BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13007
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 7 EDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVS 66
ED P H + +T +Y ++ V G GN VI R M TATN Y+F+LA++
Sbjct: 8 EDAQLEPAHISPAIPVIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALA 67
Query: 67 DLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICH 126
D L+ +Y+ + +P F + +C +V + + ++ T+T +V+RYIA+CH
Sbjct: 68 DALVTTTMPFQSTVYLMNSWP--FGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCH 125
Query: 127 P 127
P
Sbjct: 126 P 126
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 65.5 bits (158), Expect = 8e-12, Method: Composition-based stats.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 17 PLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIP 76
PL + + +Y+ + V G GN VI R+ M TATN Y+F+LA++D L+L +P
Sbjct: 121 PLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLL-TLP 179
Query: 77 SEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHP 127
+ I + + F +C V + + + T+TA +V+RY+AICHP
Sbjct: 180 FQGTDILLGF-WPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHP 229
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 9/134 (6%)
Query: 4 SQYEDLAWGPQHD-----PLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHT---A 55
S E GP D +Y VT IY+ + V G GN T +AR K + +
Sbjct: 10 STSESDTAGPNSDLDVNTDIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQST 69
Query: 56 TNYYLFSLAVSDLLMLFWGIPSEII-YIWHKYPYMFDETICIMVSFLSETSANATVLTIT 114
+Y+L SLA+SDLL+L +P E+ +IW +P+ F + C FL + AT L +
Sbjct: 70 VHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVA 129
Query: 115 AFTVERYIAICHPF 128
+ +V RY+AICHPF
Sbjct: 130 SLSVARYLAICHPF 143
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 13 PQHDPLYVIFPVTV--IYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLM 70
PQ ++ +T+ +Y I+ V G FGN VI R M TATN Y+F+LA++D L
Sbjct: 7 PQTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALA 66
Query: 71 LFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHP 127
+ Y+ +P F +C +V + + ++ T+ +V+RYIA+CHP
Sbjct: 67 TSTLPFQSVNYLMGTWP--FGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHP 121
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 18 LYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPS 77
L + +T +Y + G GN+ I R + TATN Y+F+LA++D L
Sbjct: 11 LALAIAITALYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADALATSTLPFQ 70
Query: 78 EIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHP 127
Y+ +P F E +C V + + ++ T+T +V+RYIA+CHP
Sbjct: 71 SAKYLMETWP--FGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHP 118
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 39 NLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMV 98
N T V ++K + T NY L +LAV+DL M+F G + + H Y ++F T C +
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FVFGPTGCNLQ 114
Query: 99 SFLSETSANATVLTITAFTVERYIAICHP 127
F + + ++ +ERY+ +C P
Sbjct: 115 GFFATLGGEIALWSLVVLAIERYVVVCKP 143
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 39 NLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMV 98
N T V ++K + T NY L +LAV+DL M+F G + + H Y ++F T C +
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FVFGPTGCNLE 114
Query: 99 SFLSETSANATVLTITAFTVERYIAICHP 127
F + + ++ +ERY+ +C P
Sbjct: 115 GFFATLGGEIALWSLVVLAIERYVVVCKP 143
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 39 NLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMV 98
N T V ++K + T NY L +LAV+DL M+F G + + H Y ++F T C +
Sbjct: 55 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FVFGPTGCNLE 113
Query: 99 SFLSETSANATVLTITAFTVERYIAICHP 127
F + + ++ +ERY+ +C P
Sbjct: 114 GFFATLGGEIALWSLVVLAIERYVVVCKP 142
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 39 NLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMV 98
N T V ++K + T NY L +LAV+DL M+F G + + H Y ++F T C +
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FVFGPTGCNLE 114
Query: 99 SFLSETSANATVLTITAFTVERYIAICHP 127
F + + ++ +ERY+ +C P
Sbjct: 115 GFFATLGGEIALWSLVVLAIERYVVVCKP 143
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 39 NLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMV 98
N T V ++K + T NY L +LAV+DL M+F G + + H Y ++F T C +
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FVFGPTGCNLE 114
Query: 99 SFLSETSANATVLTITAFTVERYIAICHP 127
F + + ++ +ERY+ +C P
Sbjct: 115 GFFATLGGEIALWSLVVLAIERYVVVCKP 143
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 39 NLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMV 98
N T V ++K + T NY L +LAV+DL M+F G + + H Y ++F T C +
Sbjct: 55 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FVFGPTGCNLE 113
Query: 99 SFLSETSANATVLTITAFTVERYIAICHP 127
F + + ++ +ERY+ +C P
Sbjct: 114 GFFATLGGEIALWSLVVLAIERYVVVCKP 142
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 16 DPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGI 75
D ++V+ V+ +I+L FGN+ IA+ + + T TNY++ SLA +DL+M +
Sbjct: 178 DEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVV 236
Query: 76 PSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
P +I K + F C + + A++ T+ V+RY AI PF
Sbjct: 237 PFGAAHILTK-TWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPF 288
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 2 NDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLF 61
N S D Q D ++V+ V+ +I+L FGN+ IA+ + + T TNY++
Sbjct: 15 NRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFIT 73
Query: 62 SLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERY 121
SLA +DL+M +P +I K + F C + + A++ T+ V+RY
Sbjct: 74 SLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRY 132
Query: 122 IAICHPF 128
AI PF
Sbjct: 133 FAITSPF 139
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 2 NDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLF 61
N S D Q D ++V+ V+ +I+L FGN+ IA+ + + T TNY++
Sbjct: 16 NRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFIT 74
Query: 62 SLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERY 121
SLA +DL+M +P +I K + F C + + A++ T+ V+RY
Sbjct: 75 SLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRY 133
Query: 122 IAICHPF 128
AI PF
Sbjct: 134 FAITSPF 140
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 2 NDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLF 61
N S D Q D ++V+ V+ +I+L FGN+ IA+ + + T TNY++
Sbjct: 23 NRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFIT 81
Query: 62 SLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERY 121
SLA +DL+M +P +I K + F C + + A++ T+ V+RY
Sbjct: 82 SLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRY 140
Query: 122 IAICHPF 128
AI PF
Sbjct: 141 FAITSPF 147
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 2 NDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLF 61
N S D Q D ++V+ V+ +I+L FGN+ IA+ + + T TNY++
Sbjct: 22 NRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFIT 80
Query: 62 SLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERY 121
SLA +DL+M +P +I K + F C + + A++ T+ V+RY
Sbjct: 81 SLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRY 139
Query: 122 IAICHPF 128
AI PF
Sbjct: 140 FAITSPF 146
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 2 NDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLF 61
N S D Q D ++V+ V+ +I+L FGN+ IA+ + + T TNY++
Sbjct: 23 NRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFIT 81
Query: 62 SLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERY 121
SLA +DL+M +P +I K + F C + + A++ T+ V+RY
Sbjct: 82 SLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRY 140
Query: 122 IAICHPF 128
AI PF
Sbjct: 141 FAITSPF 147
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 13 PQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLF 72
Q D ++V+ V+ +I+L FGN+ IA+ + + T TNY++ SLA +DL+M
Sbjct: 3 QQRDEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGL 61
Query: 73 WGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
+P +I K + F C + + A++ T+ V+RY AI PF
Sbjct: 62 AVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPF 116
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 13 PQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLF 72
Q D ++V+ V+ +I+L FGN+ IA+ + + T TNY++ SLA +DL+M
Sbjct: 2 QQRDEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGL 60
Query: 73 WGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
+P I K + F C + + A++ T+ V+RY AI PF
Sbjct: 61 AVVPFGAACILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPF 115
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 16 DPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGI 75
D ++V+ V+ +I+L FGN+ IA+ + + T TNY++ SLA +DL+M +
Sbjct: 1 DEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVV 59
Query: 76 PSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
P +I K + F C + + A++ T+ V+RY AI PF
Sbjct: 60 PFGAAHILTK-TWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPF 111
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 9 LAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDL 68
LA + V+F V V + LVT GN+ V I N+H+ T NY+LFSLA +DL
Sbjct: 12 LALTSPYKTFEVVFIVLVAGSLSLVT-IIGNILVMVSIKVNRHLQTVNNYFLFSLACADL 70
Query: 69 LMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
++ + + +Y Y + +C + L +NA+V+ + + +RY + P
Sbjct: 71 IIGVFSMNLYTLYTVIGY-WPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPL 129
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 27 IYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLML----FWGIPSEIIYI 82
IY II +TG GN +V+ K + + T+ Y L+V+DLL + FW + + +
Sbjct: 54 IYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAV--DAVAN 111
Query: 83 WHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICH 126
W+ F +C V + + ++V + +++RY+AI H
Sbjct: 112 WY-----FGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVH 150
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 27 IYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLML----FWGIPSEIIYI 82
IY II +TG GN +V+ K + + T+ Y L+V+DLL + FW + + +
Sbjct: 54 IYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAV--DAVAN 111
Query: 83 WHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICH 126
W+ F +C V + + ++V + +++RY+AI H
Sbjct: 112 WY-----FGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVH 150
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 27 IYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLML----FWGIPSEIIYI 82
IY II +TG GN +V+ K + + T+ Y L+V+DLL + FW + + +
Sbjct: 54 IYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAV--DAVAN 111
Query: 83 WHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICH 126
W+ F +C V + + ++V + +++RY+AI H
Sbjct: 112 WY-----FGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVH 150
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%)
Query: 28 YVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYP 87
Y +++ FGN C+ + + + + T TNY + SLAV+DLL+ +P +
Sbjct: 45 YCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGV 104
Query: 88 YMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHP 127
+ F C + L A++ + A +++RY A+ P
Sbjct: 105 WNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMP 144
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 31 ILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMF 90
I V GN+ C + N ++ TNY++ SLA +D+L+ IP I +
Sbjct: 16 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAITI---STGFCA 72
Query: 91 DETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
C+ ++ A +++ ++ A ++RYIAI P
Sbjct: 73 ACHGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPL 110
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 12 GPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLML 71
PQ PL V V+ I LVT NL + + +HT N Y+ SL+V+DL++
Sbjct: 5 SPQLMPL-----VVVLSTICLVTVGL-NLLVLYAVRSERKLHTVGNLYIVSLSVADLIVG 58
Query: 72 FWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
+P I+Y+ + +C+ + ++ A++ ++ ++RY ++ P
Sbjct: 59 AVVMPMNILYLLMS-KWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPL 114
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 15 HDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWG 74
H V+F + + LVT GN+ V NK + T NY+L SLA +DL++ G
Sbjct: 7 HTIWQVVFIAFLTGFLALVT-IIGNILVIVAFKVNKQLKTVNNYFLLSLACADLII---G 62
Query: 75 IPSEIIYIWH--KYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
+ S ++ + + C + + ++NA+V+ + + +RY +I P
Sbjct: 63 VISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPL 118
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 29 VIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPY 88
V++L+ GN+ I + + T TN ++ SLA +DL++ +P + + +
Sbjct: 21 VVLLIVA--GNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLV-VRGTW 77
Query: 89 MFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
++ +C + + L A++ T+ ++RY+AI PF
Sbjct: 78 LWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPF 117
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 29 VIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPY 88
V++L+ GN+ I + + T TN ++ SLA +DL++ +P + + +
Sbjct: 21 VVLLIVA--GNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLV-VRGTW 77
Query: 89 MFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
++ +C + + L A++ T+ ++RY+AI PF
Sbjct: 78 LWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPF 117
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 31 ILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMF 90
I V GN+ C + N ++ TNY++ SLA +D+ + IP I +
Sbjct: 41 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI---STGFCA 97
Query: 91 DETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
C+ ++ +++ ++ A ++RYIAI P
Sbjct: 98 ACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPL 135
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 45 VIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSET 104
+I +K M T TNY+L +LA ++ M + Y H Y + C +F
Sbjct: 56 IILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWY-YGLFYCKFHNFFPIA 114
Query: 105 SANATVLTITAFTVERYIAICHP 127
+ A++ ++TA +RY+AI HP
Sbjct: 115 AVFASIYSMTAVAFDRYMAIIHP 137
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 31 ILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMF 90
I V GN+ C + N ++ TNY++ SLA +D+ + IP I +
Sbjct: 16 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI---STGFCA 72
Query: 91 DETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
C+ ++ +++ ++ A ++RYIAI P
Sbjct: 73 ACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPL 110
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 27 IYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKY 86
+ + I V GN+ C + N ++ TNY++ SLA +D+ + IP I
Sbjct: 27 VELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI---ST 83
Query: 87 PYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
+ C+ ++ +++ ++ A ++RYIAI P
Sbjct: 84 GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPL 125
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 31 ILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMF 90
I V GN+ C + N ++ TNY++ S A +D+L+ IP I +
Sbjct: 16 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIAI---STGFCA 72
Query: 91 DETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
C+ ++ +++ ++ A ++RYIAI P
Sbjct: 73 ACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPL 110
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 88 YMFDETICIMVSFLSETSANATVLTITAFTVERYIAICH 126
++F +C +VS L E + + +L + +V+RY+AI H
Sbjct: 75 WIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVH 113
>pdb|3CA8|A Chain A, Crystal Structure Of Escherichia Coli Ydcf, An
S-Adenosyl-L-Methionine Utilizing Enzyme
pdb|3CA8|B Chain B, Crystal Structure Of Escherichia Coli Ydcf, An
S-Adenosyl-L-Methionine Utilizing Enzyme
Length = 266
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 31 ILVTGCFGNLCTCV--VIARNKHMHT-ATNYYLFSLAVSDLLMLFWGIPSEIIYI 82
+L++G G+ T + IA++ H +T T + ++D+ FW IP E I+I
Sbjct: 65 LLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATILADIAHQFWHIPHEKIWI 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.142 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,638,033
Number of Sequences: 62578
Number of extensions: 118504
Number of successful extensions: 353
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 42
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)