BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13009
(515 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MXO|A Chain A, Crystal Structure Oh Human Phosphoglycerate Mutase Family
Member 5 (Pgam5)
pdb|3MXO|B Chain B, Crystal Structure Oh Human Phosphoglycerate Mutase Family
Member 5 (Pgam5)
pdb|3O0T|A Chain A, Crystal Structure Of Human Phosphoglycerate Mutase Family
Member 5 (Pgam5) In Complex With Phosphate
pdb|3O0T|B Chain B, Crystal Structure Of Human Phosphoglycerate Mutase Family
Member 5 (Pgam5) In Complex With Phosphate
Length = 202
Score = 232 bits (592), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 118/236 (50%), Positives = 143/236 (60%), Gaps = 39/236 (16%)
Query: 34 QSKAVRNIFMIRHGQYNLDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSR 93
++KA R+IF+IRH QY++DG + +R LTPLGR QA T
Sbjct: 6 KAKATRHIFLIRHSQYHVDGSLEKDRTLTPLGREQAELT--------------------- 44
Query: 94 AIETAQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPDVPVEQCA 153
G RL L FNKI S+M+RAIET +IS+ LP V
Sbjct: 45 ------------------GLRLASLGLKFNKIVHSSMTRAIETTDIISRHLPGVCKVSTD 86
Query: 154 LLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADPSQEHDSYELLVCHANV 213
LL EGAP+ PDPPV HW+PE Q+++DG RIEAAFRN+ HRAD QE DSYE+ +CHANV
Sbjct: 87 LLREGAPIEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADARQEEDSYEIFICHANV 146
Query: 214 IRYFVCRSMQFPAEAWLRFSLYHASITWLQIYPNGRVTLRIYGDVGHMNPDKMTST 269
IRY VCR++QFP E WLR SL + SIT L I PNGRV LR GD G M PDK+T +
Sbjct: 147 IRYIVCRALQFPPEGWLRLSLNNGSITHLVIRPNGRVALRTLGDTGFMPPDKITRS 202
Score = 194 bits (493), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 90/152 (59%), Positives = 111/152 (73%)
Query: 350 QSKAVRNIFMIRHGQYNLDGKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSR 409
++KA R+IF+IRH QY++DG + +R LTPLGR QA TG RL L FNKI S+M+R
Sbjct: 6 KAKATRHIFLIRHSQYHVDGSLEKDRTLTPLGREQAELTGLRLASLGLKFNKIVHSSMTR 65
Query: 410 AIETAQLISQSLPDVPVEQCALLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFF 469
AIET +IS+ LP V LL EGAP+ PDPPV HW+PE Q+++DG RIEAAFRN+
Sbjct: 66 AIETTDIISRHLPGVCKVSTDLLREGAPIEPDPPVSHWKPEAVQYYEDGARIEAAFRNYI 125
Query: 470 HRADPSQEHDSYELLVCHANVIRYFVCRIISF 501
HRAD QE DSYE+ +CHANVIRY VCR + F
Sbjct: 126 HRADARQEEDSYEIFICHANVIRYIVCRALQF 157
>pdb|3EOZ|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From
Plasmodium Falciparum, Pfd0660w
pdb|3EOZ|B Chain B, Crystal Structure Of Phosphoglycerate Mutase From
Plasmodium Falciparum, Pfd0660w
Length = 214
Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 112/229 (48%), Gaps = 40/229 (17%)
Query: 34 QSKAVRNIFMIRHGQYNLDGKTDAE-RVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMS 92
Q ++I ++RHGQY K D + LT G QA TGK+LK
Sbjct: 17 QGNTTKHIILVRHGQYERRYKDDENSKRLTKEGCKQADITGKKLK--------------- 61
Query: 93 RAIETAQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPDVPVEQC 152
+ K++ V I+ S RA ETA +IS+ PD +
Sbjct: 62 ---------------DILNNKKVSV-------IYHSDXIRAKETANIISKYFPDANLIND 99
Query: 153 ALLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADPSQEHDSYELLVCHAN 212
L EG P PDP H + + + +D RI A+ +F++ PS + D Y+L++CH N
Sbjct: 100 PNLNEGTPYLPDPLPRHSKFDAQKIKEDNKRINKAYETYFYK--PSGDEDEYQLVICHGN 157
Query: 213 VIRYFVCRSMQFPAEAWLRFSLYHASITWLQIYPNGRVTLRIYGDVGHM 261
VIRYF+CR++Q P AWLRFS Y+ ITWL + G V LR +G V H+
Sbjct: 158 VIRYFLCRALQIPLFAWLRFSSYNCGITWLVLDDEGSVVLREFGSVSHL 206
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 86/159 (54%), Gaps = 9/159 (5%)
Query: 350 QSKAVRNIFMIRHGQYNLDGKTDAE-RVLTPLGRSQALDTGKRLKVLDYPFNK----IHV 404
Q ++I ++RHGQY K D + LT G QA TGK+LK D NK I+
Sbjct: 17 QGNTTKHIILVRHGQYERRYKDDENSKRLTKEGCKQADITGKKLK--DILNNKKVSVIYH 74
Query: 405 STMSRAIETAQLISQSLPDVPVEQCALLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAA 464
S RA ETA +IS+ PD + L EG P PDP H + + + +D RI A
Sbjct: 75 SDXIRAKETANIISKYFPDANLINDPNLNEGTPYLPDPLPRHSKFDAQKIKEDNKRINKA 134
Query: 465 FRNFFHRADPSQEHDSYELLVCHANVIRYFVCRIISFKL 503
+ +F++ PS + D Y+L++CH NVIRYF+CR + L
Sbjct: 135 YETYFYK--PSGDEDEYQLVICHGNVIRYFLCRALQIPL 171
>pdb|3E9C|A Chain A, Structure Of A Tryptic Core Fragment Of Tigar From Danio
Rerio
pdb|3E9C|B Chain B, Structure Of A Tryptic Core Fragment Of Tigar From Danio
Rerio
pdb|3E9D|A Chain A, Structure Of Full-Length Tigar From Danio Rerio
pdb|3E9D|B Chain B, Structure Of Full-Length Tigar From Danio Rerio
Length = 265
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 43 MIRHG--QYNLDGKTDAERVLTPL---GRSQALATGKRLKVLDYPFNKIHVSTMSRAIET 97
++RHG QYN D + + TPL G QA A G+ LK D F + VS + RAI+T
Sbjct: 8 IVRHGETQYNRDKLLQGQGIDTPLSDTGHQQAAAAGRYLK--DLHFTNVFVSNLQRAIQT 65
Query: 98 AQLISQSRSQALAT 111
A++I + + AT
Sbjct: 66 AEIILGNNLHSSAT 79
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 359 MIRHG--QYNLDGKTDAERVLTPL---GRSQALDTGKRLKVLDYPFNKIHVSTMSRAIET 413
++RHG QYN D + + TPL G QA G+ LK D F + VS + RAI+T
Sbjct: 8 IVRHGETQYNRDKLLQGQGIDTPLSDTGHQQAAAAGRYLK--DLHFTNVFVSNLQRAIQT 65
Query: 414 AQLI 417
A++I
Sbjct: 66 AEII 69
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 107 QALATGKRLKVLDYPFNKIHVSTMSRAIETAQLI 140
QA A G+ LK D F + VS + RAI+TA++I
Sbjct: 38 QAAAAGRYLK--DLHFTNVFVSNLQRAIQTAEII 69
>pdb|3E9E|A Chain A, Structure Of Full-Length H11a Mutant Form Of Tigar From
Danio Rerio
pdb|3E9E|B Chain B, Structure Of Full-Length H11a Mutant Form Of Tigar From
Danio Rerio
Length = 265
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 43 MIRHG--QYNLDGKTDAERVLTPL---GRSQALATGKRLKVLDYPFNKIHVSTMSRAIET 97
++R G QYN D + + TPL G QA A G+ LK D F + VS + RAI+T
Sbjct: 8 IVRAGETQYNRDKLLQGQGIDTPLSDTGHQQAAAAGRYLK--DLHFTNVFVSNLQRAIQT 65
Query: 98 AQLISQSRSQALAT 111
A++I + + AT
Sbjct: 66 AEIILGNNLHSSAT 79
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 359 MIRHG--QYNLDGKTDAERVLTPL---GRSQALDTGKRLKVLDYPFNKIHVSTMSRAIET 413
++R G QYN D + + TPL G QA G+ LK D F + VS + RAI+T
Sbjct: 8 IVRAGETQYNRDKLLQGQGIDTPLSDTGHQQAAAAGRYLK--DLHFTNVFVSNLQRAIQT 65
Query: 414 AQLI 417
A++I
Sbjct: 66 AEII 69
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 107 QALATGKRLKVLDYPFNKIHVSTMSRAIETAQLI 140
QA A G+ LK D F + VS + RAI+TA++I
Sbjct: 38 QAAAAGRYLK--DLHFTNVFVSNLQRAIQTAEII 69
>pdb|1H2E|A Chain A, Bacillus Stearothermophilus Phoe (Previously Known As
Yhfr) In Complex With Phosphate
pdb|1H2F|A Chain A, Bacillus Stearothermophilus Phoe (Previously Known As
Yhfr) In Complex With Trivanadate
Length = 207
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 40 NIFMIRHGQ--YNLDGKTDA--ERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAI 95
+++ RHG+ +N++ + + LT GR A+ GKRL+ ++ I+ ST RA+
Sbjct: 3 TLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVE--LAAIYTSTSGRAL 60
Query: 96 ETAQLISQSRSQALATGKRLK 116
ETA+++ R + +RL+
Sbjct: 61 ETAEIVRGGRLIPIYQDERLR 81
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 356 NIFMIRHGQ--YNLDGKTDA--ERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAI 411
+++ RHG+ +N++ + + LT GR A+ GKRL+ ++ I+ ST RA+
Sbjct: 3 TLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVE--LAAIYTSTSGRAL 60
Query: 412 ETAQLISQSLPDVPVEQCALLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFF 469
ETA+++ +P+ Q L E +G W+ + H + I AF +F+
Sbjct: 61 ETAEIVRGGRL-IPIYQDERLRE-------IHLGDWEGKTHDEIRQMDPI--AFDHFW 108
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 34/205 (16%)
Query: 84 NKIHVSTMSRAIETAQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQS 143
K +V + + + L + R A+ GKRL+ ++ I+ ST RA+ETA+++
Sbjct: 12 TKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVE--LAAIYTSTSGRALETAEIVRGG 69
Query: 144 LPDVPVEQCALLEEGAPVPPDPPVGHWQPEVH------------QFFQD----GPRIEAA 187
+P+ Q L E +G W+ + H F+Q P+
Sbjct: 70 RL-IPIYQDERLRE-------IHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGER 121
Query: 188 FRNFFHRADPSQEH--DSYE----LLVCHANVIRYFVCRSMQFPAE-AWLRFSLYHASIT 240
F + RA + + D +E L+V H V++ + P + W +Y S+T
Sbjct: 122 FCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAAFKDTPLDHLWSPPYMYGTSVT 181
Query: 241 WLQIYPNGRVTLRIYGDVGHMNPDK 265
+++ G + + GDV H+ K
Sbjct: 182 IIEV-DGGTFHVAVEGDVSHIEEVK 205
>pdb|1EBB|A Chain A, Bacillus Stearothermophilus Yhfr
Length = 202
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 40 NIFMIRHGQ--YNLDGKTDA--ERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAI 95
+++ RHG+ +N++ + + LT GR A+ GKRL+ ++ I+ ST RA+
Sbjct: 3 TLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVE--LAAIYTSTSGRAL 60
Query: 96 ETAQLISQSRSQALATGKRLK 116
ETA+++ R + +RL+
Sbjct: 61 ETAEIVRGGRLIPIYQDERLR 81
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 356 NIFMIRHGQ--YNLDGKTDA--ERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAI 411
+++ RHG+ +N++ + + LT GR A+ GKRL+ ++ I+ ST RA+
Sbjct: 3 TLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVE--LAAIYTSTSGRAL 60
Query: 412 ETAQLISQSLPDVPVEQCALLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFF 469
ETA+++ +P+ Q L E +G W+ + H + I AF +F+
Sbjct: 61 ETAEIVRGGRL-IPIYQDERLRE-------IHLGDWEGKTHDEIRQMDPI--AFDHFW 108
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 34/202 (16%)
Query: 84 NKIHVSTMSRAIETAQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQS 143
K +V + + + L + R A+ GKRL+ ++ I+ ST RA+ETA+++
Sbjct: 12 TKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVE--LAAIYTSTSGRALETAEIVRGG 69
Query: 144 LPDVPVEQCALLEEGAPVPPDPPVGHWQPEVH------------QFFQD----GPRIEAA 187
+P+ Q L E +G W+ + H F+Q P+
Sbjct: 70 RL-IPIYQDERLRE-------IHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGER 121
Query: 188 FRNFFHRADPSQEH--DSYE----LLVCHANVIRYFVCRSMQFPAE-AWLRFSLYHASIT 240
F + RA + + D +E L+V H V++ + P + W +Y S+T
Sbjct: 122 FCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAAFKDTPLDHLWSPPYMYGTSVT 181
Query: 241 WLQIYPNGRVTLRIYGDVGHMN 262
+++ G + + GDV H+
Sbjct: 182 IIEV-DGGTFHVAVEGDVSHIE 202
>pdb|1E59|A Chain A, E.Coli Cofactor-Dependent Phosphoglycerate Mutase
Complexed With Vanadate
Length = 249
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 37 AVRNIFMIRHG--QYN----LDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVST 90
AV + ++RHG Q+N G D + L+ G S+A A GK LK Y F+ + S
Sbjct: 1 AVTKLVLVRHGESQWNKENRFTGWYDVD--LSEKGVSEAKAAGKLLKEEGYSFDFAYTSV 58
Query: 91 MSRAIETAQLISQSRSQA 108
+ RAI T + QA
Sbjct: 59 LKRAIHTLWNVLDELDQA 76
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 353 AVRNIFMIRHG--QYN----LDGKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVST 406
AV + ++RHG Q+N G D + L+ G S+A GK LK Y F+ + S
Sbjct: 1 AVTKLVLVRHGESQWNKENRFTGWYDVD--LSEKGVSEAKAAGKLLKEEGYSFDFAYTSV 58
Query: 407 MSRAIETAQLISQSLPD--VPVEQCALLEE 434
+ RAI T + L +PVE+ L E
Sbjct: 59 LKRAIHTLWNVLDELDQAWLPVEKSWKLNE 88
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 100 LISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPD--VPVEQCALLEE 157
L + S+A A GK LK Y F+ + S + RAI T + L +PVE+ L E
Sbjct: 29 LSEKGVSEAKAAGKLLKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNE 88
>pdb|3KKK|A Chain A, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
pdb|3KKK|B Chain B, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
pdb|3KKK|C Chain C, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
pdb|3KKK|D Chain D, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
Length = 258
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 41 IFMIRHGQYNLD------GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRA 94
+ ++RHG+ + G TD L+ G +A+A GK LK ++ F+ ++ S + RA
Sbjct: 14 LVLLRHGESTWNKENKFTGWTDVP--LSEKGEEEAIAAGKYLKEKNFKFDVVYTSVLKRA 71
Query: 95 IETA 98
I TA
Sbjct: 72 ICTA 75
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 357 IFMIRHGQYNLD------GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRA 410
+ ++RHG+ + G TD L+ G +A+ GK LK ++ F+ ++ S + RA
Sbjct: 14 LVLLRHGESTWNKENKFTGWTDVP--LSEKGEEEAIAAGKYLKEKNFKFDVVYTSVLKRA 71
Query: 411 IETAQ--LISQSLPDVPVEQCALLEE 434
I TA L + L VPV + L E
Sbjct: 72 ICTAWNVLKTADLLHVPVVKTWRLNE 97
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 100 LISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQ--LISQSLPDVPVEQCALLEE 157
L + +A+A GK LK ++ F+ ++ S + RAI TA L + L VPV + L E
Sbjct: 38 LSEKGEEEAIAAGKYLKEKNFKFDVVYTSVLKRAICTAWNVLKTADLLHVPVVKTWRLNE 97
>pdb|1XQ9|A Chain A, Structure Of Phosphoglycerate Mutase From Plasmodium
Falciparum At 2.6 Resolution
pdb|1XQ9|B Chain B, Structure Of Phosphoglycerate Mutase From Plasmodium
Falciparum At 2.6 Resolution
Length = 258
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 357 IFMIRHGQYNLD------GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRA 410
+ ++RHG+ + G TD L+ G +A+ GK LK ++ F+ ++ S + RA
Sbjct: 14 LVLLRHGESTWNKENKFTGWTDVP--LSEKGEEEAIAAGKYLKEKNFKFDVVYTSVLKRA 71
Query: 411 IETAQ--LISQSLPDVPVEQCALLEE 434
I TA L + L VPV + L E
Sbjct: 72 ICTAWNVLKTADLLHVPVVKTWRLNE 97
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 41 IFMIRHGQYNLD------GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRA 94
+ ++RHG+ + G TD L+ G +A+A GK LK ++ F+ ++ S + RA
Sbjct: 14 LVLLRHGESTWNKENKFTGWTDVP--LSEKGEEEAIAAGKYLKEKNFKFDVVYTSVLKRA 71
Query: 95 IETA 98
I TA
Sbjct: 72 ICTA 75
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 100 LISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQ--LISQSLPDVPVEQCALLEE 157
L + +A+A GK LK ++ F+ ++ S + RAI TA L + L VPV + L E
Sbjct: 38 LSEKGEEEAIAAGKYLKEKNFKFDVVYTSVLKRAICTAWNVLKTADLLHVPVVKTWRLNE 97
>pdb|1YFK|A Chain A, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YFK|B Chain B, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|A Chain A, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|B Chain B, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|C Chain C, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|D Chain D, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|E Chain E, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|F Chain F, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|G Chain G, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|H Chain H, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|I Chain I, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|J Chain J, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|K Chain K, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|L Chain L, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
Length = 262
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 37 AVRNIFMIRHGQ--YNLD----GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVST 90
A + +IRHG+ +NL+ G DA+ L+P G +A G+ L+ Y F+ S
Sbjct: 2 AAYKLVLIRHGESAWNLENRFSGWYDAD--LSPAGHEEAKRGGQALRDAGYEFDICFTSV 59
Query: 91 MSRAIET 97
RAI T
Sbjct: 60 QKRAIRT 66
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 353 AVRNIFMIRHGQ--YNLD----GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVST 406
A + +IRHG+ +NL+ G DA+ L+P G +A G+ L+ Y F+ S
Sbjct: 2 AAYKLVLIRHGESAWNLENRFSGWYDAD--LSPAGHEEAKRGGQALRDAGYEFDICFTSV 59
Query: 407 MSRAIET 413
RAI T
Sbjct: 60 QKRAIRT 66
>pdb|1E58|A Chain A, E.Coli Cofactor-Dependent Phosphoglycerate Mutase
Length = 249
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 37 AVRNIFMIRHG--QYN----LDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVST 90
AV + ++R G Q+N G D + L+ G S+A A GK LK Y F+ + S
Sbjct: 1 AVTKLVLVRXGESQWNKENRFTGWYDVD--LSEKGVSEAKAAGKLLKEEGYSFDFAYTSV 58
Query: 91 MSRAIETAQLISQSRSQA 108
+ RAI T + QA
Sbjct: 59 LKRAIHTLWNVLDELDQA 76
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 353 AVRNIFMIRHG--QYN----LDGKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVST 406
AV + ++R G Q+N G D + L+ G S+A GK LK Y F+ + S
Sbjct: 1 AVTKLVLVRXGESQWNKENRFTGWYDVD--LSEKGVSEAKAAGKLLKEEGYSFDFAYTSV 58
Query: 407 MSRAIETAQLISQSLPD--VPVEQCALLEE 434
+ RAI T + L +PVE+ L E
Sbjct: 59 LKRAIHTLWNVLDELDQAWLPVEKSWKLNE 88
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 100 LISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPD--VPVEQCALLEE 157
L + S+A A GK LK Y F+ + S + RAI T + L +PVE+ L E
Sbjct: 29 LSEKGVSEAKAAGKLLKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNE 88
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 14/136 (10%)
Query: 305 GDVGHMNPDKMTSTREG-EYLVHPKKRSIVPEGLDLLKGTKDEKPVQSKAVRNIFMIRHG 363
DVG +N S RE + L H + D L D + +N+ ++RH
Sbjct: 139 ADVGEINDIVWVSVREARKILSHSTDK-------DTLAVFVDRVQEGAATAQNLLIVRHA 191
Query: 364 QYNLDGK---TDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIETAQLISQS 420
+ TDA R +TP G + A + L + ++ S R ET Q++S
Sbjct: 192 KAESRKSWKGTDANRPITPKGAAXAFALNRELACFNP--TRLATSPWLRCQETLQVLSWQ 249
Query: 421 LPDVPVEQCALLEEGA 436
+ P E L E A
Sbjct: 250 T-ERPXEHINTLTEDA 264
>pdb|3LNT|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b With Bound Malonic Acid
pdb|3LNT|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b With Bound Malonic Acid
Length = 250
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 357 IFMIRHGQYNLD------GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRA 410
+ +IRHG+ + G D + LT G +A G+ LK Y F+ + S + RA
Sbjct: 5 LVLIRHGESTWNKENRFTGWVDVD--LTEQGNREARQAGQLLKEAGYTFDIAYTSVLKRA 62
Query: 411 IET 413
I T
Sbjct: 63 IRT 65
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 41 IFMIRHGQYNLD------GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRA 94
+ +IRHG+ + G D + LT G +A G+ LK Y F+ + S + RA
Sbjct: 5 LVLIRHGESTWNKENRFTGWVDVD--LTEQGNREARQAGQLLKEAGYTFDIAYTSVLKRA 62
Query: 95 IET 97
I T
Sbjct: 63 IRT 65
>pdb|3EZN|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b
pdb|3EZN|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b
pdb|3FDZ|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b With Bound
2,3-Diphosphoglyceric Acid And 3- Phosphoglyceric Acid
pdb|3GP3|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP3|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP3|C Chain C, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP3|D Chain D, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP5|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 3-Phosphoglyceric Acid
And Vanadate
pdb|3GP5|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 3-Phosphoglyceric Acid
And Vanadate
pdb|3GW8|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With Vanadate And Glycerol
pdb|3GW8|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With Vanadate And Glycerol
Length = 257
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 357 IFMIRHGQYNLD------GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRA 410
+ +IRHG+ + G D + LT G +A G+ LK Y F+ + S + RA
Sbjct: 12 LVLIRHGESTWNKENRFTGWVDVD--LTEQGNREARQAGQLLKEAGYTFDIAYTSVLKRA 69
Query: 411 IET 413
I T
Sbjct: 70 IRT 72
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 41 IFMIRHGQYNLD------GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRA 94
+ +IRHG+ + G D + LT G +A G+ LK Y F+ + S + RA
Sbjct: 12 LVLIRHGESTWNKENRFTGWVDVD--LTEQGNREARQAGQLLKEAGYTFDIAYTSVLKRA 69
Query: 95 IET 97
I T
Sbjct: 70 IRT 72
>pdb|4EMB|A Chain A, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|B Chain B, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|C Chain C, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|D Chain D, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
Length = 274
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 41 IFMIRHGQYNLD------GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRA 94
+ ++RHG+ + G TD + L+ G +A+ G LK Y F+ S +SRA
Sbjct: 30 LVLVRHGESEWNKENLFTGWTDVK--LSDKGIDEAVEAGLLLKQEGYSFDIAFSSLLSRA 87
Query: 95 IETAQLISQSRSQALATGKR 114
+T +I + Q+ + K+
Sbjct: 88 NDTLNIILRELGQSYISVKK 107
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 357 IFMIRHGQYNLD------GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRA 410
+ ++RHG+ + G TD + L+ G +A++ G LK Y F+ S +SRA
Sbjct: 30 LVLVRHGESEWNKENLFTGWTDVK--LSDKGIDEAVEAGLLLKQEGYSFDIAFSSLLSRA 87
Query: 411 IETAQLISQSL 421
+T +I + L
Sbjct: 88 NDTLNIILREL 98
>pdb|3HJG|A Chain A, Crystal Structure Of Putative Alpha-Ribazole-5'-Phosphate
Phosphatase Cobc From Vibrio Parahaemolyticus
pdb|3HJG|B Chain B, Crystal Structure Of Putative Alpha-Ribazole-5'-Phosphate
Phosphatase Cobc From Vibrio Parahaemolyticus
Length = 213
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 40 NIFMIRHGQYN----LDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAI 95
NI+++RHG+ + L G+TD + Q +A + K Y I S +SR
Sbjct: 7 NIYLMRHGKVDAAPGLHGQTDLK---VKEAEQQQIAMAWKTK--GYDVAGIISSPLSRCH 61
Query: 96 ETAQLISQSRSQALATGKRLKVLDY 120
+ AQ++++ + + T L+ +D+
Sbjct: 62 DLAQILAEQQLLPMTTEDDLQEMDF 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,087,208
Number of Sequences: 62578
Number of extensions: 679614
Number of successful extensions: 1677
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1631
Number of HSP's gapped (non-prelim): 53
length of query: 515
length of database: 14,973,337
effective HSP length: 103
effective length of query: 412
effective length of database: 8,527,803
effective search space: 3513454836
effective search space used: 3513454836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)