RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13007
(128 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 113 bits (286), Expect = 1e-31
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 11 WGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLM 70
P + I Y +I+VT GN+ +I +K M T TNY+L +LA ++ M
Sbjct: 22 PNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASM 81
Query: 71 LFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
+ Y H + + C +F + A++ ++TA +RY+AI HP
Sbjct: 82 AAFNTVVNFTYAVHNE-WYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPL 138
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 95.6 bits (238), Expect = 2e-24
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 17 PLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIP 76
PL + + +Y+ + V G GN VI R+ M TATN Y+F+LA++D L+L +P
Sbjct: 121 PLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLL-TLP 179
Query: 77 SEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
+ I + + F +C V + + + T+TA +V+RY+AICHP
Sbjct: 180 FQGTDILLGF-WPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPI 230
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 90.5 bits (225), Expect = 6e-23
Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 3/128 (2%)
Query: 1 MNDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYL 60
+ S +E + + + + ++++ G N T V ++K + T NY L
Sbjct: 20 VVRSPFEAPQYYLAEPWQFSM--LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYIL 77
Query: 61 FSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVER 120
+LAV+DL M+F G + + H Y F T C + F + + ++ +ER
Sbjct: 78 LNLAVADLFMVFGGFTTTLYTSLHGYFV-FGPTGCNLEGFFATLGGEIALWSLVVLAIER 136
Query: 121 YIAICHPF 128
Y+ +C P
Sbjct: 137 YVVVCKPM 144
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 82.7 bits (204), Expect = 7e-20
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 24 VTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLL-MLFWGIPSEIIYI 82
+ + I + GC GN + + K + T N ++ +LA SD L G P I
Sbjct: 37 LGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISC 96
Query: 83 WHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
+ K ++F C + F+ +++T+ +++RY I P
Sbjct: 97 FLKK-WIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPM 141
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 82.7 bits (204), Expect = 8e-20
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 11 WGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLM 70
+ I + +Y I+ V G FGN VI R M TATN Y+F+LA++D L
Sbjct: 8 QTGSPSMVTAIT-IMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALA 66
Query: 71 LFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
+P + + + F +C +V + + ++ T+ +V+RYIA+CHP
Sbjct: 67 TS-TLPFQSVNYLMGT-WPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPV 122
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 78.8 bits (194), Expect = 2e-18
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 2 NDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLF 61
+ D ++V+ V+ +I+L FGN+ IA+ + + T TNY++
Sbjct: 164 ITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFIT 222
Query: 62 SLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERY 121
SLA +DL+M +P +I K F C + + A++ T+ V+RY
Sbjct: 223 SLACADLVMGLAVVPFGAAHILTKTWT-FGNFWCEFWTSIDVLCVTASIETLCVIAVDRY 281
Query: 122 IAICHPF 128
AI PF
Sbjct: 282 FAITSPF 288
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 76.5 bits (188), Expect = 1e-17
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 24 VTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIW 83
+ IY II +TG GN +V+ K + + T+ Y L+V+DLL + +P +
Sbjct: 51 LPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAV 109
Query: 84 HKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHP 127
+ F +C V + + ++V + +++RY+AI H
Sbjct: 110 ANWY--FGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHA 151
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 75.1 bits (184), Expect = 4e-17
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 1 MNDSQY---EDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATN 57
M+DS LA + V+F V V + LVT GN+ V I N+H+ T N
Sbjct: 1 MDDSTDSSDNSLALTSPYKTFEVVFIVLVAGSLSLVT-IIGNILVMVSIKVNRHLQTVNN 59
Query: 58 YYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFT 117
Y+LFSLA +DL++ + + +Y Y + +C + L +NA+V+ + +
Sbjct: 60 YFLFSLACADLIIGVFSMNLYTLYTVIGY-WPLGPVVCDLWLALDYVVSNASVMNLLIIS 118
Query: 118 VERYIAICHPF 128
+RY + P
Sbjct: 119 FDRYFCVTKPL 129
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 74.7 bits (183), Expect = 5e-17
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 2 NDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLF 61
N S D Q D ++V+ V+ +I+L FGN+ IA+ + + T TNY++
Sbjct: 22 NRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFIT 80
Query: 62 SLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERY 121
SLA +DL+M +P +I K + F C + + A++ T+ V+RY
Sbjct: 81 SLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRY 139
Query: 122 IAICHPF 128
AI PF
Sbjct: 140 FAITSPF 146
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 74.8 bits (183), Expect = 5e-17
Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Query: 24 VTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIW 83
+ + I V GN+ C + N ++ TNY++ SLA +D+ + IP I
Sbjct: 24 YITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST 83
Query: 84 HKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
+ C+ ++ +++ ++ A ++RYIAI P
Sbjct: 84 G---FCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPL 125
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 74.9 bits (183), Expect = 5e-17
Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 16 DPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGI 75
D I +V++++I N+ + I + K H Y++ +LA+SDLL
Sbjct: 58 DKENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYT 117
Query: 76 PSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHP 127
+ ++ Y + + +A+V ++ A +ERYI +
Sbjct: 118 ANLLLSGATTYK--LTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKM 167
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 73.3 bits (179), Expect = 2e-16
Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 2/128 (1%)
Query: 1 MNDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYL 60
+N + + + G + + Y +++ FGN C+ + + + + T TNY +
Sbjct: 20 LNYTCGAENSTGASQARPHAY--YALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLV 77
Query: 61 FSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVER 120
SLAV+DLL+ +P + + F C + L A++ + A +++R
Sbjct: 78 VSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDR 137
Query: 121 YIAICHPF 128
Y A+ P
Sbjct: 138 YTAVVMPV 145
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 71.6 bits (175), Expect = 6e-16
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 17 PLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIP 76
P+ + + I V GN+ C + N ++ TNY++ SLA +D+ + IP
Sbjct: 27 PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP 86
Query: 77 SEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
I + C+ ++ +++ ++ A ++RYIAI P
Sbjct: 87 FAITISTG---FCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPL 135
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 69.0 bits (168), Expect = 5e-15
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 20 VIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEI 79
++ V V+ I LVT NL + + +HT N Y+ SL+V+DL++ +P I
Sbjct: 8 LMPLVVVLSTICLVT-VGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNI 66
Query: 80 IYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
+Y+ + +C+ + ++ A++ ++ ++RY ++ P
Sbjct: 67 LYLLMSK-WSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPL 114
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 67.1 bits (164), Expect = 2e-14
Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 25 TVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWH 84
++ +++L+ GN+ I + + T TN ++ SLA +DL++ +P +
Sbjct: 16 LLMALVVLLI-VAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR 74
Query: 85 KYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
+ +C + + L A++ T+ ++RY+AI PF
Sbjct: 75 GTWL-WGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPF 117
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.042
Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 35/95 (36%)
Query: 9 LAW----GPQHDPLYVI-----FPVTVI-----YVIIL----------------VTGCFG 38
L W D Y++ P+ + YV+ TG
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 39 NLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFW 73
L T V IA + +++ + +LF+
Sbjct: 276 GLVTAVAIAETD---SWESFF--VSVRKAITVLFF 305
Score = 30.0 bits (67), Expect = 0.19
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 26/95 (27%)
Query: 46 IARN------KHMHTATNYYLFSLA--VSD----LLMLFWGIPSEII---YIWHKYPYMF 90
A++ H + Y FS+ V + L + F G + I Y + +
Sbjct: 1641 AAQDVWNRADNHF---KDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIV 1697
Query: 91 DETICIMVSF--LSETSANAT------VLTITAFT 117
D + F ++E S + T +L+ T FT
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Score = 25.8 bits (56), Expect = 5.7
Identities = 16/87 (18%), Positives = 24/87 (27%), Gaps = 28/87 (32%)
Query: 50 KHMHTATNYY-----------------LFSLAVSD----LLMLF--WGIP----SEIIYI 82
K NY LF AV + L+ +F G E+ +
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFR-AVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 83 WHKYPYMFDETICIMVSFLSETSANAT 109
+ Y + + I LSE
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTL 203
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 25.2 bits (55), Expect = 7.5
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 63 LAVSDLLMLFWGIPSEIIYIW-HKYPYM 89
+AVS+ P+EI W YP +
Sbjct: 146 IAVSEASWFTSERPAEIEDFWMDAYPEI 173
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 24.8 bits (54), Expect = 8.8
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 63 LAVSDLLMLFWGIPSEIIYIWHK-YPYMFD 91
LAVS+ P+EI W YP +
Sbjct: 146 LAVSECSWFTDERPAEINDFWMDAYPEIDT 175
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.142 0.470
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,023,445
Number of extensions: 105345
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 25
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.9 bits)