Query psy13008
Match_columns 638
No_of_seqs 256 out of 1649
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 17:00:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gtd_A Fumarase C, fumarate hy 100.0 3E-109 1E-113 911.9 43.9 461 2-465 21-482 (482)
2 3e04_A Fumarase, fumarate hydr 100.0 1E-108 3E-113 908.5 42.4 461 5-466 29-489 (490)
3 3r6q_A Aspartase; aspartate am 100.0 3E-106 9E-111 890.1 43.7 460 4-467 3-463 (468)
4 3ocf_A Fumarate lyase:delta cr 100.0 1E-105 5E-110 884.4 42.5 455 6-463 23-478 (478)
5 4hgv_A Fumarase C, fumarate hy 100.0 4E-105 1E-109 885.4 44.7 463 2-467 32-495 (495)
6 1fur_A Fumarase C, FUMC; hydro 100.0 3E-103 9E-108 867.5 47.1 462 3-467 1-463 (467)
7 4adm_A Fumarase C, fumarate hy 100.0 1E-103 5E-108 871.7 43.4 454 4-467 30-489 (495)
8 1yfm_A Fumarase, YFUM; lyase, 100.0 4E-103 1E-107 868.3 44.7 458 6-466 28-487 (488)
9 1jsw_A L-aspartase, L-aspartat 100.0 2E-102 7E-107 863.1 43.9 458 6-467 5-466 (478)
10 1vdk_A Fumarase C, fumarate hy 100.0 3E-102 1E-106 859.4 40.7 459 6-467 3-463 (466)
11 1q5n_A 3-carboxy-CIS,CIS-mucon 100.0 5.3E-80 1.8E-84 680.6 32.9 415 19-469 7-440 (454)
12 1re5_A 3-carboxy-CIS,CIS-mucon 100.0 4.1E-80 1.4E-84 680.8 31.2 414 18-470 4-437 (450)
13 2e9f_A Argininosuccinate lyase 100.0 8.7E-81 3E-85 687.6 23.9 436 21-511 3-458 (462)
14 3c8t_A Fumarate lyase; structu 100.0 1.3E-79 4.4E-84 676.9 32.7 410 18-469 6-434 (451)
15 1k7w_A Delta 2 crystallin; eye 100.0 1.7E-80 6E-85 686.2 24.3 435 22-512 13-461 (468)
16 1c3c_A Protein (adenylosuccina 100.0 1.5E-78 5.2E-83 664.7 35.6 397 23-470 3-423 (429)
17 2pfm_A Adenylosuccinate lyase; 100.0 2E-78 6.9E-83 666.0 34.7 403 22-470 12-435 (444)
18 1tj7_A Argininosuccinate lyase 100.0 3.8E-79 1.3E-83 673.8 28.6 436 22-511 6-455 (457)
19 1dof_A Adenylosuccinate lyase; 100.0 9.3E-75 3.2E-79 629.8 35.4 377 18-445 4-396 (403)
20 4eei_A Adenylosuccinate lyase; 100.0 9.2E-74 3.2E-78 627.3 32.6 377 22-444 3-393 (438)
21 2ptr_A Adenylosuccinate lyase; 100.0 6.9E-75 2.4E-79 640.8 22.4 416 17-469 9-450 (462)
22 1yis_A Adenylosuccinate lyase; 100.0 6.4E-74 2.2E-78 635.7 26.2 416 15-470 6-450 (478)
23 2j91_A Adenylosuccinate lyase; 100.0 2E-73 6.9E-78 634.3 27.3 420 11-470 30-478 (503)
24 2fel_A 3-carboxy-CIS,CIS-mucon 100.0 1.7E-69 5.9E-74 580.0 26.2 349 15-405 5-355 (359)
25 3bhg_A Adenylosuccinate lyase; 100.0 3.9E-69 1.3E-73 594.5 27.5 415 17-470 12-454 (459)
26 2qga_B Adenylosuccinate lyase; 100.0 9.8E-70 3.4E-74 600.2 22.6 421 17-470 8-453 (465)
27 2jwa_A Receptor tyrosine-prote 29.7 28 0.00096 25.7 2.2 23 587-609 21-43 (44)
28 2knc_B Integrin beta-3; transm 22.8 1.2E+02 0.0042 24.9 5.1 25 586-610 17-41 (79)
29 3fxd_A Protein ICMQ; helix bun 22.6 53 0.0018 25.4 2.6 21 68-88 5-26 (57)
No 1
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}
Probab=100.00 E-value=3e-109 Score=911.94 Aligned_cols=461 Identities=64% Similarity=0.978 Sum_probs=442.9
Q ss_pred CCCCcccccccCCccccCCCCCCchHhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Q psy13008 2 GKDGVRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAA 80 (638)
Q Consensus 2 ~~~~~r~e~d~~g~~~~P~~~~yg~~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al 80 (638)
.|+++|+|+|++|+++||.|+|||.+|+|+++||++|+.. .|+++|++++.||+|+|++|.++| ||++.+++|.++|
T Consensus 21 ~~~~~r~e~d~~g~~~vp~~~~~g~qt~Ra~~nf~i~~~~--~~~~~i~a~~~vk~AaA~an~~~G~l~~~~a~aI~~a~ 98 (482)
T 3gtd_A 21 SMKNYRIESDSFGEIQIEEKFYWGAQTQRSLNNFKISKQK--MPKILIRALAILKKCAAQVNYEFGDLEYKIATSIDKAI 98 (482)
T ss_dssp ---CEEEEEETTEEEEEETTCCCCHHHHHHHHHCCCCSCB--CCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ccccCcCccccCCCccCCcccccCHHHHHHHHhccccCCC--CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3677999999999999999999999999999999999984 789999999999999999999999 9999999999999
Q ss_pred HHHHcCccccCCccccccccCCcccccchhhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHH
Q psy13008 81 DEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEI 160 (638)
Q Consensus 81 ~~i~~~~~~~~~f~~~~~~~~~~edi~~~vnevie~~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l 160 (638)
++|.+|++ +++||++++|+|+|+++|||+||||+++++|++|.+.|+|.++|||+|||+||||||+++|+++|++++++
T Consensus 99 ~ev~~g~~-~~~fp~~~~q~gsGt~~Nmn~NevIa~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~ 177 (482)
T 3gtd_A 99 DRILAGEF-EDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLAT 177 (482)
T ss_dssp HHHHHTTT-TTSCCCBSSSCTTCHHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCCCCCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCc-ccCCCeehhccCCCccccchHHHHHHHHHHHHhCcccCCcCcCCccccCCCCCChhhHHHHHHHHHHHHHH
Confidence 99999888 88999999999999999999999999999999998899998999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCC
Q psy13008 161 HNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGL 240 (638)
Q Consensus 161 ~~~L~~~L~~L~~aL~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~ 240 (638)
.+.|.+.|..|+++|.++|++|+|++||||||+|+||||||||+|++|+++|.||++||.+++++++.+||||||+||++
T Consensus 178 ~~~L~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~P~TlG~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~ 257 (482)
T 3gtd_A 178 KQQLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAVGTGI 257 (482)
T ss_dssp HHTHHHHHHHHHHHHHHHHTTGGGCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTTTEECTTCTTTSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcEeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCC
Confidence 65699999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred CCCchhhHHHHHHHHHHcCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCCCCC
Q psy13008 241 NTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEP 320 (638)
Q Consensus 241 ~~d~~~~~~v~~~lA~~LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~~~~ 320 (638)
+++++|++++.++++++|||+.++.+|++|++++||+++|++++++.++++|+|||+||++|+||||+|||||.+|++++
T Consensus 258 ~~~~~~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp~~~~ 337 (482)
T 3gtd_A 258 NSKIGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSGPRCGLGELHLPENEP 337 (482)
T ss_dssp TSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSC
T ss_pred cCCchhHHHHHHHHHHHhCCCCccccchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCeeEEECCCCCC
Confidence 99999999999999999999986789999999999999999999999999999999999999999999999999999899
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChH
Q psy13008 321 GSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNED 400 (638)
Q Consensus 321 GSSiMPqKrNP~~lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~e 400 (638)
|||||||||||+.+|.++++|++|+|++.++++++..+++|+|.++|++.++++++++++.++++.++.+|++||+||++
T Consensus 338 GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~pl~~~~~l~s~~ll~~~~~~~~~~~v~gl~vn~e 417 (482)
T 3gtd_A 338 GSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIA 417 (482)
T ss_dssp CCSSSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEECHH
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 99999999999999999999999999999999888899999999999989999999999999999999999999999999
Q ss_pred HHHHhhhhhhhHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhhcCcccccC
Q psy13008 401 TIAKHVNDSLMLVTALNPHIGYDKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLG 465 (638)
Q Consensus 401 rm~~~l~~~~~lat~La~~ig~~~Ah~iv~~A~~~g~~l~eal~~~~~Ls~eel~~llDP~~~vg 465 (638)
||+++++++++++|+|++++||+.|++++++|.++|++++|++.+.+.||++|++++|||.+|+|
T Consensus 418 rm~~~l~~s~~lvTaLa~~iGy~~a~~ia~~A~~~g~~l~e~~~~~~~ls~eeld~~ldP~~~~g 482 (482)
T 3gtd_A 418 RINTLRDKSLMLVTVLNPHIGYDNAAKIAKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPEKMIS 482 (482)
T ss_dssp HHHHHHHHCGGGHHHHHHHHCHHHHHHHHHHHHHHTCCHHHHHHHTTSCCHHHHHHHHSCC----
T ss_pred HHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHcCHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999987
No 2
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-108 Score=908.53 Aligned_cols=461 Identities=75% Similarity=1.152 Sum_probs=443.1
Q ss_pred CcccccccCCccccCCCCCCchHhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q psy13008 5 GVRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFGLDSKIADTISKAADEVI 84 (638)
Q Consensus 5 ~~r~e~d~~g~~~~P~~~~yg~~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~GI~~e~a~~I~~al~~i~ 84 (638)
++|+|+|++|+++||.|+|||.+|+|++.||++|+...+.++.+|+++..|++|+|++|.++|||++.+++|.++|++|.
T Consensus 29 ~~r~e~D~~G~~~vp~~~~~g~qt~ra~~nf~i~~~~~~~~~~~i~a~~~vkkAaA~an~~~Gl~~~~a~aI~~a~~ev~ 108 (490)
T 3e04_A 29 SFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDYGLDPKIANAIMKAADEVA 108 (490)
T ss_dssp CEEEEEETTEEEEEETTCCCCHHHHHHHHHCCCSCGGGBCCHHHHHHHHHHHHHHHHHGGGGTCCHHHHHHHHHHHHHHH
T ss_pred CCCcccccCcCccCcchhhhhHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999755678999999999999999999999999999999999999999
Q ss_pred cCccccCCccccccccCCcccccchhhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q psy13008 85 SGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRL 164 (638)
Q Consensus 85 ~~~~~~~~f~~~~~~~~~~edi~~~vnevie~~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~L 164 (638)
+|++ +++||++++|+|+|+++|||+||||+++++|++|.+.|+|+++|||+|||+||||||+++|+++|++++++.+.|
T Consensus 109 ~g~~-~~~Fp~~~~q~Gsgt~~nmn~NEvia~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~L 187 (490)
T 3e04_A 109 EGKL-NDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVL 187 (490)
T ss_dssp TTSC-GGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTSCCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTH
T ss_pred cCCc-ccCCceeeecCCCCCcccccHHHHHHHHHHHHhCcccCCCCCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 9887 889999999999999999999999999999999988999989999999999999999999999999998876569
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCCCCCc
Q psy13008 165 LCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYV 244 (638)
Q Consensus 165 ~~~L~~L~~aL~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~~~d~ 244 (638)
.+.|.+|+++|.++|++|+|++||||||+|+||||||||||++|+++|.||++||.+++++++.+||||||+||++++++
T Consensus 188 ~~~L~~L~~aL~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~~~~lGgtAvGTg~~~~~ 267 (490)
T 3e04_A 188 LPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAVGTGLNTRI 267 (490)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTCTTTSEECTTCTTTSSCTTSCT
T ss_pred HHHHHHHHHHHHHHHHHhhCceeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCcCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred hhhHHHHHHHHHHcCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCCCCCCCCC
Q psy13008 245 GFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSSI 324 (638)
Q Consensus 245 ~~~~~v~~~lA~~LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~~~~GSSi 324 (638)
+|+.++.+++++.|||+..+.+|++|++++||+++|++++++.++++|+|||+||++|+||||+|||||.+|+.++||||
T Consensus 268 ~~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~ve~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp~~~~GSSi 347 (490)
T 3e04_A 268 GFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILPENEPGSSI 347 (490)
T ss_dssp THHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCC---
T ss_pred hHHHHHHHHHHHHhCCCCcCCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEECCCCCCCCCC
Confidence 99999999999999999767899999999999999999999999999999999999999999999999999998999999
Q ss_pred CCCCCChhHHHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHHHHH
Q psy13008 325 MPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAK 404 (638)
Q Consensus 325 MPqKrNP~~lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~erm~~ 404 (638)
||||+||+.+|.++++|++|+|+..++.+++..+++|+++++|++.++++++++++.++++.++.+|++||+||++||++
T Consensus 348 MP~K~NPv~~E~i~~~a~~v~G~~~ai~~a~~~g~~eln~~~p~~~~~ll~s~~ll~~~~~~~~~~~v~gl~vn~erm~~ 427 (490)
T 3e04_A 348 MPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINK 427 (490)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHH
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhhcCcccccCC
Q psy13008 405 HVNDSLMLVTALNPHIGYDKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGP 466 (638)
Q Consensus 405 ~l~~~~~lat~La~~ig~~~Ah~iv~~A~~~g~~l~eal~~~~~Ls~eel~~llDP~~~vg~ 466 (638)
+++++++++|+|++++||+.|++++++|.++|++++|++.+.+.||++|++++|||..|+|+
T Consensus 428 ~l~~s~~lvTaLa~~iGy~~a~~iak~A~~~g~~l~e~~~~~~~ls~eeld~~ldP~~~~g~ 489 (490)
T 3e04_A 428 LMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 489 (490)
T ss_dssp HHHHCSGGGGGGHHHHCHHHHHHHHHHHHHHTCCHHHHHHHHTSCCHHHHHHHCCGGGSSCC
T ss_pred HHhhchHHHHHhhhHHHHHHHHHHHHHHHHHCCCHHHHHHHcCCCCHHHHHHHcCHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 3
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=100.00 E-value=2.6e-106 Score=890.13 Aligned_cols=460 Identities=45% Similarity=0.758 Sum_probs=439.9
Q ss_pred CCcccccccCCccccCCCCCCchHhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
Q psy13008 4 DGVRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAADE 82 (638)
Q Consensus 4 ~~~r~e~d~~g~~~~P~~~~yg~~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al~~ 82 (638)
+++|+|+|++|+++||.|+|||.+|+|++.||++|+. +.+++++++|+.||+|+|++|.++| ||++++++|.++|++
T Consensus 3 ~~~r~e~d~~g~~~vp~~~~yg~qt~ra~~nf~i~~~--~~~~~~i~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~a~~~ 80 (468)
T 3r6q_A 3 TDVRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGY--RIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADE 80 (468)
T ss_dssp --CEEEEETTEEEEECTTCCCCHHHHHHHHHCCSSCC--CCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCccccCCCccCCcccccCHHHHHHHHccccCCC--CCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3489999999999999999999999999999999987 4789999999999999999999999 999999999999999
Q ss_pred HHcCccccCCccccccccCCcccccchhhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q psy13008 83 VISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHN 162 (638)
Q Consensus 83 i~~~~~~~~~f~~~~~~~~~~edi~~~vnevie~~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~ 162 (638)
|.++.+ +++|+++++++++++++|||+|+||++++.|++|++.|+|.++|||+|||+||||||+++|+++|++|+.+.
T Consensus 81 i~~~~~-~~~f~~~~~~~g~gt~~nmnvnevia~~~~e~~G~~~g~y~~vHpndhVn~g~SsnDv~~Ta~~L~~r~~l~- 158 (468)
T 3r6q_A 81 VIEGKW-NDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLN- 158 (468)
T ss_dssp HHTTTT-GGGCCSCSSCSSTTHHHHHHHHHHHHHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHhCcc-ccCCCccHHhccccccccccHHHHHHHHHHHHhccccCCcCccCCccCCCCCCChHhHHHHHHHHHHHHHHH-
Confidence 998776 889999999999999999999999999999999987787656899999999999999999999999999876
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCCCC
Q psy13008 163 RLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNT 242 (638)
Q Consensus 163 ~L~~~L~~L~~aL~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~~~ 242 (638)
.|.+.|.+|+++|.++|++|+|++||||||+||||||||||||++|+++|.||++||.+++++++.+||||||+||++++
T Consensus 159 ~l~~~L~~L~~~L~~~A~~~~~~v~~GrTHlQ~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~~ 238 (468)
T 3r6q_A 159 QLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNA 238 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTTSSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHccCcEEecCcCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeecCCCCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred CchhhHHHHHHHHHHcCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCCCCCCC
Q psy13008 243 YVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGS 322 (638)
Q Consensus 243 d~~~~~~v~~~lA~~LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~~~~GS 322 (638)
++++...+.++++++|||+.++.+|++||+++||++++++++++.++++|+|||+||++|+|+||+|||||.+|+.++||
T Consensus 239 ~~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~Kia~DlrllsS~pr~g~gei~lp~~~~GS 318 (468)
T 3r6q_A 239 DPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGS 318 (468)
T ss_dssp CHHHHHHHHHHHHHHHCSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSCCCEECCCCSCCC
T ss_pred ChHHHHHHHHHHHHHhCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeEEECCCCCCCC
Confidence 99999999999999999997678999999999999999999999999999999999999999999999999999889999
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHHH
Q psy13008 323 SIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTI 402 (638)
Q Consensus 323 SiMPqKrNP~~lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~erm 402 (638)
|||||||||+.+|.++++|++|+|++.++++....++++++.++|.+.+++++++.++.+++..+.++|++||+||++||
T Consensus 319 SiMP~K~NP~~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~p~i~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~erm 398 (468)
T 3r6q_A 319 SIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERM 398 (468)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHH
Confidence 99999999999999999999999999999877777889999888888888999999999888877779999999999999
Q ss_pred HHhhhhhhhHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhhcCcccccCCC
Q psy13008 403 AKHVNDSLMLVTALNPHIGYDKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPE 467 (638)
Q Consensus 403 ~~~l~~~~~lat~La~~ig~~~Ah~iv~~A~~~g~~l~eal~~~~~Ls~eel~~llDP~~~vg~a 467 (638)
+++++.+++++|+|++++||+.|++++++|.++|++|+|++.+.+.|+++|++++|||.+|+++.
T Consensus 399 ~~~l~~s~~l~t~La~~lgy~~a~~ia~~a~~~g~~l~e~~~~~~~ls~eel~~~ldp~~~~~~~ 463 (468)
T 3r6q_A 399 KEYVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHPG 463 (468)
T ss_dssp HHHHHTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHTSSCHHHHHHHSCHHHHTSCC
T ss_pred HHHHHcCCchHHhcchhhHHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHcCHHHhcCCC
Confidence 99999999999999999999999999999999999999999998999999999999999999984
No 4
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=100.00 E-value=1.4e-105 Score=884.40 Aligned_cols=455 Identities=42% Similarity=0.678 Sum_probs=426.4
Q ss_pred cccccccCCccccCCCCCCchHhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
Q psy13008 6 VRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAADEVI 84 (638)
Q Consensus 6 ~r~e~d~~g~~~~P~~~~yg~~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al~~i~ 84 (638)
+|+|+|++|+++||.|+|||.+|+|++.||++|+.....++++|++|+.||+|+|++|.++| ||++++++|.++|++|.
T Consensus 23 ~r~e~d~~g~~~vp~~~~yG~qt~Ra~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~~~G~l~~~~a~aI~~a~~ei~ 102 (478)
T 3ocf_A 23 TRREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLPEPKYAAIVAACDDII 102 (478)
T ss_dssp CEEEEETTEEEEECTTCSSCHHHHHHHHHCCCSSCBGGGSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred cccccccCCCccCCcccccCHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999987533347999999999999999999999 99999999999999999
Q ss_pred cCccccCCccccccccCCcccccchhhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q psy13008 85 SGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRL 164 (638)
Q Consensus 85 ~~~~~~~~f~~~~~~~~~~edi~~~vnevie~~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~L 164 (638)
+|++ +++|+++.++++.++++|||+||||++++.|++|++.|+|.++|||+|||+||||||+++|+++|++|+.+. .|
T Consensus 103 ~g~~-~~~f~~~~~q~g~gt~~nmnvnevia~~a~e~~G~~~G~~~~vHpndhVn~g~SsNDv~~Ta~~L~~~~~l~-~L 180 (478)
T 3ocf_A 103 DGLL-MEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQN-QV 180 (478)
T ss_dssp TTTT-GGGCCCBTTCSSTTHHHHHHHHHHHHHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHTHH-HH
T ss_pred cCcc-ccCCCcchhhccCCccccchHHHHHHHHHHHHhchhcCCCCccCCCCCCCCCCChhhHHHHHHHHHHHHHHH-HH
Confidence 8877 789999999999999999999999999999999988888766899999999999999999999999999875 59
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCCCCCc
Q psy13008 165 LCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYV 244 (638)
Q Consensus 165 ~~~L~~L~~aL~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~~~d~ 244 (638)
.+.|..|+++|.++|++|+|++||||||+|+||||||||||++|+++|.||++||.+++++++.+||||||+||++++++
T Consensus 181 ~~~L~~L~~~L~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~~~~lGgtAvGTg~~~~~ 260 (478)
T 3ocf_A 181 QTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAIGTRINASH 260 (478)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHGGGEECTTC-----------
T ss_pred HHHHHHHHHHHHHHHHHccCcEeecccccccceeecHHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCeeeCCCcCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred hhhHHHHHHHHHHcCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCCCCCCCCC
Q psy13008 245 GFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSSI 324 (638)
Q Consensus 245 ~~~~~v~~~lA~~LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~~~~GSSi 324 (638)
+|+..+.++++++|||+..+.+|++|++++||++++++++|+.++++|+|||+||++|+||||+|||||.+|+.++||||
T Consensus 261 ~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp~~q~GSSi 340 (478)
T 3ocf_A 261 AYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLPAVQPGSSI 340 (478)
T ss_dssp CHHHHHHHHHHHHHTSCCEECSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCCEECCCCSCCBTT
T ss_pred hHHHHHHHHHHHhcCCCCccCCChhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeEEECCCCCCcCCC
Confidence 99999999999999999767899999999999999999999999999999999999999999999999999988999999
Q ss_pred CCCCCChhHHHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHHHHH
Q psy13008 325 MPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAK 404 (638)
Q Consensus 325 MPqKrNP~~lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~erm~~ 404 (638)
|||||||+.+|.++++|++|+|+..++++.+.+++++++.++|.+.++++++++++.+++..++..|++||+||++||++
T Consensus 341 MP~K~NPv~~E~i~~~a~~V~G~~~~i~~a~~~g~leln~~~p~i~~~l~~s~~ll~~~~~~~~~~~v~gl~vn~erm~~ 420 (478)
T 3ocf_A 341 MPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRA 420 (478)
T ss_dssp BTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHH
T ss_pred CCcccCcHHHHHHHHHHHHHHhHHHHHHHHHhcCcchhcccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCEECHHHHHH
Confidence 99999999999999999999999999988888899999999998889999999999999999988999999999999999
Q ss_pred hhhhhhhHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhhcCcccc
Q psy13008 405 HVNDSLMLVTALNPHIGYDKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKM 463 (638)
Q Consensus 405 ~l~~~~~lat~La~~ig~~~Ah~iv~~A~~~g~~l~eal~~~~~Ls~eel~~llDP~~~ 463 (638)
+++.+++++|+|++++||+.|++++++|.++|++|+|++.+.+. |++|++++|||.++
T Consensus 421 ~l~~s~~lvtaLa~~igy~~a~~ia~~A~~~g~~l~e~~~~~~~-s~eel~~~ldp~~m 478 (478)
T 3ocf_A 421 GAEESISLATALVPVVGYARAAEIAKQALASGQTVMEVAISKGL-DASALTIMLDPLRM 478 (478)
T ss_dssp HHHTCGGGGGGGHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTC-CCHHHHHHTCSCC-
T ss_pred HHHhCccHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCC-CHHHHHHhcCcccC
Confidence 99999999999999999999999999999999999999999986 99999999999763
No 5
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=100.00 E-value=4e-105 Score=885.39 Aligned_cols=463 Identities=63% Similarity=0.977 Sum_probs=442.5
Q ss_pred CCCCcccccccCCccccCCCCCCchHhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Q psy13008 2 GKDGVRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAA 80 (638)
Q Consensus 2 ~~~~~r~e~d~~g~~~~P~~~~yg~~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al 80 (638)
.|+++|+|+|++|+++||.|+|||.||+|++.||++|+. +.|+++|++++.||+|+|++|.++| ||++.+++|.++|
T Consensus 32 ~m~~~r~e~d~~g~~~vp~~~~~g~qt~ra~~nf~i~~~--~~~~~~i~a~~~vk~AaA~an~~lG~l~~~~a~aI~~A~ 109 (495)
T 4hgv_A 32 TMTSTRTETDTFGPIEVASDRYWGAQAQRSLGNFKIGWE--KQPLAIVRALGIVKQAAARANMALGRLDPAIGDAIVKAA 109 (495)
T ss_dssp ---CEEEEEETTEEEEEETTCCCCHHHHHHHHHCCCCSC--BCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCCCeeeecCCCCccCCCccchHHHHHHHHHccCCCCC--CCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 588999999999999999999999999999999999987 4889999999999999999999999 9999999999999
Q ss_pred HHHHcCccccCCccccccccCCcccccchhhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHH
Q psy13008 81 DEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEI 160 (638)
Q Consensus 81 ~~i~~~~~~~~~f~~~~~~~~~~edi~~~vnevie~~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l 160 (638)
++|.+|++ +++|+++++|+|+|++.|||+||||++++.|++|.+.|.+.++|||+|||+|+||||+++||++|++++++
T Consensus 110 ~ei~~g~~-~~~F~~d~~q~gsgt~~nmn~nevian~a~e~lg~~~g~~~~vhpnd~Vh~gqSsnDv~~TA~~l~~~~~~ 188 (495)
T 4hgv_A 110 QEVIDGKL-DEHFPLVVWQTGSGTQSNMNANEVVSNRAIELLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAERV 188 (495)
T ss_dssp HHHHTTSS-GGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTTTCSCCCCCCCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCch-hhccchhhhhhccccccCcchhHHHHHHHHHHcCcccCCCCCCCHHHhccCCCChhhHHHHHHHHHHHHHH
Confidence 99999998 89999999999999999999999999999999998889998999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCC
Q psy13008 161 HNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGL 240 (638)
Q Consensus 161 ~~~L~~~L~~L~~aL~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~ 240 (638)
.+.|.+.|.+|+++|.++|++|++++|+||||+|||+||||||+|++|+++|.||++||.+++++++.+++||+|+||+.
T Consensus 189 ~~~L~~~L~~L~~~L~~kA~~~~~~~~~GRTHlQ~A~P~TlG~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGgtAvGtg~ 268 (495)
T 4hgv_A 189 IHDLLPALKHLHKALEEKVKAFDHIIKIGRTHTQDATPLTLGQEFSGYAAQVASSIKRIEMTLPGLCELAQGGTAVGTGL 268 (495)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTTSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeeecccCCCCceeecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhcc
Confidence 77799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHcCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCCCCC
Q psy13008 241 NTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEP 320 (638)
Q Consensus 241 ~~d~~~~~~v~~~lA~~LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~~~~ 320 (638)
+.++++...+.+++++.+||++.+.+|+++|+++||++++++++++.++++|+|||+||++|+|+|+.||+|+.+|++++
T Consensus 269 ~~~~~~~~~v~~~la~~~gl~f~~a~n~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~S~~~~g~~Ei~~p~~q~ 348 (495)
T 4hgv_A 269 NAPVGFAEKVAEEIAAITGIGFTSAPNKFEALAAHDSMVFSHGAINATAAALFKIANDIRFLGSGPRSGLGELSLPENEP 348 (495)
T ss_dssp TSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSC
T ss_pred cCchhHHHHHHHHHHHHhCCCccccCCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEEecCcCCc
Confidence 99999999999999999999987889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChH
Q psy13008 321 GSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNED 400 (638)
Q Consensus 321 GSSiMPqKrNP~~lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~e 400 (638)
||||||||+||+.+|.++++|+++.|+..++.+....+++|+|...+.+.|.++++++++.++++.++.+|++||+||++
T Consensus 349 GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~~~~e~n~~~~~~~~~ll~s~~~l~~~~~~~~~~~i~gl~vn~e 428 (495)
T 4hgv_A 349 GSSIMPGKVNPTQCEALTQVCVQVFGNHAALTFAGSQGHFELNVYNPLMAYNFLQSVQLLADAAISFTDNCVVGIEARED 428 (495)
T ss_dssp CC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHH
T ss_pred ccccCccccChHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCEECHH
Confidence 99999999999999999999999999999998888888999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhhcCcccccCCC
Q psy13008 401 TIAKHVNDSLMLVTALNPHIGYDKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPE 467 (638)
Q Consensus 401 rm~~~l~~~~~lat~La~~ig~~~Ah~iv~~A~~~g~~l~eal~~~~~Ls~eel~~llDP~~~vg~a 467 (638)
||+++++.+++++|+|++++||+.|++++++|.++|++|+|++.+.+.||++|++++|||.+|+|++
T Consensus 429 rm~~~l~~s~~lvtaL~~~iGy~~A~~iak~A~~~g~~lre~~~~~~~ls~eeld~lldP~~~~gpA 495 (495)
T 4hgv_A 429 NIKAALDRSLMLVTALAPKIGYDNAAKIAKTAHKNGTTLREEAVGGGYVTDEEFDAVVRPETMIGPA 495 (495)
T ss_dssp HHHHHHHHCSGGGGGTHHHHCHHHHHHHHHHHHHHTCCHHHHHHTTTSSCHHHHHHHCCGGGSSSCC
T ss_pred HHHHHHhcChhHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHhCCHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999985
No 6
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=100.00 E-value=2.6e-103 Score=867.48 Aligned_cols=462 Identities=58% Similarity=0.940 Sum_probs=436.6
Q ss_pred CCCcccccccCCccccCCCCCCchHhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
Q psy13008 3 KDGVRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAAD 81 (638)
Q Consensus 3 ~~~~r~e~d~~g~~~~P~~~~yg~~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al~ 81 (638)
|+.+|+|+|++|+++||.++|||.++.|++.||++|+.. .|++++++|+++|+|||+||.++| ||++++++|.++|+
T Consensus 1 m~~~r~e~d~~g~~~vp~~~~~g~~t~r~~~~f~~s~~~--~~~~~i~a~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~ 78 (467)
T 1fur_A 1 MNTVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEK--MPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAAD 78 (467)
T ss_dssp ---CEEEEETTEEEEECTTCCCCHHHHHHHHHCCCSSCB--CCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred CCCcCccccCCCCccCCcccccchhhHHHHHhccCCCcc--CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 445899999999999999999999999999999999863 589999999999999999999999 99999999999999
Q ss_pred HHHcCccccCCccccccccCCcccccchhhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHH
Q psy13008 82 EVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIH 161 (638)
Q Consensus 82 ~i~~~~~~~~~f~~~~~~~~~~edi~~~vnevie~~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~ 161 (638)
+|.++.+ +++|+++++++++++|+|||+|+||++++.|++|++.|+|.++|||+|||+|||||||++|+++|++|+++.
T Consensus 79 ~i~~~~~-~~~f~~~~~q~g~~~~~~mn~~~via~~a~e~~G~~~g~~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~ 157 (467)
T 1fur_A 79 EVLAGQH-DDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALR 157 (467)
T ss_dssp HHHTTTT-GGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCSSTTCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccc-cccccchhhhccccccccccHHHHHHHHHHHHhCcccccccccCchhhcccCCChhhHHHHHHHHHHHHHHH
Confidence 9998776 788999999999999999999999999989999988888756799999999999999999999999999865
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCCC
Q psy13008 162 NRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLN 241 (638)
Q Consensus 162 ~~L~~~L~~L~~aL~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~~ 241 (638)
..|.+.|.+|+++|.++|++|++++||||||+||||||||||||++|+++|.||++||.+++++++.+||||||+||+++
T Consensus 158 ~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGgtAvGT~~~ 237 (467)
T 1fur_A 158 KQLIPQLKTLTQTLNEKSRAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLN 237 (467)
T ss_dssp HTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEeeccccCccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCcchhcCCcc
Confidence 33999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred CCchhhHHHHHHHHHHcCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCCCCCC
Q psy13008 242 TYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPG 321 (638)
Q Consensus 242 ~d~~~~~~v~~~lA~~LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~~~~G 321 (638)
++++++.++.+++|+.|||+..+.+|++||+++||++++++++++.++++|+|||+||++|+|+||+|||||.+|++++|
T Consensus 238 ~~~~~~~~v~~~la~~LGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~gei~lp~~~~G 317 (467)
T 1fur_A 238 THPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPG 317 (467)
T ss_dssp SCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCSEECCCCSCC
T ss_pred CChhHHHHHHHHHHHHhCCCCccCCCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCceeEECCCCCCC
Confidence 99999999999999999999768899999999999999999999999999999999999999999999999999998999
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHH
Q psy13008 322 SSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDT 401 (638)
Q Consensus 322 SSiMPqKrNP~~lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~er 401 (638)
||||||||||+.+|.|+++|+++.|++.+++.....+++|++...+.+.+.++++++++.+++..+..+|+++|+||++|
T Consensus 318 SSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~er 397 (467)
T 1fur_A 318 SSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRER 397 (467)
T ss_dssp CTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHH
T ss_pred CCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCeeCHHH
Confidence 99999999999999999999999999999987777789999998888889999999999999887778899999999999
Q ss_pred HHHhhhhhhhHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhhcCcccccCCC
Q psy13008 402 IAKHVNDSLMLVTALNPHIGYDKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPE 467 (638)
Q Consensus 402 m~~~l~~~~~lat~La~~ig~~~Ah~iv~~A~~~g~~l~eal~~~~~Ls~eel~~llDP~~~vg~a 467 (638)
|+++++.+++++|+|++++||+.|++++++|.++|++++|++.+.+.|+++|++++|||..|+|+.
T Consensus 398 m~~~l~~~~~l~t~La~~lg~~~a~~~~~~a~~~g~~l~e~~~~~~~l~~~e~~~~ldp~~~~~~~ 463 (467)
T 1fur_A 398 INQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVGSM 463 (467)
T ss_dssp HHHHHHHCSTTHHHHHTTSCHHHHHHHHHHHHHHTCCHHHHHHHTTSSCHHHHHHHCCGGGC----
T ss_pred HHHHHHhCccHHHHhHhhccHHHHHHHHHHHHHcCCCHHHHHHhcCCCCHHHHHHhcCHHHHhCcc
Confidence 999999999999999999999999999999999999999999999889999999999999999975
No 7
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=100.00 E-value=1.4e-103 Score=871.74 Aligned_cols=454 Identities=50% Similarity=0.777 Sum_probs=425.0
Q ss_pred CCcccccccCCccccCCCCCCchHhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
Q psy13008 4 DGVRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAADE 82 (638)
Q Consensus 4 ~~~r~e~d~~g~~~~P~~~~yg~~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al~~ 82 (638)
+.+|+|+|++|+++||.++|||.+|.|+++||++|+. +.++++|++|+.||+|+|++|.++| ||++++++|.++|++
T Consensus 30 ~~~r~e~d~~g~~~vp~~~~~G~~t~r~~~~F~is~~--~~~~~~I~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~a~~e 107 (495)
T 4adm_A 30 ANYRIEHDTMGEVRVPAKALWRAQTQRAVENFPISGR--GLERTQIRALGLLKGACAQVNSDLGLLAPEKADAIIAAAAE 107 (495)
T ss_dssp -CEEEEEETTEEEEEETTCSCCHHHHHHHHHCCSSSC--BCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred cccCCccCcCCCccCChhhhcCchhHHHHHhcCCCCC--CCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999986 5889999999999999999999999 999999999999999
Q ss_pred HHcCccccCCccccccccCCcccccchhhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q psy13008 83 VISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHN 162 (638)
Q Consensus 83 i~~~~~~~~~f~~~~~~~~~~edi~~~vnevie~~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~ 162 (638)
|.++.+ +++|+++++++++++++|||+|+||.++. ++| |+| +|||+|||+|||||||++|+++|++|+++.+
T Consensus 108 i~~~~~-~~~f~~~~~q~g~gt~~nmnvnevia~ra--~lG---G~~--vH~~dhVn~g~SsNDv~~Ta~~L~lr~~l~~ 179 (495)
T 4adm_A 108 IADGQH-DDQFPIDVFQTGSGTSSNMNTNEVIASIA--AKG---GVT--LHPNDDVNMSQSSNDTFPTATHIAATEAAVA 179 (495)
T ss_dssp HHTTSC-GGGCCCBSSSCTTCHHHHHHHHHHHHHHH--HHT---TCC--CCTTTTTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcc-cCCCCcchhhccccccccccHHHHHHHHH--HhC---CCc--cCcccccCCCCChhhHHHHHHHHHHHHHHHH
Confidence 998776 88999999999999999999999999865 566 665 6999999999999999999999999998755
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCCCC
Q psy13008 163 RLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNT 242 (638)
Q Consensus 163 ~L~~~L~~L~~aL~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~~~ 242 (638)
.|.+.|.+|+++|.++|++|+|++||||||+|+||||||||||++|+++|.||++||.+++++++.+||||||+||++++
T Consensus 180 ~l~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~PiT~G~~~~~~a~~l~rd~~RL~~~~~~l~~~~LGgtAvGT~~~~ 259 (495)
T 4adm_A 180 HLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGLNA 259 (495)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHccCCeeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeecCCccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred CchhhHHHHHHHHHHcCC-CCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCCCCCC
Q psy13008 243 YVGFAENCTQRISELTGL-PFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPG 321 (638)
Q Consensus 243 d~~~~~~v~~~lA~~LGl-~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~~~~G 321 (638)
+++|+..+.++++++||| +..+.+|+++|+++||++++++++++.++++|+|||+||++|+||||+|||||.+|+.++|
T Consensus 260 ~~~~~~~v~~~la~~lG~~~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~e~gei~lp~~q~G 339 (495)
T 4adm_A 260 PDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLPDLQPG 339 (495)
T ss_dssp CTTHHHHHHHHHHHHHCCTTCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSTTSCCCEECCCC---
T ss_pred ChhHHHHHHHHHHHHhCCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEECCCCCCC
Confidence 999999999999999999 6667899999999999999999999999999999999999999999999999999998999
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHH
Q psy13008 322 SSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDT 401 (638)
Q Consensus 322 SSiMPqKrNP~~lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~er 401 (638)
||||||||||+.+|.++++|++|+|+..++++.+..++++++.++|.+.++++++++++.+++..++.+|++||+||++|
T Consensus 340 SSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~p~i~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~er 419 (495)
T 4adm_A 340 SSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEH 419 (495)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHH
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHcChHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHH
Confidence 99999999999999999999999999999988877889999999998889999999999999988878999999999999
Q ss_pred HHHhhhhhhhHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCC----CCHHHHhhhcCcccccCCC
Q psy13008 402 IAKHVNDSLMLVTALNPHIGYDKAAEIAKHAYKTGITLKEAAVKLGY----LTEQEYDQWVKPEKMLGPE 467 (638)
Q Consensus 402 m~~~l~~~~~lat~La~~ig~~~Ah~iv~~A~~~g~~l~eal~~~~~----Ls~eel~~llDP~~~vg~a 467 (638)
|+++++.+++++|+|++++||+.|+++|++|.++|++|+|++.+.+. |+++|++++|||..|+|++
T Consensus 420 m~~~l~~s~~l~t~La~~igy~~a~~ia~~a~~~g~~l~e~~~~~~~~~~~ls~eel~~~ldp~~~~~~~ 489 (495)
T 4adm_A 420 LRRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLIGDRLSIEDLDRRLDVLAMAKAE 489 (495)
T ss_dssp HHHHHHHCGGGGGGGHHHHCHHHHHHHHHHHHHHTCCHHHHHHHTTCCBTTBCHHHHHHHTCHHHHTTCC
T ss_pred HHHHHhccccHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHhCcccccCCCHHHHHHHcCHHHhcCCc
Confidence 99999999999999999999999999999999999999999998876 9999999999999999975
No 8
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=100.00 E-value=3.7e-103 Score=868.35 Aligned_cols=458 Identities=65% Similarity=1.006 Sum_probs=431.3
Q ss_pred cccccccCCccccCCCCCCchHhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
Q psy13008 6 VRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAADEVI 84 (638)
Q Consensus 6 ~r~e~d~~g~~~~P~~~~yg~~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al~~i~ 84 (638)
+|+|+|++|+++||.++|||.++.|++.||++|+...+.|++++++|+++|+|+|+||.++| ||++++++|.++|++|.
T Consensus 28 ~r~e~d~~g~~~vp~~~~~g~~t~r~~~~f~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~Gil~~~~a~aI~~a~~ei~ 107 (488)
T 1yfm_A 28 FRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEVA 107 (488)
T ss_dssp EEEECSSSCCEEEESSCCCCHHHHHHHTTCCTTGGGGBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred cCcccccCCCcCCCccchhchHHHHHHHhccCCCCcccCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999976335789999999999999999999999 99999999999999999
Q ss_pred cCccccCCccccccccCCcccccchhhHHHHHHHHHHhccCCC-CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q psy13008 85 SGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLG-SKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNR 163 (638)
Q Consensus 85 ~~~~~~~~f~~~~~~~~~~edi~~~vnevie~~l~e~lG~~~g-~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~ 163 (638)
++++ +++|+++.+++++++|+|||+|+||++++.|++|++.| ++ +|||+|||+||||||+++|+++|++|+.+.+.
T Consensus 108 ~~~~-~~~f~~~~~q~g~~t~~nmn~~evia~~a~e~lG~~~g~~~--vHp~d~Vn~g~SsNDv~~Ta~~L~lr~~l~~~ 184 (488)
T 1yfm_A 108 SGKL-DDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKIGSKQ--VHPNNHCNQSQSSNDTFPTVMHIAASLQIQNE 184 (488)
T ss_dssp HTSS-GGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHC-----------CCCCCCCTTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hccc-ccCCCcchhhccccccccccHHHHHHHHHHHHhCccccCCc--cCcccCcCCCCChhhHHHHHHHHHHHHHHHHH
Confidence 8776 78899999999999999999999999998888987777 55 69999999999999999999999999987525
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCCCCC
Q psy13008 164 LLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTY 243 (638)
Q Consensus 164 L~~~L~~L~~aL~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~~~d 243 (638)
|.+.|.+|+++|.++|++|+|++||||||+||||||||||||++|+++|.||++||.+++++++.+||||||+||+++++
T Consensus 185 l~~~L~~L~~~L~~~A~e~~~~v~~GrTHlQ~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~~~ 264 (488)
T 1yfm_A 185 LIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTK 264 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCcEeeceecCccceEeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred chhhHHHHHHHHHHcCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCCCCCCCC
Q psy13008 244 VGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSS 323 (638)
Q Consensus 244 ~~~~~~v~~~lA~~LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~~~~GSS 323 (638)
++|..++.+++|+.|||+..+.+|++|++++||++++++++++.++++|+|||+||++|+|+||+|||||.+|++++|||
T Consensus 265 ~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsS~pr~g~gei~lp~~~~GSS 344 (488)
T 1yfm_A 265 PGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSS 344 (488)
T ss_dssp TTHHHHHHHHHHHHHSSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCCT
T ss_pred hhHHHHHHHHHHHHhCCCCccCccHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCceeEECCCCCCcCC
Confidence 99999999999999999976799999999999999999999999999999999999999999999999999999899999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHHHH
Q psy13008 324 IMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIA 403 (638)
Q Consensus 324 iMPqKrNP~~lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~erm~ 403 (638)
||||||||+.+|.++++|++|+|+..+++..+..++++++.++|.+.++++++++++.+++..+..+|++||+||++||+
T Consensus 345 iMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~p~~~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~erm~ 424 (488)
T 1yfm_A 345 IMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIH 424 (488)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHH
T ss_pred CcccccCcHHHHHHHHHHHHHHhHHHHHHHHHhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHH
Confidence 99999999999999999999999999998877778999999899888999999999999988887789999999999999
Q ss_pred HhhhhhhhHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhhcCcccccCC
Q psy13008 404 KHVNDSLMLVTALNPHIGYDKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGP 466 (638)
Q Consensus 404 ~~l~~~~~lat~La~~ig~~~Ah~iv~~A~~~g~~l~eal~~~~~Ls~eel~~llDP~~~vg~ 466 (638)
++++.+++++|+|++++||+.|++++++|.++|++++|++.+.+.|+++|++++|||..|+|+
T Consensus 425 ~~l~~s~~l~t~La~~lg~~~a~~i~~~a~~~g~~l~e~~~~~~~l~~eel~~~ldp~~~~~~ 487 (488)
T 1yfm_A 425 ELLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHMLGP 487 (488)
T ss_dssp HHHHHCSGGGTTTGGGTCHHHHHHHHHHHHHHTCCHHHHHHHTTSCCHHHHHHHCCGGGCC--
T ss_pred HHHccCchHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHhcCCCCHHHHHHhcCHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999985
No 9
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=2e-102 Score=863.09 Aligned_cols=458 Identities=40% Similarity=0.673 Sum_probs=431.0
Q ss_pred cccccccCCccccCCCCCCchHhhHHhhcCCCCCCCCCC--hHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
Q psy13008 6 VRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERM--PEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAADE 82 (638)
Q Consensus 6 ~r~e~d~~g~~~~P~~~~yg~~~~rai~~f~~~~~~~~~--~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al~~ 82 (638)
+|+|+|++|+++||.|+|||.++.|++.||++|+. +. +++++++|+++|+|||+||+++| ||++++++|.++|++
T Consensus 5 ~r~e~d~~g~~~vp~~~~~g~~t~r~~~~f~~s~~--~~~~~~~~i~~~~~ve~A~a~a~~~~Gii~~~~a~~I~~a~~~ 82 (478)
T 1jsw_A 5 IRIEEDLLGTREVPADAYYGVHTLRAIENFYISNN--KISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDE 82 (478)
T ss_dssp EEEEECSSCEEEEESSCCCCHHHHHHHHHCCSCSC--CSCCTTSHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred cCcccccCCCcCCCCccccchHHHHHHHhCCCcCc--cccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999975 35 89999999999999999999999 999999999999999
Q ss_pred HH-cCccccCCccccccccCCcccccchhhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHH
Q psy13008 83 VI-SGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIH 161 (638)
Q Consensus 83 i~-~~~~~~~~f~~~~~~~~~~edi~~~vnevie~~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~ 161 (638)
|. +++. .++|++++++++++||+|||+|+||++++++++|++.|++.++|||+|||+|||||||++|+++|++|+.+
T Consensus 83 i~~~~~~-~~~f~v~~~~~g~~~~~~mnv~~vIa~~~~e~~g~~~g~~~~lHpnd~Vn~g~SsnDv~~Ta~~L~lr~~l- 160 (478)
T 1jsw_A 83 VLNNGKC-MDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSL- 160 (478)
T ss_dssp HSTTTCS-TTCCCCCSSCCSTTHHHHHHHHHHHHHHHHHTTTSCCTTSCSSCCCCCCSCSCCHHHHHHHHHHHHHHHHH-
T ss_pred HHhcchh-ccCCccchhhccCcccccccHHHHHHHHHHHHcCccccccccccccccccCCCChhhHHHHHHHHHHHHHH-
Confidence 98 8766 78899999999999999999999999999999997778744579999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCCC
Q psy13008 162 NRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLN 241 (638)
Q Consensus 162 ~~L~~~L~~L~~aL~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~~ 241 (638)
+.|.+.|.+|+++|.++|++|++++||||||+||||||||||||++|+++|.||++||.+++++++.+||||||+||+++
T Consensus 161 ~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~RL~~~~~~~~~~~lGg~AvGT~~~ 240 (478)
T 1jsw_A 161 IKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLN 240 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGCEEECCGGGSCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSCCSSSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeeeccccCccceeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCCcc
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred CCchhhHHHHHHHHHHcCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCCCCCC
Q psy13008 242 TYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPG 321 (638)
Q Consensus 242 ~d~~~~~~v~~~lA~~LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~~~~G 321 (638)
++++++..+.+++++.|||+..+.+|++|++++||+++|++++++.++++|+|||+||++|+|+||+|||||.+|++++|
T Consensus 241 ~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~pr~e~gei~lp~~~~G 320 (478)
T 1jsw_A 241 TPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAG 320 (478)
T ss_dssp CTTTHHHHHHHHHHHHHCCCCEECSCSSSBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSCCCEECCCCSCC
T ss_pred CCcchHHHHHHHHHHHcCCCCCcCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCceeEECCCCCCC
Confidence 99999999999999999999768999999999999999999999999999999999999999999999999999998999
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHH
Q psy13008 322 SSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDT 401 (638)
Q Consensus 322 SSiMPqKrNP~~lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~er 401 (638)
||||||||||+.+|+++++|+++.|++.+++.....++++++...|.+.+++++++.++.+++..+..+|+++|+||++|
T Consensus 321 SSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~e~~~~~p~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~er 400 (478)
T 1jsw_A 321 SSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEV 400 (478)
T ss_dssp CSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHH
T ss_pred CCCCCcccCCHHHHHHHHHHHHHHhHHHHHHHHHhccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHccCeecHHH
Confidence 99999999999999999999999999999987777788999888888789999999999988877766899999999999
Q ss_pred HHHhhhhhhhHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhhcCcccccCCC
Q psy13008 402 IAKHVNDSLMLVTALNPHIGYDKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPE 467 (638)
Q Consensus 402 m~~~l~~~~~lat~La~~ig~~~Ah~iv~~A~~~g~~l~eal~~~~~Ls~eel~~llDP~~~vg~a 467 (638)
|+++++.+++++|+|++++||+.|++++++|.++|++++|++.+.+.|+++|++++|||.+|+|+.
T Consensus 401 m~~~l~~~~~l~t~La~~lg~~~a~~~v~~a~~~g~~l~e~~~~~~~l~~~~~~~~ldp~~~~~~~ 466 (478)
T 1jsw_A 401 CEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPA 466 (478)
T ss_dssp HHHHHTTCTTCGGGTHHHHCHHHHHHHHHHHHTTCCCHHHHHHHHTSSCSHHHHTSCCC-------
T ss_pred HHHHHHhCchHHHHHHHhhhHHHHHHHHHHHHHhCCCHHHHHHhcCCCCHHHHHHhCCHHHHhCCC
Confidence 999999999999999999999999999999999999999999988889999999999999999975
No 10
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=100.00 E-value=2.8e-102 Score=859.39 Aligned_cols=459 Identities=57% Similarity=0.860 Sum_probs=433.4
Q ss_pred cccccccCCccccCCCCCCchHhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
Q psy13008 6 VRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAADEVI 84 (638)
Q Consensus 6 ~r~e~d~~g~~~~P~~~~yg~~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al~~i~ 84 (638)
+|+|+|++|+++||.++|||.++.|++.||++|+...+.|++++++|+++|+|||+||+++| ||++++++|.++|++|.
T Consensus 3 ~r~e~d~~g~~~vp~~~~~g~~t~~~~~~f~~s~~~~~~~~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~ 82 (466)
T 1vdk_A 3 YRIERDTMGEVRVPADKYWGAQTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQAAEEVV 82 (466)
T ss_dssp -CEEEETTEEEECCTTCCCCHHHHHHHHHCCSSTTTCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcCCCcccccchhhHHHHHhccCCCccccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999976322289999999999999999999999 99999999999999999
Q ss_pred cCccccCCccccccccCCcccccchhhHHHHHHHHHHhccCCC-CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q psy13008 85 SGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLG-SKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNR 163 (638)
Q Consensus 85 ~~~~~~~~f~~~~~~~~~~edi~~~vnevie~~l~e~lG~~~g-~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~ 163 (638)
++.+ +++|+++.++.+.++|+|||+|+||++++.|.+|++.| ++ +|||+|||+|||||||++|+++|++|+.+.+.
T Consensus 83 ~~~~-~~~f~~~~~q~~~~~~~~mn~~~via~~a~e~~g~~~g~~~--lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~~~ 159 (466)
T 1vdk_A 83 QGKW-DDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKPLGSKY--AHPNDHVNRGQSSNDTFPTAMYVAVALALHQR 159 (466)
T ss_dssp TTTT-GGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTSCS--SCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred hccc-ccCCCchhhhccccccccccHHHHHHHHHHHHhCccccccc--cccccCcCCCCChhhHHHHHHHHHHHHHHHHH
Confidence 8766 77899999999999999999999999998899997777 65 69999999999999999999999999987535
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCCCCC
Q psy13008 164 LLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTY 243 (638)
Q Consensus 164 L~~~L~~L~~aL~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~~~d 243 (638)
|.+.|.+|+++|.++|++|++++||||||+||||||||||||++|+++|.||++||.+++++++.+||||||+||+++++
T Consensus 160 l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~AvGT~~~~~ 239 (466)
T 1vdk_A 160 LYPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAH 239 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHGGGGEECTTCTTTSSCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHccCCeeeccccCccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred chhhHHHHHHHHHHcCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCCCCCCCC
Q psy13008 244 VGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSS 323 (638)
Q Consensus 244 ~~~~~~v~~~lA~~LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~~~~GSS 323 (638)
++|+.++.+++|++|||+.++.+|++|++++||+++|++++++.++++|+|||+||++|+|+||+|||||.+|++++|||
T Consensus 240 ~~~~~~v~~~la~~LG~~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~gei~lp~~~~GSS 319 (466)
T 1vdk_A 240 PRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEITIPANEPGSS 319 (466)
T ss_dssp TTHHHHHHHHHHHHHSSCCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCSEECCCCSCCSS
T ss_pred chHHHHHHHHHHHHcCCCCCCCcchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEECCCCCCcCC
Confidence 99999999999999999976799999999999999999999999999999999999999999999999999999899999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHHHH
Q psy13008 324 IMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIA 403 (638)
Q Consensus 324 iMPqKrNP~~lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~erm~ 403 (638)
||||||||+.+|.|+++|+++.|++.+++.....++++++..++.+.+++++++.++.+++..+..+|+++|+||++||+
T Consensus 320 iMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~ 399 (466)
T 1vdk_A 320 IMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIE 399 (466)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCBTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCEEcHHHHH
Confidence 99999999999999999999999999998877778899988888878899999999998888776789999999999999
Q ss_pred HhhhhhhhHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhhcCcccccCCC
Q psy13008 404 KHVNDSLMLVTALNPHIGYDKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPE 467 (638)
Q Consensus 404 ~~l~~~~~lat~La~~ig~~~Ah~iv~~A~~~g~~l~eal~~~~~Ls~eel~~llDP~~~vg~a 467 (638)
+++..+++++|+|++++||+.|++++++|.++|++++|++.+.+.|+++|++++|||..|+|+.
T Consensus 400 ~~l~~~~~l~t~La~~lg~~~a~~~v~~a~~~g~~l~e~~~~~~~l~~~~~~~~ldp~~~~~~~ 463 (466)
T 1vdk_A 400 EYLQKNPMLATALNKAIGYDKAAEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKPH 463 (466)
T ss_dssp HHHTTCGGGGHHHHHHHCSHHHHTTTTTSCC--CCHHHHHHHTSSSCHHHHHHHCCHHHHHCCC
T ss_pred HHHHhcchHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHhcCCCCHHHHHHHcCHHHhcCCC
Confidence 9999999999999999999999999999999999999999998889999999999999999975
No 11
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=100.00 E-value=5.3e-80 Score=680.64 Aligned_cols=415 Identities=21% Similarity=0.248 Sum_probs=351.1
Q ss_pred CCCCCCchHhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCccccCCccccc
Q psy13008 19 PNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAADEVISGKLYEDHFPLSI 97 (638)
Q Consensus 19 P~~~~yg~~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al~~i~~~~~~~~~f~~~~ 97 (638)
|++.+|+..+|+++| ++++++++|+++|+|||+||.++| ||++++++|.++|++|.. ++ ..+.
T Consensus 7 ~~~~ry~~~~~~~~~----------sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~-~~-----~~~~ 70 (454)
T 1q5n_A 7 LYASLFYQRDVTEIF----------SDRALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAID-KI-----DFDA 70 (454)
T ss_dssp TTHHHHSCHHHHHHT----------SHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTHHH-HC-----CHHH
T ss_pred ccccccCcHHHHHHc----------CcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhh-cC-----CHHH
Confidence 566699999999999 899999999999999999999999 999999999999987642 33 3333
Q ss_pred cccCCcccccchhhHHHHH--HHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13008 98 WQTGSGTQTNMNVNEVISN--RAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDAL 175 (638)
Q Consensus 98 ~~~~~~edi~~~vnevie~--~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~L~~~L~~L~~aL 175 (638)
++.+.++ +.|+|+++ .+.+++|...| ..|+|||+|||||||++|+++|++|+.+. .|.+.|..|+++|
T Consensus 71 ~~~~~~~----~~~dVia~~~~l~e~~g~~~g-----~~~~~vH~g~SsnD~~~Ta~~L~~r~~l~-~l~~~l~~L~~~L 140 (454)
T 1q5n_A 71 LATATGL----AGNIAIPFVKQLTAIVKDADE-----DAARYVHWGATSQDILDTACILQCRDALA-IVQNQVQQCYETA 140 (454)
T ss_dssp HHHHHHH----HSSSHHHHHHHHHHHHHTTCT-----TGGGGTTTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHhhc----cCCcHHHHHHHHHHHhccccC-----CccccccCCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3322222 35555555 55788852211 13568889999999999999999999875 6999999999999
Q ss_pred HHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCCCCCchhhHHHHHHHH
Q psy13008 176 DKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRIS 255 (638)
Q Consensus 176 ~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~~~d~~~~~~v~~~lA 255 (638)
.++|++|+|++||||||+||||||||||||++|+++|.||++||.+++++++.+|||| |+||+.+..+ +++.++++++
T Consensus 141 ~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-AvGT~~~~~~-~~~~~~~~~a 218 (454)
T 1q5n_A 141 LSQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGG-AVGSLASLQD-QGSIVVEAYA 218 (454)
T ss_dssp HHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCC-TTSSCGGGTT-CHHHHHHHHH
T ss_pred HHHHHHhcCceeeccccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCch-HhhcCccccc-ccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 5699988755 8889999999
Q ss_pred HHcCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCC--CCCCCCCCCCCCChhH
Q psy13008 256 ELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPE--NEPGSSIMPGKVNPTQ 333 (638)
Q Consensus 256 ~~LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~--~~~GSSiMPqKrNP~~ 333 (638)
+.|||+.++.+ ++.+||++++++++++.++++|+|||+||++|++ +||||+.+|. +++|||||||||||+.
T Consensus 219 ~~LG~~~~~~~----~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~---~e~gEl~~p~~~~q~GSSiMP~K~NP~~ 291 (454)
T 1q5n_A 219 KQLKLGQTACT----WHGERDRIVEIASVLGIITGNVGKMARDWSLMMQ---TEIAEVFEPTAKGRGGSSTMPHKRNPVA 291 (454)
T ss_dssp HHHTCBCCSSC----CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---TTTCCEECCC-------------CCCHH
T ss_pred HHhCcCCCCCC----CccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccchhccccccCCCCCccCCCCCCCHH
Confidence 99999985544 4679999999999999999999999999999995 7999999996 6899999999999999
Q ss_pred HHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHHHHHhhhhhhhHH
Q psy13008 334 VEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLV 413 (638)
Q Consensus 334 lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~erm~~~l~~~~~la 413 (638)
+|+++++|++++|++.+++. +.+++||+|.+.+.+.+.+++++..+.+.++.++.+|+++|+||++||+++++.+.+++
T Consensus 292 ~E~i~~~a~~v~g~~~~~~~-~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~ 370 (454)
T 1q5n_A 292 AASVLAAANRVPALMSSIYQ-SMVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLI 370 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCCCTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHTTTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHH-hccchhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHhCcChh
Confidence 99999999999999988875 46789999988877667788777777777888899999999999999999998666553
Q ss_pred ------HhcCCCCCHHHHHHHH----HHHHHcCCCHHHHHHHc----CCCCHHHHhhhcCcccccCCCCC
Q psy13008 414 ------TALNPHIGYDKAAEIA----KHAYKTGITLKEAAVKL----GYLTEQEYDQWVKPEKMLGPEYH 469 (638)
Q Consensus 414 ------t~La~~ig~~~Ah~iv----~~A~~~g~~l~eal~~~----~~Ls~eel~~llDP~~~vg~a~~ 469 (638)
+.|++++||++||+++ ++|.++|++|+|++.+. +.|+++|++++|||.+|+|++++
T Consensus 371 ~ae~l~~~L~~~ig~~~A~~iv~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~g~a~~ 440 (454)
T 1q5n_A 371 MAEAVMMALAPHMGRLNAHHVVEAACKTAVAEQKHLKDIISQVDEVKQYFNPSQLDEIFKPESYLGNIQD 440 (454)
T ss_dssp GHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTCCHHHHHTTCHHHHTTCCHHHHHHHTCGGGGCTTHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCHHHHHhcchhhhcCCCHHHHHHhCCHHHHcCcHHH
Confidence 5677779999999976 67789999999998876 78999999999999999997765
No 12
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=100.00 E-value=4.1e-80 Score=680.82 Aligned_cols=414 Identities=22% Similarity=0.255 Sum_probs=353.4
Q ss_pred cCCCCCCch-HhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCccccCCccc
Q psy13008 18 VPNDKYYGA-QTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAADEVISGKLYEDHFPL 95 (638)
Q Consensus 18 ~P~~~~yg~-~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al~~i~~~~~~~~~f~~ 95 (638)
.|++ +|+. ++|+++| ++++++++|++||+|||++|.++| ||++++++|.++|++ ++ |++
T Consensus 4 ~~~~-ry~~~~~~~~i~----------s~~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~---~~-----f~~ 64 (450)
T 1re5_A 4 QLFD-AYFTAPAMREIF----------SDRGRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQA---ER-----YDT 64 (450)
T ss_dssp CTTH-HHHSCHHHHHHT----------SHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHCCG---GG-----SCH
T ss_pred cchh-hccCCHHHHHHc----------CcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhc---CC-----CCH
Confidence 3666 8877 9999999 899999999999999999999999 999999999999854 11 333
Q ss_pred cccccCCcccccchhhHHHHH--HHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13008 96 SIWQTGSGTQTNMNVNEVISN--RAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHD 173 (638)
Q Consensus 96 ~~~~~~~~edi~~~vnevie~--~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~L~~~L~~L~~ 173 (638)
+.++.+.++ +.|+|+++ .+.+++|... + .+|+|||+|||||||++|+++|++|+.+. .|.+.|.+|++
T Consensus 65 ~~~~~~~~~----~~~dV~a~~~~l~e~~g~~~----~-~~~~~vh~g~SsnD~~~Ta~~l~lr~~l~-~l~~~l~~L~~ 134 (450)
T 1re5_A 65 GALANAIAT----AGNSAIPLVKALGKVIATGV----P-EAERYVHLGATSQDAMDTGLVLQLRDALD-LIEADLGKLAD 134 (450)
T ss_dssp HHHHHHHHH----HSSSHHHHHHHHHHHHHHHC----G-GGGGGTTTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHhc----cCccHHHHHHHHHHHhCCCC----C-cccccccCCCChhhhHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 333222121 24444444 4568887310 0 14678999999999999999999999875 69999999999
Q ss_pred HHHHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCCCCCchhhHHHHHH
Q psy13008 174 ALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQR 253 (638)
Q Consensus 174 aL~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~~~d~~~~~~v~~~ 253 (638)
+|.++|++|+|++||||||+||||||||||||++|+++|.||++||.+++++++.+|||| |+||+.+++++ +..++++
T Consensus 135 ~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGG-AvGt~~~~~~~-~~~~~~~ 212 (450)
T 1re5_A 135 TLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGG-ASGSLAALGSK-AMPVAEA 212 (450)
T ss_dssp HHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCC-TTSSCGGGGGG-HHHHHHH
T ss_pred HHHHHHHHccCCeeeccccCccCccCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc-hhcCCcccCcc-hHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 58999999887 8889999
Q ss_pred HHHHcCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCC--CCCCCCCCCCCCCh
Q psy13008 254 ISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPE--NEPGSSIMPGKVNP 331 (638)
Q Consensus 254 lA~~LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~--~~~GSSiMPqKrNP 331 (638)
+++.|||+.++.+ |+++||++++++++++.++++|+|||+||++|++ +|||||.+|. +++|||||||||||
T Consensus 213 la~~LG~~~~~~~----~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~---~e~~El~~p~~~~q~GSSiMP~K~NP 285 (450)
T 1re5_A 213 LAEQLKLTLPEQP----WHTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQ---TEAGEVFEPSAPGKGGSSTMPHKRNP 285 (450)
T ss_dssp HHHHHTCBCCSSC----CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---TTTCCEECCCCC----------CCCC
T ss_pred HHHHhCcCCCCcc----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCcceeecccccCCCccccCCCCcCC
Confidence 9999999985433 6999999999999999999999999999999994 7999999996 58999999999999
Q ss_pred hHHHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHHHHHhhhhhhh
Q psy13008 332 TQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLM 411 (638)
Q Consensus 332 ~~lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~erm~~~l~~~~~ 411 (638)
+.+|.++++|+++.|++.+++.+ .+.+||+|.+.+.+.+.+++++..+.++++.++.+|+++|+||++||+++++.+++
T Consensus 286 ~~~E~i~~~a~~v~g~~~~~~~~-~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~ 364 (450)
T 1re5_A 286 VGAAVLIGAATRVPGLLSTLFAA-MPQEHERSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQG 364 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-CCCCTTBCSSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-ChhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHHhCcC
Confidence 99999999999999999888754 46799999998888889999999999999999999999999999999999986666
Q ss_pred HH------HhcCCCCCHHHHHHHH----HHHHHcCCCHHHHHHHc----CCCCHHHHhhhcCcccccCCCCCC
Q psy13008 412 LV------TALNPHIGYDKAAEIA----KHAYKTGITLKEAAVKL----GYLTEQEYDQWVKPEKMLGPEYHP 470 (638)
Q Consensus 412 la------t~La~~ig~~~Ah~iv----~~A~~~g~~l~eal~~~----~~Ls~eel~~llDP~~~vg~a~~~ 470 (638)
++ +.|++++||++||+++ ++|.++|++|+|++.+. +.|+++|++++|||.+|+|+++.+
T Consensus 365 ~~~Ae~l~~~L~~gig~~~A~~~v~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~a~~~ 437 (450)
T 1re5_A 365 LVLAEAVSIVLAQRLGRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGEELDRLLDPAHYLGQARVW 437 (450)
T ss_dssp GGGHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHTCHHHHHHSCHHHHHHHTCGGGCCTTHHHH
T ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHhChhhccCCCHHHHHHhcCHHHHhhhHHHH
Confidence 54 6677799999999764 56789999999999876 679999999999999999987654
No 13
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=8.7e-81 Score=687.63 Aligned_cols=436 Identities=22% Similarity=0.323 Sum_probs=378.2
Q ss_pred CCCCch----HhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCccccCCccc
Q psy13008 21 DKYYGA----QTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAADEVISGKLYEDHFPL 95 (638)
Q Consensus 21 ~~~yg~----~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al~~i~~~~~~~~~f~~ 95 (638)
+++||+ ++.|.+.+|++|+. .|..++++++.+|+|||+||.++| ||++++++|.++|++|.++.. +++|++
T Consensus 3 ~~~~g~r~~~~t~~~~~~f~~s~~---~d~~l~~~~i~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~-~~~f~~ 78 (462)
T 2e9f_A 3 HRTWGGRFGEGPDALAARFNASLA---FDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLDRIEEEIE-AGTFPW 78 (462)
T ss_dssp -----------CCSHHHHHHCCHH---HHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-HTCSCC
T ss_pred ccccCCccchhhHHHHHhccCCCc---cCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHh-cccCCc
Confidence 468888 89999999998874 688999999999999999999999 999999999999999876443 667777
Q ss_pred cccccCCcccccchhhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13008 96 SIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDAL 175 (638)
Q Consensus 96 ~~~~~~~~edi~~~vnevie~~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~L~~~L~~L~~aL 175 (638)
+. .++|+||+ +++++.+++| +.|+ +||+|||||||++|+++|++|+.+. .|.+.|.+|+++|
T Consensus 79 ~~----~~~dv~~~----~~~~l~e~~g-~~g~--------~vH~g~SsnDv~~Ta~~l~lr~~l~-~l~~~l~~L~~~L 140 (462)
T 2e9f_A 79 RE----ELEDVHMN----LEARLTELVG-PPGG--------KLHTARSRNDQVATDLRLYLRGAID-ELLALLLALRRVL 140 (462)
T ss_dssp CG----GGCSHHHH----HHHHHHHHHC-TTHH--------HHTTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred CC----CCCchHHH----HHHHHHHHcc-cccc--------ceecCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 53 47999999 7888999998 4543 5667999999999999999999875 6999999999999
Q ss_pred HHHHHHhccc--ccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccc-cCCCCCCchhhHHHHH
Q psy13008 176 DKKSQEFQNI--IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAV-GTGLNTYVGFAENCTQ 252 (638)
Q Consensus 176 ~~lA~~~~dt--~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAv-GT~~~~d~~~~~~v~~ 252 (638)
.++|++|+|+ +||||||+||||||||||||++|+++|.||++||.+++++++.+||||||+ ||+++++++
T Consensus 141 ~~~A~~~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~~------- 213 (462)
T 2e9f_A 141 VREAEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAALAGTGFPIDRH------- 213 (462)
T ss_dssp HHHHHHTTTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCEECTTCCSSSCCSSCCCHH-------
T ss_pred HHHHHHccCcCccccCcccCccCeeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccCCCCCCHH-------
Confidence 9999999999 999999999999999999999999999999999999999999999999987 999999874
Q ss_pred HHHHHcCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCCCC-CCCCCCCCCCCh
Q psy13008 253 RISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENE-PGSSIMPGKVNP 331 (638)
Q Consensus 253 ~lA~~LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~~~-~GSSiMPqKrNP 331 (638)
++++.|||+. +..|++||+++||++++++++++.++++|+|||+||++|+|+ |||||++|+.. +|||||||||||
T Consensus 214 ~~a~~LG~~~-~~~n~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~s~---e~g~iel~e~~~~GSSiMP~K~NP 289 (462)
T 2e9f_A 214 FTARELGFKA-PMRNSLDAVASRDFALEVLSALNIGMLHLSRMAEELILYSTE---EFGFVEVPDAFATGSSIMPQKKNP 289 (462)
T ss_dssp HHHHHTTCSE-ECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTST---TTCCEECCGGGCEECSSSSSCEEC
T ss_pred HHHHHhCCCC-CCCCcHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCCcEEecCCCCCCCCCCCCCcCC
Confidence 5999999995 789999999999999999999999999999999999999985 69999999874 699999999999
Q ss_pred hHHHHHHHHHHHHhccHHHHHh--cccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHHHHHhhhhh
Q psy13008 332 TQVEALTMVAAQVMGNHVAVTV--GGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDS 409 (638)
Q Consensus 332 ~~lE~ir~~a~~v~G~~~~~~~--~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~erm~~~l~~~ 409 (638)
+.+|+++++|+++.|++.+++. .+.+.+++++.+.+ ...+++++..+..++. .+..++++|+||+++|++++..+
T Consensus 290 ~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~~rDl~~~--~~~l~~s~~~~~~~l~-~~~~~l~gl~vn~e~m~~~l~~~ 366 (462)
T 2e9f_A 290 DILELIRAKAGRVLGAFVGLSAVVKGLPLAYNKDLQED--KEPLLDALATYRDSLR-LLAALLPGLKWRRERMWRAAEGG 366 (462)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHTTCCSSBCGGGGGG--HHHHHHHHHHHHHHHH-HHHHHGGGCEECHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHhhhchhhh--HhHHHHHHHHHHHHHH-HHHHHhCcCEECHHHHHHHHhcC
Confidence 9999999999999999998874 55667888877654 3457777777776555 55579999999999999999999
Q ss_pred hhHHHhcCC-----CCCHHHHHHHH----HHHHHcCCCHHHHHHHcCCCCHHHHhhhcCcccccCCCCCCccCccchhhc
Q psy13008 410 LMLVTALNP-----HIGYDKAAEIA----KHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEYHPYFKPDNNETI 480 (638)
Q Consensus 410 ~~lat~La~-----~ig~~~Ah~iv----~~A~~~g~~l~eal~~~~~Ls~eel~~llDP~~~vg~a~~~~~~~dv~~~~ 480 (638)
++++|+|++ ++||++||+++ ++|.++|++++| +..++++++ +..+++|+.+ +
T Consensus 367 ~~~at~l~~~Lv~~G~~~r~ay~~v~~~~~~a~~~g~~l~e-------~~~~~~~~~-----------~~~l~~~l~~-~ 427 (462)
T 2e9f_A 367 YTLATELADYLAEKGLPFREAHHVVGRLVRRLVEEGRALKD-------LTLEELQAH-----------HPLFAEDALP-L 427 (462)
T ss_dssp STTHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHTTCCGGG-------CCHHHHHHH-----------CTTCCGGGGG-G
T ss_pred ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHCcCHHH-------HHHHHHHHh-----------hhhhHHHHHH-h
Confidence 998887754 57999999875 467789999987 777777765 3445678887 9
Q ss_pred cchhhHHHHHhhhcCCCCCCCCCCchhhhhc
Q psy13008 481 FHTEKVISQQILAAKVLPPWSRPSCPQARSI 511 (638)
Q Consensus 481 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 511 (638)
+|++++|+++...||++|..+.-...++++.
T Consensus 428 ldp~~~~~~r~~~gG~a~~~v~~~i~~~~~~ 458 (462)
T 2e9f_A 428 LRLETAIHRRRSYGGTAPEAVRERLEEAKKE 458 (462)
T ss_dssp GSHHHHTTSCCSTTSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHhcCcCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999887777766654
No 14
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=100.00 E-value=1.3e-79 Score=676.92 Aligned_cols=410 Identities=20% Similarity=0.209 Sum_probs=346.5
Q ss_pred cCCCCCCchHhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCccccCCcccc
Q psy13008 18 VPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAADEVISGKLYEDHFPLS 96 (638)
Q Consensus 18 ~P~~~~yg~~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al~~i~~~~~~~~~f~~~ 96 (638)
.|++.+|+..+|+.+| ++++++++|+++|+|+|+||.++| ||++++++|.++|++ +++ ..+
T Consensus 6 ~~~~~ry~~~~~~~~~----------sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~---~~~-----~~~ 67 (451)
T 3c8t_A 6 PLYGRSFADDKMRELF----------SAQSFISRCVETEVALARAQARLGIIPEDAAAGITAAART---FAP-----EME 67 (451)
T ss_dssp CCSSCCCSCHHHHHHT----------SHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH---CCC-----CHH
T ss_pred CccccccCcHHHHHHc----------CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhh---cCC-----CHH
Confidence 4778899999999999 899999999999999999999999 999999999999975 222 222
Q ss_pred ccccCCcccccchhhHHHHH--HHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13008 97 IWQTGSGTQTNMNVNEVISN--RAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDA 174 (638)
Q Consensus 97 ~~~~~~~edi~~~vnevie~--~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~L~~~L~~L~~a 174 (638)
.++.+.++ +.|+|+++ .+.+++|+ .|+ +||+|||||||++|+++|++|+.+. .|.+.|.+|+++
T Consensus 68 ~~~~~~~~----~~~dVia~~~~l~e~~g~-~g~--------~vH~g~SsnDv~~Ta~~L~lr~~l~-~l~~~l~~L~~~ 133 (451)
T 3c8t_A 68 RLRDDTEI----VGYPILPLVEQLSAHAGE-AGK--------YLHWGATTQDIMDTATVLQIRDGLA-LISRRIESVRKA 133 (451)
T ss_dssp HHHHHHHH----HSSSHHHHHHHHHHHHGG-GGG--------GSSSSCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHhhc----CCCcHHHHHHHHHHHccc-ccc--------cccCCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 22222222 34555555 55788884 443 5667999999999999999999875 699999999999
Q ss_pred HHHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCCCCCchhhHHHHHHH
Q psy13008 175 LDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRI 254 (638)
Q Consensus 175 L~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~~~d~~~~~~v~~~l 254 (638)
|.++|++|++++||||||+||||||||||||++|+++|.||++||.+++++++.+|||| |+||+.+..+ +++.+++++
T Consensus 134 L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-AvGT~~~~~~-~~~~~~~~~ 211 (451)
T 3c8t_A 134 LAALARNHRDTPMAGRTHLQHALPVTFGYKAAVWLSAFDRHAARLEEISPRVLVVEFSG-ASGTLASLGT-RGLDVQREL 211 (451)
T ss_dssp HHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCBCCCCC-TTSSCGGGTT-CHHHHHHHH
T ss_pred HHHHHHHccCceeecccCCCCceeehHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCch-hhhcCccccc-ccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 5799988755 888999999
Q ss_pred HHHcCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCC--CCCCCCCCCCCCChh
Q psy13008 255 SELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPE--NEPGSSIMPGKVNPT 332 (638)
Q Consensus 255 A~~LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~--~~~GSSiMPqKrNP~ 332 (638)
++.|||+.++.+ ++.+||+++|++++++.++++|+|||+||++|++ +|||||.+|. +++|||||||||||+
T Consensus 212 a~~LGl~~~~~~----~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~---~e~gEl~~p~~~~q~GSSiMP~K~NP~ 284 (451)
T 3c8t_A 212 ARELNLGVPSIT----WHSARDAVAETVQFLALVSGSLGKLAMDISIMMT---TELGEVAEPFVRHRGASSTMPQKQNPV 284 (451)
T ss_dssp HHHHTCBCCSSC----CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---TTTCCEECC---------------CCH
T ss_pred HHHhCCCCCCCC----CccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---ccccccccccccCCCCCCCCCCCcCCH
Confidence 999999985544 3679999999999999999999999999999995 7999999996 689999999999999
Q ss_pred HHHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHHHHHhhhhhhhH
Q psy13008 333 QVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLML 412 (638)
Q Consensus 333 ~lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~erm~~~l~~~~~l 412 (638)
.+|.++++|++++|++.+++. +.+++||+|.+.+.+.+.+++++..+.+.++.++.+|++||+||++||+++++.+.++
T Consensus 285 ~~E~i~~~a~~v~g~~~~~~~-~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~ 363 (451)
T 3c8t_A 285 SCELILAGARIVRNHATSMLD-AMIHDFERATGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDHSRGL 363 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HTCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHHHHHHHHTTTTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCchhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHHhccCh
Confidence 999999999999999988875 4678999998877666777777777777778889999999999999999999866655
Q ss_pred H------HhcCCCCCHHHHHHHH----HHHHHcCCCHHHHHHHc----CCCCHHHHhhhcCcccccCCCCC
Q psy13008 413 V------TALNPHIGYDKAAEIA----KHAYKTGITLKEAAVKL----GYLTEQEYDQWVKPEKMLGPEYH 469 (638)
Q Consensus 413 a------t~La~~ig~~~Ah~iv----~~A~~~g~~l~eal~~~----~~Ls~eel~~llDP~~~vg~a~~ 469 (638)
+ +.|++++||++||+++ ++|.++|++|+|++.+. +.|+++|++++|||.+|+|+++.
T Consensus 364 ~~ae~l~~~L~~~ig~~~A~~iv~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~~~~ 434 (451)
T 3c8t_A 364 IVAEAVMMALAPHTGRKEAHDIVYLGCRRAVEDKTGLFEVLRTMPEVAKPLGEEALRDLTDPRNYLGSAGA 434 (451)
T ss_dssp GGHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCHHHHHTTCHHHHHHHCHHHHHHHTCGGGCCTTHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCHHHHHhcChhhhccCCHHHHHHhCCHHHHhchHHH
Confidence 4 5677779999999976 67789999999998876 66899999999999999998765
No 15
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=100.00 E-value=1.7e-80 Score=686.22 Aligned_cols=435 Identities=18% Similarity=0.243 Sum_probs=376.9
Q ss_pred CCCchHhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCccccCCcccccccc
Q psy13008 22 KYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAADEVISGKLYEDHFPLSIWQT 100 (638)
Q Consensus 22 ~~yg~~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al~~i~~~~~~~~~f~~~~~~~ 100 (638)
.+|+.++.|.+.+|++|+. .|+.++++|+++|+|||+||.++| ||++++++|.++|++|.++.. +++|+++.
T Consensus 13 ~r~~~~~~~~~~~f~~s~~---~d~~~~~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~-~~~f~~~~--- 85 (468)
T 1k7w_A 13 GRFSGSTDPIMEKLNSSIA---YDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWS-KGVFVVKQ--- 85 (468)
T ss_dssp ------CCHHHHHHHCCHH---HHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-HTCCCCCT---
T ss_pred cccchhHHHHHHHccCCCc---ccHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhhh-cccCccCC---
Confidence 3444588888888888764 689999999999999999999999 999999999999999876443 56777653
Q ss_pred CCcccccchhhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13008 101 GSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQ 180 (638)
Q Consensus 101 ~~~edi~~~vnevie~~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~L~~~L~~L~~aL~~lA~ 180 (638)
.++|+||+ +++++.+++| +.|+ +||+|||||||++|+++|++|+.+. .|.+.|.+|+++|.++|+
T Consensus 86 -~~~dv~m~----~~~~l~e~~g-~~g~--------~vH~g~SsnDv~~Ta~~l~lr~~l~-~l~~~L~~L~~~L~~~A~ 150 (468)
T 1k7w_A 86 -SDEDIHTA----NERRLKELIG-DIAG--------KLHTGRSRNDQVVTDLKLFMKNSLS-IISTHLLQLIKTLVERAA 150 (468)
T ss_dssp -TCCSHHHH----HHHHHHHHHC-GGGG--------GGGTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred -CCCchHHH----HHHHHHHHcc-cccc--------ceecCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 57999999 7889999998 5554 4667999999999999999999875 699999999999999999
Q ss_pred HhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccc-cCCCCCCchhhHHHHHHHHHHcC
Q psy13008 181 EFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAV-GTGLNTYVGFAENCTQRISELTG 259 (638)
Q Consensus 181 ~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAv-GT~~~~d~~~~~~v~~~lA~~LG 259 (638)
+|+|++||||||+||||||||||||++|+++|.||++||.+++++++.+||||||+ ||+++++++ ++++.||
T Consensus 151 ~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~~-------~la~~LG 223 (468)
T 1k7w_A 151 IEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDRE-------MLRSELE 223 (468)
T ss_dssp HTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSEECTTCTTTTCCTTCCCHH-------HHHHHHT
T ss_pred HccCCEeeccccCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCCCCCChH-------HHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999987 999998874 5999999
Q ss_pred CCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCCCC-CCCCCCCCCCChhHHHHHH
Q psy13008 260 LPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENE-PGSSIMPGKVNPTQVEALT 338 (638)
Q Consensus 260 l~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~~~-~GSSiMPqKrNP~~lE~ir 338 (638)
|+. +..|++||+++||++++++++++.++++|+|||+||++|+|+ |||||++|+.. +|||||||||||+.+|+++
T Consensus 224 ~~~-~~~n~~~~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~s~---e~g~iel~e~~~~GSSiMP~K~NP~~~E~i~ 299 (468)
T 1k7w_A 224 FAS-ISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTS---EFGFLTLSDAFSTGASLMPQKKNPDSLELIR 299 (468)
T ss_dssp CSE-ECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTST---TTCCEECCGGGCEEETTEEEEEECHHHHHHH
T ss_pred CCC-CCCChHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCCceeccCCCCCCCCCCCCCCCcHHHHHHH
Confidence 995 789999999999999999999999999999999999999985 69999999874 6999999999999999999
Q ss_pred HHHHHHhccHHHHHh--cccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHHHHHhhhhhhhHHHhc
Q psy13008 339 MVAAQVMGNHVAVTV--GGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTAL 416 (638)
Q Consensus 339 ~~a~~v~G~~~~~~~--~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~erm~~~l~~~~~lat~L 416 (638)
++|+++.|++.+++. .+.+.+++++.+.+ ...+++++..+..++. .+..+++||+||+++|+++++.+ +++|+|
T Consensus 300 ~~a~~v~g~~~~~~~~~~~~p~~~~rDl~~~--~~~l~~s~~~~~~~l~-~~~~~l~gl~vn~e~m~~~l~~~-~~at~l 375 (468)
T 1k7w_A 300 SKAGRVFGRLASILMVLKGLPSTYNKDLQED--KEAVFDVVDTLTAVLQ-VATGVISTLQISKENMEKALTPE-MLATDL 375 (468)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSSCCGGGGGH--HHHHHHHHHHHHHHHH-HHHHHHHHCEECHHHHHHTCCGG-GGHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCchHhhhhhhhh--HhHHHHHHHHHHHHHH-HHHHHhCCCEECHHHHHHHhhCC-ChHHHH
Confidence 999999999998874 55566888877654 3457777777776555 55579999999999999999988 888876
Q ss_pred C-----CCCCHHHHHHHHH----HHHHcCCCHHHHHHHcCCCCHHHHhhhcCcccccCCCCCCccCccchhhccchhhHH
Q psy13008 417 N-----PHIGYDKAAEIAK----HAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEYHPYFKPDNNETIFHTEKVI 487 (638)
Q Consensus 417 a-----~~ig~~~Ah~iv~----~A~~~g~~l~eal~~~~~Ls~eel~~llDP~~~vg~a~~~~~~~dv~~~~~~~~~~v 487 (638)
+ +++||++||++++ +|.++|++++| +..++++++ +..+++|+.+ ++|++++|
T Consensus 376 ~~~Lv~~G~~~r~ay~~v~~~~~~a~~~g~~l~e-------~~~~~~~~~-----------~~~l~~~~~~-~ldp~~~~ 436 (468)
T 1k7w_A 376 ALYLVRKGVPFRQAHTASGKAVHLAETKGITINK-------LSLEDLKSI-----------SPQFSSDVSQ-VFNFVNSV 436 (468)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHTTTCCGGG-------CCHHHHHHH-----------CTTCCGGGGG-GSCHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhCCChHH-------HHHHHHHHH-----------HHhhHHHHHH-hCCHHHHH
Confidence 4 4689999998764 56788999987 777777765 3445678888 99999999
Q ss_pred HHHhhhcCCCCCCCCCCchhhhhcc
Q psy13008 488 SQQILAAKVLPPWSRPSCPQARSII 512 (638)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (638)
+++...||++|..+.-...++++.+
T Consensus 437 ~~r~~~GG~a~~~v~~~i~~~~~~l 461 (468)
T 1k7w_A 437 EQYTALGGTAKSSVTTQIEQLRELM 461 (468)
T ss_dssp TTCCSTTSSSHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999998877777776654
No 16
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=100.00 E-value=1.5e-78 Score=664.70 Aligned_cols=397 Identities=20% Similarity=0.214 Sum_probs=346.6
Q ss_pred CCchHhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH----HHHHcCccccCCccccc
Q psy13008 23 YYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAA----DEVISGKLYEDHFPLSI 97 (638)
Q Consensus 23 ~yg~~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al----~~i~~~~~~~~~f~~~~ 97 (638)
+|+.++|+++| +|++++++|+++|+|||+||.++| ||++++++|.++| +.+..+
T Consensus 3 ry~~~~~~~~~----------sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~d~~~i~~~----------- 61 (429)
T 1c3c_A 3 RYSLSPMKDLW----------TEEAKYRRWLEVELAVTRAYEELGMIPKGVTERIRNNAKIDVELFKKI----------- 61 (429)
T ss_dssp GGCCTTHHHHT----------SHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHCCCCHHHHHHH-----------
T ss_pred CcccHHHHHHc----------ChHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhCCCCHHHHHHH-----------
Confidence 78889999999 899999999999999999999999 9999999999996 333221
Q ss_pred cccCCcccccchhhHHHHH--HHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13008 98 WQTGSGTQTNMNVNEVISN--RAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDAL 175 (638)
Q Consensus 98 ~~~~~~edi~~~vnevie~--~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~L~~~L~~L~~aL 175 (638)
.+ .+.|+|+++ .+.+.+|+ .|+ +||+|||||||++|+++|++|+.+. .|.+.|.+|+++|
T Consensus 62 ----~~----~~~~dVia~~~~l~e~~g~-~g~--------~vH~g~SsnD~~~Ta~~l~lr~~~~-~l~~~l~~l~~~L 123 (429)
T 1c3c_A 62 ----EE----KTNHDVVAFVEGIGSMIGE-DSR--------FFHYGLTSSDVLDTANSLALVEAGK-ILLESLKEFCDVL 123 (429)
T ss_dssp ----HH----HHCCHHHHHHHHHHHHHGG-GGG--------GTTTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred ----Hh----ccCCChHHHHHHHHHHcCc-ccc--------cccCCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 11 135565555 55788984 343 5667999999999999999999875 5999999999999
Q ss_pred HHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCCCCCchhhHHHHHHHH
Q psy13008 176 DKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRIS 255 (638)
Q Consensus 176 ~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~~~d~~~~~~v~~~lA 255 (638)
.++|++|+|++||||||+||||||||||||++|+++|.||++||.+++++++.+|||| |+||+.+.+ ..++++++
T Consensus 124 ~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-AvGt~~~~~----~~~~~~~a 198 (429)
T 1c3c_A 124 WEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISG-AVGNYANVP----PEVEEKAL 198 (429)
T ss_dssp HHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCC-TTSSCSSSC----HHHHHHHH
T ss_pred HHHHHHhcCCeeecCcCCCcCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch-hhcCCccCC----HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 579998875 35788999
Q ss_pred HHcCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCC--CCCCCCCCCCCCChhH
Q psy13008 256 ELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPE--NEPGSSIMPGKVNPTQ 333 (638)
Q Consensus 256 ~~LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~--~~~GSSiMPqKrNP~~ 333 (638)
+.|||+.++ .| |++.+||++++++++++.++++|+|||+||++|++ +||||+.+|. +++|||||||||||+.
T Consensus 199 ~~LGl~~~~-~~--d~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~~---~e~~El~~p~~~~q~GSSiMP~K~NP~~ 272 (429)
T 1c3c_A 199 SYLGLKPEP-VS--TQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQR---TEVLEVEEPFRKGQRGSSAMPHKKNPIT 272 (429)
T ss_dssp HHTTCEECS-SC--SSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---TTTCSEECCCCC-----CCCTTCCCCHH
T ss_pred HHcCCCCCC-CC--cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccchhccccccCCCcCCCCCCCCCcHH
Confidence 999999744 33 67889999999999999999999999999999995 7999999996 6899999999999999
Q ss_pred HHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHHHHHhhhhhhhHH
Q psy13008 334 VEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLV 413 (638)
Q Consensus 334 lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~erm~~~l~~~~~la 413 (638)
+|.++++|+++.|++.+++.+ .+++||+|.+++.+.+.+++++..+.+.++.++.+|+++|+||++||+++++.+++++
T Consensus 273 ~E~i~~~a~~v~g~~~~~~~~-~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~~ 351 (429)
T 1c3c_A 273 CERLTGLSRMMRAYVDPSLEN-IALWHERDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLV 351 (429)
T ss_dssp HHHHHHHHHHHHHTHHHHHHT-TCCSTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTTTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHCcCeeCHHHHHHHHHhccChH
Confidence 999999999999999888664 4789999998888788888888878888888899999999999999999998666654
Q ss_pred ------HhcCCC-CCHHHHHHH----HHHHHHcCCCHHHHHHHc----CCCCHHHHhhhcCcccccCCCCCC
Q psy13008 414 ------TALNPH-IGYDKAAEI----AKHAYKTGITLKEAAVKL----GYLTEQEYDQWVKPEKMLGPEYHP 470 (638)
Q Consensus 414 ------t~La~~-ig~~~Ah~i----v~~A~~~g~~l~eal~~~----~~Ls~eel~~llDP~~~vg~a~~~ 470 (638)
+.|++. +||++||++ +++|.++|++++|++.+. +.|+++|++++|||.+|+|.++.+
T Consensus 352 ~a~~la~~L~~~gig~~~A~~iv~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~a~~~ 423 (429)
T 1c3c_A 352 FSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLLEDEEVKKLVTKEELEELFDISYYLKHVDHI 423 (429)
T ss_dssp GHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSCHHHHHHTCHHHHTTCCHHHHHHTTCTHHHHTTHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHhCChhhhccCCHHHHHHhCCHHHHhhhHHHH
Confidence 566664 999999977 556788999999999887 789999999999999999987653
No 17
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=100.00 E-value=2e-78 Score=666.04 Aligned_cols=403 Identities=20% Similarity=0.195 Sum_probs=351.9
Q ss_pred CCCchHhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCccccCCcccccccc
Q psy13008 22 KYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAADEVISGKLYEDHFPLSIWQT 100 (638)
Q Consensus 22 ~~yg~~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al~~i~~~~~~~~~f~~~~~~~ 100 (638)
.+|-.++|+++| +|++++++|++||+|+|++|.++| ||++++++|.++| ++ .++.++.
T Consensus 12 ~~~~~~~~~~i~----------sd~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~------~~-----d~~~i~~ 70 (444)
T 2pfm_A 12 SRYTRPEMGAIW----------TEENKFKAWLEVEILACEAWAELGDIPKEDVKKIREHA------SF-----DIDRIYE 70 (444)
T ss_dssp CTTCCHHHHHHT----------SHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHC------CC-----CHHHHHH
T ss_pred HhcchHHHHHHc----------ChHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhC------CC-----CHHHHHH
Confidence 588889999999 899999999999999999999999 9999999999986 11 1111111
Q ss_pred CCcccccchhhHHHHH--HHHHHhc-cCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13008 101 GSGTQTNMNVNEVISN--RAIEMLG-GKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDK 177 (638)
Q Consensus 101 ~~~edi~~~vnevie~--~l~e~lG-~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~L~~~L~~L~~aL~~ 177 (638)
+.+ .+.|+|+++ .+.+++| ++.| .+||+|||||||++|+++|++|+.+. .|.+.|.+|+++|.+
T Consensus 71 ~~~----~~~~dVia~~~~l~e~~g~g~~g--------~~vH~g~SsnDv~~Ta~~L~lr~~l~-~l~~~l~~L~~~L~~ 137 (444)
T 2pfm_A 71 IEK----ETRHDVVAFTRAVSETPALGEER--------KWVHYGLTSTDVVDTALSYILKQANE-IILKDLENFVSILAN 137 (444)
T ss_dssp HHH----HHCCHHHHHHHHHHTCTTCCGGG--------GGTTTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred Hhc----cCCCCHHHHHHHHHHHcCCCccc--------ccccCCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 111 235666665 4466674 3443 46778999999999999999999875 699999999999999
Q ss_pred HHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCCCCCchhhHHHHHHHHHH
Q psy13008 178 KSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISEL 257 (638)
Q Consensus 178 lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~~~d~~~~~~v~~~lA~~ 257 (638)
+|++|+|++||||||+||||||||||||++|+++|.||++||.+++++++.+|||| |+||+.+.+ +.+++++++.
T Consensus 138 ~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-AvGt~~~~~----~~~~~~~a~~ 212 (444)
T 2pfm_A 138 KAKEHKYTIMMGRTHGVHAEPTTFGLKLGLWYEEMKRNVERFKQAANTVRVGKLSG-AVGTYANID----PFVEKYVCEN 212 (444)
T ss_dssp HHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCC-TTSSCTTSC----HHHHHHHHHH
T ss_pred HHHHhcCCeeecccCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCch-hhccCCcCC----HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 579998875 3578899999
Q ss_pred cCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCC--CCCCCCCCCCCCChhHHH
Q psy13008 258 TGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPE--NEPGSSIMPGKVNPTQVE 335 (638)
Q Consensus 258 LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~--~~~GSSiMPqKrNP~~lE 335 (638)
|||+.++ .| |++.+||++++++++++.++++|+|||+||++|++ +||||+.+|. +++|||||||||||+.+|
T Consensus 213 LGl~~~~-~~--d~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~---~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E 286 (444)
T 2pfm_A 213 LGLEAAP-IS--TQTLQRDRHAHYMSTLALIATSIEKMAVEIRGLQK---SETREVEEAFAKGQKGSSAMPHKRNPIGSE 286 (444)
T ss_dssp TTCEECS-SC--SSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---TTTCSEECCCCTTCCSCSSCTTCCCCHHHH
T ss_pred hCCCCCC-CC--cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccccccccccccCCCcCccCCcccCCHHHH
Confidence 9999754 33 67889999999999999999999999999999994 7999999996 689999999999999999
Q ss_pred HHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHHHHHhhhhhhhHH--
Q psy13008 336 ALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLV-- 413 (638)
Q Consensus 336 ~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~erm~~~l~~~~~la-- 413 (638)
.++++|+++.|++.+++.+ .+++||+|.+.+.+.+.+++++..+.+.++.++.+|+++|+||++||+++++.+++++
T Consensus 287 ~i~~~a~~v~g~~~~~~~~-~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~a 365 (444)
T 2pfm_A 287 NMTGLARVIRGYMMTAYEN-VPLWHERDISHSSAERVILPDATIALNYMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYS 365 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SCCCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHTTTTTGGGH
T ss_pred HHHHHHHHHHHHHHHHHHh-CcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcCchHH
Confidence 9999999999999888665 4789999999888788888888888888888899999999999999999998666654
Q ss_pred ----HhcCCC-CCHHHHHHH----HHHHHHcCCCHHHHHHHc----CCCCHHHHhhhcCcccccCCCCCC
Q psy13008 414 ----TALNPH-IGYDKAAEI----AKHAYKTGITLKEAAVKL----GYLTEQEYDQWVKPEKMLGPEYHP 470 (638)
Q Consensus 414 ----t~La~~-ig~~~Ah~i----v~~A~~~g~~l~eal~~~----~~Ls~eel~~llDP~~~vg~a~~~ 470 (638)
+.|++. +||++||++ +++|.++|++++|++.+. +.|+++|++++|||.+|+|.++.+
T Consensus 366 e~la~~L~~~gig~~~A~~iv~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~a~~~ 435 (444)
T 2pfm_A 366 QRVMLTLIDKGMVREEAYDIVQPKAMEAWETQVQFKELVEADERITSKLTQEEINECFNYEHHMQHVDTI 435 (444)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCHHHHHHTCHHHHTTSCHHHHHHHTCGGGGGTTHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCCCHHHHHhcchhhhccCCHHHHHHhCCHHHHHhHHHHH
Confidence 567664 999999976 567789999999999887 789999999999999999987653
No 18
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=3.8e-79 Score=673.77 Aligned_cols=436 Identities=18% Similarity=0.251 Sum_probs=375.5
Q ss_pred CCCchHhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCccccCCcccccccc
Q psy13008 22 KYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAADEVISGKLYEDHFPLSIWQT 100 (638)
Q Consensus 22 ~~yg~~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al~~i~~~~~~~~~f~~~~~~~ 100 (638)
.+|..++.+.+.+|+.+.. .|..++.+.+.+++|||+||.++| ||++++++|.++|+++.++.. +++|+++++
T Consensus 6 gr~~~~~~~~~~~f~~s~~---~d~~l~~~~i~~~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~-~~~~~~~~~-- 79 (457)
T 1tj7_A 6 GRFTQAADQRFKQFNDSLR---FDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVLLEDVR-ARPQQILES-- 79 (457)
T ss_dssp TTCSSCCCHHHHHHHCCHH---HHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-HCGGGGGGS--
T ss_pred cccccchHHHHHHHhcChh---hhHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHh-cCCcCcCCC--
Confidence 4555577888888887654 578999999999999999999999 999999999999998865433 566776532
Q ss_pred CCcccccchhhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13008 101 GSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQ 180 (638)
Q Consensus 101 ~~~edi~~~vnevie~~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~L~~~L~~L~~aL~~lA~ 180 (638)
.++|+||+ +++++.+++|+ .|+ +||+|||||||++|+++|++|+.+. .|.+.|.+|+++|.++|+
T Consensus 80 -~~~dv~~~----v~~~l~e~~g~-~g~--------~vH~g~SsnD~~~Ta~~l~lr~~l~-~l~~~l~~l~~~L~~~A~ 144 (457)
T 1tj7_A 80 -DAEDIHSW----VEGKLIDKVGQ-LGK--------KLHTGRSRNDQVATDLKLWCKDTVS-ELLTANRQLQSALVETAQ 144 (457)
T ss_dssp -CCSSHHHH----HHHHHHHHHGG-GGG--------GTTTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred -CCCcHHHH----HHHHHHHHccc-ccc--------ceecCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 68999998 67888899984 443 5667999999999999999999875 699999999999999999
Q ss_pred HhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccc-cCCCCCCchhhHHHHHHHHHHcC
Q psy13008 181 EFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAV-GTGLNTYVGFAENCTQRISELTG 259 (638)
Q Consensus 181 ~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAv-GT~~~~d~~~~~~v~~~lA~~LG 259 (638)
+|+|++||||||+||||||||||||++|+++|.||++||.+++++++.+||||||+ ||+++++++ ++++.||
T Consensus 145 ~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~~-------~la~~LG 217 (457)
T 1tj7_A 145 NNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDRE-------QLAGWLG 217 (457)
T ss_dssp TTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCTTCTTTTCCSSCCCHH-------HHHHHHT
T ss_pred HccCCeeeccccCcCCeechHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCCCCCHH-------HHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999987 999999874 5999999
Q ss_pred CCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCCCC-CCCCCCCCCCChhHHHHHH
Q psy13008 260 LPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENE-PGSSIMPGKVNPTQVEALT 338 (638)
Q Consensus 260 l~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~~~-~GSSiMPqKrNP~~lE~ir 338 (638)
|+. +..|++||+++||++++++++++.++++|+|||+||++|+|+ |||||++|+.. +|||||||||||+.+|+++
T Consensus 218 l~~-~~~n~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~---e~g~iel~e~~~~GSSiMP~K~NP~~~E~i~ 293 (457)
T 1tj7_A 218 FAS-ATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTG---EAGFVELSDRVTSGSSLMPQKKNPDALELIR 293 (457)
T ss_dssp CSS-BCSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTST---TTCCEECCGGGCBCCTTCTTCCBCHHHHHHH
T ss_pred CCC-CCCChHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCCceeccCCCCCCCCCCCCCCCcHHHHHHH
Confidence 995 789999999999999999999999999999999999999985 69999999874 7999999999999999999
Q ss_pred HHHHHHhccHHHHH--hcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHHHHHhhhhhhhHHHhc
Q psy13008 339 MVAAQVMGNHVAVT--VGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTAL 416 (638)
Q Consensus 339 ~~a~~v~G~~~~~~--~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~erm~~~l~~~~~lat~L 416 (638)
++|+++.|++.+++ ..+.+.+++++.+.+ ...+++++..+..++. .+..|++||+||+++|++++..+++++|+|
T Consensus 294 ~~a~~v~g~~~~~~~~~~~~p~~~~RDl~~~--~~~l~~s~~~~~~~l~-~~~~~l~gl~vn~~~m~~~l~~~~~~at~l 370 (457)
T 1tj7_A 294 GKCGRVQGALTGMMMTLKGLPLAYNKDMQED--KEGLFDALDTWLDCLH-MAALVLDGIQVKRPRCQEAAQQGYANATEL 370 (457)
T ss_dssp HTHHHHHHHHHHHHHHHTTCCSSCCGGGGGH--HHHHHHHHHHHHHHHH-HHHHHHTTCEECHHHHHHHHTSTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHhhcchhhH--HhHHHHHHHHHHHHHH-HHHHHHccCEECHHHHHHHHhcCCchHHHH
Confidence 99999999999886 345566788876543 2456677777766555 555699999999999999999999888876
Q ss_pred CC-----CCCHHHHHHHH----HHHHHcCCCHHHHHHHcCCCCHHHHhhhcCcccccCCCCCCccCccchhhccchhhHH
Q psy13008 417 NP-----HIGYDKAAEIA----KHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEYHPYFKPDNNETIFHTEKVI 487 (638)
Q Consensus 417 a~-----~ig~~~Ah~iv----~~A~~~g~~l~eal~~~~~Ls~eel~~llDP~~~vg~a~~~~~~~dv~~~~~~~~~~v 487 (638)
++ ++||++||+++ ++|.++|++++| +..+++..+ +..+.+|+.+ ++|++++|
T Consensus 371 ~~~Lv~~G~~~r~Ay~~v~~~~~~a~~~g~~l~e-------~~~~~~~~~-----------~~~~~~~l~~-~ldp~~~v 431 (457)
T 1tj7_A 371 ADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLED-------LPLSELQKF-----------SQVIDEDVYP-ILSLQSCL 431 (457)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCGGG-------SCHHHHTTT-----------CTTCCTTHHH-HTSHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHCcCHHH-------HHHHHHHHH-----------hhhcHHHHHH-hCCHHHHH
Confidence 53 57899999876 456788999987 666665553 3345778888 99999999
Q ss_pred HHHhhhcCCCCCCCCCCchhhhhc
Q psy13008 488 SQQILAAKVLPPWSRPSCPQARSI 511 (638)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~ 511 (638)
+++...||++|..+.-...++++.
T Consensus 432 ~~r~~~gG~a~~~v~~~i~~~~~~ 455 (457)
T 1tj7_A 432 DKRAAKGGVSPQQVAQAIAFAQAR 455 (457)
T ss_dssp HTCCSTTCCSHHHHHHHHHHHHHH
T ss_pred hccCCCCCCCHHHHHHHHHHHHHh
Confidence 999999999998877666655543
No 19
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=100.00 E-value=9.3e-75 Score=629.82 Aligned_cols=377 Identities=21% Similarity=0.253 Sum_probs=319.4
Q ss_pred cCCCCCCchHhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCccccCCcccc
Q psy13008 18 VPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAADEVISGKLYEDHFPLS 96 (638)
Q Consensus 18 ~P~~~~yg~~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al~~i~~~~~~~~~f~~~ 96 (638)
.|++.+|+.++|+++| +|++++++|+++|+|||++|.++| ||++++++|.++ ++ +++
T Consensus 4 sp~~~ry~~~~~~~i~----------sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a-------~~-----d~~ 61 (403)
T 1dof_A 4 SPFDWRYGSEEIRRLF----------TNEAIINAYLEVERALVCALEELGVAERGCCEKVNKA-------SV-----SAD 61 (403)
T ss_dssp CGGGTTSSCHHHHTTS----------SHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHC-------CC-----CTT
T ss_pred CCcccccCcHHHHHHc----------ChHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC-------CC-----CHH
Confidence 4788999999999999 899999999999999999999999 999999999877 11 222
Q ss_pred ccccCCcccccchhhHHHHH--HHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13008 97 IWQTGSGTQTNMNVNEVISN--RAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDA 174 (638)
Q Consensus 97 ~~~~~~~edi~~~vnevie~--~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~L~~~L~~L~~a 174 (638)
.++.+.++ +.|||+++ .+.+++| |+ +||+|||||||++|+++|++|+.+. .|.+.|.+|+++
T Consensus 62 ~~~~~~~~----~~~dVia~~~~l~e~~G---g~--------~vH~g~SsnD~~~Ta~~l~~r~~l~-~l~~~l~~L~~~ 125 (403)
T 1dof_A 62 EVYRLERE----TGHDILSLVLLLEQKSG---CR--------YVHYGATSNDIIDTAWALLIRRALA-AVKEKARAVGDQ 125 (403)
T ss_dssp TC------------CHHHHHHHHHHHHHC---CS--------CTTTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHhhc----cCCcHHHHHHHHHHHcC---CC--------cccCCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 23332332 46777766 4468886 43 4567999999999999999999875 599999999999
Q ss_pred HHHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCCCCCchhhHHHHHHH
Q psy13008 175 LDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRI 254 (638)
Q Consensus 175 L~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~~~d~~~~~~v~~~l 254 (638)
|.++|++|+|++||||||+||||||||||||++|+++|.|| +||.+++++++.+|||| |+||+.+..+ +++.+++++
T Consensus 126 L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~-~rL~~~~~~~~~~~lGg-AvGt~~~~~~-~~~~~~~~~ 202 (403)
T 1dof_A 126 LASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYYELYIA-CRQLALAEEFIRAKIGG-AVGTMASWGE-LGLEVRRRV 202 (403)
T ss_dssp HHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHH-HHHHHHHHHHCCBCCCC-TTSSCGGGGG-GHHHHHHHH
T ss_pred HHHHHHHhcCCeeeccccCcccccCcHHHHHHHHHHHHHHH-HHHHHHHHHhcccCccH-HHhhCccccc-ccHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999 5799988755 888999999
Q ss_pred HHHcCCCCCCCCCchhhhh-chhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCCCCCCCCCCCCCCChhH
Q psy13008 255 SELTGLPFKSAPNKFEALA-SHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQ 333 (638)
Q Consensus 255 A~~LGl~~~~~~ns~da~~-sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~~~~GSSiMPqKrNP~~ 333 (638)
++.|||+.++.+ ++. +||+++|++++++.++++|+|||+||++|++ +|||||++| + +|||||||||||+.
T Consensus 203 a~~lGl~~~~~~----~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~~---~e~~ei~lp-~-~GSSiMP~K~NP~~ 273 (403)
T 1dof_A 203 AERLGLPHHVIT----TQVAPRESFAVLASALALMAAVFERLAVEIRELSR---PEIGEVVEG-G-GGSSAMPHKANPTA 273 (403)
T ss_dssp HHHTTCCBCSSC----SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---TTTCSEESC-C----------CCCHH
T ss_pred HHHhCcCCCCCc----chhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CccCeEeCC-C-CccCCCCCCCCchH
Confidence 999999975544 467 9999999999999999999999999999994 799999999 7 99999999999999
Q ss_pred HHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHHHHHhhhhhhhHH
Q psy13008 334 VEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLV 413 (638)
Q Consensus 334 lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~erm~~~l~~~~~la 413 (638)
+|.++++|+++.|+..+++. +.+++||+|.+.+.+.|..+++...+.+.++.++.+|+++|+||++||+++++.+.+++
T Consensus 274 ~E~i~~~a~~v~g~~~~~~~-~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~ 352 (403)
T 1dof_A 274 SERIVSLARYVRALTHVAFE-NVALWHERDLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYI 352 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHhccCHH
Confidence 99999999999999988865 56689999988877666777677777777787889999999999999999998777765
Q ss_pred ------HhcCCC-CCHHHHHHHHH----HHHHcCC-CHHHHHHH
Q psy13008 414 ------TALNPH-IGYDKAAEIAK----HAYKTGI-TLKEAAVK 445 (638)
Q Consensus 414 ------t~La~~-ig~~~Ah~iv~----~A~~~g~-~l~eal~~ 445 (638)
+.|+++ +||++||++++ +|.++|+ +++|++.+
T Consensus 353 ~a~~l~~~L~~~gig~~~A~~iv~~~~~~a~~~g~~~l~e~~~~ 396 (403)
T 1dof_A 353 LTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQKWPVERLIED 396 (403)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHTTCCCCCCGGGGCCHHHHHHH
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCcCHHHHHHH
Confidence 677765 99999999976 6778998 99997765
No 20
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=100.00 E-value=9.2e-74 Score=627.33 Aligned_cols=377 Identities=18% Similarity=0.206 Sum_probs=307.9
Q ss_pred CCCchHhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCccccCCcccccccc
Q psy13008 22 KYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAADEVISGKLYEDHFPLSIWQT 100 (638)
Q Consensus 22 ~~yg~~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al~~i~~~~~~~~~f~~~~~~~ 100 (638)
.+|++++|+++| +++++++.|++||.|+++++++ | ||++++++|.++++ +..... .....
T Consensus 3 ~ry~~~~m~~~f----------s~~~~~~~~l~ve~Ala~a~~~-GlIp~~~~~~i~~~~~-~d~~~i-------~~~e~ 63 (438)
T 4eei_A 3 KRYDVAEISKIW----------ADENKYAKMLEVELAILEALED-RMVPKGTAAEIRARAQ-IRPERV-------DEIEK 63 (438)
T ss_dssp GGGCCHHHHHHH----------SHHHHHHHHHHHHHHHHHHGGG-TTSCTTHHHHHHHHCC-CCHHHH-------HHHHH
T ss_pred cccCcHHHHHHc----------ChHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHhhCC-CCHHHH-------HHHHH
Confidence 589999999999 8999999999999999999999 9 99999999988752 100000 00000
Q ss_pred CCcccccchhhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13008 101 GSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQ 180 (638)
Q Consensus 101 ~~~edi~~~vnevie~~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~L~~~L~~L~~aL~~lA~ 180 (638)
..++|++ . +++.+.+.+|++.|+ |||+|+|||||++|+++|++|+.+. .|.+.|.+|+++|.++|+
T Consensus 64 ~~~hdV~----a-~~~~l~e~~g~~~~~--------~iH~G~SsnDv~~Ta~~L~lr~~~~-~l~~~L~~l~~~L~~~A~ 129 (438)
T 4eei_A 64 VTKHDII----A-FCTSIAEQFTAETGK--------FFHFGVTSSDIIDSALSLQIRDSMS-YVIKDLEALCDSLLTKAE 129 (438)
T ss_dssp HHSCHHH----H-HHHHHHTTSCTTTTT--------TTTCSCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHH----H-HHHHHHHHcCHHhhc--------ccCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 1234432 2 566677777743344 5677999999999999999999875 699999999999999999
Q ss_pred HhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCCCCCchhhHHHHHHHHHHcCC
Q psy13008 181 EFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGL 260 (638)
Q Consensus 181 ~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~~~d~~~~~~v~~~lA~~LGl 260 (638)
+|+|++||||||+||||||||||||++|+++|.||++||.+++++++.+|||| |+||+++++++ +++++++.|||
T Consensus 130 ~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lgG-AvGT~~~~~~~----~~~~~a~~LG~ 204 (438)
T 4eei_A 130 ETKEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSG-AVGNYCILTTE----DEKKAADILGL 204 (438)
T ss_dssp HHTTCEEEEEETTEEEEEEETHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCC-TTSCCSSSCHH----HHHHHHHHHTC
T ss_pred HhhCCcccccccCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcc-HhhCcccccHH----HHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999997 57999998765 45789999999
Q ss_pred CCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcC--CCCCCCCCCCCCCChhHHHHHH
Q psy13008 261 PFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP--ENEPGSSIMPGKVNPTQVEALT 338 (638)
Q Consensus 261 ~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp--~~~~GSSiMPqKrNP~~lE~ir 338 (638)
+.. +++ +++++||++++++++++.++++|+|||+||++|++ +||||+.+| ++++|||||||||||+.+|+++
T Consensus 205 ~~~--~~~-~~v~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~~---~e~gel~~~f~~~q~GSSiMP~K~NP~~~E~i~ 278 (438)
T 4eei_A 205 PVE--EVS-TQVIPRDRIAKLISIHGLIASAIERLAVEIRHLHR---SDVFEVYEGFSKGQKGSSTMPHKKNPISTENLT 278 (438)
T ss_dssp CBC--SSC-SSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTCSEECCC------------CCCCHHHHHHH
T ss_pred CCC--Ccc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccceeccccccCCCCCCCCCCCCCcHHHHHHH
Confidence 753 443 58999999999999999999999999999999994 799999998 4699999999999999999999
Q ss_pred HHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHHHHHhhhhhhhH--HHh-
Q psy13008 339 MVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLML--VTA- 415 (638)
Q Consensus 339 ~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~erm~~~l~~~~~l--at~- 415 (638)
++|+++.|++.+. +.+.+.+|+++...+...|.+++++..+.++++.++.+++++|+||+++|+++++.++++ +++
T Consensus 279 ~~a~~v~g~~~~~-~~~~~~~~erdl~~~~~er~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~~~a~~~ 357 (438)
T 4eei_A 279 GMARMLRSHVSIA-LENCVLWHERDISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYL 357 (438)
T ss_dssp HHHHHHHHHHHHH-HHTTCCCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHCCTTHHHHHH
T ss_pred HHHHHHHHHHHHH-HhccchhcCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccCHHHHHHH
Confidence 9999999998543 556677899988777667888999999999999999999999999999999999976655 343
Q ss_pred ---cC-CCCCHHHHHHHHH----HHHHcCCCHHHHHH
Q psy13008 416 ---LN-PHIGYDKAAEIAK----HAYKTGITLKEAAV 444 (638)
Q Consensus 416 ---La-~~ig~~~Ah~iv~----~A~~~g~~l~eal~ 444 (638)
|. +++||++||++++ +|.+ |++|+|++.
T Consensus 358 a~~Lv~~g~~~~~Ah~~v~~~~~~a~~-g~~l~e~~~ 393 (438)
T 4eei_A 358 HFLVANTPFMREDCYKIVQQVAFDLKQ-GESFSKKLQ 393 (438)
T ss_dssp HHHHHHSSCCHHHHHHHHHHC--------CCHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhc-CCCHHHHHH
Confidence 33 4699999999875 5677 999999554
No 21
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=100.00 E-value=6.9e-75 Score=640.84 Aligned_cols=416 Identities=16% Similarity=0.172 Sum_probs=352.6
Q ss_pred ccCCCCCCchH--hhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CC------HHHHHHHHHHHHHHHcCc
Q psy13008 17 EVPNDKYYGAQ--TVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LD------SKIADTISKAADEVISGK 87 (638)
Q Consensus 17 ~~P~~~~yg~~--~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~------~e~a~~I~~al~~i~~~~ 87 (638)
..|.+.||+.. .++.+| +|++++++|+++|+|++++|+++| || ++++++|.++|+++..|.
T Consensus 9 ~s~~~gRy~~~~~~~~~~f----------sd~~~i~~~~~ve~A~a~ala~~g~i~~ip~i~~~~a~~I~~~~~~i~~g~ 78 (462)
T 2ptr_A 9 VSPVDGRYGDKVSALRGIF----------SEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSEED 78 (462)
T ss_dssp SSTTTTTTGGGSGGGGGTT----------SHHHHHHHHHHHHHHHHHHHHHCTTCTTSCCCCHHHHHHHHHHHHTCCHHH
T ss_pred cCcccccccCchHHHHHHC----------CcHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhccCC
Confidence 35788899987 788888 699999999999999999999997 83 799999999997664332
Q ss_pred cccCCccccccccCCcccccchhhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy13008 88 LYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCS 167 (638)
Q Consensus 88 ~~~~~f~~~~~~~~~~edi~~~vnevie~~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~L~~~ 167 (638)
+ +.++.+. +..++++++++ ..+.+.+|+ .|. +.|+++|||+|||||||++|+++|++|+.+.+.|.+.
T Consensus 79 ~-------~~~~~~~-~~~~~dv~av~-~~l~e~~g~-~g~--~~~~~~~vH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~ 146 (462)
T 2ptr_A 79 A-------ARIKTIE-RTTNHDVKAVE-YFLKEKVAE-IPE--LHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPY 146 (462)
T ss_dssp H-------HHHHHHH-HHHSCHHHHHH-HHHHHHHTT-SHH--HHTTGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred H-------HHHHhhc-cccCCCHHHHH-HHHHHHhcc-ccC--CcchhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1122211 34456776654 455788883 432 2488899999999999999999999999874259999
Q ss_pred HHHHHHHHHHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCCCCCchhh
Q psy13008 168 LQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFA 247 (638)
Q Consensus 168 L~~L~~aL~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~~~d~~~~ 247 (638)
|.+|+++|.++|++|+|++||||||+||||||||||||++|+++|.||++||.+++ ..+.+|| |+||+.+..+.|+
T Consensus 147 L~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~---~~~~~~G-AvGT~~~~~~~~~ 222 (462)
T 2ptr_A 147 WRQLIDGLKDLAVQYRDIPLLSRTAGQPATPSTIGKEMANVAYRMERQYRQLNQVE---ILGKING-AVGNYNAHIAAYP 222 (462)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCC---CEECCCC-TTSSCHHHHHHCT
T ss_pred HHHHHHHHHHHHHHccCCEeeccccCeeceechHHHHHHHHHHHHHHHHHHHHHHH---HHhccCc-hhcchhhcccccC
Confidence 99999999999999999999999999999999999999999999999999999998 3677777 6899876666666
Q ss_pred ----HHHHHHHHHHcCCCCCCCCCchh-hhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCCCCCCC
Q psy13008 248 ----ENCTQRISELTGLPFKSAPNKFE-ALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGS 322 (638)
Q Consensus 248 ----~~v~~~lA~~LGl~~~~~~ns~d-a~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~~~~GS 322 (638)
+++.+.+++.|||. .|+++ ++++||++++++++++.++++|+|||+||++|+|+|+ |+| ..|++++||
T Consensus 223 ~~~~~~v~~~~~~~LGl~----~n~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~s~~~--~~E-~~~~~~~GS 295 (462)
T 2ptr_A 223 EVDWHQFSEEFVTSLGIQ----WNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNH--FKQ-KTIAGEIGS 295 (462)
T ss_dssp TSCHHHHHHHHHHHTTCE----ECCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--EEE-CCCTTCCSC
T ss_pred cccHHHHHHHHHHHhCCC----CCchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc--hhc-cCCCCCCcC
Confidence 77899999999994 56788 5999999999999999999999999999999999763 655 345679999
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHHH
Q psy13008 323 SIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTI 402 (638)
Q Consensus 323 SiMPqKrNP~~lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~erm 402 (638)
|||||||||+.+|.++++|+++.|+..+++.+...+++|+|.+.+.+.+.+++++..+..++..+. +|++||+||++||
T Consensus 296 SiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~erd~~~~~~~~~l~~~~~~~~~~l~~~~-~~l~gl~vn~e~m 374 (462)
T 2ptr_A 296 STMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTL-KGVSKLEVNRDHL 374 (462)
T ss_dssp SSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCTHHHHHGGGHHHHHHHHHHHHHHHH-HHHHHEEECHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHH-HHHCcCEECHHHH
Confidence 999999999999999999999999998887765557899999888877889999998887766555 8999999999999
Q ss_pred HHhhhhhhhHHH-----hcCCCCCHHHHHHHHHHHHH----cCCCHHHHHHHcCCCC---HHHHhhhcCcccccCCCCC
Q psy13008 403 AKHVNDSLMLVT-----ALNPHIGYDKAAEIAKHAYK----TGITLKEAAVKLGYLT---EQEYDQWVKPEKMLGPEYH 469 (638)
Q Consensus 403 ~~~l~~~~~lat-----~La~~ig~~~Ah~iv~~A~~----~g~~l~eal~~~~~Ls---~eel~~llDP~~~vg~a~~ 469 (638)
+++++.+++++| .|++. |+++||++++++.. +|++|+|++.+.+ ++ .++++ +|||.+|+|.++.
T Consensus 375 ~~~l~~~~~~~te~~~~~l~~~-G~~~A~~iv~~~~~~~~~~~~~l~e~~~~~~-~~~~~~~~l~-~ldp~~~~~~a~~ 450 (462)
T 2ptr_A 375 LDELDHNWEVLAEPIQTVMRRY-GIEKPYEKLKELTRGKRVDAEGMKQFIDGLA-LPEEEKARLK-AMTPANYIGRAIT 450 (462)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHT-TCSSHHHHHHHC-----CCHHHHHHHHHTSS-SCHHHHHHHH-TCCGGGCCTTHHH
T ss_pred HHHHHcCCchHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHcCCCHHHHHHhcC-CCcccHHHHH-hCCHHHHhChHHH
Confidence 999999999888 55554 89999999998766 8889999988766 44 68899 9999999998764
No 22
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.4e-74 Score=635.75 Aligned_cols=416 Identities=15% Similarity=0.132 Sum_probs=329.3
Q ss_pred ccccCCCCCCchHh-hHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHcCcccc
Q psy13008 15 ELEVPNDKYYGAQT-VRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG---LDSKIADTISKAADEVISGKLYE 90 (638)
Q Consensus 15 ~~~~P~~~~yg~~~-~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G---I~~e~a~~I~~al~~i~~~~~~~ 90 (638)
.+..|++.+|+.++ |+++| +++++++.|+++|+|++++++++| ||++++++|.++++++..... .
T Consensus 6 ~~~spl~~ry~~~~~m~~~f----------s~~~~~~~~~~~e~Ala~a~~~~Gl~~i~~~~~~~I~~~l~~i~~~~~-~ 74 (478)
T 1yis_A 6 KFESVLSTRYCKNSPLVSIL----------SETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFDWPFI-R 74 (478)
T ss_dssp SCCCHHHHTTTTTCTHHHHT----------SHHHHHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHTTTCCCHHHH-H
T ss_pred cCCCCcccccCChHHHHHHc----------CchHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCHHHH-h
Confidence 48899999999999 99999 899999999999999999999999 599999999988754421111 0
Q ss_pred CCccccccccCCcccccchhhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13008 91 DHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQM 170 (638)
Q Consensus 91 ~~f~~~~~~~~~~edi~~~vnevie~~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~L~~~L~~ 170 (638)
+ + . ...++|+|.. ++. +.+.+| +.|+ +||+|+||||+++|+..|++|+.+. .|.+.|.+
T Consensus 75 ~-~----e-~~~~~DV~a~----v~~-l~e~~g-~~~~--------~iH~G~TS~Di~~ta~~L~lr~~l~-~l~~~L~~ 133 (478)
T 1yis_A 75 S-E----E-RKLKHDVMAH----NHA-FGKLCP-TAAG--------IIHLGATSCFVQDNADLIAYRDSID-HILKRFAT 133 (478)
T ss_dssp H-H----H-HHSSCHHHHH----HHH-HHHHCT-TTGG--------GTTTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred h-H----H-HhcCCcHHHH----HHH-HHHhhh-hchh--------heeCCCchhhhHHHHHHHHHHHHHH-HHHHHHHH
Confidence 0 0 0 1245675555 664 677787 3444 5667999999999999999999875 69999999
Q ss_pred HHHHHHHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCC------CCCCc
Q psy13008 171 LHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTG------LNTYV 244 (638)
Q Consensus 171 L~~aL~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~------~~~d~ 244 (638)
|+++|.++|++|+|++||||||+||||||||||+|++|+++|.||++||.++++++..+++||+ +||+ +++|+
T Consensus 134 L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~rL~~~~~~l~~lg~gg~-~GT~a~~~~~f~~d~ 212 (478)
T 1yis_A 134 VIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKGA-TGTQDSFLTLFAGDE 212 (478)
T ss_dssp HHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCTT-TSSCHHHHHHTTTCH
T ss_pred HHHHHHHHHHHcCCCeeecccCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-hccchhhhcccCcch
Confidence 9999999999999999999999999999999999999999999999999999999999999886 6999 77777
Q ss_pred hhhHHHHHHHHHHcCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCC--CCCCC
Q psy13008 245 GFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPE--NEPGS 322 (638)
Q Consensus 245 ~~~~~v~~~lA~~LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~--~~~GS 322 (638)
....++.+++++.|||+. +..|+. ++++||+++|++++++.++++|+|||+||++|+| +|||.+|. +++||
T Consensus 213 ~~~~~v~~~~a~~LG~~~-~~~~s~-~~~~rd~~~e~~~~l~~~a~~L~kia~Di~ll~s-----~~el~~p~~~~q~GS 285 (478)
T 1yis_A 213 SKVEALDELVTKKANFSN-RFLITG-QTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQA-----FGELLEPFEKDQIGS 285 (478)
T ss_dssp HHHHHHHHHHHHHTTCSC-BCSSCS-SSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTSEECC--------
T ss_pred hhHHHHHHHHHHHhCcCC-CCCccc-cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhheeccccCCCCcc
Confidence 667788899999999995 445654 7999999999999999999999999999999995 89999994 58999
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHHH
Q psy13008 323 SIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTI 402 (638)
Q Consensus 323 SiMPqKrNP~~lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~erm 402 (638)
|||||||||+.+|+++++|++++|++.+++.....+++|+|...+.+.+..+++++.+.++++.++.+|++||+||+++|
T Consensus 286 SiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~er~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm 365 (478)
T 1yis_A 286 SAMPYKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDDSAGRRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNV 365 (478)
T ss_dssp -----CCCCHHHHHHHHHHHHHHTSHHHHHHHHHTCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHH
T ss_pred ccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHhccCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHH
Confidence 99999999999999999999999999888766666679999888877888999999999999999999999999999999
Q ss_pred HHhhhhhhhH-HHh-----cC-CCCCHHHHHHHHHHH--------HHcCCCHHHHHHHcCC-CCHHHHhhhc-CcccccC
Q psy13008 403 AKHVNDSLML-VTA-----LN-PHIGYDKAAEIAKHA--------YKTGITLKEAAVKLGY-LTEQEYDQWV-KPEKMLG 465 (638)
Q Consensus 403 ~~~l~~~~~l-at~-----La-~~ig~~~Ah~iv~~A--------~~~g~~l~eal~~~~~-Ls~eel~~ll-DP~~~vg 465 (638)
+++++.++++ +|+ |. .+++|++||+++++. .++|+++.++..+.+. ++++|++++| ||.+|+|
T Consensus 366 ~~~l~~~~~~~~te~v~~~l~~~G~~~~~Ah~~v~~~a~~~~~~v~~~g~~~~~l~~~~~~~l~~~el~~~l~dp~~~~g 445 (478)
T 1yis_A 366 KKIVEDEIAFLGLEKAMMMLTEEGVDRQQAHAVIRKTALEAKQLQATQKVDIRQTMADPFFDSVRDRVVGLVNNPINFTG 445 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---------------------------------CCCTTTTSTTTHHHHHHHHHCGGGGST
T ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCCCCCCHHHHHHHHhCHHHHcC
Confidence 9999988766 554 33 368899999987431 2577775443333333 6899999999 9999999
Q ss_pred CCCCC
Q psy13008 466 PEYHP 470 (638)
Q Consensus 466 ~a~~~ 470 (638)
.+++.
T Consensus 446 ~a~~~ 450 (478)
T 1yis_A 446 RCVSQ 450 (478)
T ss_dssp THHHH
T ss_pred cHHHH
Confidence 87753
No 23
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=100.00 E-value=2e-73 Score=634.28 Aligned_cols=420 Identities=18% Similarity=0.139 Sum_probs=349.2
Q ss_pred ccCCccccCCCCCCchHhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHcCcc
Q psy13008 11 DSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG--LDSKIADTISKAADEVISGKL 88 (638)
Q Consensus 11 d~~g~~~~P~~~~yg~~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G--I~~e~a~~I~~al~~i~~~~~ 88 (638)
+...++..|++.+|+.++|+++| +++++++.|+++|+|+|+|++++| ||++++++|.++++++.....
T Consensus 30 ~~~~~~~spl~~ry~~~~m~~~f----------S~~~~~~~~~~~e~Ala~a~~~~Gl~i~~e~~~~I~~~l~~i~~~~~ 99 (503)
T 2j91_A 30 GSPDSYRSPLASRYASPEMCFVF----------SDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIREMKSNLENIDFKMA 99 (503)
T ss_dssp CCTTSCCCHHHHTTSCHHHHHHT----------SHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTSSCCCHHHH
T ss_pred cCcccccCCcccccCCHHHHHHh----------ChhHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCHHHH
Confidence 34778999999999999999999 899999999999999999999999 899999999887644311000
Q ss_pred ccCCccccccccCCcccccchhhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13008 89 YEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSL 168 (638)
Q Consensus 89 ~~~~f~~~~~~~~~~edi~~~vnevie~~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~L~~~L 168 (638)
.+ + . ....+|+|.. ++. +.+.+| +.|+ +||+|+||||+++|+..|++|+.+. .|.+.|
T Consensus 100 -~~-~----e-~~~~hDV~a~----v~~-l~e~~g-~~~~--------~iH~G~TS~Di~dta~~L~lr~al~-~l~~~L 157 (503)
T 2j91_A 100 -AE-E----E-KRLRHDVMAH----VHT-FGHCCP-KAAG--------IIHLGATSCYVGDNTDLIILRNALD-LLLPKL 157 (503)
T ss_dssp -HH-H----H-HHHSCHHHHH----HHH-HHHHCT-TTGG--------GTTTTCCTHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred -hh-h----h-hhcCCcHHHH----HHH-HHHHhc-cccc--------cccCCCCHhhHHHHHHHHHHHHHHH-HHHHHH
Confidence 00 0 0 1134565444 663 677787 3443 5677999999999999999999875 699999
Q ss_pred HHHHHHHHHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCC------CCC
Q psy13008 169 QMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTG------LNT 242 (638)
Q Consensus 169 ~~L~~aL~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~------~~~ 242 (638)
.+|+++|.++|++|++++||||||+||||||||||+|++|+++|.||++||.+++++++.+++||+ +||+ +++
T Consensus 158 ~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~RL~~~~~~l~~lg~gG~-~GT~a~~~~~f~~ 236 (503)
T 2j91_A 158 ARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGT-TGTQASFLQLFEG 236 (503)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCCT-TSSCHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCcEeeccccCccceecchHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-ccchhhhccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999886 6998 677
Q ss_pred CchhhHHHHHHHHHHcCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCC--CCC
Q psy13008 243 YVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPE--NEP 320 (638)
Q Consensus 243 d~~~~~~v~~~lA~~LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~--~~~ 320 (638)
|+...+++.+++++.|||+. +.+|+. ++++||++++++++++.++++|+|||+||++|+| +|||.+|. +++
T Consensus 237 D~~~~~~v~~~~a~~LGl~~-~~~~s~-~~~~rd~~~e~~~~la~la~~L~kia~Dirll~s-----~~ei~ep~~~~q~ 309 (503)
T 2j91_A 237 DDHKVEQLDKMVTEKAGFKR-AFIITG-QTYTRKVDIEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQI 309 (503)
T ss_dssp CHHHHHHHHHHHHHHTTCSC-BCSCCS-SSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTSEECCC-----
T ss_pred chHHHHHHHHHHHHHhCCCC-CCCccc-ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cceeeccccCCCC
Confidence 77667788899999999995 445554 7999999999999999999999999999999995 99999994 589
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChH
Q psy13008 321 GSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNED 400 (638)
Q Consensus 321 GSSiMPqKrNP~~lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~e 400 (638)
|||||||||||+.+|+++++|++++|++.+++......++|+|...+.+.+..+++++.+.++++.++.+|+++|+||++
T Consensus 310 GSSiMP~K~NPv~~E~i~~~a~~v~g~~~~~~~~~~~~~~erd~~~s~~~~~~l~~~~~~~~~~l~~~~~~l~gL~vn~e 389 (503)
T 2j91_A 310 GSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPK 389 (503)
T ss_dssp ------CCCCCHHHHHHHHHHHHHHHTTHHHHHHHHTCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHH
T ss_pred CCCCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchHHHHhhHHHHHHHHHHHHHHHHHHHcCCEECHH
Confidence 99999999999999999999999999998777666666899998888878889999999999999999999999999999
Q ss_pred HHHHhhhhhhhH-HHh-----cC-CCCCHHHHHHHHHH-------HHH-c--CCCHHHHHHHcCC--CCHHHHhhhcCcc
Q psy13008 401 TIAKHVNDSLML-VTA-----LN-PHIGYDKAAEIAKH-------AYK-T--GITLKEAAVKLGY--LTEQEYDQWVKPE 461 (638)
Q Consensus 401 rm~~~l~~~~~l-at~-----La-~~ig~~~Ah~iv~~-------A~~-~--g~~l~eal~~~~~--Ls~eel~~llDP~ 461 (638)
+|+++++.++++ +|+ |. .+++|++||+++++ .++ . +.+|.|.+...+. ++++|++++|||.
T Consensus 390 rm~~~l~~s~~~~ate~v~~~lv~~G~~~~~Ah~~v~~~a~~~g~~V~~~~~~~~l~e~l~~~~~~~l~~eel~~~ldp~ 469 (503)
T 2j91_A 390 VIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPS 469 (503)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHCGGGHHHHTTHHHHTCGG
T ss_pred HHHHHHHhccChHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHhcCcccCCCHHHHHHhcCHH
Confidence 999999988766 443 43 46999999998742 222 1 2467777776554 5688999999999
Q ss_pred cccCCCCCC
Q psy13008 462 KMLGPEYHP 470 (638)
Q Consensus 462 ~~vg~a~~~ 470 (638)
+|+|.+++.
T Consensus 470 ~~~g~a~~~ 478 (503)
T 2j91_A 470 SFTGRASQQ 478 (503)
T ss_dssp GGSTTHHHH
T ss_pred HhCCcHHHH
Confidence 999988764
No 24
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=100.00 E-value=1.7e-69 Score=580.05 Aligned_cols=349 Identities=21% Similarity=0.217 Sum_probs=286.9
Q ss_pred ccccCCCC-CCchHhhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCccccCC
Q psy13008 15 ELEVPNDK-YYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAADEVISGKLYEDH 92 (638)
Q Consensus 15 ~~~~P~~~-~yg~~~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~~e~a~~I~~al~~i~~~~~~~~~ 92 (638)
.+..|.-. ||++++|+++| ++++++++|++||+|+|+||+++| ||++++++|.++|+++..
T Consensus 5 ~~~~~l~~~~~~~~~m~~~f----------s~~~~i~~~~~ve~A~a~a~~~~G~i~~~~a~~I~~~~~~i~~------- 67 (359)
T 2fel_A 5 PFEHPFLSGLFGDSEIIELF----------SAKADIDAMIRFETALAQAEAEASIFADDEAEAIVSGLSEFAA------- 67 (359)
T ss_dssp TTSCTTTHHHHCCHHHHGGG----------SHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCC-------
T ss_pred cccccccccccCCHHHHHHc----------CcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhccc-------
Confidence 34556554 68999999999 899999999999999999999999 999999999999976521
Q ss_pred ccccccccCCcccccchhhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13008 93 FPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLH 172 (638)
Q Consensus 93 f~~~~~~~~~~edi~~~vnevie~~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~L~~~L~~L~ 172 (638)
+++.++.+.+++.| ++++++.+ +.+.+|++. ++|||+|+|||||+||+++|++|+.+. .|.+.|.+|+
T Consensus 68 -~~~~~~~~~~~~~~-~~~~~~~~-l~~~~g~~~--------~~~vH~G~SsnDv~~Ta~~l~lr~~l~-~l~~~L~~l~ 135 (359)
T 2fel_A 68 -DMSALRHGVAKDGV-VVPELIRQ-MRAAVAGQA--------ADKVHFGATSQDVIDTSLMLRLKMAAE-IIATRLGHLI 135 (359)
T ss_dssp -CHHHHHHHHHHHSS-SHHHHHHH-HHTTSCGGG--------GGGTTTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred -cHHHHHhhccccCC-cHHHHHHH-HHHHcCccc--------cchhcCCCCHhhHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 22222232334434 56666544 455565332 467888999999999999999999875 6999999999
Q ss_pred HHHHHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCCCCCchhhHHHHH
Q psy13008 173 DALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQ 252 (638)
Q Consensus 173 ~aL~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~~~d~~~~~~v~~ 252 (638)
++|.++|++|+|++||||||+||||||||||+|++|+++|.||++||.+++++++.+||||+ +||+. ..+++++.+++
T Consensus 136 ~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGga-vGT~~-~~~~~~~~~~~ 213 (359)
T 2fel_A 136 DTLGDLASRDGHKPLTGYTRMQAAIGITVADRAAGWIAPLERHLLRLETFAQNGFALQFGGA-AGTLE-KLGDNAGAVRA 213 (359)
T ss_dssp HHHHHHHHHHTTSEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSBCCCCCT-TSSCT-TTGGGHHHHHH
T ss_pred HHHHHHHHHhcCcEeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHH-hccCc-cCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999995 79964 45678889999
Q ss_pred HHHHHcCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCCCCCCCCCCCCCCChh
Q psy13008 253 RISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSSIMPGKVNPT 332 (638)
Q Consensus 253 ~lA~~LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~~~~GSSiMPqKrNP~ 332 (638)
++++.|||+.++ +|+++||+++|++++++.++++|+|||+||++|+| +| ||+.+|. ++|||+|||||||+
T Consensus 214 ~~a~~LG~~~~~-----~~~~~RD~~~e~~~~l~~~a~~L~kia~Dirll~s---~e-~Ei~~~~-~~GSS~MP~K~NP~ 283 (359)
T 2fel_A 214 DLAKRLGLADRP-----QWHNQRDGIAEFANLLSLVTGTLGKFGQDIALMAE---IG-SEIRLSG-GGGSSAMPHKQNPV 283 (359)
T ss_dssp HHHHHHTCBCCC-----CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HC-TTEEEC-------------CCH
T ss_pred HHHHHhCcCCCc-----hHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CC-CeecCCC-CCCCccCCcccCCH
Confidence 999999999743 47899999999999999999999999999999997 68 9999996 59999999999999
Q ss_pred HHHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHHHHHh
Q psy13008 333 QVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKH 405 (638)
Q Consensus 333 ~lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~erm~~~ 405 (638)
.+|+|+++++++.|++.+++. ....|+|++...+...|..+++++.+++.++..+.+++++|+||+++|..+
T Consensus 284 ~~E~i~~~a~~v~~~~~~~~~-~~~~~~er~~~~~~~e~~~lp~~~~~~~~~L~~~~~v~~~l~v~~~~m~~~ 355 (359)
T 2fel_A 284 NAETLVTLARFNAVQISALHQ-SLVQEQERSGAGWMLEWLTLPQMVTATGTSLLVAERLAAQIDRLGADESHH 355 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHhCcc
Confidence 999999999999999988764 445677877655555677889999999999999999999999999999754
No 25
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=100.00 E-value=3.9e-69 Score=594.53 Aligned_cols=415 Identities=17% Similarity=0.163 Sum_probs=324.7
Q ss_pred ccCCCCCCchH--hhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHCC-CC------HHHHHHHHHHHHHHHcCc
Q psy13008 17 EVPNDKYYGAQ--TVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LD------SKIADTISKAADEVISGK 87 (638)
Q Consensus 17 ~~P~~~~yg~~--~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~G-I~------~e~a~~I~~al~~i~~~~ 87 (638)
..|.+.||+.. +|+.+| +|++++++|+++|.||++||++.| || ++++++|.++++++..++
T Consensus 12 ~s~~~gRy~~~~~~~~~~f----------sd~~~~~~~l~ve~a~~~ala~~~gi~~ip~i~~~~~~~i~~~~~~~~~~d 81 (459)
T 3bhg_A 12 ISPIDGRYVNKTRALSPYF----------SEFALTYYRLMVEIKWFESLAANDTIPEVPALDNKARKFLSDLISNFNESE 81 (459)
T ss_dssp SSTTTTTTHHHHGGGTTTS----------SHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCCHHHHHHHHHHHHTCCHHH
T ss_pred cCcccccccCChHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhcccc
Confidence 45899999987 799999 799999999999999999999995 73 799999999986542211
Q ss_pred cccCCccc-cccccCCcccccchhhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy13008 88 LYEDHFPL-SIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLC 166 (638)
Q Consensus 88 ~~~~~f~~-~~~~~~~~edi~~~vnevie~~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~L~~ 166 (638)
+ .. ........+|+ ++ ++..+.+.+|. .|.. -..+.|||+|||||||++|+++|++|+.+.+.|.+
T Consensus 82 ~-----~~~~~~e~~~~~Dv-~a----~e~~l~e~~g~-~~~~--~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~ 148 (459)
T 3bhg_A 82 A-----EKIKEFEKQTNHDV-KA----VEYYLQDKFQE-NEQL--KSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQP 148 (459)
T ss_dssp H-----HHHHHHTTTCSSHH-HH----HHHHHHHHHTT-STTG--GGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred H-----HHHHHHHHhcCCCh-HH----HHHHHHHHhcc-cccC--chhhhhhcCCCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 00111245665 55 88888899983 3210 02356788899999999999999999987535999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCCCCCc-h
Q psy13008 167 SLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYV-G 245 (638)
Q Consensus 167 ~L~~L~~aL~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~~~d~-~ 245 (638)
.|.+|+++|.++|++|+|++||||||+||||||||||||++|+++|.||++||.+++ .++.||||+|| ++... .
T Consensus 149 ~L~~l~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~----~~~~~~GAvGT-~~a~~~~ 223 (459)
T 3bhg_A 149 TIAEIMGSITLLGKQHADVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVL----IPAKFNGAVGN-YNAHVAA 223 (459)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCC----CEECCCCSSSS-CHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCEeeccccCccceechHHHHHHHHHHHHHHHHHHHHHHH----Hhhcccccccc-ccccccc
Confidence 999999999999999999999999999999999999999999999999999999988 45666667899 44321 2
Q ss_pred hh----HHHHHHHHHHcCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCCCCCC
Q psy13008 246 FA----ENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPG 321 (638)
Q Consensus 246 ~~----~~v~~~lA~~LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~~~~G 321 (638)
|+ +.+.+++++.|||...+.++ ++++||+++|++++++.++++|+|||+||++|+|+ |+.+...|++++|
T Consensus 224 ~~~~~~~~~~~~~~~~LGl~~~~~~~---~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~---~~~~e~~~~~~~G 297 (459)
T 3bhg_A 224 YPEVDWRKHCANFVTSLGLSFNAYTT---QIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISL---GYFKQKTIAEEVG 297 (459)
T ss_dssp CTTSCHHHHHHHHHHHTTCEECSSCS---SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TSEEECC------
T ss_pred cCcccHHHHHHHHHHHhCCCCCcccc---chhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---cceehccCCCCCC
Confidence 22 45778888899997543332 68999999999999999999999999999999983 6644334457999
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHH
Q psy13008 322 SSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDT 401 (638)
Q Consensus 322 SSiMPqKrNP~~lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~er 401 (638)
||||||||||+.+|.++++++.+.|....++.....++|+++...+...+.+++.+.....+ +..+.+++++|+||+++
T Consensus 298 SSiMP~K~NP~~~e~~~g~~~l~~~~~~~~~~~l~~~~~~rdl~~s~~~r~l~~~~~~~~~~-l~~~~~~l~gl~vn~e~ 376 (459)
T 3bhg_A 298 SSTMPHKVNPIDFENAEGNLGLSNALFIHFANKLTQSRMQRDLSDSTVLRNLGVAFSYSLIA-YHSVAKGNDKLQINKSA 376 (459)
T ss_dssp CCSSCCCCCTHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCTHHHHHHTTHHHHHHHHHHH-HHHHHHHHTTEEECHHH
T ss_pred CCCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhhHHHHHHHHHHH-HHHHHHHHCcCEECHHH
Confidence 99999999999999999999999998776655444567777765544345556666655543 44557899999999999
Q ss_pred HHHhhhhhhhHH-----HhcCCCCCHHHHHHHHHHHHHcCC-----CHHHHHHHcCCCC---HHHHhhhcCcccccCCCC
Q psy13008 402 IAKHVNDSLMLV-----TALNPHIGYDKAAEIAKHAYKTGI-----TLKEAAVKLGYLT---EQEYDQWVKPEKMLGPEY 468 (638)
Q Consensus 402 m~~~l~~~~~la-----t~La~~ig~~~Ah~iv~~A~~~g~-----~l~eal~~~~~Ls---~eel~~llDP~~~vg~a~ 468 (638)
|+++++.+++++ +.|++. |+++||++++++.. |. +|+|.+.+.+ ++ .++|+ +|||.+|+|.++
T Consensus 377 m~~~l~~~~~~~te~~~~~L~~~-G~~~A~~iv~~~~~-~~~~~~~~l~~~l~~l~-~~~~~~~~l~-~~dp~~y~g~a~ 452 (459)
T 3bhg_A 377 LQKDLSENWEVLAEAIQTVMRRY-NEPNAYEQLKELTR-GQMIDAENLKKFIKTLS-IPEEAKAELM-KLTPETYTGLAT 452 (459)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHT-TCTTHHHHHHHHHT-TSCCCHHHHHHHHHTSC-SCHHHHHHHH-HCCGGGCCTTHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHh-ChHHHHHHHHHHHh-hcccccccHHHHHHhcC-CCchhHHHHH-hCCHHHHhCcHH
Confidence 999999999887 455554 99999999999876 44 3777776644 43 46888 999999999876
Q ss_pred CC
Q psy13008 469 HP 470 (638)
Q Consensus 469 ~~ 470 (638)
.+
T Consensus 453 ~~ 454 (459)
T 3bhg_A 453 QL 454 (459)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 26
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=100.00 E-value=9.8e-70 Score=600.18 Aligned_cols=421 Identities=16% Similarity=0.166 Sum_probs=322.6
Q ss_pred ccCCCCCCchH--hhHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHHHcCccccCC
Q psy13008 17 EVPNDKYYGAQ--TVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF-G-LDSKIADTISKAADEVISGKLYEDH 92 (638)
Q Consensus 17 ~~P~~~~yg~~--~~rai~~f~~~~~~~~~~~~~i~a~l~ve~A~A~al~e~-G-I~~e~a~~I~~al~~i~~~~~~~~~ 92 (638)
..|.+.||+.. +|+++| +|++++++|+++|+||++||++. | ||++++++|.. +.++.+ ++..+.
T Consensus 8 ~s~~~gRy~~~~~~~~~~~----------sd~~~~~~~i~ve~A~~~ala~~~gii~~~~~~~i~~-l~~~~~-~~~~~d 75 (465)
T 2qga_B 8 ISPIDGRYKKACGELSAFF----------SEHALIKHRIIVEVRWLLFLNEEELFFEKVTDHSVEV-LNQIAT-NITDSD 75 (465)
T ss_dssp SSTTTTTTHHHHGGGGGTS----------SHHHHHHHHHHHHHHHHHHHHHHTSSSCCCCHHHHHH-HHHHHH-CCCHHH
T ss_pred cCcccccccCCcHHHHHHh----------CHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHHH-hhcccc
Confidence 45889999987 788898 79999999999999999999999 9 99999999975 333322 120111
Q ss_pred cc-ccccccCCcccccchhhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13008 93 FP-LSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQML 171 (638)
Q Consensus 93 f~-~~~~~~~~~edi~~~vnevie~~l~e~lG~~~g~~l~vH~~~~Vh~GrSrnDivdTal~L~lr~~l~~~L~~~L~~L 171 (638)
+. +........+|+ ++ ++..+.+.+|...++.+ -..+.|||+|+|||||++|+++|++|+.+.+.|.+.|.+|
T Consensus 76 ~~~i~~~e~~~~hDV-~a----~e~~l~e~~g~~~~~~~-~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l 149 (465)
T 2qga_B 76 IARVKAIEEETNHDV-KA----VEYFVKEKLKNSKREDL-LKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKI 149 (465)
T ss_dssp HHHHHHHHHHHSCHH-HH----HHHHHHHHHHTSCCHHH-HHHGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHhhccCCCh-HH----HHHHHHHHhcccccccc-hhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 100111135676 66 88888899972100000 0013467789999999999999999998753699999999
Q ss_pred HHHHHHHHHHhcccccccccccccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCccccccCCCCCCc-hhh---
Q psy13008 172 HDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYV-GFA--- 247 (638)
Q Consensus 172 ~~aL~~lA~~~~dt~m~GrTHlQ~AqPiT~G~~la~~a~~L~Rd~eRL~~~~~rl~~~pLGGaAvGT~~~~d~-~~~--- 247 (638)
+++|.++|++|+|++||||||+||||||||||||++|+++|.||++||.+++ .+++||||+|| ++... .|+
T Consensus 150 ~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~----~~~~~~GAvGT-~~a~~~~~p~~d 224 (465)
T 2qga_B 150 MLKLKDLAVEYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVK----VCAKFNGAVGN-FNAHKVASKDTD 224 (465)
T ss_dssp HHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHSC----CEECCCCTTSS-CHHHHHHCTTCC
T ss_pred HHHHHHHHHHccCcEeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHH----HhccccchhcC-ccccccccCccc
Confidence 9999999999999999999999999999999999999999999999999987 57777778899 44221 111
Q ss_pred -HHHHHHHHHH-cCCCCCCCCCchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEcCCCCCCCCCC
Q psy13008 248 -ENCTQRISEL-TGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSSIM 325 (638)
Q Consensus 248 -~~v~~~lA~~-LGl~~~~~~ns~da~~sRD~~~e~~~~la~la~~LsRiA~DL~llsS~pr~E~gev~lp~~~~GSSiM 325 (638)
..+.+.+++. |||+.++.+ +++++||++++++++++.++++|+|||+||++|+|+ |+.+...|++++|||||
T Consensus 225 ~~~~~~~~~~~~LGl~~~~~~---~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~---~~~~e~~~~~~~GSSiM 298 (465)
T 2qga_B 225 WVNTIGLFLKKHFNLTYSIYC---TQIQDHDYICELCDGLARANGTLIDLCVDIWLYISN---NLLKLKVKEKEVGSSTM 298 (465)
T ss_dssp HHHHHHHHHHHHHCCEECCCC---SSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TSEEEC-------CCSC
T ss_pred HHHHHHHHHHHHhCCCCCCCc---cchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---cceeeeCCCCCCCCCCC
Confidence 2345555555 999875433 589999999999999999999999999999999983 66444455679999999
Q ss_pred CCCCChhHHHHHHHHHHHHhccHHHHHhcccCccccccccchhHHhhHHHHHHHHHHHHHHHHHHhhhccccChHHHHHh
Q psy13008 326 PGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKH 405 (638)
Q Consensus 326 PqKrNP~~lE~ir~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~i~~~ll~s~~~l~~~~l~~~~~vl~~L~Vn~erm~~~ 405 (638)
||||||+.+|+++++++.+.|....++....+++|+++...+...+.++..+.....+ +..+.+++++|+||+++|+++
T Consensus 299 P~K~NP~~~e~~~g~~~~~~~~~~~~~~~l~~~~~erdl~~s~~~r~l~~~~~~~~~~-l~~~~~~l~~l~vn~~~m~~~ 377 (465)
T 2qga_B 299 PHKVNPIDFENAEGNLHIANAFFKLFSSKLPTSRLQRDLSDSTVLRNIGSSLAYCLIA-YKSVLKGLNKIDIDRRNLEEE 377 (465)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTBCTHHHHHHTTHHHHHHHHHHH-HHHHHHHHHHEEECHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhHHHHHHHHHHH-HHHHHHHHccCEECHHHHHHH
Confidence 9999999999999999999998877765555667888766554455555555555543 345568999999999999999
Q ss_pred hhhhhhHH-----HhcCCCCCHHHHHHHHHHHHHcCC-----CHHHHHHHcC-CCCH---HHHhhhcCcccccCCCCCC
Q psy13008 406 VNDSLMLV-----TALNPHIGYDKAAEIAKHAYKTGI-----TLKEAAVKLG-YLTE---QEYDQWVKPEKMLGPEYHP 470 (638)
Q Consensus 406 l~~~~~la-----t~La~~ig~~~Ah~iv~~A~~~g~-----~l~eal~~~~-~Ls~---eel~~llDP~~~vg~a~~~ 470 (638)
++.+++++ +.|.+. |+++||++++++.. |. +|.+.+.... .+++ ++|+ +|||.+|+|.+++.
T Consensus 378 l~~~~~~~ae~v~~~L~~~-G~~~A~~iv~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~ldp~~y~G~a~~~ 453 (465)
T 2qga_B 378 LNQNWSTLAEPIQIVMKRH-NYVDAYEELKQFTR-GKVIDQKIMQEFIKTKCAFLPQDVVDQLL-ELTPATYTGYADYL 453 (465)
T ss_dssp HHTCGGGGHHHHHHHHHHT-TCSCHHHHHHHHHT-TSCCCHHHHHHHHHHHSTTSCHHHHHHHH-HCCGGGCCTTHHHH
T ss_pred HHcCCChHHHHHHHHHHHh-ChHHHHHHHHHHHh-hhhhccCCHHHHHHhchhcCCcchHHHHH-hcCHHHhCCcHHHH
Confidence 99998875 566665 99999999998864 43 3555555543 4787 8998 99999999988753
No 27
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=29.72 E-value=28 Score=25.69 Aligned_cols=23 Identities=17% Similarity=0.444 Sum_probs=13.6
Q ss_pred chHHHHHHHHHHHHHHHhhhhhh
Q psy13008 587 CLFLVIIGFFLVVIFRRLKLWKK 609 (638)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~ 609 (638)
.+.+||+|+.+++.+||-+.=+|
T Consensus 21 vll~vi~~l~~~~~~RRR~~~~k 43 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKRRQQKIR 43 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHHHHhheehhhhhcc
Confidence 44566666666666676554333
No 28
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.75 E-value=1.2e+02 Score=24.87 Aligned_cols=25 Identities=16% Similarity=0.297 Sum_probs=15.6
Q ss_pred cchHHHHHHHHHHHHHHHhhhhhhh
Q psy13008 586 SCLFLVIIGFFLVVIFRRLKLWKKK 610 (638)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (638)
.+..+|+||+.++.+++-+.-++.|
T Consensus 17 vi~gilliGllllliwk~~~~i~Dr 41 (79)
T 2knc_B 17 VMGAILLIGLAALLIWKLLITIHDR 41 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677787777777755555433
No 29
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=22.57 E-value=53 Score=25.42 Aligned_cols=21 Identities=29% Similarity=0.416 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHH-HHcCcc
Q psy13008 68 LDSKIADTISKAADE-VISGKL 88 (638)
Q Consensus 68 I~~e~a~~I~~al~~-i~~~~~ 88 (638)
++.+.+++|.+++++ |..|.|
T Consensus 5 lt~eq~~aILkaLdeaIe~GPW 26 (57)
T 3fxd_A 5 LSDEQKETILKALNDAIEKGPW 26 (57)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCT
T ss_pred hhHHHHHHHHHHHHHHHHcCCc
Confidence 788999999999998 455776
Done!