RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13005
         (130 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.7 bits (87), Expect = 5e-04
 Identities = 35/162 (21%), Positives = 55/162 (33%), Gaps = 56/162 (34%)

Query: 4   STPSPTPSRANNGFVLYLAST-----IMFVV----YLIWA----FIPDSILYYF-GLTYL 49
             PS TP +       YL S      ++ V+    Y++ A    F P  +  Y  G T  
Sbjct: 220 ENPSNTPDKD------YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273

Query: 50  PQKYWAI--AVPI---------YGMVLLFVFVMFF--------YPCINMSLTPVRDSPNV 90
            Q    +  AV I         +  V   + V+FF        YP  ++  + + DS   
Sbjct: 274 SQ---GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL-- 328

Query: 91  MIDSFSLSDKKETVPGGIP--SACDIPISTVCEMLYLKNKKL 130
                   +  E VP   P  S  ++    V + +   N  L
Sbjct: 329 --------ENNEGVPS--PMLSISNLTQEQVQDYVNKTNSHL 360


>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
            binding, haloacid dehydrogenease superfamily, phosphate
            analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
            PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
            1mo8_A* 1q3i_A
          Length = 1028

 Score = 26.4 bits (59), Expect = 3.2
 Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 6/67 (8%)

Query: 7    SPTPSRANNGF---VLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGM 63
            +   S    G    +L         +    ++ P        +  L   +W  A P    
Sbjct: 944  TRRNSIFQQGMKNKILIFGLFEETALAAFLSYCP-GTDVALRMYPLKPSWWFCAFPY--S 1000

Query: 64   VLLFVFV 70
            +++F++ 
Sbjct: 1001 LIIFLYD 1007


>1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase,
          membrane protein, oxidoreductase; HET: HEM HEO; 3.50A
          {Escherichia coli} SCOP: f.25.1.1
          Length = 204

 Score = 26.1 bits (58), Expect = 3.6
 Identities = 6/20 (30%), Positives = 9/20 (45%)

Query: 16 GFVLYLASTIMFVVYLIWAF 35
          GF +YL S  +    L   +
Sbjct: 28 GFWIYLMSDCILFSILFATY 47


>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA
           splicing, transcription; NMR {Mus musculus}
          Length = 140

 Score = 25.7 bits (56), Expect = 4.2
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 75  PCINMSLTPVRDSPNVMIDSFSLSDKKETVPGGIPSACDIPI 116
           P   + L  V+   + +I+   + +KK  + G  P  CD  I
Sbjct: 31  PPPGLHLDVVKG--DKLIEKLIIDEKKYYLFGRNPDLCDFTI 70


>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type
            ATPase, membrane protein, hydrolase, aluminium fluoride,
            ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A
          Length = 1034

 Score = 26.1 bits (58), Expect = 4.5
 Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 18   VLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFV 70
            +L +A      +     + P  +   F    +  ++W + +P    +L+FV+ 
Sbjct: 964  ILVIAIVFQVCIGCFLCYCP-GMPNIFNFMPIRFQWWLVPMPF--GLLIFVYD 1013


>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane
           protein translocation protein- protein complex,
           ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
          Length = 429

 Score = 24.8 bits (55), Expect = 9.8
 Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 4/53 (7%)

Query: 22  ASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVMFFY 74
           A  ++ +   +  F+ +  +      + P   +   +     V   VF  +FY
Sbjct: 278 AQALLLIPSTLLNFVQNPFIKVIADMFQPGAIFYNFL----YVTFIVFFTYFY 326


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.142    0.448 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,964,777
Number of extensions: 105286
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 19
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (23.9 bits)