BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13008
(638 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E04|A Chain A, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|B Chain B, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|C Chain C, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|D Chain D, Crystal Structure Of Human Fumarate Hydratase
Length = 490
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/465 (74%), Positives = 396/465 (85%), Gaps = 1/465 (0%)
Query: 3 KDGVRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQV 62
++ RIE D+FGEL+VPNDKYYGAQTVRS +NF IGG +ERMP +I A GILK+AAA+V
Sbjct: 27 QNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEV 86
Query: 63 NKGFGLDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEML 122
N+ +GLD KIA+ I KAADEV GKL DHFPL +WQTGSGTQTNMNVNEVISNRAIEML
Sbjct: 87 NQDYGLDPKIANAIMKAADEVAEGKL-NDHFPLVVWQTGSGTQTNMNVNEVISNRAIEML 145
Query: 123 GGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEF 182
GG+LGSK PVHPNDHVNK QSSNDTFPTAMHIA A+E+H LL LQ LHDALD KS+EF
Sbjct: 146 GGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEF 205
Query: 183 QNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNT 242
IIKIGRTHTQDA PLTLGQEFSGYV Q+KY + R+K +PR+Y+LA GGTAVGTGLNT
Sbjct: 206 AQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAVGTGLNT 265
Query: 243 YVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFL 302
+GFAE +++ LTGLPF +APNKFEALA+HDALVE+SGA+NT A SLMKIANDIRFL
Sbjct: 266 RIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFL 325
Query: 303 GSGPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFEL 362
GSGPRSGLGEL LPENEPGSSIMPGKVNPTQ EA+TMVAAQVMGNHVAVTVGGSNGHFEL
Sbjct: 326 GSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFEL 385
Query: 363 NVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGY 422
NVFKP+++ NVL S RLL D + SFT CV GI N + I K +N+SLMLVTALNPHIGY
Sbjct: 386 NVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGY 445
Query: 423 DKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPE 467
DKAA+IAK A+K G TLKE A++LGYLT +++D+WVKP+ MLGP+
Sbjct: 446 DKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGPK 490
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase
Length = 488
Score = 603 bits (1555), Expect = e-172, Method: Compositional matrix adjust.
Identities = 300/462 (64%), Positives = 362/462 (78%), Gaps = 3/462 (0%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
R E D+FGE+ VP DKY+GAQT RS NF IGG ERMP ++ A G+LKK+AA VN+
Sbjct: 29 RTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESL 88
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
G LD KI+ I +AADEV SGKL +DHFPL ++QTGSGTQ+NMN NEVISNRAIE+LGGK
Sbjct: 89 GGLDPKISKAIQQAADEVASGKL-DDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGK 147
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
+GSK VHPN+H N+ QSSNDTFPT MHIA +L+I N L+ L L +AL+ KS+EF +I
Sbjct: 148 IGSKQ-VHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHI 206
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
+KIGRTH QDATPLTLGQEFSGYV Q++ GI+RV +L L LA GGTAVGTGLNT G
Sbjct: 207 VKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPG 266
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
F ++IS+ TGL F++APN+FEALA+HDA+VE SGALNT+A SL KIA DIR+LGSG
Sbjct: 267 FDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSG 326
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
PR G EL LPENEPGSSIMPGKVNPTQ EALT V QVMGN+ A+T GS G FELNVF
Sbjct: 327 PRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVF 386
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
KP++++N+L SIRL+ D SF CV GI NE I + + SLMLVTALNP IGYD A
Sbjct: 387 KPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAA 446
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPE 467
+++AK+A+K GITLKE+A++LG LTE+E+D+WV PE MLGP+
Sbjct: 447 SKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHMLGPK 488
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
Length = 482
Score = 599 bits (1544), Expect = e-171, Method: Compositional matrix adjust.
Identities = 297/459 (64%), Positives = 359/459 (78%), Gaps = 4/459 (0%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
RIE DSFGE+++ Y+GAQT RSL NF I ++MP+ +I A+ ILKK AAQVN F
Sbjct: 26 RIESDSFGEIQIEEKFYWGAQTQRSLNNFKIS--KQKMPKILIRALAILKKCAAQVNYEF 83
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
G L+ KIA +I KA D +++G+ +ED+FPL +WQTGSGTQTNMN+NEVI++ A E L GK
Sbjct: 84 GDLEYKIATSIDKAIDRILAGE-FEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGK 142
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
G K PVHPNDHVNK QSSND+FPTAMHIA L +L+ +L L L KS+++ I
Sbjct: 143 KGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWDKI 202
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
IKIGRTH QDATPLTL QEFSGY+TQI+Y +ER++D L ++Y LA GGTAVGTG+N+ +G
Sbjct: 203 IKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAVGTGINSKIG 262
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
F Q+++E T PFK+APNKFE+LA+HDALVE SG LNT+AVSLMKIANDIR LGSG
Sbjct: 263 FDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSG 322
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
PR GLGEL LPENEPGSSIMPGKVNPTQVEALTMV QVMGNHV VT+ GSNGH ELNVF
Sbjct: 323 PRCGLGELHLPENEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELNVF 382
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
KP+I+ N+L+SI LL+D+ SF T CV G+ PN I + SLMLVT LNPHIGYD A
Sbjct: 383 KPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSLMLVTVLNPHIGYDNA 442
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKML 464
A+IAK A+K GITLKEAA KL +L+E+E+D+ V PEKM+
Sbjct: 443 AKIAKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPEKMI 481
>pdb|4HGV|A Chain A, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|B Chain B, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|C Chain C, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|D Chain D, Crystal Structure Of A Fumarate Hydratase
Length = 495
Score = 577 bits (1486), Expect = e-164, Method: Compositional matrix adjust.
Identities = 289/461 (62%), Positives = 344/461 (74%), Gaps = 4/461 (0%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
R E D+FG +EV +D+Y+GAQ RSL NF IG E+ P AI+ A+GI+K+AAA+ N
Sbjct: 37 RTETDTFGPIEVASDRYWGAQAQRSLGNFKIG--WEKQPLAIVRALGIVKQAAARANXAL 94
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
G LD I D I KAA EVI GKL ++HFPL +WQTGSGTQ+N N NEV+SNRAIE+LGG
Sbjct: 95 GRLDPAIGDAIVKAAQEVIDGKL-DEHFPLVVWQTGSGTQSNXNANEVVSNRAIELLGGV 153
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
GSK PVHPNDHVN QSSNDT+PTA HIA A + + LL +L+ LH AL++K + F +I
Sbjct: 154 XGSKKPVHPNDHVNXSQSSNDTYPTAXHIACAERVIHDLLPALKHLHKALEEKVKAFDHI 213
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
IKIGRTHTQDATPLTLGQEFSGY Q+ I+R++ TLP L +LA GGTAVGTGLN VG
Sbjct: 214 IKIGRTHTQDATPLTLGQEFSGYAAQVASSIKRIEXTLPGLCELAQGGTAVGTGLNAPVG 273
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
FAE + I+ +TG+ F SAPNKFEALA+HD+ V GA+N A +L KIANDIRFLGSG
Sbjct: 274 FAEKVAEEIAAITGIGFTSAPNKFEALAAHDSXVFSHGAINATAAALFKIANDIRFLGSG 333
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
PRSGLGEL LPENEPGSSI PGKVNPTQ EALT V QV GNH A+T GS GHFELNV+
Sbjct: 334 PRSGLGELSLPENEPGSSIXPGKVNPTQCEALTQVCVQVFGNHAALTFAGSQGHFELNVY 393
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
PL N L+S++LLAD SFT CV GI ED I ++ SL LVTAL P IGYD A
Sbjct: 394 NPLXAYNFLQSVQLLADAAISFTDNCVVGIEAREDNIKAALDRSLXLVTALAPKIGYDNA 453
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGP 466
A+IAK A+K G TL+E AV GY+T++E+D V+PE +GP
Sbjct: 454 AKIAKTAHKNGTTLREEAVGGGYVTDEEFDAVVRPETXIGP 494
>pdb|3TV2|A Chain A, Structure Of A Class Ii Fumarate Hydratase From
Burkholderia Pseudomallei
Length = 459
Score = 572 bits (1474), Expect = e-163, Method: Compositional matrix adjust.
Identities = 284/460 (61%), Positives = 344/460 (74%), Gaps = 4/460 (0%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
R+E+D+FGE+ VP + +GAQT RSL NF I E + PE +I A+ ++K+AAA VN
Sbjct: 1 RMERDTFGEIAVPAARLWGAQTQRSLQNFKISTEKQS-PE-LIHALALIKRAAAAVNLEL 58
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
G L A+ I AADE+I+G+ + D FPL++WQTGSGTQTNMN+NEVI+NRA E+LGG+
Sbjct: 59 GVLAQDKANAIVAAADEIIAGR-HADEFPLAVWQTGSGTQTNMNLNEVIANRASELLGGE 117
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
G VHPND VN+ QSSND FPTAMHIA A I + LL +L+ L LD K+ F +I
Sbjct: 118 RGESRAVHPNDDVNRGQSSNDVFPTAMHIAAARAIVDHLLPALRTLRATLDAKAAAFADI 177
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
+KIGRTH QDATPLTLGQEFSGYV Q+ GI V+ LP LY+LA GGTAVGTGLN +
Sbjct: 178 VKIGRTHLQDATPLTLGQEFSGYVAQLDQGIRHVEAALPHLYELAQGGTAVGTGLNAHPK 237
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
FA I LTGLPF SAPNKFE +A+ DALV GAL TVA SLMKIANDIR+L SG
Sbjct: 238 FAAGVAAEIGRLTGLPFVSAPNKFEVMAAADALVFAHGALKTVAASLMKIANDIRWLASG 297
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
PR GLGEL +PENEPGSSIMPGKVNPTQ EA+TM+ QV GN VAV GG++G+FELNVF
Sbjct: 298 PRCGLGELSIPENEPGSSIMPGKVNPTQSEAVTMLCCQVFGNDVAVNFGGASGNFELNVF 357
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
+P+I NVL+S+RLLAD + F C GI PN I +N+SLMLVTALNPHIGYDKA
Sbjct: 358 RPMIAHNVLQSVRLLADGAQGFNDHCAVGIEPNRARIDALLNESLMLVTALNPHIGYDKA 417
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLG 465
A+IAK A+K G TLK AA+ LGY+T+ ++D+WV+PE M+G
Sbjct: 418 AQIAKKAHKEGTTLKAAALALGYVTDAQFDEWVRPEHMVG 457
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
pdb|1YFE|A Chain A, Crystal Structure Of Apo Fumarase C From Escherichia Coli
Length = 467
Score = 550 bits (1417), Expect = e-157, Method: Compositional matrix adjust.
Identities = 271/461 (58%), Positives = 358/461 (77%), Gaps = 4/461 (0%)
Query: 6 VRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKG 65
VR EKDS G ++VP DK +GAQT RSL +F I +E+MP ++I A+ + K+AAA+VN+
Sbjct: 4 VRSEKDSMGAIDVPADKLWGAQTQRSLEHFRI--STEKMPTSLIHALALTKRAAAKVNED 61
Query: 66 FGLDSK-IADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGG 124
GL S+ A I +AADEV++G+ ++D FPL+IWQTGSGTQ+NMN+NEV++NRA E+LGG
Sbjct: 62 LGLLSEEKASAIRQAADEVLAGQ-HDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGG 120
Query: 125 KLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQN 184
G + VHPND VNK QSSND FPTAMH+A L + +L+ L+ L L++KS+ F +
Sbjct: 121 VRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFAD 180
Query: 185 IIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYV 244
I+KIGRTH QDATPLTLGQE SG+V +++ ++ ++ +LP + +LA+GGTAVGTGLNT+
Sbjct: 181 IVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHP 240
Query: 245 GFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGS 304
+A ++ +T PF +APNKFEALA+ DALV+ GAL +A SLMKIAND+R+L S
Sbjct: 241 EYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLAS 300
Query: 305 GPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNV 364
GPR G+GE+ +PENEPGSSIMPGKVNPTQ EALTM+ QVMGN VA+ +GG++G+FELNV
Sbjct: 301 GPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNV 360
Query: 365 FKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDK 424
F+P+++ N L+S+RLLAD ESF C GI PN + I + +N+SLMLVTALN HIGYDK
Sbjct: 361 FRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDK 420
Query: 425 AAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLG 465
AAEIAK A+K G+TLK AA+ LGYL+E E+D WV+PE+M+G
Sbjct: 421 AAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
Length = 472
Score = 550 bits (1416), Expect = e-156, Method: Compositional matrix adjust.
Identities = 271/461 (58%), Positives = 358/461 (77%), Gaps = 4/461 (0%)
Query: 6 VRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKG 65
VR EKDS G ++VP DK +GAQT RSL +F I +E+MP ++I A+ + K+AAA+VN+
Sbjct: 4 VRSEKDSMGAIDVPADKLWGAQTQRSLEHFRI--STEKMPTSLIHALALTKRAAAKVNED 61
Query: 66 FGLDSK-IADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGG 124
GL S+ A I +AADEV++G+ ++D FPL+IWQTGSGTQ+NMN+NEV++NRA E+LGG
Sbjct: 62 LGLLSEEKASAIRQAADEVLAGQ-HDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGG 120
Query: 125 KLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQN 184
G + VHPND VNK QSSND FPTAMH+A L + +L+ L+ L L++KS+ F +
Sbjct: 121 VRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFAD 180
Query: 185 IIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYV 244
I+KIGRTH QDATPLTLGQE SG+V +++ ++ ++ +LP + +LA+GGTAVGTGLNT+
Sbjct: 181 IVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHP 240
Query: 245 GFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGS 304
+A ++ +T PF +APNKFEALA+ DALV+ GAL +A SLMKIAND+R+L S
Sbjct: 241 EYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLAS 300
Query: 305 GPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNV 364
GPR G+GE+ +PENEPGSSIMPGKVNPTQ EALTM+ QVMGN VA+ +GG++G+FELNV
Sbjct: 301 GPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNV 360
Query: 365 FKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDK 424
F+P+++ N L+S+RLLAD ESF C GI PN + I + +N+SLMLVTALN HIGYDK
Sbjct: 361 FRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDK 420
Query: 425 AAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLG 465
AAEIAK A+K G+TLK AA+ LGYL+E E+D WV+PE+M+G
Sbjct: 421 AAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli
pdb|1KQ7|B Chain B, E315q Mutant Form Of Fumarase C From E.Coli
Length = 467
Score = 549 bits (1414), Expect = e-156, Method: Compositional matrix adjust.
Identities = 270/461 (58%), Positives = 358/461 (77%), Gaps = 4/461 (0%)
Query: 6 VRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKG 65
VR EKDS G ++VP DK +GAQT RSL +F I +E+MP ++I A+ + K+AAA+VN+
Sbjct: 4 VRSEKDSMGAIDVPADKLWGAQTQRSLEHFRI--STEKMPTSLIHALALTKRAAAKVNED 61
Query: 66 FGLDSK-IADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGG 124
GL S+ A I +AADEV++G+ ++D FPL+IWQTGSGTQ+NMN+NEV++NRA E+LGG
Sbjct: 62 LGLLSEEKASAIRQAADEVLAGQ-HDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGG 120
Query: 125 KLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQN 184
G + VHPND VNK QSSND FPTAMH+A L + +L+ L+ L L++KS+ F +
Sbjct: 121 VRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFAD 180
Query: 185 IIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYV 244
I+KIGRTH QDATPLTLGQE SG+V +++ ++ ++ +LP + +LA+GGTAVGTGLNT+
Sbjct: 181 IVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHP 240
Query: 245 GFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGS 304
+A ++ +T PF +APNKFEALA+ DALV+ GAL +A SLMKIAND+R+L S
Sbjct: 241 EYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLAS 300
Query: 305 GPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNV 364
GPR G+GE+ +PEN+PGSSIMPGKVNPTQ EALTM+ QVMGN VA+ +GG++G+FELNV
Sbjct: 301 GPRCGIGEISIPENQPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNV 360
Query: 365 FKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDK 424
F+P+++ N L+S+RLLAD ESF C GI PN + I + +N+SLMLVTALN HIGYDK
Sbjct: 361 FRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDK 420
Query: 425 AAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLG 465
AAEIAK A+K G+TLK AA+ LGYL+E E+D WV+PE+M+G
Sbjct: 421 AAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
Length = 467
Score = 548 bits (1411), Expect = e-156, Method: Compositional matrix adjust.
Identities = 270/461 (58%), Positives = 358/461 (77%), Gaps = 4/461 (0%)
Query: 6 VRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKG 65
VR EKDS G ++VP DK +GAQT RSL +F I +E+MP ++I A+ + K+AAA+VN+
Sbjct: 4 VRSEKDSMGAIDVPADKLWGAQTQRSLEHFRI--STEKMPTSLIHALALTKRAAAKVNED 61
Query: 66 FGLDSK-IADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGG 124
GL S+ A I +AADEV++G+ ++D FPL+IWQTGSGTQ+NMN+NEV++NRA E+LGG
Sbjct: 62 LGLLSEEKASAIRQAADEVLAGQ-HDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGG 120
Query: 125 KLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQN 184
G + VHPND VNK QSSND FPTAMH+A L + +L+ L+ L L++KS+ F +
Sbjct: 121 VRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFAD 180
Query: 185 IIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYV 244
I+KIGRT+ QDATPLTLGQE SG+V +++ ++ ++ +LP + +LA+GGTAVGTGLNT+
Sbjct: 181 IVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHP 240
Query: 245 GFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGS 304
+A ++ +T PF +APNKFEALA+ DALV+ GAL +A SLMKIAND+R+L S
Sbjct: 241 EYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLAS 300
Query: 305 GPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNV 364
GPR G+GE+ +PENEPGSSIMPGKVNPTQ EALTM+ QVMGN VA+ +GG++G+FELNV
Sbjct: 301 GPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNV 360
Query: 365 FKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDK 424
F+P+++ N L+S+RLLAD ESF C GI PN + I + +N+SLMLVTALN HIGYDK
Sbjct: 361 FRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDK 420
Query: 425 AAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLG 465
AAEIAK A+K G+TLK AA+ LGYL+E E+D WV+PE+M+G
Sbjct: 421 AAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
Length = 467
Score = 548 bits (1411), Expect = e-156, Method: Compositional matrix adjust.
Identities = 270/461 (58%), Positives = 358/461 (77%), Gaps = 4/461 (0%)
Query: 6 VRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKG 65
VR EKDS G ++VP DK +GAQT RSL +F I +E+MP ++I A+ + K+AAA+VN+
Sbjct: 4 VRSEKDSMGAIDVPADKLWGAQTQRSLEHFRI--STEKMPTSLIHALALTKRAAAKVNED 61
Query: 66 FGLDSK-IADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGG 124
GL S+ A I +AADEV++G+ ++D FPL+IWQTGSGTQ+NMN+NEV++NRA E+LGG
Sbjct: 62 LGLLSEEKASAIRQAADEVLAGQ-HDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGG 120
Query: 125 KLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQN 184
G + V+PND VNK QSSND FPTAMH+A L + +L+ L+ L L++KS+ F +
Sbjct: 121 VRGMERKVNPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFAD 180
Query: 185 IIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYV 244
I+KIGRTH QDATPLTLGQE SG+V +++ ++ ++ +LP + +LA+GGTAVGTGLNT+
Sbjct: 181 IVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHP 240
Query: 245 GFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGS 304
+A ++ +T PF +APNKFEALA+ DALV+ GAL +A SLMKIAND+R+L S
Sbjct: 241 EYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLAS 300
Query: 305 GPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNV 364
GPR G+GE+ +PENEPGSSIMPGKVNPTQ EALTM+ QVMGN VA+ +GG++G+FELNV
Sbjct: 301 GPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNV 360
Query: 365 FKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDK 424
F+P+++ N L+S+RLLAD ESF C GI PN + I + +N+SLMLVTALN HIGYDK
Sbjct: 361 FRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDK 420
Query: 425 AAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLG 465
AAEIAK A+K G+TLK AA+ LGYL+E E+D WV+PE+M+G
Sbjct: 421 AAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
pdb|1VDK|B Chain B, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
Length = 466
Score = 513 bits (1322), Expect = e-146, Method: Compositional matrix adjust.
Identities = 262/461 (56%), Positives = 330/461 (71%), Gaps = 3/461 (0%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
RIE+D+ GE+ VP DKY+GAQT RSL NF IG + RMP II A G+LKKAAA+ N
Sbjct: 4 RIERDTMGEVRVPADKYWGAQTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLEL 63
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
G L +IA I +AA+EV+ GK ++DHFPL ++QTGSGTQTNMNVNEVI+NRA E+LG
Sbjct: 64 GELPEEIAKAIIQAAEEVVQGK-WDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKP 122
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
LGSK HPNDHVN+ QSSNDTFPTAM++AVAL +H RL +++ L K+Q F I
Sbjct: 123 LGSKY-AHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQI 181
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
+K+GRTH DA P+TLGQE + Q+K + VK+ LY LAIGGTAVGTGLN +
Sbjct: 182 VKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHPR 241
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
F E + ++E TGLPF+ A N+F ALA+HD LV V GA+ T+A +LMKI ND+R+L SG
Sbjct: 242 FGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASG 301
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
P +G+GE+ +P NEPGSSIMPGKVNPTQVEALTMV +V GN V GS G+F+LNV+
Sbjct: 302 PYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVY 361
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
KP++ + L SI LLAD SF GI PN + I +++ + ML TALN IGYDKA
Sbjct: 362 KPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDKA 421
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGP 466
AEI K A K TLK+AA++LGYLTE+E+D+ V P ++ P
Sbjct: 422 AEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKP 462
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/462 (45%), Positives = 301/462 (65%), Gaps = 5/462 (1%)
Query: 6 VRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKG 65
VRIEKD GE E+P D YYG QT+R+ NFPI G R+ +I ++GI+KK+AA N
Sbjct: 5 VRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGY--RIHPELIKSLGIVKKSAALANME 62
Query: 66 FGL-DSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGG 124
GL D ++ I KAADEVI GK + D F + Q G+GT NMN NEVI+NRA+E++G
Sbjct: 63 VGLLDKEVGQYIVKAADEVIEGK-WNDQFIVDPIQGGAGTSINMNANEVIANRALELMGE 121
Query: 125 KLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQN 184
+ G+ + PN HVN QS+ND FPTA HIAV L + N+L+ + + + KK+ EF
Sbjct: 122 EKGNYSKISPNSHVNMSQSTNDAFPTATHIAV-LSLLNQLIETTKYMQQEFMKKADEFAG 180
Query: 185 IIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYV 244
+IK+GRTH QDA P+ LGQEF Y I IER+ +T LY + +G TAVGTGLN
Sbjct: 181 VIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADP 240
Query: 245 GFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGS 304
+ T+ +++ +G P +SA + +A + D EVS AL +++ KIAND+R + S
Sbjct: 241 EYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMAS 300
Query: 305 GPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNV 364
GPR+GL E+ LP +PGSSIMPGKVNP E + VA QV GN + +T G FELNV
Sbjct: 301 GPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNV 360
Query: 365 FKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDK 424
+P++ N+++SI ++ + +SFT C+ GI NE+ + ++V S+ ++TA+NPH+GY+
Sbjct: 361 MEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYET 420
Query: 425 AAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGP 466
AA++A+ AY TG +++E +K G LTE++ ++ + P +M+ P
Sbjct: 421 AAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHP 462
>pdb|3QBP|A Chain A, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|B Chain B, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|C Chain C, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|D Chain D, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
Length = 478
Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust.
Identities = 222/447 (49%), Positives = 294/447 (65%), Gaps = 10/447 (2%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
RIE D+ GE+ VP + AQT R++ NFPI G + A I A+G+LK A AQVN
Sbjct: 20 RIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRG--LERAQIRALGLLKGACAQVNMDL 77
Query: 67 GLDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKL 126
GL + AA I+ ++D FP+ ++QTGSGT +NMN NEVI++ + G
Sbjct: 78 GLLAPEKAEAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIAS-----IAGAN 132
Query: 127 GSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNII 186
G VHPND VN QSSNDTFPTA HIA + L+ +L++L DAL K+ E+Q+++
Sbjct: 133 GVA--VHPNDDVNMSQSSNDTFPTATHIAATEAAVSHLIPALEILQDALATKALEWQSVV 190
Query: 187 KIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGF 246
K GRTH DA P+TLGQEFSGY QI+ GIERV+ TLPRL +LAIGGTAVGTGLN GF
Sbjct: 191 KSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRATLPRLGELAIGGTAVGTGLNAPEGF 250
Query: 247 AENCTQRISELTGLP-FKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
+ TGLP ++A N FEA A+ D LVE SGAL T+AVSL KIANDIR++GSG
Sbjct: 251 GVKVVSVLVSQTGLPQLRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSG 310
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
P +GL E++LP+ +PGSSIMPGKVNP EA+T VAAQV+GN AV GG+NG FELNV+
Sbjct: 311 PLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAVAWGGANGAFELNVY 370
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
P++ N+L S LL + ++ F +C+ G+ N + + + S +VT LN IGY++A
Sbjct: 371 IPMMARNILESFTLLTNVSKLFAQRCIAGLTANAEHLRELAESSPSIVTPLNSAIGYEEA 430
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQ 452
A +AK A K T+++ + G + ++
Sbjct: 431 AAVAKQALKERKTIRQTVIDRGLIGDK 457
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii
Mycobacterium Smegmatis
Length = 489
Score = 409 bits (1052), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/448 (49%), Positives = 299/448 (66%), Gaps = 12/448 (2%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
RIE D+ GE+ VP D + AQT R++ NFPI + I A+G+LK A AQVNK
Sbjct: 30 RIEHDTMGEVRVPKDALWRAQTQRAVENFPISFRG--LERTQIRALGLLKAACAQVNKDL 87
Query: 67 GL-DSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
GL D + AD I AA E+ GK ++D FP+ ++QTGSGT +NMN NEVI++ A
Sbjct: 88 GLLDPEKADAIIAAAGEIAEGK-HDDQFPIDVFQTGSGTSSNMNTNEVIASIAA------ 140
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
+ VHPNDHVN QSSNDTFPTA HIA L+ +L++LH +L K+++++ +
Sbjct: 141 -ANGVTVHPNDHVNMSQSSNDTFPTATHIAATEAAVRHLIPALEVLHASLAAKAKQWRTV 199
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
+K GRTH DA P+TLGQEF GY QI+ GIERVK TLPRL +LAIGGTAVGTGLN G
Sbjct: 200 VKSGRTHLMDAVPVTLGQEFGGYARQIEAGIERVKATLPRLGELAIGGTAVGTGLNAPEG 259
Query: 246 FAENCTQRISELTGLP-FKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGS 304
F + + TGL ++A + FEA A+ D LVE SGAL T+AVSL KIANDIR++GS
Sbjct: 260 FGAKVVEVLVNETGLAELRTAVDSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGS 319
Query: 305 GPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNV 364
GP +GL E++LP+ +PGSSIMPGKVNP EA+T VA QV+GN A+ GG++G FELNV
Sbjct: 320 GPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVACQVVGNDAAIAFGGASGAFELNV 379
Query: 365 FKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDK 424
+ P++ N+L S LL++ + F +C+ G++ NE+ + + S +VT LN IGY++
Sbjct: 380 YIPMMARNLLESFTLLSNVSRLFAERCIDGLVANEERLRELAESSPSIVTPLNSAIGYEE 439
Query: 425 AAEIAKHAYKTGITLKEAAVKLGYLTEQ 452
AA++AK A T+++ + G + ++
Sbjct: 440 AAKVAKQALAEKKTIRQTVIDRGLIGDK 467
>pdb|3NO9|A Chain A, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|B Chain B, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|C Chain C, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|D Chain D, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
Length = 475
Score = 404 bits (1039), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/447 (48%), Positives = 287/447 (64%), Gaps = 10/447 (2%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
RIE D+ GE+ VP + AQT R++ NFPI G + I A+G+LK A AQVN
Sbjct: 12 RIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRG--LERTQIRALGLLKGACAQVNSDL 69
Query: 67 GLDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKL 126
GL + AA I+ ++D FP+ ++QTGSGT +NMN NEVI++ I GG
Sbjct: 70 GLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIAS--IAAKGGV- 126
Query: 127 GSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNII 186
+HPND VN QSSNDTFPTA HIA L+ +LQ LHDAL K+ ++ ++
Sbjct: 127 ----TLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVV 182
Query: 187 KIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGF 246
K GRTH DA P+TLGQEFSGY QI+ GIERV+ LPRL +LAIGGTAVGTGLN F
Sbjct: 183 KSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGLNAPDDF 242
Query: 247 AENCTQRISELTGLP-FKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
+ TGL ++A N FEA A+ D LVE SGAL T+AVSL KIANDIR++GSG
Sbjct: 243 GVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSG 302
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
P +GL E++LP+ +PGSSIMPGKVNP EA+T VAAQV+GN A+ GG+NG FELNV+
Sbjct: 303 PLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVY 362
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
P++ N+L S +LL + + F +C+ G+ N + + + S +VT LN IGY++A
Sbjct: 363 IPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEA 422
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQ 452
A +AK A K T+++ + G + ++
Sbjct: 423 AAVAKQALKERKTIRQTVIDRGLIGDR 449
>pdb|4ADL|A Chain A, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|B Chain B, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|C Chain C, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|D Chain D, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADM|A Chain A, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|B Chain B, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|C Chain C, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|D Chain D, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
Length = 495
Score = 404 bits (1038), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/447 (48%), Positives = 287/447 (64%), Gaps = 10/447 (2%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
RIE D+ GE+ VP + AQT R++ NFPI G + I A+G+LK A AQVN
Sbjct: 33 RIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRG--LERTQIRALGLLKGACAQVNSDL 90
Query: 67 GLDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKL 126
GL + AA I+ ++D FP+ ++QTGSGT +NMN NEVI++ I GG
Sbjct: 91 GLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIAS--IAAKGGV- 147
Query: 127 GSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNII 186
+HPND VN QSSNDTFPTA HIA L+ +LQ LHDAL K+ ++ ++
Sbjct: 148 ----TLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVV 203
Query: 187 KIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGF 246
K GRTH DA P+TLGQEFSGY QI+ GIERV+ LPRL +LAIGGTAVGTGLN F
Sbjct: 204 KSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGLNAPDDF 263
Query: 247 AENCTQRISELTGLP-FKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
+ TGL ++A N FEA A+ D LVE SGAL T+AVSL KIANDIR++GSG
Sbjct: 264 GVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSG 323
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
P +GL E++LP+ +PGSSIMPGKVNP EA+T VAAQV+GN A+ GG+NG FELNV+
Sbjct: 324 PLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVY 383
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
P++ N+L S +LL + + F +C+ G+ N + + + S +VT LN IGY++A
Sbjct: 384 IPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEA 443
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQ 452
A +AK A K T+++ + G + ++
Sbjct: 444 AAVAKQALKERKTIRQTVIDRGLIGDR 470
>pdb|4APA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
Length = 474
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/447 (48%), Positives = 287/447 (64%), Gaps = 10/447 (2%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
RIE D+ GE+ VP + AQT R++ NFPI G + I A+G+LK A AQVN
Sbjct: 11 RIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRG--LERTQIRALGLLKGACAQVNSDL 68
Query: 67 GLDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKL 126
GL + AA I+ ++D FP+ ++QTGSGT +NMN NEVI++ I GG
Sbjct: 69 GLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIAS--IAAKGGV- 125
Query: 127 GSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNII 186
+HPND VN QSSNDTFPTA HIA L+ +LQ LHDAL K+ ++ ++
Sbjct: 126 ----TLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVV 181
Query: 187 KIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGF 246
K GRTH DA P+TLGQEFSGY QI+ GIERV+ LPRL +LAIGGTAVGTGLN F
Sbjct: 182 KSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGLNAPDDF 241
Query: 247 AENCTQRISELTGLP-FKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
+ TGL ++A N FEA A+ D LVE SGAL T+AVSL KIANDIR++GSG
Sbjct: 242 GVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSG 301
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
P +GL E++LP+ +PG+SIMPGKVNP EA+T VAAQV+GN A+ GG+NG FELNV+
Sbjct: 302 PLTGLAEIQLPDLQPGASIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVY 361
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
P++ N+L S +LL + + F +C+ G+ N + + + S +VT LN IGY++A
Sbjct: 362 IPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEA 421
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQ 452
A +AK A K T+++ + G + ++
Sbjct: 422 AAVAKQALKERKTIRQTVIDRGLIGDR 448
>pdb|4APB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
Length = 474
Score = 402 bits (1034), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/447 (48%), Positives = 286/447 (63%), Gaps = 10/447 (2%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
RIE D+ GE+ VP + AQT R++ NFPI G + I A+G+LK A AQVN
Sbjct: 11 RIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRG--LERTQIRALGLLKGACAQVNSDL 68
Query: 67 GLDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKL 126
GL + AA I+ ++D FP+ ++QTGSGT +NMN NEVI++ I GG
Sbjct: 69 GLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIAS--IAAKGGV- 125
Query: 127 GSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNII 186
+HPND VN QSSNDTFPTA HIA L+ +LQ LHDAL K+ ++ ++
Sbjct: 126 ----TLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVV 181
Query: 187 KIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGF 246
K GRTH DA P+TLGQEFSGY QI+ GIERV+ LPRL +LAIGGTAVGTGLN F
Sbjct: 182 KSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGLNAPDDF 241
Query: 247 AENCTQRISELTGLP-FKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
+ TGL ++A N FEA A+ D LVE SGAL T+AVSL KIANDIR++GSG
Sbjct: 242 GVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSG 301
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
P +GL E++LP+ +PG SIMPGKVNP EA+T VAAQV+GN A+ GG+NG FELNV+
Sbjct: 302 PLTGLAEIQLPDLQPGCSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVY 361
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
P++ N+L S +LL + + F +C+ G+ N + + + S +VT LN IGY++A
Sbjct: 362 IPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEA 421
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQ 452
A +AK A K T+++ + G + ++
Sbjct: 422 AAVAKQALKERKTIRQTVIDRGLIGDR 448
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
pdb|3RRP|B Chain B, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
Length = 471
Score = 395 bits (1016), Expect = e-110, Method: Compositional matrix adjust.
Identities = 221/449 (49%), Positives = 294/449 (65%), Gaps = 12/449 (2%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
RIE D+ GE+ VP + + AQT R++ NFPI G + I A+G+LK A AQVNK
Sbjct: 12 RIEHDTMGEVRVPAEALWRAQTQRAVENFPISGRG--LERTQIRALGLLKGACAQVNKDL 69
Query: 67 GLDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKL 126
GL + AA + I+ ++D FP+ ++QTGSGT +NMN NEVI++ A +
Sbjct: 70 GLLAAEKADAIIAAAQEIADGKHDDQFPIDVFQTGSGTSSNMNANEVIASIAAQ------ 123
Query: 127 GSKDPV--HPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQN 184
+ PV HPND VN QSSNDTFPTA H+A L+ +L+ L AL K++ ++
Sbjct: 124 -ATPPVVVHPNDDVNMSQSSNDTFPTATHLAATEAAVRDLIPALEYLQQALATKAKAWKT 182
Query: 185 IIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYV 244
++K GRTH DA P+TLGQEF GY QI+ GIERVK TLPRL +L IGGTAVGTGLN
Sbjct: 183 VVKSGRTHLMDAVPVTLGQEFGGYARQIEAGIERVKATLPRLGELPIGGTAVGTGLNAPD 242
Query: 245 GFAENCTQRISELTGLP-FKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLG 303
GF + + + TGL K+A + FEA A+ D LVE SGAL T+A SL KIANDIR++G
Sbjct: 243 GFGAKVVEVLKQSTGLSELKTASDSFEAQAARDGLVEGSGALKTIAASLTKIANDIRWMG 302
Query: 304 SGPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELN 363
SGP +GLGE++LP+ +PGSSIMPGKVNP EA+T VAAQV+GN A+TVGG +G FELN
Sbjct: 303 SGPLTGLGEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAITVGGLSGAFELN 362
Query: 364 VFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYD 423
V+ P++ N+L S LLA+ + F KCV G++ NED + S +VT LN IGY+
Sbjct: 363 VYIPVMARNLLESFTLLANVSRLFVDKCVDGLVANEDHLRTLAESSPSIVTPLNSAIGYE 422
Query: 424 KAAEIAKHAYKTGITLKEAAVKLGYLTEQ 452
+AA +AK A K T+++ + G + ++
Sbjct: 423 EAAAVAKEALKERKTIRQTVIDRGLIGDK 451
>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
Length = 474
Score = 360 bits (923), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 196/465 (42%), Positives = 277/465 (59%), Gaps = 5/465 (1%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVN-KG 65
R E+DS GE ++P D Y+G QT+R++ NF + + A++ A+ ++KKAAA N K
Sbjct: 7 RREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKL 66
Query: 66 FGLDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
L I A D++I G L E F + ++Q G+GT +NMN NEVI+NRA+E LG
Sbjct: 67 RQLPEPKYAAIVAACDDIIDGLLME-QFVVDVFQGGAGTSSNMNANEVIANRALEHLGRP 125
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
G +HPND VN QS+ND +PTA+ +A+ L N++ +L L A + K +EF +
Sbjct: 126 RGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLS-QNQVQTALHRLIAAFEAKGREFATV 184
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
IKIGRT QDA P+TLGQEF + ++ R+++ ++ +GGTA+GT +N
Sbjct: 185 IKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAIGTRINASHA 244
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
+AE +S+++G+ K+ N EA A V SG L +AV L KIAND+R L SG
Sbjct: 245 YAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSG 304
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
PRSGLGE++LP +PGSSIMPGKVNP E++ V QV+GN + VT+ +G +LN F
Sbjct: 305 PRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAF 364
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
+PLIV N+L S+RLL + +CV GI N + +S+ L TAL P +GY +A
Sbjct: 365 EPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARA 424
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKM-LGPEYH 469
AEIAK A +G T+ E A+ G L + P +M PE H
Sbjct: 425 AEIAKQALASGQTVMEVAISKG-LDASALTIMLDPLRMAFPPETH 468
>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
Length = 478
Score = 360 bits (923), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 190/442 (42%), Positives = 269/442 (60%), Gaps = 3/442 (0%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVN-KG 65
R E+DS GE ++P D Y+G QT+R++ NF + + A++ A+ ++KKAAA N K
Sbjct: 24 RREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKL 83
Query: 66 FGLDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
L I A D++I G L E F + ++Q G+GT +NMN NEVI+NRA+E LG
Sbjct: 84 RQLPEPKYAAIVAACDDIIDGLLME-QFVVDVFQGGAGTSSNMNANEVIANRALEHLGRP 142
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
G +HPND VN QS+ND +PTA+ +A+ L N++ +L L A + K +EF +
Sbjct: 143 RGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLS-QNQVQTALHRLIAAFEAKGREFATV 201
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
IKIGRT QDA P+TLGQEF + ++ R+++ ++ +GGTA+GT +N
Sbjct: 202 IKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAIGTRINASHA 261
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
+AE +S+++G+ K+ N EA A V SG L +AV L KIAND+R L SG
Sbjct: 262 YAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSG 321
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
PRSGLGE++LP +PGSSIMPGKVNP E++ V QV+GN + VT+ +G +LN F
Sbjct: 322 PRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAF 381
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
+PLIV N+L S+RLL + +CV GI N + +S+ L TAL P +GY +A
Sbjct: 382 EPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARA 441
Query: 426 AEIAKHAYKTGITLKEAAVKLG 447
AEIAK A +G T+ E A+ G
Sbjct: 442 AEIAKQALASGQTVMEVAISKG 463
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|B Chain B, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|C Chain C, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|D Chain D, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|E Chain E, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|F Chain F, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|G Chain G, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|H Chain H, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
Length = 401
Score = 360 bits (923), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 184/401 (45%), Positives = 256/401 (63%), Gaps = 5/401 (1%)
Query: 6 VRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKG 65
VRIEKD GE E+P D YYG QT+R+ NFPI G R+ +I ++GI+KK+AA N
Sbjct: 5 VRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGY--RIHPELIKSLGIVKKSAALANME 62
Query: 66 FGL-DSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGG 124
GL D ++ I KAADEVI GK + D F + Q G+GT NMN NEVI+NRA+E++G
Sbjct: 63 VGLLDKEVGQYIVKAADEVIEGK-WNDQFIVDPIQGGAGTSINMNANEVIANRALELMGE 121
Query: 125 KLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQN 184
+ G+ + PN HVN QS+ND FPTA HIAV L + N+L+ + + + KK+ EF
Sbjct: 122 EKGNYSKISPNSHVNMSQSTNDAFPTATHIAV-LSLLNQLIETTKYMQQEFMKKADEFAG 180
Query: 185 IIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYV 244
+IK+GRTH QDA P+ LGQEF Y I IER+ +T LY + +G TAVGTGLN
Sbjct: 181 VIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADP 240
Query: 245 GFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGS 304
+ T+ +++ +G P +SA + +A + D EVS AL +++ KIAND+R + S
Sbjct: 241 EYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMAS 300
Query: 305 GPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNV 364
GPR+GL E+ LP +PGSSIMPGKVNP E + VA QV GN + +T G FELNV
Sbjct: 301 GPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNV 360
Query: 365 FKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKH 405
+P++ N+++SI ++ + +SFT C+ GI NE+ + ++
Sbjct: 361 MEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEY 401
>pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase
pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase
pdb|1JSW|C Chain C, Native L-Aspartate Ammonia Lyase
pdb|1JSW|D Chain D, Native L-Aspartate Ammonia Lyase
Length = 478
Score = 341 bits (875), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 184/477 (38%), Positives = 282/477 (59%), Gaps = 4/477 (0%)
Query: 4 DGVRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGES-ERMPEAIISAMGILKKAAAQV 62
+ +RIE+D G EVP D YYG T+R++ NF I +PE + M ++KKAAA
Sbjct: 3 NNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPE-FVRGMVMVKKAAAMA 61
Query: 63 NKGF-GLDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEM 121
NK + +A+ I A DEV++ D FP+ ++Q G+GT NMN NEV++N +E+
Sbjct: 62 NKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLEL 121
Query: 122 LGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQE 181
+G + G ++PNDHVNKCQS+ND +PT IAV + +L+ ++ L + ++K+ E
Sbjct: 122 MGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLI-KLVDAINQLREGFERKAVE 180
Query: 182 FQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLN 241
FQ+I+K+GRT QDA P+TLGQEF + +K ++ ++ T L ++ +G TA+GTGLN
Sbjct: 181 FQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLN 240
Query: 242 TYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRF 301
T ++ ++++E+TG P A + EA + A V V GAL +AV + KI ND+R
Sbjct: 241 TPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRL 300
Query: 302 LGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFE 361
L SGPR+GL E+ LPE + GSSIMP KVNP E + V +V+GN VT+ G +
Sbjct: 301 LSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQ 360
Query: 362 LNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIG 421
LNV +P+I + S+ +L + + KC+ GI N++ +V +S+ +VT LNP IG
Sbjct: 361 LNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIG 420
Query: 422 YDKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEYHPYFKPDNNE 478
+ + K +TG +++E ++ G LTE E D + ++ P Y D +E
Sbjct: 421 HHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPAYKAKRYTDESE 477
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|C Chain C, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|D Chain D, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|B Chain B, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
Length = 462
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 129/307 (42%), Gaps = 59/307 (19%)
Query: 189 GRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAV-GTGLNTYVGFA 247
G TH Q A P+ L F Y +K R++D RL + +G A+ GTG F
Sbjct: 156 GYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAALAGTGFPIDRHF- 214
Query: 248 ENCTQRISELTGLPFKSAP--NKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
T R L FK AP N +A+AS D +EV ALN + L ++A ++ +
Sbjct: 215 ---TAR-----ELGFK-APMRNSLDAVASRDFALEVLSALNIGMLHLSRMAEELILYST- 264
Query: 306 PRSGLGELKLPEN-EPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNV 364
G +++P+ GSSIMP K NP +E + A +V+G V
Sbjct: 265 --EEFGFVEVPDAFATGSSIMPQKKNPDILELIRAKAGRVLGAFVG-------------- 308
Query: 365 FKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHI---- 420
+S V++ + L ++ P D +A + DSL L+ AL P +
Sbjct: 309 -----LSAVVKGLPL------AYNKDLQEDKEPLLDALATY-RDSLRLLAALLPGLKWRR 356
Query: 421 ---------GYDKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPE---Y 468
GY A E+A + + G+ +EA +G L + ++ + + E +
Sbjct: 357 ERMWRAAEGGYTLATELADYLAEKGLPFREAHHVVGRLVRRLVEEGRALKDLTLEELQAH 416
Query: 469 HPYFKPD 475
HP F D
Sbjct: 417 HPLFAED 423
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 104/204 (50%), Gaps = 17/204 (8%)
Query: 155 AVALEIHNRL---LCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQ 211
A++L+I + + + L+ L D+L K++E + II +GR+H A P++ GQ+F G +
Sbjct: 101 ALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLGAYVE 160
Query: 212 IKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPFKSAPNKFEA 271
K ++ +KD + G AVG Y ++ +++ GLP + +
Sbjct: 161 FKRRLKDLKDFQKDGLTVQFSG-AVG----NYCILTTEDEKKAADILGLPVEEVSTQ--- 212
Query: 272 LASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELK--LPENEPGSSIMPGKV 329
+ D + ++ +A ++ ++A +IR L RS + E+ + + GSS MP K
Sbjct: 213 VIPRDRIAKLISIHGLIASAIERLAVEIRHL---HRSDVFEVYEGFSKGQKGSSTMPHKK 269
Query: 330 NPTQVEALTMVAAQVMGNHVAVTV 353
NP E LT + A+++ +HV++ +
Sbjct: 270 NPISTENLTGM-ARMLRSHVSIAL 292
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 16/207 (7%)
Query: 143 SSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLG 202
+S D TA+ + + ++ LL L+ D + +K++E + + +GRTH A P T G
Sbjct: 93 TSTDVVDTALSYLLK-QANDILLKDLERFVDIIKEKAKEHKYTVMMGRTHGVHAEPTTFG 151
Query: 203 QEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGT---GLNTYVGFAENCTQRISELTG 259
+ + + ++K +ER K A G VG + TY Q + E G
Sbjct: 152 LKLALWHEEMKRNLERFKQ--------AKAGIEVGKISGAVGTYANIDPFVEQYVCEKLG 203
Query: 260 LPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENE 319
L K+AP + L D + L +A S+ K A +IR L + E + +
Sbjct: 204 L--KAAPISTQTL-QRDRHADYMATLALIATSIEKFAVEIRGLQKSETREVEEF-FAKGQ 259
Query: 320 PGSSIMPGKVNPTQVEALTMVAAQVMG 346
GSS MP K NP E +T +A + G
Sbjct: 260 KGSSAMPHKRNPIGSENMTGMARVIRG 286
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|B Chain B, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|C Chain C, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|D Chain D, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
Length = 450
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 92/205 (44%), Gaps = 14/205 (6%)
Query: 147 TFPTAMHIAVALEIHNRL---LCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQ 203
T AM + L++ + L L L D L +++ + + +GRT Q ATP+TLG
Sbjct: 105 TSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRTWLQHATPVTLGM 164
Query: 204 EFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPFK 263
+ +G + + +R+++ PRL L GG A G+ L A + ++E L
Sbjct: 165 KLAGVLGALTRHRQRLQELRPRLLVLQFGG-ASGS-LAALGSKAMPVAEALAEQLKLTLP 222
Query: 264 SAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPE--NEPG 321
P + D LVE + L VA SL K DI L ++ GE+ P + G
Sbjct: 223 EQPWHTQ----RDRLVEFASVLGLVAGSLGKFGRDISLL---MQTEAGEVFEPSAPGKGG 275
Query: 322 SSIMPGKVNPTQVEALTMVAAQVMG 346
SS MP K NP L A +V G
Sbjct: 276 SSTMPHKRNPVGAAVLIGAATRVPG 300
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
pdb|1TJ7|B Chain B, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
Length = 457
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 98/231 (42%), Gaps = 34/231 (14%)
Query: 124 GKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQ 183
G+LG K ++ +S ND T + + + + LL + + L AL + +Q Q
Sbjct: 97 GQLGKK--------LHTGRSRNDQVATDLKLWCK-DTVSELLTANRQLQSALVETAQNNQ 147
Query: 184 NIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIG-GTAVGTG--- 239
+ + G TH Q A P+T YV + R++D L RL +G G GT
Sbjct: 148 DAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEI 207
Query: 240 ----LNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKI 295
L ++GFA + N ++++ D ++E+ A V L +
Sbjct: 208 DREQLAGWLGFA---------------SATRNSLDSVSDRDHVLELLSAAAIGMVHLSRF 252
Query: 296 ANDIRFLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMG 346
A D+ F +G +G EL GSS+MP K NP +E + +V G
Sbjct: 253 AEDLIFFNTG-EAGFVELS-DRVTSGSSLMPQKKNPDALELIRGKCGRVQG 301
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 14/198 (7%)
Query: 143 SSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLG 202
+S+D TA +A+ +E LL SL+ D L + + +++ IGRTH A P + G
Sbjct: 92 TSSDVLDTANSLAL-VEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFG 150
Query: 203 QEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPF 262
+ G+ +++K ++R++ + + I G AVG N E L+ L
Sbjct: 151 LKVLGWYSEMKRNVQRLERAIEEVSYGKISG-AVGNYANVPPEVEEKA------LSYLGL 203
Query: 263 KSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP--ENEP 320
K P + + +S L VA + +IA +IR L R+ + E++ P + +
Sbjct: 204 KPEPVSTQVVPRDRHAFYLS-TLAIVAAGIERIAVEIRHL---QRTEVLEVEEPFRKGQR 259
Query: 321 GSSIMPGKVNPTQVEALT 338
GSS MP K NP E LT
Sbjct: 260 GSSAMPHKKNPITCERLT 277
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 14/198 (7%)
Query: 143 SSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLG 202
+S+D TA +A+ +E LL SL+ D L + + +++ IGRTH A P + G
Sbjct: 93 TSSDVLDTANSLAL-VEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFG 151
Query: 203 QEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPF 262
+ G+ +++K ++R++ + + I G AVG N E L+ L
Sbjct: 152 LKVLGWYSEMKRNVQRLERAIEEVSYGKISG-AVGNYANVPPEVEEKA------LSYLGL 204
Query: 263 KSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP--ENEP 320
K P + + +S L VA + +IA +IR L R+ + E++ P + +
Sbjct: 205 KPEPVSTQVVPRDRHAFYLS-TLAIVAAGIERIAVEIRHL---QRTEVLEVEEPFRKGQR 260
Query: 321 GSSIMPGKVNPTQVEALT 338
GSS MP K NP E LT
Sbjct: 261 GSSAMPHKKNPITCERLT 278
>pdb|3BHG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Legionella Pneumophila
Length = 459
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 8/153 (5%)
Query: 184 NIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTL-PRLYQLAIGGTAVGTGLNT 242
++ + RTH Q ATP T G+E +V ++K +++ + L P + A+G
Sbjct: 166 DVAXLSRTHGQPATPTTXGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHVAAYP 225
Query: 243 YVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFL 302
V + ++C ++ L GL F + + E HD + EVS + L+ DI
Sbjct: 226 EVDWRKHCANFVTSL-GLSFNAYTTQIE---PHDGIAEVSQIXVRINNILLDYTQDI--- 278
Query: 303 GSGPRSGLGELKLPENEPGSSIMPGKVNPTQVE 335
S G + K E GSS P KVNP E
Sbjct: 279 WSYISLGYFKQKTIAEEVGSSTXPHKVNPIDFE 311
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate
Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus
Sp. Adp1
Length = 454
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 132/325 (40%), Gaps = 48/325 (14%)
Query: 168 LQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLY 227
+Q ++ ++Q +++ + +GRT Q A P+TLG + + + + K ++R+ R+
Sbjct: 133 VQQCYETALSQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVL 192
Query: 228 QLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNT 287
+GG AVG+ + ++ + E K D +VE++ L
Sbjct: 193 VAQLGG-AVGS-----LASLQDQGSIVVEAYAKQLKLGQTACTWHGERDRIVEIASVLGI 246
Query: 288 VAVSLMKIANDIRFLGSGPRSGLGELKLP--ENEPGSSIMPGKVNP----------TQVE 335
+ ++ K+A D + ++ + E+ P + GSS MP K NP +V
Sbjct: 247 ITGNVGKMARDWSLM---MQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANRVP 303
Query: 336 ALTMVAAQVMGNHVAVTVGGSNGH-------FELNVFKPLIVSNVLRSIRLLADTTESFT 388
AL Q M ++G + F+L +VL+ + + A+
Sbjct: 304 ALMSSIYQSMVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQ-N 362
Query: 389 TKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKAAEIAKHAYKTGIT----LKEAAV 444
+C G++ E ++ AL PH+G A + + A KT + LK+
Sbjct: 363 IECTHGLIMAE-----------AVMMALAPHMGRLNAHHVVEAACKTAVAEQKHLKDIIS 411
Query: 445 KLG----YLTEQEYDQWVKPEKMLG 465
++ Y + D+ KPE LG
Sbjct: 412 QVDEVKQYFNPSQLDEIFKPESYLG 436
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
pdb|2PFM|B Chain B, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
Length = 444
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 10/204 (4%)
Query: 143 SSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLG 202
+S D TA+ + + + +L L+ L K++E + I +GRTH A P T G
Sbjct: 104 TSTDVVDTALSY-ILKQANEIILKDLENFVSILANKAKEHKYTIMMGRTHGVHAEPTTFG 162
Query: 203 QEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPF 262
+ + ++K +ER K + + G AVG TY + + E GL
Sbjct: 163 LKLGLWYEEMKRNVERFKQAANTVRVGKLSG-AVG----TYANIDPFVEKYVCENLGL-- 215
Query: 263 KSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGS 322
++AP + L D L +A S+ K+A +IR L + E + + GS
Sbjct: 216 EAAPISTQTL-QRDRHAHYMSTLALIATSIEKMAVEIRGLQKSETREVEE-AFAKGQKGS 273
Query: 323 SIMPGKVNPTQVEALTMVAAQVMG 346
S MP K NP E +T +A + G
Sbjct: 274 SAMPHKRNPIGSENMTGLARVIRG 297
>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase
Length = 431
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 22/210 (10%)
Query: 143 SSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLG 202
+S D TA+ + + ++ + L+ D L +K++ ++ + +GRTH A P T G
Sbjct: 93 TSTDVVDTALSFVIK-QANDIIEKDLERFIDVLAEKAKNYKYTLMMGRTHGVHAEPTTFG 151
Query: 203 QEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLN------TYVGFAENCTQRISE 256
+ + + T+++ ++R K + + G AVGT N +YV C
Sbjct: 152 VKMALWYTEMQRNLQRFKQVREEIEVGKMSG-AVGTFANIPPEIESYV-----CKH---- 201
Query: 257 LTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP 316
L +AP + L D L +A SL K A +IR L + E
Sbjct: 202 ---LGIGTAPVSTQTL-QRDRHAYYIATLALIATSLEKFAVEIRNLQKTETREVEE-AFA 256
Query: 317 ENEPGSSIMPGKVNPTQVEALTMVAAQVMG 346
+ + GSS MP K NP E +T ++ + G
Sbjct: 257 KGQKGSSAMPHKRNPIGSENITGISRVIRG 286
>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp.
Bnc1
Length = 451
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 27/221 (12%)
Query: 152 MHIAVALEIHNRLLC---SLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGY 208
M A L+I + L ++ + AL ++ ++ GRTH Q A P+T G + + +
Sbjct: 108 MDTATVLQIRDGLALISRRIESVRKALAALARNHRDTPMAGRTHLQHALPVTFGYKAAVW 167
Query: 209 VTQIKYGIERVKDTLPRLYQLAIGG-----TAVGT-GLNTYVGFAENCTQRISELTGLPF 262
++ R+++ PR+ + G ++GT GL+ A + +T +
Sbjct: 168 LSAFDRHAARLEEISPRVLVVEFSGASGTLASLGTRGLDVQRELARELNLGVPSIT---W 224
Query: 263 KSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP--ENEP 320
SA DA+ E L V+ SL K+A DI + + + LGE+ P +
Sbjct: 225 HSA---------RDAVAETVQFLALVSGSLGKLAMDISIMMT---TELGEVAEPFVRHRG 272
Query: 321 GSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFE 361
SS MP K NP E L + A+++ NH + FE
Sbjct: 273 ASSTMPQKQNPVSCE-LILAGARIVRNHATSMLDAMIHDFE 312
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|B Chain B, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|C Chain C, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|D Chain D, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
Length = 403
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 145/347 (41%), Gaps = 75/347 (21%)
Query: 19 PNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFGLDSK-IADTIS 77
P D YG++ +R L EAII+A +++A + G+ + + ++
Sbjct: 5 PFDWRYGSEEIRRLFT----------NEAIINAYLEVERALVCALEELGVAERGCCEKVN 54
Query: 78 KA---ADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHP 134
KA ADEV + H LS+ + +L K G +
Sbjct: 55 KASVSADEVYRLERETGHDILSL---------------------VLLLEQKSGCR----- 88
Query: 135 NDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSL----QMLHDALDKKSQEFQNIIKIGR 190
+V+ +SND TA + + R L ++ + + D L +++++ + +GR
Sbjct: 89 --YVHYGATSNDIIDTAWALLI-----RRALAAVKEKARAVGDQLASMARKYKTLEMVGR 141
Query: 191 THTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENC 250
TH Q A P+TLG +F+ Y ++ ++ L + A G AVGT + ++
Sbjct: 142 THGQWAEPITLGFKFANYYYELYIACRQL--ALAEEFIRAKIGGAVGT-MASWGELGLEV 198
Query: 251 TQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGL 310
+R++E GLP + +A ++ ++ AL +A ++A +IR
Sbjct: 199 RRRVAERLGLPHHVITTQ---VAPRESFAVLASALALMAAVFERLAVEIR---------- 245
Query: 311 GELKLPE------NEPGSSIMPGKVNPTQVEALTMVAAQVMG-NHVA 350
EL PE GSS MP K NPT E + +A V HVA
Sbjct: 246 -ELSRPEIGEVVEGGGGSSAMPHKANPTASERIVSLARYVRALTHVA 291
>pdb|2QGA|B Chain B, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp
Bound
pdb|2QGA|C Chain C, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp
Bound
Length = 465
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 129 KDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKI 188
+D + ++V+ +S D A + +++ ++ L+ + L + E+ ++ +
Sbjct: 107 EDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAVEYSHVPLL 166
Query: 189 GRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAE 248
RTH Q A+ T G+E + + +I + + ++ R+ A AVG N + A
Sbjct: 167 SRTHGQPASSTTFGKEMANFYARIHHHVGVIR----RVKVCAKFNGAVG-NFNAH-KVAS 220
Query: 249 NCTQRISELTGLPFKSAPN-----KFEALASHDALVEVSGALNTVAVSLMKIANDIRFLG 303
T ++ + GL K N + HD + E+ L +L+ + DI
Sbjct: 221 KDTDWVNTI-GLFLKKHFNLTYSIYCTQIQDHDYICELCDGLARANGTLIDLCVDIWLYI 279
Query: 304 SGPRSGLGELKLPENEPGSSIMPGKVNPTQVE 335
S + L +LK+ E E GSS MP KVNP E
Sbjct: 280 S---NNLLKLKVKEKEVGSSTMPHKVNPIDFE 308
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 104/250 (41%), Gaps = 23/250 (9%)
Query: 104 TQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNR 163
TQ++ ++ I R E++G G + +S N+ T + + + I
Sbjct: 82 TQSDEDIQTAIERRLKELIGDIAG---------KLQTGRSRNEQVVTDLKLLLKSSISVI 132
Query: 164 LLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTL 223
LQ++ +++ + E +II G TH Q A P+ Q + + ER+ +
Sbjct: 133 STHLLQLIKTLVERAAIEI-DIIMPGYTHLQKALPIRWSQFLLSHAVALTRDSERLGEVK 191
Query: 224 PRLYQLAIG-GTAVGTGLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVS 282
R+ L +G G G L + ++T + N +A++ D +VE+
Sbjct: 192 KRITVLPLGSGVLAGNPLE----IDRELLRSELDMTSITL----NSIDAISERDFVVELI 243
Query: 283 GALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN-EPGSSIMPGKVNPTQVEALTMVA 341
+ + L K+A D+ + + G + L + GSS++P K NP +E + A
Sbjct: 244 SVATLLMIHLSKLAEDLIIFST---TEFGFVTLSDAYSTGSSLLPQKKNPDSLELIRSKA 300
Query: 342 AQVMGNHVAV 351
+V G A+
Sbjct: 301 GRVFGRLAAI 310
>pdb|4EFC|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Trypanosoma Brucei, Tb427tmp.160.5560
pdb|4EFC|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Trypanosoma Brucei, Tb427tmp.160.5560
Length = 472
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 28/214 (13%)
Query: 133 HPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTH 192
H + V+ +S D TA+ + + I L +L + +L K ++ ++ + RTH
Sbjct: 128 HVTEFVHFGLTSQDINNTAIPMMIRDAIVTLYLPALDGIIGSLTSKLVDW-DVPMLARTH 186
Query: 193 TQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLN----------- 241
Q A+P L +EF + IER+++ +L ++ G G N
Sbjct: 187 GQPASPTNLAKEFVVW-------IERLREQRRQLCEVPTTGKFGGATGNFNAHLVAYPSV 239
Query: 242 TYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRF 301
+ FA+ +++ GL + A + E ++D L + A + V L+ + D+
Sbjct: 240 NWRAFAD---MFLAKYLGLKRQQATTQIE---NYDHLAALCDACARLHVILIDMCRDVWQ 293
Query: 302 LGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVE 335
S G + K+ E E GSS MP KVNP E
Sbjct: 294 YIS---MGFFKQKVKEGEVGSSTMPHKVNPIDFE 324
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 16/187 (8%)
Query: 168 LQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLY 227
LQ++ +++ + E ++I G TH Q A P+ Q + + ER+ + R+
Sbjct: 139 LQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRIN 197
Query: 228 QLAIG-GTAVGTGLNTYVGFAENCTQRISELTGLPFKS-APNKFEALASHDALVEVSGAL 285
L +G G G L+ R + L F S + N +A++ D +VE
Sbjct: 198 VLPLGSGALAGNPLDI---------DREMLRSELEFASISLNSMDAISERDFVVEFLSFA 248
Query: 286 NTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN-EPGSSIMPGKVNPTQVEALTMVAAQV 344
+ + L K+A D+ + S G L L + GSS+MP K NP +E + A +V
Sbjct: 249 TLLMIHLSKMAEDLIIYST---SEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRV 305
Query: 345 MGNHVAV 351
G ++
Sbjct: 306 FGRLASI 312
>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|B Chain B, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|C Chain C, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|D Chain D, Crystal Structrue Of Goose Delta Crystallin
Length = 465
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 108/259 (41%), Gaps = 27/259 (10%)
Query: 98 WQTGSG--TQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIA 155
W G TQ++ +++ R E++G G +N +S N+ T + +
Sbjct: 73 WSKGVFVVTQSDEDIHTANERRLKELIGDIAG---------KLNTGRSRNEQVVTDLKLF 123
Query: 156 VALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYG 215
+ + LQ++ +++ + E ++I G TH Q A P+ Q + +
Sbjct: 124 MKNSLSVISTHLLQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTRD 182
Query: 216 IERVKDTLPRLYQLAIG-GTAVGTGLNTYVGFAENCTQRISELTGLPFKS-APNKFEALA 273
ER+ + R+ L +G G G L+ R + L F S + N +A++
Sbjct: 183 SERLGEVKRRINVLPLGSGALAGNPLDI---------DREMLRSELDFASISLNSMDAIS 233
Query: 274 SHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN-EPGSSIMPGKVNPT 332
D +VE + + L K+A D+ + S G L L + GSS+MP K NP
Sbjct: 234 ERDFVVEFLSVATLLMIHLSKMAEDLIIYST---SEFGFLTLSDAFSTGSSLMPQKKNPD 290
Query: 333 QVEALTMVAAQVMGNHVAV 351
+E + A +V G ++
Sbjct: 291 SLELIRSKAGRVFGRLASI 309
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|B Chain B, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|C Chain C, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|D Chain D, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U16|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm) In Complex With Sulfate
Length = 472
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 16/187 (8%)
Query: 168 LQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLY 227
LQ++ +++ + E ++I G TH Q A P+ Q + + ER+ + R+
Sbjct: 137 LQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRIN 195
Query: 228 QLAIG-GTAVGTGLNTYVGFAENCTQRISELTGLPFKS-APNKFEALASHDALVEVSGAL 285
L +G G G L+ R + L F S + N +A++ D +VE
Sbjct: 196 VLPLGSGALAGNPLDI---------DREMLRSELEFASISLNSMDAISERDFVVEFLSVA 246
Query: 286 NTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN-EPGSSIMPGKVNPTQVEALTMVAAQV 344
+ + L K+A D+ + S G L L + GSS+MP K NP +E + A +V
Sbjct: 247 TLLLIHLSKMAEDLIIYST---SEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRV 303
Query: 345 MGNHVAV 351
G ++
Sbjct: 304 FGRLASI 310
>pdb|2HVG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Plasmodium Vivax
pdb|2HVG|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Plasmodium Vivax
Length = 482
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 15/212 (7%)
Query: 129 KDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKI 188
+D + ++V+ +S D A + +++ ++ L+ + L + E+ ++ +
Sbjct: 124 EDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIXLKLKDLAVEYSHVPLL 183
Query: 189 GRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAE 248
RTH Q A+ T G+E + + +I + + ++ R+ A AVG N + A
Sbjct: 184 SRTHGQPASSTTFGKEXANFYARIHHHVGVIR----RVKVCAKFNGAVG-NFNAH-KVAS 237
Query: 249 NCTQRISELTGLPFKSAPN-----KFEALASHDALVEVSGALNTVAVSLMKIANDIRFLG 303
T ++ + GL K N + HD + E+ L +L+ + DI
Sbjct: 238 KDTDWVNTI-GLFLKKHFNLTYSIYCTQIQDHDYICELCDGLARANGTLIDLCVDIWLYI 296
Query: 304 SGPRSGLGELKLPENEPGSSIMPGKVNPTQVE 335
S + L +LK+ E E GSS P KVNP E
Sbjct: 297 S---NNLLKLKVKEKEVGSSTXPHKVNPIDFE 325
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 16/187 (8%)
Query: 168 LQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLY 227
LQ++ +++ + E ++I G TH Q A P+ Q + + ER+ + R+
Sbjct: 139 LQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRIN 197
Query: 228 QLAIG-GTAVGTGLNTYVGFAENCTQRISELTGLPFKS-APNKFEALASHDALVEVSGAL 285
L +G G G L+ R + L F S + N +A++ D +VE
Sbjct: 198 VLPLGSGALAGNPLDI---------DREMLRSELEFASISLNSMDAISERDFVVEFLSFA 248
Query: 286 NTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN-EPGSSIMPGKVNPTQVEALTMVAAQV 344
+ + L K+A D+ + S G L L + G+S+MP K NP +E + A +V
Sbjct: 249 TLLMIHLSKMAEDLIIYST---SEFGFLTLSDAFSTGASLMPQKKNPDSLELIRSKAGRV 305
Query: 345 MGNHVAV 351
G ++
Sbjct: 306 FGRLASI 312
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|B Chain B, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|C Chain C, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|D Chain D, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
Length = 474
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 16/187 (8%)
Query: 168 LQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLY 227
LQ++ +++ + E ++I G +H Q A P+ Q + + ER+ + R+
Sbjct: 139 LQLIKTLVERAAIEI-DVILPGYSHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRIN 197
Query: 228 QLAIG-GTAVGTGLNTYVGFAENCTQRISELTGLPFKS-APNKFEALASHDALVEVSGAL 285
L +G G G L+ R + L F S + N +A++ D +VE
Sbjct: 198 VLPLGSGALAGNPLDI---------DREMLRSELEFASISLNSMDAISERDFVVEFLSFA 248
Query: 286 NTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN-EPGSSIMPGKVNPTQVEALTMVAAQV 344
+ + L K+A D+ + S G L L + GSS+MP K NP +E + A +V
Sbjct: 249 TLLMIHLSKMAEDLIIYST---SEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRV 305
Query: 345 MGNHVAV 351
G ++
Sbjct: 306 FGRLASI 312
>pdb|3GZH|A Chain A, Crystal Structure Of Phosphate-Bound Adenylosuccinate
Lyase From E. Coli
Length = 482
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 164 LLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTL 223
+L + L D + + ++++I + RTH Q ATP T+G+E + + Y +ER L
Sbjct: 169 ILPYWRQLIDGIKDLAVQYRDIPLLSRTHGQPATPSTIGKEMAN----VAYRMERQYRQL 224
Query: 224 PRLYQLAIGGTAVGTGLNTYVGFAENCTQRISE--LTGLPFKSAPNKFEALASHDALVEV 281
++ L AVG + E + SE +T L + P + + HD + E+
Sbjct: 225 NQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQ-IEPHDYIAEL 283
Query: 282 SGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVE 335
+ L+ D+ G + + K E GSS MP KVNP E
Sbjct: 284 FDCVARFNTILIDFDRDV--WGYIALNHFKQ-KTIAGEIGSSTMPHKVNPIDFE 334
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 108/252 (42%), Gaps = 29/252 (11%)
Query: 105 QTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAV--ALEIHN 162
Q++ ++N R E++G G ++ +S ND T + + + +L I +
Sbjct: 85 QSDEDINTANERRLKELIGDIAG---------KLHTGRSRNDQVVTDLKLFMKNSLSIIS 135
Query: 163 RLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDT 222
L LQ++ +++ + E ++I G TH Q A P+ Q + + ER+ +
Sbjct: 136 THL--LQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEV 192
Query: 223 LPRLYQLAIG-GTAVGTGLNTYVGFAENCTQRISELTGLPFKS-APNKFEALASHDALVE 280
R+ L +G G G L+ R + L F S + N +A++ D +VE
Sbjct: 193 KKRINVLPLGSGALAGNPLDI---------DREMLRSELEFASISLNSMDAISERDFVVE 243
Query: 281 VSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN-EPGSSIMPGKVNPTQVEALTM 339
+ + L K+A D+ + S G L + GSS+MP K NP +E +
Sbjct: 244 FLSFATLLMIHLSKMAEDLIIYST---SEFGFLTDSDAFSTGSSLMPQKKNPDSLELIRS 300
Query: 340 VAAQVMGNHVAV 351
A +V G ++
Sbjct: 301 KAGRVFGRLASI 312
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 16/187 (8%)
Query: 168 LQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLY 227
LQ++ +++ + E ++I G TH Q A P+ Q + + ER+ + R+
Sbjct: 137 LQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRIN 195
Query: 228 QLAIG-GTAVGTGLNTYVGFAENCTQRISELTGLPFKS-APNKFEALASHDALVEVSGAL 285
L +G G G L+ R + L F S + N +A++ D +VE
Sbjct: 196 VLPLGSGALAGNPLDI---------DREMLRSELEFASISLNSMDAISERDFVVEFLSVA 246
Query: 286 NTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN-EPGSSIMPGKVNPTQVEALTMVAAQV 344
+ + L K+A D+ + S G L L + GSS+MP K NP +E + + +V
Sbjct: 247 TLLLIHLSKMAEDLIIYST---SEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKSGRV 303
Query: 345 MGNHVAV 351
G ++
Sbjct: 304 FGRLASI 310
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJW|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
Length = 474
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 16/187 (8%)
Query: 168 LQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLY 227
LQ++ +++ + E ++I G H Q A P+ Q + + ER+ + R+
Sbjct: 139 LQLIKTLVERAAIEI-DVILPGYDHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRIN 197
Query: 228 QLAIG-GTAVGTGLNTYVGFAENCTQRISELTGLPFKS-APNKFEALASHDALVEVSGAL 285
L +G G G L+ R + L F S + N +A++ D +VE
Sbjct: 198 VLPLGSGALAGNPLDI---------DREMLRSELEFASISLNSMDAISERDFVVEFLSFA 248
Query: 286 NTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN-EPGSSIMPGKVNPTQVEALTMVAAQV 344
+ + L K+A D+ + S G L L + GSS+MP K NP +E + A +V
Sbjct: 249 TLLMIHLSKMAEDLIIYST---SEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRV 305
Query: 345 MGNHVAV 351
G ++
Sbjct: 306 FGRLASI 312
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 14/174 (8%)
Query: 179 SQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGT 238
++E ++ +G TH Q A T+G+ ++ + ++ +K L + GT GT
Sbjct: 149 AKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGT-TGT 207
Query: 239 GLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDAL-----VEVSGALNTVAVSLM 293
+++ E ++ +L + + A K + + +EV L ++ S+
Sbjct: 208 Q-ASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVH 266
Query: 294 KIANDIRFLGSGPRSGLGELKLP--ENEPGSSIMPGKVNPTQVEALTMVAAQVM 345
KI DIR L + L E++ P + + GSS MP K NP + E +A +M
Sbjct: 267 KICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSECCCSLARHLM 315
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 14/174 (8%)
Query: 179 SQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGT 238
++E ++ +G TH Q A T+G+ ++ + ++ +K L + GT GT
Sbjct: 149 AKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGT-TGT 207
Query: 239 GLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDAL-----VEVSGALNTVAVSLM 293
+++ E ++ +L + + A K + + +EV L ++ S+
Sbjct: 208 Q-ASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVH 266
Query: 294 KIANDIRFLGSGPRSGLGELKLP--ENEPGSSIMPGKVNPTQVEALTMVAAQVM 345
KI DIR L + L E++ P + + GSS MP K NP + E +A +M
Sbjct: 267 KICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLM 315
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 447
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 111/261 (42%), Gaps = 31/261 (11%)
Query: 98 WQTGSGT--QTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIA 155
W G Q++ +++ R E++G G +N +S ND T + +
Sbjct: 58 WSKGVFVVKQSDEDIHTANERRLKELIGDIAG---------KLNTGRSRNDQVVTDLKLF 108
Query: 156 V--ALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIK 213
+ +L I + L LQ++ +++ + E ++I G T+ Q A P+ Q + +
Sbjct: 109 MKNSLSIISTHL--LQLIKTLVERAAIEI-DVILPGYTNLQKAQPIRWSQFLLSHAVALT 165
Query: 214 YGIERVKDTLPRLYQLAIG-GTAVGTGLNTYVGFAENCTQRISELTGLPFKS-APNKFEA 271
ER+ + R+ L +G G G L+ R + L F S + N +A
Sbjct: 166 RDSERLGEVKKRINVLPLGSGALAGNPLDI---------DREMLRSELEFASISLNSMDA 216
Query: 272 LASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN-EPGSSIMPGKVN 330
++ D +VE + + L K+A D+ + S G L L + GSS+MP K N
Sbjct: 217 ISERDFVVEFLSFATLLMIHLSKMAEDLIIYST---SEFGFLTLSDAFSTGSSLMPQKKN 273
Query: 331 PTQVEALTMVAAQVMGNHVAV 351
P +E + + +V G ++
Sbjct: 274 PDSLELIRSKSGRVFGRLASI 294
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|B Chain B, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|C Chain C, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|D Chain D, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
Length = 503
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 14/174 (8%)
Query: 179 SQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGT 238
++E ++ +G TH Q A T+G+ ++ + ++ +K L + GT GT
Sbjct: 168 AKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGT-TGT 226
Query: 239 GLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDAL-----VEVSGALNTVAVSLM 293
+++ E ++ +L + + A K + + +EV L ++ S+
Sbjct: 227 Q-ASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVH 285
Query: 294 KIANDIRFLGSGPRSGLGELKLP--ENEPGSSIMPGKVNPTQVEALTMVAAQVM 345
KI DIR L + L E++ P + + GSS MP K NP + E +A +M
Sbjct: 286 KICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLM 334
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|B Chain B, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|C Chain C, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|D Chain D, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate
Length = 503
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 14/174 (8%)
Query: 179 SQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGT 238
++E ++ +G TH Q A T+G+ ++ + ++ +K L + GT GT
Sbjct: 168 AKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGT-TGT 226
Query: 239 GLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDAL-----VEVSGALNTVAVSLM 293
+++ E ++ +L + + A K + + +EV L ++ S+
Sbjct: 227 Q-ASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVH 285
Query: 294 KIANDIRFLGSGPRSGLGELKLP--ENEPGSSIMPGKVNPTQVEALTMVAAQVM 345
KI DIR L + L E++ P + + GSS MP K NP + E +A +M
Sbjct: 286 KICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLM 334
>pdb|2PTQ|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
pdb|2PTQ|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
Length = 462
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 164 LLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTL 223
+L + L D L + ++++I + RT+ Q ATP T+G+E + + Y +ER L
Sbjct: 143 ILPYWRQLIDGLKDLAVQYRDIPLLSRTNGQPATPSTIGKEMAN----VAYRMERQYRQL 198
Query: 224 PRLYQLAIGGTAVGTGLNTYVGFAENCTQRISE--LTGLPFKSAPNKFEALASHDALVEV 281
++ L AVG + E + SE +T L + P + + HD + E+
Sbjct: 199 NQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQ-IEPHDYIAEL 257
Query: 282 SGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVE 335
+ L+ D+ G + + K E GSS MP KVNP E
Sbjct: 258 FDCVARFNTILIDFDRDV--WGYIALNHFKQ-KTIAGEIGSSTMPHKVNPIDFE 308
>pdb|2PTR|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
pdb|2PTR|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
Length = 462
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 10/174 (5%)
Query: 164 LLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTL 223
+L + L D L + ++++I + RT Q ATP T+G+E + + Y +ER L
Sbjct: 143 ILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPATPSTIGKEMAN----VAYRMERQYRQL 198
Query: 224 PRLYQLAIGGTAVGTGLNTYVGFAENCTQRISE--LTGLPFKSAPNKFEALASHDALVEV 281
++ L AVG + E + SE +T L + P + + HD + E+
Sbjct: 199 NQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQ-IEPHDYIAEL 257
Query: 282 SGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVE 335
+ L+ D+ G + + K E GSS MP KVNP E
Sbjct: 258 FDCVARFNTILIDFDRDV--WGYIALNHFKQ-KTIAGEIGSSTMPHKVNPIDFE 308
>pdb|2PTS|A Chain A, Crystal Structure Of Wild Type Escherichia Coli
Adenylosuccinate Lyase
Length = 462
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 10/174 (5%)
Query: 164 LLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTL 223
+L + L D L + ++++I + RTH Q ATP T+G+E + + Y ER L
Sbjct: 143 ILPYWRQLIDGLKDLAVQYRDIPLLSRTHGQPATPSTIGKEXAN----VAYRXERQYRQL 198
Query: 224 PRLYQLAIGGTAVGTGLNTYVGFAENCTQRISE--LTGLPFKSAPNKFEALASHDALVEV 281
++ L AVG + E + SE +T L + P + + HD + E+
Sbjct: 199 NQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQ-IEPHDYIAEL 257
Query: 282 SGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVE 335
+ L+ D+ G + + K E GSS P KVNP E
Sbjct: 258 FDCVARFNTILIDFDRDV--WGYIALNHFKQ-KTIAGEIGSSTXPHKVNPIDFE 308
>pdb|1YIS|A Chain A, Structural Genomics Of Caenorhabditis Elegans:
Adenylosuccinate Lyase
Length = 478
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 15/184 (8%)
Query: 183 QNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNT 242
+ ++ +GRTH Q A+ +T+G+ + ++ + + + + I G A GT +
Sbjct: 146 KEVVTVGRTHYQTASLVTVGKRGVLWAQELLXAFQSLSEFRDKXRFRGIKG-ATGTQDSF 204
Query: 243 YVGFAENCTQRISELTGLPFKSA--PNKFEALA---SHDALVEVSGALNTVAVSLMKIAN 297
FA + ++ L L K A N+F S ++ +L+ + + K+
Sbjct: 205 LTLFAGD-ESKVEALDELVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCT 263
Query: 298 DIRFLGSGPRSGLGELKLP--ENEPGSSIMPGKVNPTQVEALTMVAAQVMGN-HVAVTVG 354
DIR L GEL P +++ GSS P K NP + E ++ +++ A+T+
Sbjct: 264 DIRVL-----QAFGELLEPFEKDQIGSSAXPYKKNPXKSERCCALSRKLINAPQEALTIL 318
Query: 355 GSNG 358
G
Sbjct: 319 ADQG 322
>pdb|2FEL|A Chain A, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|B Chain B, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|D Chain D, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|C Chain C, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|E Chain E, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|F Chain F, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|G Chain G, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|H Chain H, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|I Chain I, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|J Chain J, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|L Chain L, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|K Chain K, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|A Chain A, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|B Chain B, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|D Chain D, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|C Chain C, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|E Chain E, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|F Chain F, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|H Chain H, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|G Chain G, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|I Chain I, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|J Chain J, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|L Chain L, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|K Chain K, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
Length = 359
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 82/210 (39%), Gaps = 21/210 (10%)
Query: 136 DHVNKCQSSNDTFPTAM--HIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHT 193
D V+ +S D T++ + +A EI + L L D L + + G T
Sbjct: 100 DKVHFGATSQDVIDTSLMLRLKMAAEI---IATRLGHLIDTLGDLASRDGHKPLTGYTRM 156
Query: 194 QDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQR 253
Q A +T+ +G++ ++ + R++ + L GG A T +N
Sbjct: 157 QAAIGITVADRAAGWIAPLERHLLRLETFAQNGFALQFGGAA-----GTLEKLGDNAGAV 211
Query: 254 ISELTG-LPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLG- 311
++L L P D + E + L+ V +L K DI + +G
Sbjct: 212 RADLAKRLGLADRPQWHN---QRDGIAEFANLLSLVTGTLGKFGQDIALMAE-----IGS 263
Query: 312 ELKLPENEPGSSIMPGKVNPTQVEALTMVA 341
E++L GSS MP K NP E L +A
Sbjct: 264 EIRLSGG-GGSSAMPHKQNPVNAETLVTLA 292
>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase
From Escherichia Coli
pdb|4A2C|B Chain B, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase
From Escherichia Coli
Length = 346
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 198 PLTLGQEFSGYVTQIKYGIE 217
P+TLG EFSGY+ + G++
Sbjct: 54 PITLGHEFSGYIDAVGSGVD 73
>pdb|1I9R|H Chain H, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
pdb|1I9R|K Chain K, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
pdb|1I9R|X Chain X, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
Length = 219
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 12/137 (8%)
Query: 434 KTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEYHPYFKPDNNETIFHTEKVISQQILA 493
K G ++K + GY+ Y WVK G E+ P N +T F+ EK S+ L
Sbjct: 13 KPGASVKLSCKASGYIFTSYYMYWVKQAPGQGLEWIGEINPSNGDTNFN-EKFKSKATLT 71
Query: 494 AKVLPPWSRPSCPQARSIIRGRPSTLRYSARTQFVRSSQPARPKRDLDAKMTTVPPSYFT 553
S + S +R + + Y R+ R D + T V S +
Sbjct: 72 VDK----SASTAYMELSSLRSEDTAVYYCTRSD-------GRNDMDSWGQGTLVTVSSAS 120
Query: 554 SEFPSEAPLANLSHGNS 570
++ PS PLA S S
Sbjct: 121 TKGPSVFPLAPSSKSTS 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,396,457
Number of Sequences: 62578
Number of extensions: 735502
Number of successful extensions: 2227
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2077
Number of HSP's gapped (non-prelim): 69
length of query: 638
length of database: 14,973,337
effective HSP length: 105
effective length of query: 533
effective length of database: 8,402,647
effective search space: 4478610851
effective search space used: 4478610851
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)