RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13008
(638 letters)
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics
consortium, alterna initiation, anti-oncogene, cell
cycle, disease mutation; 1.95A {Homo sapiens}
Length = 490
Score = 964 bits (2494), Expect = 0.0
Identities = 347/467 (74%), Positives = 396/467 (84%), Gaps = 1/467 (0%)
Query: 1 MGKDGVRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAA 60
++ RIE D+FGEL+VPNDKYYGAQTVRS +NF IGG +ERMP +I A GILK+AAA
Sbjct: 25 ASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAA 84
Query: 61 QVNKGFGLDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIE 120
+VN+ +GLD KIA+ I KAADEV GKL DHFPL +WQTGSGTQTNMNVNEVISNRAIE
Sbjct: 85 EVNQDYGLDPKIANAIMKAADEVAEGKLN-DHFPLVVWQTGSGTQTNMNVNEVISNRAIE 143
Query: 121 MLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQ 180
MLGG+LGSK PVHPNDHVNK QSSNDTFPTAMHIA A+E+H LL LQ LHDALD KS+
Sbjct: 144 MLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSK 203
Query: 181 EFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGL 240
EF IIKIGRTHTQDA PLTLGQEFSGYV Q+KY + R+K +PR+Y+LA GGTAVGTGL
Sbjct: 204 EFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAVGTGL 263
Query: 241 NTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIR 300
NT +GFAE +++ LTGLPF +APNKFEALA+HDALVE+SGA+NT A SLMKIANDIR
Sbjct: 264 NTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIR 323
Query: 301 FLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHF 360
FLGSGPRSGLGEL LPENEPGSSIMPGKVNPTQ EA+TMVAAQVMGNHVAVTVGGSNGHF
Sbjct: 324 FLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHF 383
Query: 361 ELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHI 420
ELNVFKP+++ NVL S RLL D + SFT CV GI N + I K +N+SLMLVTALNPHI
Sbjct: 384 ELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHI 443
Query: 421 GYDKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPE 467
GYDKAA+IAK A+K G TLKE A++LGYLT +++D+WVKP+ MLGP+
Sbjct: 444 GYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGPK 490
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase,
subunit active site; 2.60A {Saccharomyces cerevisiae}
SCOP: a.127.1.1
Length = 488
Score = 952 bits (2463), Expect = 0.0
Identities = 300/462 (64%), Positives = 362/462 (78%), Gaps = 3/462 (0%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
R E D+FGE+ VP DKY+GAQT RS NF IGG ERMP ++ A G+LKK+AA VN+
Sbjct: 29 RTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESL 88
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
G LD KI+ I +AADEV SGKL +DHFPL ++QTGSGTQ+NMN NEVISNRAIE+LGGK
Sbjct: 89 GGLDPKISKAIQQAADEVASGKL-DDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGK 147
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
+GSK VHPN+H N+ QSSNDTFPT MHIA +L+I N L+ L L +AL+ KS+EF +I
Sbjct: 148 IGSK-QVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHI 206
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
+KIGRTH QDATPLTLGQEFSGYV Q++ GI+RV +L L LA GGTAVGTGLNT G
Sbjct: 207 VKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPG 266
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
F ++IS+ TGL F++APN+FEALA+HDA+VE SGALNT+A SL KIA DIR+LGSG
Sbjct: 267 FDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSG 326
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
PR G EL LPENEPGSSIMPGKVNPTQ EALT V QVMGN+ A+T GS G FELNVF
Sbjct: 327 PRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVF 386
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
KP++++N+L SIRL+ D SF CV GI NE I + + SLMLVTALNP IGYD A
Sbjct: 387 KPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAA 446
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPE 467
+++AK+A+K GITLKE+A++LG LTE+E+D+WV PE MLGP+
Sbjct: 447 SKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHMLGPK 488
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle
enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP:
a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A*
2fus_A* 3tv2_A
Length = 467
Score = 951 bits (2462), Expect = 0.0
Identities = 268/461 (58%), Positives = 354/461 (76%), Gaps = 4/461 (0%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
R EKDS G ++VP DK +GAQT RSL +F I E +MP ++I A+ + K+AAA+VN+
Sbjct: 5 RSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTE--KMPTSLIHALALTKRAAAKVNEDL 62
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
G L + A I +AADEV++G+ +D FPL+IWQTGSGTQ+NMN+NEV++NRA E+LGG
Sbjct: 63 GLLSEEKASAIRQAADEVLAGQH-DDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGV 121
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
G + VHPND VNK QSSND FPTAMH+A L + +L+ L+ L L++KS+ F +I
Sbjct: 122 RGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADI 181
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
+KIGRT+ QDATPLTLGQE SG+V +++ ++ ++ +LP + +LA+GGTAVGTGLNT+
Sbjct: 182 VKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPE 241
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
+A ++ +T PF +APNKFEALA+ DALV+ GAL +A SLMKIAND+R+L SG
Sbjct: 242 YARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASG 301
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
PR G+GE+ +PENEPGSSIMPGKVNPTQ EALTM+ QVMGN VA+ +GG++G+FELNVF
Sbjct: 302 PRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVF 361
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
+P+++ N L+S+RLLAD ESF C GI PN + I + +N+SLMLVTALN HIGYDKA
Sbjct: 362 RPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKA 421
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGP 466
AEIAK A+K G+TLK AA+ LGYL+E E+D WV+PE+M+G
Sbjct: 422 AEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVGS 462
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken
structural genomics/proteomics in RSGI, structural
genomics, lyase; 1.80A {Thermus thermophilus} SCOP:
a.127.1.1
Length = 466
Score = 950 bits (2457), Expect = 0.0
Identities = 262/462 (56%), Positives = 329/462 (71%), Gaps = 3/462 (0%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
RIE+D+ GE+ VP DKY+GAQT RSL NF IG + RMP II A G+LKKAAA+ N
Sbjct: 4 RIERDTMGEVRVPADKYWGAQTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLEL 63
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
G L +IA I +AA+EV+ GK +DHFPL ++QTGSGTQTNMNVNEVI+NRA E+LG
Sbjct: 64 GELPEEIAKAIIQAAEEVVQGKW-DDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKP 122
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
LGSK HPNDHVN+ QSSNDTFPTAM++AVAL +H RL +++ L K+Q F I
Sbjct: 123 LGSK-YAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQI 181
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
+K+GRTH DA P+TLGQE + Q+K + VK+ LY LAIGGTAVGTGLN +
Sbjct: 182 VKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHPR 241
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
F E + ++E TGLPF+ A N+F ALA+HD LV V GA+ T+A +LMKI ND+R+L SG
Sbjct: 242 FGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASG 301
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
P +G+GE+ +P NEPGSSIMPGKVNPTQVEALTMV +V GN V GS G+F+LNV+
Sbjct: 302 PYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVY 361
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
KP++ + L SI LLAD SF GI PN + I +++ + ML TALN IGYDKA
Sbjct: 362 KPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDKA 421
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPE 467
AEI K A K TLK+AA++LGYLTE+E+D+ V P ++ P
Sbjct: 422 AEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKPH 463
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics,
ssgcid, lyase, tricarboxylic acid cycle; 2.40A
{Rickettsia prowazekii}
Length = 482
Score = 947 bits (2451), Expect = 0.0
Identities = 297/459 (64%), Positives = 358/459 (77%), Gaps = 4/459 (0%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
RIE DSFGE+++ Y+GAQT RSL NF I + +MP+ +I A+ ILKK AAQVN F
Sbjct: 26 RIESDSFGEIQIEEKFYWGAQTQRSLNNFKISKQ--KMPKILIRALAILKKCAAQVNYEF 83
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
G L+ KIA +I KA D +++G+ ED+FPL +WQTGSGTQTNMN+NEVI++ A E L GK
Sbjct: 84 GDLEYKIATSIDKAIDRILAGEF-EDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGK 142
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
G K PVHPNDHVNK QSSND+FPTAMHIA L +L+ +L L L KS+++ I
Sbjct: 143 KGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWDKI 202
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
IKIGRTH QDATPLTL QEFSGY+TQI+Y +ER++D L ++Y LA GGTAVGTG+N+ +G
Sbjct: 203 IKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAVGTGINSKIG 262
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
F Q+++E T PFK+APNKFE+LA+HDALVE SG LNT+AVSLMKIANDIR LGSG
Sbjct: 263 FDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSG 322
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
PR GLGEL LPENEPGSSIMPGKVNPTQVEALTMV QVMGNHV VT+ GSNGH ELNVF
Sbjct: 323 PRCGLGELHLPENEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELNVF 382
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
KP+I+ N+L+SI LL+D+ SF T CV G+ PN I + SLMLVT LNPHIGYD A
Sbjct: 383 KPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSLMLVTVLNPHIGYDNA 442
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKML 464
A+IAK A+K GITLKEAA KL +L+E+E+D+ V PEKM+
Sbjct: 443 AKIAKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPEKMI 481
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid
cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB:
4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Length = 495
Score = 912 bits (2359), Expect = 0.0
Identities = 223/469 (47%), Positives = 296/469 (63%), Gaps = 16/469 (3%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
RIE D+ GE+ VP + AQT R++ NFPI G + I A+G+LK A AQVN
Sbjct: 33 RIEHDTMGEVRVPAKALWRAQTQRAVENFPISGR--GLERTQIRALGLLKGACAQVNSDL 90
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
G L + AD I AA E+ G+ +D FP+ ++QTGSGT +NMN NEVI++ A +
Sbjct: 91 GLLAPEKADAIIAAAAEIADGQH-DDQFPIDVFQTGSGTSSNMNTNEVIASIAAK----- 144
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
+HPND VN QSSNDTFPTA HIA L+ +LQ LHDAL K+ ++ +
Sbjct: 145 --GGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTV 202
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
+K GRTH DA P+TLGQEFSGY QI+ GIERV+ LPRL +LAIGGTAVGTGLN
Sbjct: 203 VKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGLNAPDD 262
Query: 246 FAENCTQRISELTGLP-FKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGS 304
F + TGL ++A N FEA A+ D LVE SGAL T+AVSL KIANDIR++GS
Sbjct: 263 FGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGS 322
Query: 305 GPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNV 364
GP +GL E++LP+ +PGSSIMPGKVNP EA+T VAAQV+GN A+ GG+NG FELNV
Sbjct: 323 GPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNV 382
Query: 365 FKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDK 424
+ P++ N+L S +LL + + F +C+ G+ N + + + S +VT LN IGY++
Sbjct: 383 YIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEE 442
Query: 425 AAEIAKHAYKTGITLKEAAVKLGY----LTEQEYDQWVKPEKMLGPEYH 469
AA +AK A K T+++ + G L+ ++ D+ + M E
Sbjct: 443 AAAVAKQALKERKTIRQTVIDRGLIGDRLSIEDLDRRLDVLAMAKAEQL 491
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB:
1j3u_A 3r6v_A 3r6y_A
Length = 468
Score = 891 bits (2306), Expect = 0.0
Identities = 208/464 (44%), Positives = 299/464 (64%), Gaps = 5/464 (1%)
Query: 6 VRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKG 65
VRIEKD GE E+P D YYG QT+R+ NFPI G R+ +I ++GI+KK+AA N
Sbjct: 5 VRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGY--RIHPELIKSLGIVKKSAALANME 62
Query: 66 FG-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGG 124
G LD ++ I KAADEVI GK D F + Q G+GT NMN NEVI+NRA+E++G
Sbjct: 63 VGLLDKEVGQYIVKAADEVIEGKWN-DQFIVDPIQGGAGTSINMNANEVIANRALELMGE 121
Query: 125 KLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQN 184
+ G+ + PN HVN QS+ND FPTA HIA L + N+L+ + + + KK+ EF
Sbjct: 122 EKGNYSKISPNSHVNMSQSTNDAFPTATHIA-VLSLLNQLIETTKYMQQEFMKKADEFAG 180
Query: 185 IIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYV 244
+IK+GRTH QDA P+ LGQEF Y I IER+ +T LY + +G TAVGTGLN
Sbjct: 181 VIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADP 240
Query: 245 GFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGS 304
+ T+ +++ +G P +SA + +A + D EVS AL +++ KIAND+R + S
Sbjct: 241 EYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMAS 300
Query: 305 GPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNV 364
GPR+GL E+ LP +PGSSIMPGKVNP E + VA QV GN + +T G FELNV
Sbjct: 301 GPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNV 360
Query: 365 FKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDK 424
+P++ N+++SI ++ + +SFT C+ GI NE+ + ++V S+ ++TA+NPH+GY+
Sbjct: 361 MEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYET 420
Query: 425 AAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEY 468
AA++A+ AY TG +++E +K G LTE++ ++ + P +M+ P
Sbjct: 421 AAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHPGI 464
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase;
HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Length = 478
Score = 874 bits (2260), Expect = 0.0
Identities = 182/476 (38%), Positives = 279/476 (58%), Gaps = 2/476 (0%)
Query: 4 DGVRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVN 63
+ +RIE+D G EVP D YYG T+R++ NF I + M ++KKAAA N
Sbjct: 3 NNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMAN 62
Query: 64 KGFG-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEML 122
K + +A+ I A DEV++ D FP+ ++Q G+GT NMN NEV++N +E++
Sbjct: 63 KELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELM 122
Query: 123 GGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEF 182
G + G ++PNDHVNKCQS+ND +PT IAV + +L+ ++ L + ++K+ EF
Sbjct: 123 GHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLI-KLVDAINQLREGFERKAVEF 181
Query: 183 QNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNT 242
Q+I+K+GRT QDA P+TLGQEF + +K ++ ++ T L ++ +G TA+GTGLNT
Sbjct: 182 QDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLNT 241
Query: 243 YVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFL 302
++ ++++E+TG P A + EA + A V V GAL +AV + KI ND+R L
Sbjct: 242 PKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLL 301
Query: 303 GSGPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFEL 362
SGPR+GL E+ LPE + GSSIMP KVNP E + V +V+GN VT+ G +L
Sbjct: 302 SSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQL 361
Query: 363 NVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGY 422
NV +P+I + S+ +L + + KC+ GI N++ +V +S+ +VT LNP IG+
Sbjct: 362 NVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGH 421
Query: 423 DKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEYHPYFKPDNNE 478
+ K +TG +++E ++ G LTE E D + ++ P Y D +E
Sbjct: 422 HNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPAYKAKRYTDESE 477
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis,
epididymiti mastitis, dehydration of fumarate to malate,
KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Length = 478
Score = 869 bits (2247), Expect = 0.0
Identities = 190/458 (41%), Positives = 273/458 (59%), Gaps = 4/458 (0%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
R E+DS GE ++P D Y+G QT+R++ NF + + A++ A+ ++KKAAA N
Sbjct: 24 RREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKL 83
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
L I A D++I G L + F + ++Q G+GT +NMN NEVI+NRA+E LG
Sbjct: 84 RQLPEPKYAAIVAACDDIIDGLLM-EQFVVDVFQGGAGTSSNMNANEVIANRALEHLGRP 142
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
G +HPND VN QS+ND +PTA+ +A+ L + ++ +L L A + K +EF +
Sbjct: 143 RGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQN-QVQTALHRLIAAFEAKGREFATV 201
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
IKIGRT QDA P+TLGQEF + ++ R+++ ++ +GGTA+GT +N
Sbjct: 202 IKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAIGTRINASHA 261
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
+AE +S+++G+ K+ N EA A V SG L +AV L KIAND+R L SG
Sbjct: 262 YAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSG 321
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
PRSGLGE++LP +PGSSIMPGKVNP E++ V QV+GN + VT+ +G +LN F
Sbjct: 322 PRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAF 381
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
+PLIV N+L S+RLL + +CV GI N + +S+ L TAL P +GY +A
Sbjct: 382 EPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARA 441
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKM 463
AEIAK A +G T+ E A+ G L + P +M
Sbjct: 442 AEIAKQALASGQTVMEVAISKG-LDASALTIMLDPLRM 478
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic
degradation; 2.30A {Acinetobacter calcoaceticus} SCOP:
a.127.1.1
Length = 454
Score = 122 bits (309), Expect = 4e-30
Identities = 71/350 (20%), Positives = 133/350 (38%), Gaps = 51/350 (14%)
Query: 144 SNDTFPTAMHIAV--ALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTL 201
S D TA + AL I + +Q ++ ++Q +++ + +GRT Q A P+TL
Sbjct: 110 SQDILDTACILQCRDALAI---VQNQVQQCYETALSQAQTYRHQVMMGRTWLQQALPITL 166
Query: 202 GQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLP 261
G + + + + K ++R+ R+ +GG AVG+ + + ++ L
Sbjct: 167 GHKLARWASAFKRDLDRINAIKARVLVAQLGG-AVGSLAS-LQDQGSIVVEAYAKQLKLG 224
Query: 262 FKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP--ENE 319
+ D +VE++ L + ++ K+A D + ++ + E+ P +
Sbjct: 225 QTACTW----HGERDRIVEIASVLGIITGNVGKMARDWSLMM---QTEIAEVFEPTAKGR 277
Query: 320 PGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVG--------GSNGHFELNVFKPLIVS 371
GSS MP K NP ++ A +V ++ H E
Sbjct: 278 GGSSTMPHKRNPVAAASVLAAANRVPALMSSIYQSMVQEHERSLGAWHAEW--------- 328
Query: 372 NVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDS--------LMLVTALNPHIG-- 421
L I L T + G+ N + + +++ + +M+ AL PH+G
Sbjct: 329 LSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMAEAVMM--ALAPHMGRL 386
Query: 422 --YDKAAEIAKHAYKTGITLKEAAVK----LGYLTEQEYDQWVKPEKMLG 465
+ K A LK+ + Y + D+ KPE LG
Sbjct: 387 NAHHVVEAACKTAVAEQKHLKDIISQVDEVKQYFNPSQLDEIFKPESYLG 436
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiat YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 121 bits (306), Expect = 1e-29
Identities = 70/350 (20%), Positives = 127/350 (36%), Gaps = 51/350 (14%)
Query: 144 SNDTFPTAMHIAV--ALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTL 201
+ D TA + + L + + ++ + AL ++ ++ GRTH Q A P+T
Sbjct: 104 TQDIMDTATVLQIRDGLAL---ISRRIESVRKALAALARNHRDTPMAGRTHLQHALPVTF 160
Query: 202 GQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLP 261
G + + +++ R+++ PR+ + G A GT + + + ++ L
Sbjct: 161 GYKAAVWLSAFDRHAARLEEISPRVLVVEFSG-ASGTLAS-LGTRGLDVQRELARELNLG 218
Query: 262 FKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP--ENE 319
S ++ DA+ E L V+ SL K+A DI + + LGE+ P +
Sbjct: 219 VPSITW----HSARDAVAETVQFLALVSGSLGKLAMDISIMM---TTELGEVAEPFVRHR 271
Query: 320 PGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVG--------GSNGHFELNVFKPLIVS 371
SS MP K NP E + A V + ++ H E
Sbjct: 272 GASSTMPQKQNPVSCELILAGARIVRNHATSMLDAMIHDFERATGPWHLE---------W 322
Query: 372 NVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDS--------LMLVTALNPHIG-- 421
+ + +A + G+ D + ++++ S +M+ AL PH G
Sbjct: 323 SAVPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDHSRGLIVAEAVMM--ALAPHTGRK 380
Query: 422 --YDKAAEIAKHAYKTGITLKEAAVK----LGYLTEQEYDQWVKPEKMLG 465
+D + A + L E L E+ P LG
Sbjct: 381 EAHDIVYLGCRRAVEDKTGLFEVLRTMPEVAKPLGEEALRDLTDPRNYLG 430
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase
class II cycloisomerase, molecular EV isomerase; HET:
CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Length = 450
Score = 121 bits (305), Expect = 1e-29
Identities = 77/350 (22%), Positives = 128/350 (36%), Gaps = 51/350 (14%)
Query: 144 SNDTFPTAMHIAV--ALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTL 201
S D T + + + AL++ + L L D L +++ + + +GRT Q ATP+TL
Sbjct: 106 SQDAMDTGLVLQLRDALDL---IEADLGKLADTLSQQALKHADTPLVGRTWLQHATPVTL 162
Query: 202 GQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLP 261
G + +G + + +R+++ PRL L GG A G+ A + ++E L
Sbjct: 163 GMKLAGVLGALTRHRQRLQELRPRLLVLQFGG-ASGSLAA-LGSKAMPVAEALAEQLKLT 220
Query: 262 FKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP--ENE 319
P D LVE + L VA SL K DI L ++ GE+ P +
Sbjct: 221 LPEQPWH----TQRDRLVEFASVLGLVAGSLGKFGRDISLLM---QTEAGEVFEPSAPGK 273
Query: 320 PGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVG--------GSNGHFELNVFKPLIVS 371
GSS MP K NP L A +V G + H E
Sbjct: 274 GGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFAAMPQEHERSLGLWHAEW--------- 324
Query: 372 NVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDS--------LMLVTALNPHIG-- 421
L I L G+ + + ++++ + + + L +G
Sbjct: 325 ETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSI--VLAQRLGRD 382
Query: 422 --YDKAAEIAKHAYKTGITLKEAAVK----LGYLTEQEYDQWVKPEKMLG 465
+ + + A L+ L+ +E D+ + P LG
Sbjct: 383 RAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGEELDRLLDPAHYLG 432
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 105 bits (264), Expect = 2e-24
Identities = 78/351 (22%), Positives = 133/351 (37%), Gaps = 54/351 (15%)
Query: 144 SNDTFPTAMHIAV--ALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTL 201
S D TA+ + A EI +L L+ L K++E + I +GRTH A P T
Sbjct: 105 STDVVDTALSYILKQANEI---ILKDLENFVSILANKAKEHKYTIMMGRTHGVHAEPTTF 161
Query: 202 GQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLP 261
G + + ++K +ER K + + G AVG TY + + E GL
Sbjct: 162 GLKLGLWYEEMKRNVERFKQAANTVRVGKLSG-AVG----TYANIDPFVEKYVCENLGLE 216
Query: 262 FKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP--ENE 319
+ D L +A S+ K+A +IR L +S E++ + +
Sbjct: 217 AAPISTQ---TLQRDRHAHYMSTLALIATSIEKMAVEIRGLQ---KSETREVEEAFAKGQ 270
Query: 320 PGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF----KPLIVSNVLR 375
GSS MP K NP E +T +A + G + +E NV + + S+ R
Sbjct: 271 KGSSAMPHKRNPIGSENMTGLARVIRGYMMTA--------YE-NVPLWHERDISHSSAER 321
Query: 376 SIR----LLADTTESFTTKCVTGILPNEDTIAKHVNDS--------LMLVTALNPH-IG- 421
I + + + V + + + +++ + +ML L +
Sbjct: 322 VILPDATIALNYMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQRVML--TLIDKGMVR 379
Query: 422 ---YDKAAEIAKHAYKTGITLKEAAVK----LGYLTEQEYDQWVKPEKMLG 465
YD A A++T + KE LT++E ++ E +
Sbjct: 380 EEAYDIVQPKAMEAWETQVQFKELVEADERITSKLTQEEINECFNYEHHMQ 430
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 101 bits (255), Expect = 2e-23
Identities = 74/351 (21%), Positives = 137/351 (39%), Gaps = 54/351 (15%)
Query: 144 SNDTFPTAMHIAV--ALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTL 201
S+D TA +A+ A +I LL SL+ D L + + +++ IGRTH A P +
Sbjct: 93 SSDVLDTANSLALVEAGKI---LLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSF 149
Query: 202 GQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLP 261
G + G+ +++K ++R++ + + I G AVG Y ++ GL
Sbjct: 150 GLKVLGWYSEMKRNVQRLERAIEEVSYGKISG-AVG----NYANVPPEVEEKALSYLGLK 204
Query: 262 FKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP--ENE 319
+ + + D L VA + +IA +IR L R+ + E++ P + +
Sbjct: 205 PEPVSTQ---VVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQ---RTEVLEVEEPFRKGQ 258
Query: 320 PGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF----KPLIVSNVLR 375
GSS MP K NP E LT ++ + E N+ + + S+V R
Sbjct: 259 RGSSAMPHKKNPITCERLTGLSRMMRAYVDPS--------LE-NIALWHERDISHSSVER 309
Query: 376 SIR----LLADTTESFTTKCVTGILPNEDTIAKHVNDS--------LMLVTALNPH-IG- 421
+ T V + NE+ + K+++ + ++L L +
Sbjct: 310 YVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLL--KLIEKGLTR 367
Query: 422 ---YDKAAEIAKHAYKTGITLKEAAVK----LGYLTEQEYDQWVKPEKMLG 465
YD A + + E ++ +T++E ++ L
Sbjct: 368 KEAYDIVQRNALKTWNSEKHFLEYLLEDEEVKKLVTKEELEELFDISYYLK 418
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium
tumefaciens} PDB: 2fen_A
Length = 359
Score = 99.6 bits (249), Expect = 8e-23
Identities = 49/219 (22%), Positives = 79/219 (36%), Gaps = 35/219 (15%)
Query: 144 SNDTFPTAMHIAV--ALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTL 201
S D T++ + + A EI + L L D L + + G T Q A +T+
Sbjct: 108 SQDVIDTSLMLRLKMAAEI---IATRLGHLIDTLGDLASRDGHKPLTGYTRMQAAIGITV 164
Query: 202 GQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLP 261
+G++ ++ + R++ + L GG A GT L A +++ GL
Sbjct: 165 ADRAAGWIAPLERHLLRLETFAQNGFALQFGG-AAGT-LEKLGDNAGAVRADLAKRLGLA 222
Query: 262 FKSAPNKFEALASH---DALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN 318
+ H D + E + L+ V +L K DI + +
Sbjct: 223 --------DRPQWHNQRDGIAEFANLLSLVTGTLGKFGQDIALMA---EI--------GS 263
Query: 319 EP------GSSIMPGKVNPTQVEALTMVAAQVMGNHVAV 351
E GSS MP K NP E L +A A+
Sbjct: 264 EIRLSGGGGSSAMPHKQNPVNAETLVTLARFNAVQISAL 302
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: AMP;
1.92A {Francisella tularensis subsp}
Length = 438
Score = 94.3 bits (235), Expect = 1e-20
Identities = 52/215 (24%), Positives = 100/215 (46%), Gaps = 26/215 (12%)
Query: 144 SNDTFPTAMHIAV--ALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTL 201
S+D +A+ + + ++ ++ L+ L D+L K++E + II +GR+H A P++
Sbjct: 94 SSDIIDSALSLQIRDSMSY---VIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSF 150
Query: 202 GQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLP 261
GQ+F G + K ++ +KD + G AVG Y ++ +++ GL
Sbjct: 151 GQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSG-AVG----NYCILTTEDEKKAADILGL- 204
Query: 262 FKSAPNKFEALASH----DALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP- 316
E +++ D + ++ +A ++ ++A +IR L RS + E+
Sbjct: 205 ------PVEEVSTQVIPRDRIAKLISIHGLIASAIERLAVEIRHLH---RSDVFEVYEGF 255
Query: 317 -ENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVA 350
+ + GSS MP K NP E LT +A + +
Sbjct: 256 SKGQKGSSTMPHKKNPISTENLTGMARMLRSHVSI 290
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 92.3 bits (230), Expect = 3e-20
Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 144 SNDTFPTAMHIAV--ALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTL 201
SND TA + + AL + + + D L +++++ + +GRTH Q A P+TL
Sbjct: 96 SNDIIDTAWALLIRRALAA---VKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEPITL 152
Query: 202 GQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLP 261
G +F+ Y ++ ++ + IGG AVGT + E +R++E GLP
Sbjct: 153 GFKFANYYYELYIACRQLAL-AEEFIRAKIGG-AVGTMASWGELGLE-VRRRVAERLGLP 209
Query: 262 FKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPG 321
+ +A ++ ++ AL +A ++A +IR L R +GE+ E G
Sbjct: 210 HHVITTQ---VAPRESFAVLASALALMAAVFERLAVEIRELS---RPEIGEVV--EGGGG 261
Query: 322 SSIMPGKVNPTQVEALTMVAAQVMGNHVA 350
SS MP K NPT E + +A V
Sbjct: 262 SSAMPHKANPTASERIVSLARYVRALTHV 290
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 77.7 bits (192), Expect = 3e-15
Identities = 45/222 (20%), Positives = 85/222 (38%), Gaps = 31/222 (13%)
Query: 144 SNDTFPTAMHIAV--ALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTL 201
S A IA +++ +L + D L S + + ++ +GRTH Q A+ +T+
Sbjct: 108 SCFVQDNADLIAYRDSIDH---ILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTV 164
Query: 202 GQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLP 261
G+ + ++ + + + ++ I G A GT + F ++ L L
Sbjct: 165 GKRGVLWAQELLMAFQSLSEFRDKMRFRGIKG-ATGTQDSFLTLF-AGDESKVEALDELV 222
Query: 262 FKSAPNKFEALAS-------HDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELK 314
K A L + D+ ++ +L+ + + K+ DIR L
Sbjct: 223 TKKANFSNRFLITGQTYSRQQDS--QLVFSLSLLGAAAKKVCTDIR--------VLQAFG 272
Query: 315 LPENEP------GSSIMPGKVNPTQVEALTMVAAQVMGNHVA 350
EP GSS MP K NP + E ++ +++
Sbjct: 273 ELL-EPFEKDQIGSSAMPYKKNPMKSERCCALSRKLINAPQE 313
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
PDB: 2vd6_A*
Length = 503
Score = 75.4 bits (186), Expect = 1e-14
Identities = 49/223 (21%), Positives = 85/223 (38%), Gaps = 33/223 (14%)
Query: 144 SNDTFPTAMHIAV--ALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTL 201
S I + AL++ LL L + L ++E ++ +G TH Q A T+
Sbjct: 134 SCYVGDNTDLIILRNALDL---LLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTV 190
Query: 202 GQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCT------QRIS 255
G+ ++ + ++ +K L + G GT + F + + ++
Sbjct: 191 GKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKG-TTGTQASFLQLFEGDDHKVEQLDKMVT 249
Query: 256 ELTGLPFKSA------PNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSG 309
E G K + EV L ++ S+ KI DIR L +
Sbjct: 250 EKAGFKRAFIITGQTYTRKVDI--------EVLSVLASLGASVHKICTDIRLL-----AN 296
Query: 310 LGELKLP--ENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVA 350
L E++ P + + GSS MP K NP + E +A +M +
Sbjct: 297 LKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMD 339
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G
consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB:
2hvg_A
Length = 465
Score = 73.0 bits (179), Expect = 8e-14
Identities = 55/289 (19%), Positives = 110/289 (38%), Gaps = 28/289 (9%)
Query: 168 LQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPR-L 226
L+ + L + E+ ++ + RTH Q A+ T G+E + + +I + + ++
Sbjct: 146 LEKIMLKLKDLAVEYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVKVCAK 205
Query: 227 YQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALN 286
+ A+G + + + + L + + + HD + E+ L
Sbjct: 206 FNGAVGNFNAHKVASKDTDWVNTIGLFLKKHFNLTYSIYCTQ---IQDHDYICELCDGLA 262
Query: 287 TVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSSIMPGKVNPT---QVEALTMVAAQ 343
+L+ + DI S + L +LK+ E E GSS MP KVNP E +A
Sbjct: 263 RANGTLIDLCVDIWLYIS---NNLLKLKVKEKEVGSSTMPHKVNPIDFENAEGNLHIANA 319
Query: 344 VMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRL-LADTTESF--TTKCVTGILPNED 400
+ + S + + L S VLR+I LA ++ K + I +
Sbjct: 320 FF-KLFSSKLPTS--RLQ----RDLSDSTVLRNIGSSLAYCLIAYKSVLKGLNKIDIDRR 372
Query: 401 TIAKHVNDS-------LMLV-TALNPHIGYDKAAEIAKHAYKTGITLKE 441
+ + +N + + +V N Y++ + + ++E
Sbjct: 373 NLEEELNQNWSTLAEPIQIVMKRHNYVDAYEELKQFTRGKVIDQKIMQE 421
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG; 1.90A
{Legionella pneumophila subsp}
Length = 459
Score = 70.8 bits (173), Expect = 4e-13
Identities = 57/294 (19%), Positives = 109/294 (37%), Gaps = 27/294 (9%)
Query: 168 LQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLY 227
+ + ++ ++ ++ + RTH Q ATP T+G+E +V ++K +++ + L
Sbjct: 150 IAEIMGSITLLGKQHADVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVLIPAK 209
Query: 228 QLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNT 287
G GL F + + + HD + EVS +
Sbjct: 210 FNGAVGNYNAHVAAYPEVDWRKHCANFVTSLGLSFNAYTTQ---IEPHDGIAEVSQIMVR 266
Query: 288 VAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSSIMPGKVNPT---QVEALTMVAAQV 344
+ L+ DI S G + K E GSS MP KVNP E ++ +
Sbjct: 267 INNILLDYTQDIWSYIS---LGYFKQKTIAEEVGSSTMPHKVNPIDFENAEGNLGLSNAL 323
Query: 345 MGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRL-LADTTESF--TTKCVTGILPNEDT 401
H A + S + + L S VLR++ + + + ++ K + N+
Sbjct: 324 F-IHFANKLTQS--RMQ----RDLSDSTVLRNLGVAFSYSLIAYHSVAKGNDKLQINKSA 376
Query: 402 IAKHVNDS-------LMLV-TALNPHIGYDKAAEIAKHAYKTGITLKEAAVKLG 447
+ K ++++ + V N Y++ E+ + LK+ L
Sbjct: 377 LQKDLSENWEVLAEAIQTVMRRYNEPNAYEQLKELTRGQMIDAENLKKFIKTLS 430
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A
{Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Length = 462
Score = 66.5 bits (162), Expect = 1e-11
Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 8/193 (4%)
Query: 144 SNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQ 203
S D + + + +L + L D L + ++++I + RT Q ATP T+G+
Sbjct: 123 SEDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPATPSTIGK 182
Query: 204 EFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPFK 263
E + + Y +ER L ++ L AVG + E + SE
Sbjct: 183 EMA----NVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLG 238
Query: 264 SAPNKFEA-LASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGS 322
N + + HD + E+ + L+ D+ + + K E GS
Sbjct: 239 IQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIA---LNHFKQKTIAGEIGS 295
Query: 323 SIMPGKVNPTQVE 335
S MP KVNP E
Sbjct: 296 STMPHKVNPIDFE 308
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.1 bits (155), Expect = 1e-10
Identities = 92/596 (15%), Positives = 168/596 (28%), Gaps = 196/596 (32%)
Query: 172 HDALDKKSQE----FQNIIKIGR---------THTQDATPLTLGQEFSGYVTQIKYGIER 218
H +D ++ E +++I+ + QD L +E ++ K +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 219 VK---DTLPRLYQLAIGGTAVGTGLNTYVGF-----AENCTQR-------ISELTGL--- 260
TL Q + V L F Q I + L
Sbjct: 64 TLRLFWTL-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 261 --PFK----SAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELK 314
F S + L AL+E+ A N V + + GSG ++ + L
Sbjct: 123 NQVFAKYNVSRLQPYLKL--RQALLELRPAKN-VLIDGVL--------GSG-KTWVA-LD 169
Query: 315 LPENEPGSSIMPGKV---------NPTQV-EALTMVAAQVMGNHVAVTVGGSNGHFELNV 364
+ + M K+ +P V E L + Q+ N + + SN ++
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 365 FKP---------------LIVSNVLRSIRLLADTTESFTTKC---VTGILPNEDTIAKHV 406
+ L++ NV ++ + +F C +T T K V
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNV-QNAKAW----NAFNLSCKILLT-------TRFKQV 277
Query: 407 NDSLMLVTALNPHI-----GY--DKAAEI-AKHAYKTGITLKEAAVK--------LGYLT 450
D L T + + D+ + K+ L + +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 451 EQEYDQW-----VKPEKM----------LGP-EYHPYFKPDNNETIFHTEKVISQQILAA 494
W V +K+ L P EY F ++F I +L+
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD---RLSVFPPSAHIPTILLS- 393
Query: 495 KVLPPW--SRPSCPQ-------ARSIIRGRPSTLRYSARTQFVRSSQPARPKRDLDAKMT 545
++ W S S++ +P S + ++ + L +
Sbjct: 394 -LI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 546 TVPPSY-FTSEFPSEAPLAN------LSH-GNSSYPVHSQNSLSSMKNSCLFLVIIGFFL 597
Y F S+ + SH G + H L ++++
Sbjct: 451 D---HYNIPKTFDSDDLIPPYLDQYFYSHIG---H--H----LKNIEHPERMT------- 491
Query: 598 VVIFRRLKL---WKKKTSAIQKKKLQQKVVNTS--------------DLPETKQYI 636
+FR + L + L+QK+ + S L K YI
Sbjct: 492 --LFRMVFLDFRF-----------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 3e-07
Identities = 78/439 (17%), Positives = 123/439 (28%), Gaps = 171/439 (38%)
Query: 159 EIHNRLLCSLQMLHDALDKKSQE-----FQNIIKIGRTHTQDATPLTL-----GQ----- 203
+IH L L +D K++E I R + + G
Sbjct: 100 DIHA-LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 204 EFSGYVTQIKYG-IERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISEL----- 257
F G Q G + + L LY TY + + +E
Sbjct: 159 IFGG---Q---GNTDDYFEELRDLY-------------QTYHVLVGDLIKFSAETLSELI 199
Query: 258 -----------TGLPFKS-------APNKFEALASHDALVEVSGALNTVAVSLMKIANDI 299
GL P+K + L S + +S L V + L
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDK-DYLLS----IPISCPLIGV-IQLAHYVVTA 253
Query: 300 RFLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGH 359
+ LG P GEL+ G++ + L V A VA+ S
Sbjct: 254 KLLGFTP----GELR--SYLKGAT--------GHSQGL--VTA------VAIAETDSWES 291
Query: 360 FELNVFKPLIVSNVLRSIRLL----ADTTESFTTKCVTGILPNEDTIAKHVNDSL----- 410
F +V ++I +L E++ PN + DSL
Sbjct: 292 FF---------VSVRKAITVLFFIGVRCYEAY---------PNTSLPPSILEDSLENNEG 333
Query: 411 ----ML-------------VTALNPHIGYDKAAEIA-----KHAYKTG---------ITL 439
ML V N H+ K EI+ K+ +G +TL
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 440 KEAAVKLGYLTEQEYDQWVKP---EKMLGPEYHPYFKPDNNETI---FHTE------KVI 487
++A G DQ P K ++ F P + FH+ +I
Sbjct: 394 RKAKAPSG------LDQSRIPFSERK---LKFSNRFLP-----VASPFHSHLLVPASDLI 439
Query: 488 SQQILAAKVLPPWSRPSCP 506
++ ++ V P
Sbjct: 440 NKDLVKNNVSFNAKDIQIP 458
Score = 47.7 bits (113), Expect = 1e-05
Identities = 59/335 (17%), Positives = 106/335 (31%), Gaps = 121/335 (36%)
Query: 46 EAIISAMGILKKAAAQVNKGFGLDSKIADTISKAADEVIS-----GKLYEDH--FP-LSI 97
+ +++A+ I A DS ++ + + I+ G + +P S+
Sbjct: 275 QGLVTAVAI---AET--------DS--WESFFVSVRKAITVLFFIG--VRCYEAYPNTSL 319
Query: 98 WQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVA 157
S + ++ NE ML +++ V D+VNK N P + ++
Sbjct: 320 PP--SILEDSLENNE---GVPSPMLSISNLTQEQVQ--DYVNKT---NSHLPAGKQVEIS 369
Query: 158 LEIHN----RLLC----SLQMLHDALDKKSQEFQNIIKIGRTHTQDATP-----LTLGQE 204
L N ++ SL L+ L K K Q P L
Sbjct: 370 L--VNGAKNLVVSGPPQSLYGLNLTLRK--------AKAPSGLDQSRIPFSERKLKFSNR 419
Query: 205 F--------SGYVTQIKYGIERVKDTLPRLY------QLAIGGTAVGTGLNTYVG----- 245
F S + + + L + + I V +T+ G
Sbjct: 420 FLPVASPFHSHLLVPAS---DLINKDLVKNNVSFNAKDIQI---PV---YDTFDGSDLRV 470
Query: 246 FAENCTQRISE-LTGLPFKSAPNKFEAL----ASHDALVEVSGALNTVAVSLMKIANDIR 300
+ + ++RI + + P K+E A+H I +
Sbjct: 471 LSGSISERIVDCII-----RLPVKWETTTQFKATH-------------------I---LD 503
Query: 301 FLGSGPRSGLGELKLPENEPGSS---IMPGKVNPT 332
F G G SGLG L N+ G+ I+ G ++
Sbjct: 504 F-GPGGASGLGVL-THRNKDGTGVRVIVAGTLDIN 536
Score = 46.2 bits (109), Expect = 3e-05
Identities = 64/382 (16%), Positives = 113/382 (29%), Gaps = 157/382 (41%)
Query: 60 AQVNKGFGLD----SKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVIS 115
+Q +G G+D SK A + AD ++D + SI +++
Sbjct: 1626 SQ-EQGMGMDLYKTSKAAQDVWNRAD-----NHFKDTYGFSI-------------LDIVI 1666
Query: 116 NRAIEM---LGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLH 172
N + + GG+ G + I M+
Sbjct: 1667 NNPVNLTIHFGGEKGKR------------------------------IRENYS---AMIF 1693
Query: 173 DALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSG-----YVTQIKYGIERVKDTLPRLY 227
+ + + + I K + + F TQ T
Sbjct: 1694 ETIVDGKLKTEKIFK-------EINEHSTSYTFRSEKGLLSATQF---------T----- 1732
Query: 228 QLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASH-----DALVEVS 282
Q A+ T + F + + +P + A H AL ++
Sbjct: 1733 QPAL--TLME-----KAAFED-----LKSKGLIPADAT------FAGHSLGEYAALASLA 1774
Query: 283 GALNT-VAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSSI--MPGKVNPTQV----- 334
++ V ++ R ++ +P +E G S M +NP +V
Sbjct: 1775 DVMSIESLVEVVFY-----------RGMTMQVAVPRDELGRSNYGMIA-INPGRVAASFS 1822
Query: 335 -EALTMVAAQV---MGNHVAVTVGGSN-----------GHFE-LNVFKPLIVSNVLRSIR 378
EAL V +V G V + V N G L+ V+NVL I+
Sbjct: 1823 QEALQYVVERVGKRTGWLVEI-V---NYNVENQQYVAAGDLRALDT-----VTNVLNFIK 1873
Query: 379 L----LADTTESFTTKCVTGIL 396
L + + +S + + V G L
Sbjct: 1874 LQKIDIIELQKSLSLEEVEGHL 1895
Score = 37.3 bits (86), Expect = 0.019
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 20/84 (23%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
R+ K + +E+ N Q V G+ A+ + +L Q
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYV-------AAGDL----RALDTVTNVLNFIKLQ----- 1875
Query: 67 GLD-SKIADTISKAADEVISGKLY 89
+D ++ ++S E + G L+
Sbjct: 1876 KIDIIELQKSLSL---EEVEGHLF 1896
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 49.5 bits (119), Expect = 2e-06
Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 16/192 (8%)
Query: 143 SSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLG 202
S ND T + + + + + + L L L +++ ++I G TH Q A P+
Sbjct: 114 SRNDQVVTDLKLFMKNSL-SIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWS 172
Query: 203 QEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAV-GTGLNTYVGFAENCTQRISELTGLP 261
Q + + ER+ + R+ L +G A+ G L+ R + L
Sbjct: 173 QFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLD---------IDREMLRSELE 223
Query: 262 FKSA-PNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN-E 319
F S N +A++ D +VE + + L K+A D+ + G L L +
Sbjct: 224 FASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFS 280
Query: 320 PGSSIMPGKVNP 331
G+S+MP K NP
Sbjct: 281 TGASLMPQKKNP 292
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase;
2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 49.5 bits (119), Expect = 2e-06
Identities = 53/192 (27%), Positives = 83/192 (43%), Gaps = 16/192 (8%)
Query: 143 SSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLG 202
S ND T + + + + LL + + L AL + +Q Q+ + G TH Q A P+T
Sbjct: 108 SRNDQVATDLKLWCKDTV-SELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFA 166
Query: 203 QEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAV-GTGLNTYVGFAENCTQRISELTGLP 261
YV + R++D L RL +G A+ GT R L
Sbjct: 167 HWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYE---------IDREQLAGWLG 217
Query: 262 FKS-APNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN-E 319
F S N ++++ D ++E+ A V L + A D+ F +G G ++L +
Sbjct: 218 FASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGE---AGFVELSDRVT 274
Query: 320 PGSSIMPGKVNP 331
GSS+MP K NP
Sbjct: 275 SGSSLMPQKKNP 286
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 48.3 bits (116), Expect = 5e-06
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 18/194 (9%)
Query: 143 SSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKI--GRTHTQDATPLT 200
S ND T + + + I + LL L L L +++++ + + + G TH Q A P+
Sbjct: 109 SRNDQVATDLRLYLRGAI-DELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRAQPVL 167
Query: 201 LGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAV-GTGLNTYVGFAENCTQRISELTG 259
L F Y +K R++D RL + +G A+ GTG R
Sbjct: 168 LAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAALAGTGFP---------IDRHFTARE 218
Query: 260 LPFKS-APNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN 318
L FK+ N +A+AS D +EV ALN + L ++A ++ + G +++P+
Sbjct: 219 LGFKAPMRNSLDAVASRDFALEVLSALNIGMLHLSRMAEELILYSTEE---FGFVEVPDA 275
Query: 319 -EPGSSIMPGKVNP 331
GSSIMP K NP
Sbjct: 276 FATGSSIMPQKKNP 289
>1w0n_A Endo-1,4-beta-xylanase D; hydrolase, carbohydrate-binding module,
carbohydrate binding, CBM36; 0.8A {Paenibacillus
polymyxa} SCOP: b.18.1.28 PDB: 1ux7_A
Length = 131
Score = 30.5 bits (68), Expect = 0.61
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 530 SSQPARPKRDLDAKMTTVPPSYFTSEFPSEAPLANLSHGNSSYPV 574
SS K DL TV FT + P+ L+N++H +
Sbjct: 65 SSNAGTAKVDLVIGGVTVGSFNFTGKTPTVQTLSNITHATGDQEI 109
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2
PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Length = 324
Score = 30.5 bits (70), Expect = 1.5
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 211 QIKYGIERVKDTLPRLYQLAIGGTAVGTGLN 241
Q ++G +RV DT P L + IGG A+G L
Sbjct: 44 QAEFGEDRVFDT-P-LAESGIGGLAIGLALQ 72
>1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich,
transferase; HET: 2FD; 2.40A {Trichomonas vaginalis}
PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A*
2i4t_A* 2isc_A*
Length = 235
Score = 30.1 bits (68), Expect = 1.7
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 8/107 (7%)
Query: 94 PLSIWQTGSGTQ-TNMNVNEVISN---RAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFP 149
P+S+ G G + E+ S + I +G +H D V + ++
Sbjct: 56 PISVMGHGMGLPSICIYAEELYSTYKVKTIIRVGTCGAIDMDIHTRDIVIFTSAGTNSKI 115
Query: 150 TAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDA 196
+ H+ + + AL ++E K+G+ + D
Sbjct: 116 NRIRFM----DHDYPATASFDVVCALVDAAKELNIPAKVGKGFSTDL 158
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 30.2 bits (68), Expect = 1.9
Identities = 9/74 (12%), Positives = 19/74 (25%), Gaps = 9/74 (12%)
Query: 70 SKIADTISKAADEVISGKLYE-----DHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGG 124
+ D D+ S + Y + + +++ S R E L
Sbjct: 17 KTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEI----REASLRTDEWLAS 72
Query: 125 KLGSKDPVHPNDHV 138
+L +
Sbjct: 73 ELAMTGVLQRQAKG 86
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Length = 338
Score = 30.2 bits (69), Expect = 1.9
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 211 QIKYGIERVKDTLPRLYQLAIGGTAVGTGLN 241
Q KYG RV D P + + I GTAVG G
Sbjct: 46 QTKYGKSRVFDA-P-ISESGIVGTAVGMGAY 74
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B*
1umc_B* 1umb_B*
Length = 324
Score = 30.2 bits (69), Expect = 2.0
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 211 QIKYGIERVKDTLPRLYQLAIGGTAVGTGLN 241
KYG +RV DT P L + AI G A+G +
Sbjct: 45 LQKYGPDRVMDT-P-LSEAAIVGAALGMAAH 73
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 2.2
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 252 QRISELTG-L-PFKSAPNKFEALASHDALVE 280
Q + +L L + A + ALA A +E
Sbjct: 20 QALKKLQASLKLY--ADDSAPALAI-KATME 47
Score = 28.8 bits (63), Expect = 3.3
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 8/27 (29%)
Query: 311 GELKL--PENEPGSSIMPGKVNPTQVE 335
LKL ++ P +I T +E
Sbjct: 27 ASLKLYADDSAPALAI-----KAT-ME 47
Score = 27.6 bits (60), Expect = 9.2
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 9 EKDSFGELEVPNDKYYGAQTVRSL-INFPI 37
EK + +L+ + K Y + +L I +
Sbjct: 18 EKQALKKLQ-ASLKLYADDSAPALAIKATM 46
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A
{Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Length = 231
Score = 29.8 bits (66), Expect = 2.4
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 7/75 (9%)
Query: 104 TQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNR 163
M ++ KL H DH+ + A +A +
Sbjct: 2 AGDPMITETQLT-AIQTYALQKLAHDHSGHGRDHLQR------VNRLARRLAKDEGANLN 54
Query: 164 LLCSLQMLHDALDKK 178
L + LHD +D K
Sbjct: 55 LTLAAAWLHDVIDDK 69
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB:
1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B*
1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B*
2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Length = 342
Score = 29.8 bits (68), Expect = 2.5
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 211 QIKYGIERVKDTLPRLYQLAIGGTAVGTGLN 241
+ KYG +RV +T P L + I G +G +
Sbjct: 61 RDKYGKDRVFNT-P-LCEQGIVGFGIGIAVT 89
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase;
2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Length = 369
Score = 29.9 bits (68), Expect = 2.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 211 QIKYGIERVKDTLPRLYQLAIGGTAVGTGLN 241
++G ERV DT P L + I G A+G +
Sbjct: 92 YERFGPERVIDT-P-LNEGGILGFAMGMAMA 120
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase,
oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP:
c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A*
1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Length = 564
Score = 30.0 bits (68), Expect = 2.9
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 425 AAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEYHPY 471
A ++ ++ Y + + Y ++ ++VK E+ EY
Sbjct: 507 AIKVTEYLYANKMAFR-------YPEPEDKAKYVK-ERTWRSEYDSL 545
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex,
type II TGF-beta receptor, activa alternative splicing,
cytoplasm; HET: DNA; 2.20A {Mus musculus}
Length = 103
Score = 28.1 bits (62), Expect = 3.3
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 417 NPHIGYDKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPE 461
N ++ Y+K + ++ YK I + +L Y + W + E
Sbjct: 53 NSNMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNSSGWKEEE 97
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative
decarboxylase, rossmann fold, MAla dehydrogenase; HET:
NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB:
1llq_A*
Length = 605
Score = 29.3 bits (66), Expect = 4.1
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 425 AAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEYHPY 471
A E+AK+ YK G A + Y ++ +++V+ ++ EY
Sbjct: 539 AVEMAKYCYKNGT----ANL---YPQPEDLEKYVR-AQVYNTEYEEL 577
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent,
NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET:
NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB:
2aw5_A
Length = 555
Score = 29.2 bits (66), Expect = 4.1
Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 425 AAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEYHPY 471
A IAK AY+ A+ Y ++ + +++ ++ +Y+ +
Sbjct: 502 AVRIAKEAYRNNT----AST---YPQPEDLEAFIR-SQVYSTDYNCF 540
>3ejn_A SUSD homolog; structural genomics, joint center for structur
genomics, JCSG, protein structure initiative, PSI-2,
sugar protein; HET: MSE; 1.50A {Bacteroides fragilis
nctc 9343} SCOP: a.118.8.6
Length = 474
Score = 29.0 bits (64), Expect = 5.6
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 2/72 (2%)
Query: 429 AKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEYHPYFKPDNNETIFHTEKVIS 488
A+ Y+ GI + + Y + L + + E E++I
Sbjct: 340 AQTYYEKGIRASFSFYETHAKDYAGYLNENAVAQYLKEPLVDFTQASGTEE--QIERIIM 397
Query: 489 QQILAAKVLPPW 500
Q+ L W
Sbjct: 398 QKYLVTFYQGNW 409
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.380
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,403,303
Number of extensions: 568481
Number of successful extensions: 1095
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1041
Number of HSP's successfully gapped: 56
Length of query: 638
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 538
Effective length of database: 3,909,693
Effective search space: 2103414834
Effective search space used: 2103414834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)