RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13007
         (128 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 55.7 bits (133), Expect = 7e-11
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 1/112 (0%)

Query: 17  PLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIP 76
             +    +     ++++ G   N  T  V  ++K + T  NY L +LAV+DL M+F G  
Sbjct: 33  EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFT 92

Query: 77  SEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
           + +    H Y   F  T C +  F +       + ++    +ERY+ +C P 
Sbjct: 93  TTLYTSLHGYFV-FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPM 143


>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 75

 Score = 23.1 bits (49), Expect = 5.5
 Identities = 6/42 (14%), Positives = 9/42 (21%)

Query: 67  DLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANA 108
           D+   F         +               V+F SE     
Sbjct: 15  DVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.142    0.470 

Gapped
Lambda     K      H
   0.267   0.0495    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 511,963
Number of extensions: 21390
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 8
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 48 (22.8 bits)