RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13005
         (130 letters)



>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
           transmembrane domain M {Rabbit (Oryctolagus cuniculus)
           [TaxId: 9986]}
          Length = 472

 Score = 25.0 bits (54), Expect = 3.2
 Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 18  VLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVMFFY 74
            L  +  +   ++ +  ++   +   F L  L    W + + I   V+    ++ F 
Sbjct: 410 WLLGSICLSMSLHFLILYVD-PLPMIFKLKALDLTQWLMVLKISLPVIGLDEILKFI 465


>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease
          protein MalF {Escherichia coli [TaxId: 562]}
          Length = 248

 Score = 24.4 bits (53), Expect = 4.6
 Identities = 11/58 (18%), Positives = 21/58 (36%)

Query: 15 NGFVLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVMF 72
             V YL   +      ++A     +       +  +K +A      GM  + +FV+F
Sbjct: 12 GLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLF 69


>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 195

 Score = 24.3 bits (52), Expect = 5.7
 Identities = 11/55 (20%), Positives = 17/55 (30%)

Query: 19  LYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVMFF 73
           L+  S     VY   + +    L   GL     +         G +LLF     +
Sbjct: 67  LFFFSGRQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGRRLW 121


>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c
          oxidase subunit I {Thermus thermophilus [TaxId: 274]}
          Length = 549

 Score = 23.8 bits (51), Expect = 8.8
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 16 GFVLYLASTIMFVVYLIWAFIPDSILYYFGLTYLPQKYWAIAVPIYGMVLLFVFVMFF 73
          GF+  +  ++      +     D+      L    Q Y+   + ++G++   VF   F
Sbjct: 15 GFLALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQG-LTLHGVLNAIVFTQLF 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.142    0.448 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 493,600
Number of extensions: 21317
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 12
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.5 bits)