PSRANNGFVLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVF 69
P+R GFVLY+ ST++FV+YL+WAF+PD +L+ G+TY P +YWA+A+PIY +++ ++
Sbjct: 1 PTREYYGFVLYILSTLLFVLYLLWAFLPDPVLHSLGITYYPSRYWALAIPIY-LLMAMLY 59
Query: 70 VMFFYPCINMSLTPVRDSPNVMIDSFSLSDK--------KETVPGGIPSACDIPISTVCE 121
Y N+ LTP DS + D ++ E IP D+PIS V
Sbjct: 60 AYVGYALYNLVLTPPLDSLETITDEYARVLDEDDDADFEDEEKEKSIPGVYDLPISEVNR 119
Query: 122 MLYL 125
+LY
Sbjct: 120 LLYG 123
>gnl|CDD|148734 pfam07297, DPM2, Dolichol phosphate-mannose biosynthesis
regulatory protein (DPM2). This family consists of
several eukaryotic dolichol phosphate-mannose
biosynthesis regulatory (DPM2) proteins. Biosynthesis
of glycosylphosphatidylinositol and N-glycan precursor
is dependent upon a mannosyl donor, dolichol
phosphate-mannose (DPM). DPM2, an 84 amino acid
membrane protein expressed in the endoplasmic reticulum
(ER), makes a complex with DPM1 that is essential for
the ER localisation and stable expression of DPM1.
Moreover, DPM2 enhances binding of dolichol phosphate,
a substrate of DPM synthase. Biosynthesis of DPM in
mammalian cells is regulated by DPM2.
Length = 80
Score = 33.6 bits (77), Expect = 0.005
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 16 GFVLYLASTIMFVVYLIWA----FIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVM 71
G L S I+F Y IW F+ + ++ + +AI +P+ +LL +FV
Sbjct: 9 GLGLLAVSLIIFTYYTIWVILLPFVDSD---HVIHSFFLPREYAIRIPVIAGLLLLLFVG 65
Query: 72 FF 73
F
Sbjct: 66 SF 67
>gnl|CDD|225937 COG3402, COG3402, Uncharacterized conserved protein [Function
unknown].
Length = 161
Score = 28.5 bits (64), Expect = 0.66
Identities = 10/72 (13%), Positives = 18/72 (25%), Gaps = 13/72 (18%)
Query: 3 ESTPSPTPSRANNGFVLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYG 62
+ S V + I + L+ A +LY+ G W
Sbjct: 6 MNPLSKKVLT-----VWRVQEWIPIALVLLIAVAAGVLLYFVG----LDPNW----SSVA 52
Query: 63 MVLLFVFVMFFY 74
V + +
Sbjct: 53 AVAVILLAAVVT 64
>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1
(LMP1). This family consists of several latent membrane
protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1
of EBV is a 62-65 kDa plasma membrane protein possessing
six membrane spanning regions, a short cytoplasmic
N-terminus and a long cytoplasmic carboxy tail of 200
amino acids. EBV latent membrane protein 1 (LMP1) is
essential for EBV-mediated transformation and has been
associated with several cases of malignancies. EBV-like
viruses in Cynomolgus monkeys (Macaca fascicularis) have
been associated with high lymphoma rates in
immunosuppressed monkeys.
Length = 382
Score = 28.1 bits (62), Expect = 1.2
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 21 LASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVMFFY 74
L +TI ++ AF IL L YL Q +W + V + ++L +++ Y
Sbjct: 133 LGATIWQLLAFFLAFFLAIILLIIAL-YLQQNWWTLLVDLLWLLLFLAILIWMY 185
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 27.6 bits (62), Expect = 1.9
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 43 YFGLTYLPQKYWAIAVPIYGMVLLFVFVMFFYP 75
Y+ YLPQ + + VP +L+ + + FF
Sbjct: 113 YYAR-YLPQMFLSAIVP----LLILIAIFFFNW 140
>gnl|CDD|234058 TIGR02916, PEP_his_kin, putative PEP-CTERM system histidine kinase.
Members of this protein family have a novel N-terminal
domain, a single predicted membrane-spanning helix, and
a predicted cystosolic histidine kinase domain. We
designate this protein PrsK, and its companion
DNA-binding response regulator protein (TIGR02915) PrsR.
These predicted signal-transducing proteins appear to
enable enhancer-dependent transcriptional activation.
The prsK gene is often associated with exopolysaccharide
biosynthesis genes [Protein fate, Protein and peptide
secretion and trafficking, Signal transduction,
Two-component systems].
Length = 679
Score = 27.4 bits (61), Expect = 2.5
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 17/77 (22%)
Query: 30 YLIWAFIPDSILYYFGLTYLPQKY--------WAIAVPIYGMVLLFVFVMFFYP------ 75
Y + F+ +L GL + Q Y WAI G+ LFVF + Y
Sbjct: 131 YFLLGFL---LLAVIGLVLVEQLYRNAPLESRWAIKFLCLGLGALFVFDFYLYADALLFR 187
Query: 76 CINMSLTPVRDSPNVMI 92
++ + P R ++
Sbjct: 188 RLDTDVWPARGLVAALV 204
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 27.1 bits (61), Expect = 2.8
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 48 YLPQKYWAIAVPIYGMVLLFVF 69
YLPQ A+ VP+ ++L+ VF
Sbjct: 140 YLPQMALAVLVPL--LILIAVF 159
>gnl|CDD|217990 pfam04257, Exonuc_V_gamma, Exodeoxyribonuclease V, gamma subunit.
The Exodeoxyribonuclease V enzyme is a multi-subunit
enzyme comprised of the proteins RecB, RecC (this
family) and RecD. This enzyme plays an important role in
homologous genetic recombination, repair of double
strand DNA breaks resistance to UV irradiation and
chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes
ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of
ssDNA or dsDNA and unwinding of dsDNA. This family
consists of two AAA domains.
Length = 756
Score = 26.8 bits (60), Expect = 3.7
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 31 LIWAFIPDSILYYFGLTYLPQKYWAI--AVPIYGMVLLFVF 69
L A +P I + FG++ LP Y I A+ + V LF+
Sbjct: 198 LAPAKLPKRI-FVFGISSLPPLYLEILQALSRHTDVHLFLL 237
>gnl|CDD|204437 pfam10292, 7TM_GPCR_Srab, Serpentine type 7TM GPCR receptor class
ab chemoreceptor. Chemoreception is mediated in
Caenorhabditis elegans by members of the
seven-transmembrane G-protein-coupled receptor class
(7TM GPCRs) of proteins which are of the serpentine
type. Srab is part of the Sra superfamily of
chemoreceptors. Chemoperception is one of the central
senses of soil nematodes like C. elegans which are
otherwise 'blind' and 'deaf'. The expression pattern of
the srab genes is biologically intriguing. Of the six
promoters successfully expressed in transgenic
organisms, one was exclusively expressed in the tail
phasmid neurons, two were exclusively expressed in a
head amphid neuron, and two were expressed both in the
head and tail neurons as well as a limited number of
other cells.
Length = 323
Score = 26.8 bits (60), Expect = 3.8
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 27 FVVYLIWAFIPDSILYYFGLTYLPQKYWAI-----AVPIYGMVLLFVFVMF 72
FVV I F+ L++FG + Y+A+ +P+Y ++ + +
Sbjct: 244 FVVIQITGFLF---LHFFGSSMSKPTYFALIELNHCLPLYAIISIIILYRR 291
>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase. This family
includes the well known DHHC zinc binding domain as well
as three of the four conserved transmembrane regions
found in this family of palmitoyltransferase enzymes.
Length = 167
Score = 26.3 bits (58), Expect = 3.8
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 17 FVLYLASTIMFVVYLIWAFI-----PDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVM 71
F+L+L ++++ L+ + F L I + + LLF+ +
Sbjct: 87 FLLFLLYLTLYLILLLVLSFYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFL 146
Query: 72 FFYPCINMS 80
F+ +
Sbjct: 147 LFFHLYLIL 155
>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class)
[Posttranslational modification, protein turnover,
chaperones].
Length = 436
Score = 26.5 bits (59), Expect = 4.2
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 40 ILYYFGLTYLPQKYWAIAVPIYGMVLLFV 68
+L ++GL +L + + + I G +L+
Sbjct: 269 LLGFYGLLFLGINWAGLLLIILGAILIVA 297
>gnl|CDD|188086 TIGR00819, ydaH, p-Aminobenzoyl-glutamate transporter family. The
p-Aminobenzoyl-glutamate transporter family includes two
transporters, the AbgT (YdaH) protein of E. coli and
MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic
in wild type cells, but when expressed on a high copy
number plasmid, or when expressed at higher levels due
to mutation, it allows utilization of
p-aminobenzoyl-glutamate as a source of p-aminobenzoate
for p-aminobenzoate auxotrophs. p-Aminobenzoate is a
constituent of and a precursor for the biosynthesis of
folic acid [Hypothetical proteins, Conserved].
Length = 525
Score = 26.8 bits (59), Expect = 4.2
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 10/77 (12%)
Query: 25 IMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVMFFYPCI-----NM 79
I F+ + IP G+ P+ P ++ F+F+ F P I
Sbjct: 284 IAFIAAIALMIIPAD-----GILRDPENGLVAGSPFIKGIVPFIFLFFALPGIAYGIATR 338
Query: 80 SLTPVRDSPNVMIDSFS 96
S+ D P+ M +
Sbjct: 339 SIRGEADLPHAMAEPMK 355
>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a
unique C-terminal domain [Inorganic ion transport and
metabolism].
Length = 574
Score = 26.2 bits (58), Expect = 5.6
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 18/62 (29%)
Query: 12 RANNGFVLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVM 71
R +G +LA +MF+V GL P + IA+P +LL ++++
Sbjct: 268 RFFDGLA-WLAQILMFLV--------------LGLLVTPSQLLPIAIP---AILLSLWMI 309
Query: 72 FF 73
F
Sbjct: 310 FV 311
>gnl|CDD|177114 MTH00039, COX3, cytochrome c oxidase subunit III; Validated.
Length = 260
Score = 25.8 bits (57), Expect = 6.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 16 GFVLYLASTIMFVVYLIWAF 35
G +L++ S + F WAF
Sbjct: 81 GMILFITSEVCFFFAFFWAF 100
>gnl|CDD|132859 cd07220, Pat_PNPLA2, Patatin-like phospholipase domain containing
protein 2. PNPLA2 plays a key role in hydrolysis of
stored triacylglecerols and is also known as adipose
triglyceride lipase (ATGL). Members of this family share
a patain domain, initially discovered in potato tubers.
ATGL is expressed in white and brown adipose tissue in
high mRNA levels. Mutations in PNPLA2 encoding adipose
triglyceride lipase (ATGL) leads to neutral lipid
storage disease (NLSD) which is characterized by the
accumulation of triglycerides in multiple tissues. ATGL
mutations are also commonly associated with severe forms
of skeletal- and cardio-myopathy. This family includes
patatin-like proteins: TTS-2.2 (transport-secretion
protein 2.2), PNPLA2 (Patatin-like phospholipase
domain-containing protein 2), and iPLA2-zeta
(Calcium-independent phospholipase A2) from Homo
sapiens.
Length = 249
Score = 25.9 bits (57), Expect = 7.7
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 79 MSLTPVRDSPNVMIDSFSLSDKKETVPGGIPSACDIPI 116
+SLT V D NV++ F + K+E + + S C IP+
Sbjct: 113 ISLTRVSDGENVLVSDF--NSKEELIQALVCS-CFIPV 147
>gnl|CDD|177101 MTH00009, COX3, cytochrome c oxidase subunit III; Validated.
Length = 259
Score = 25.6 bits (56), Expect = 7.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 16 GFVLYLASTIMFVVYLIWAFIPDSI 40
G +L++AS +MF WAF S+
Sbjct: 80 GMILFIASEVMFFFAFFWAFFHSSL 104
>gnl|CDD|132860 cd07221, Pat_PNPLA3, Patatin-like phospholipase domain containing
protein 3. PNPLA3 is a triacylglycerol lipase that
mediates triacylglycerol hydrolysis in adipocytes and is
an indicator of the nutritional state. PNPLA3 is also
known as adiponutrin (ADPN) or iPLA2-epsilon. Human
adiponutrins are bound to the cell membrane of
adipocytes and show transacylase, TG hydrolase, and PLA2
activity. This family includes patatin-like proteins:
ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like
phospholipase domain-containing protein 3), and
iPLA2-epsilon (Calcium-independent phospholipase A2)
from Homo sapiens.
Length = 252
Score = 25.5 bits (56), Expect = 8.5
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 77 INMSLTPVRDSPNVMIDSFSLSDKKETVPGGIPSACDIP 115
+ +SLT V D NV++ F K+ V + +C IP
Sbjct: 107 MCISLTRVSDGENVLVSDF---HSKDEVVDALVCSCFIP 142
>gnl|CDD|218850 pfam05999, Herpes_U5, Herpesvirus U5-like family. This family of
Herpesvirus includes U4, U5 and UL27.
Length = 447
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 9 TPSRANNGFVLYLASTIMFVVYLI 32
P VLYLAS I+F+++LI
Sbjct: 211 GPDERY---VLYLASNIVFLLFLI 231
>gnl|CDD|233016 TIGR00546, lnt, apolipoprotein N-acyltransferase. This enzyme
transfers the acyl group to lipoproteins in the
lgt/lsp/lnt system which is found broadly in bacteria
but not in archaea. This model represents one component
of the "lipoprotein lgt/lsp/lnt system" genome property
[Protein fate, Protein modification and repair].
Length = 391
Score = 25.8 bits (57), Expect = 8.5
Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 13/59 (22%)
Query: 16 GFVLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVMFFY 74
GF +LA ++ + + + F + V +L + Y
Sbjct: 2 GFGFFLAG-----LFWLGIALSVNGFIAFV--------AGLLVVGLPALLALFPGLAAY 47
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 25.8 bits (57), Expect = 9.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 19 LYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVMFF 73
L+LA ++ ++ L+ F+P L F T L W IA+ + ++L V +
Sbjct: 856 LWLALLVIIILQLLIIFLPPLNLKIFQPTPLSLFEWLIAIAVALLLLYIVVSELY 910
>gnl|CDD|233511 TIGR01654, bact_immun_7tm, bacteriocin-associated integral membrane
(putative immunity) protein. This model represents a
family of integral membrane proteins, most of which are
about 650 residues in size and predicted to span the
membrane seven times. Nearly half of the members of this
family are found in association with a member of the
lactococcin 972 family of bacteriocins (TIGR01653).
Others may be associated with uncharacterized proteins
that may also act as bacteriocins. Although this protein
is suggested to be an immunity protein, and the
bacteriocin is suggested to be exported by a
Sec-dependent process, the role of this protein is
unclear [Cellular processes, Toxin production and
resistance].
Length = 679
Score = 25.9 bits (57), Expect = 9.4
Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 24 TIMFVVYLIWAFIPDSILYYFGLTYLPQKYW-AIAVPIYGMVLLFVFVMFFY 74
T + + L+ + +L+ G TYL + Y +++ + ++LL + + F
Sbjct: 218 TYLLISALLILLLSSFLLFIKGYTYLLKDYIFMLSLSVLLLLLLLLIISFLT 269
>gnl|CDD|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system
protein KefC; Provisional.
Length = 621
Score = 25.7 bits (57), Expect = 9.7
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 41 LYYFGLTYLPQKYWAIAVPIYG-----MV----LLFVFVMFF 73
L+ GL PQ+ W + I+G MV LL +F M
Sbjct: 68 LFVIGLELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLL 109
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.142 0.448
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,781,641
Number of extensions: 614781
Number of successful extensions: 1349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1316
Number of HSP's successfully gapped: 206
Length of query: 130
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 44
Effective length of database: 7,123,158
Effective search space: 313418952
Effective search space used: 313418952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.1 bits)