RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13009
(515 letters)
>gnl|CDD|240279 PTZ00122, PTZ00122, phosphoglycerate mutase; Provisional.
Length = 299
Score = 215 bits (549), Expect = 5e-66
Identities = 92/244 (37%), Positives = 130/244 (53%), Gaps = 38/244 (15%)
Query: 25 KGTKDEKPVQSKAVRNIFMIRHGQYNLDGKTDAE-RVLTPLGRSQALATGKRLKVLDYPF 83
+G + +K + R I ++RHGQY + D + LT LG+ QA TGK LK
Sbjct: 91 RGKRADKSASHQ--RQIILVRHGQYINESSNDDNIKRLTELGKEQARITGKYLK------ 142
Query: 84 NKIHVSTMSRAIETAQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQS 143
+ + +D I+ S M+RA ETA++IS++
Sbjct: 143 ---------------EQFGEIL------------VDKKVKAIYHSDMTRAKETAEIISEA 175
Query: 144 LPDVPVEQCALLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADPSQEHDS 203
P V + + L EG P PDPP ++P + + +D RIEAAF +FHR P ++ DS
Sbjct: 176 FPGVRLIEDPNLAEGVPCAPDPPSRGFKPTIEEILEDMKRIEAAFEKYFHR--PVEDEDS 233
Query: 204 YELLVCHANVIRYFVCRSMQFPAEAWLRFSLYHASITWLQIYPNGRVTLRIYGDVGHMNP 263
E++VCH NVIRY VCR++Q P EAWLR SLY+ ITW+ I G V+L +G VGH+ P
Sbjct: 234 VEIIVCHGNVIRYLVCRALQLPPEAWLRLSLYNCGITWIVISSEGHVSLSGFGSVGHLPP 293
Query: 264 DKMT 267
D +T
Sbjct: 294 DMVT 297
Score = 165 bits (419), Expect = 5e-47
Identities = 68/164 (41%), Positives = 97/164 (59%), Gaps = 11/164 (6%)
Query: 341 KGTKDEKPVQSKAVRNIFMIRHGQYNLDGKTDAE-RVLTPLGRSQALDTGKRLK------ 393
+G + +K + R I ++RHGQY + D + LT LG+ QA TGK LK
Sbjct: 91 RGKRADKSASHQ--RQIILVRHGQYINESSNDDNIKRLTELGKEQARITGKYLKEQFGEI 148
Query: 394 VLDYPFNKIHVSTMSRAIETAQLISQSLPDVPVEQCALLEEGAPVPPDPPVGHWQPEVHQ 453
++D I+ S M+RA ETA++IS++ P V + + L EG P PDPP ++P + +
Sbjct: 149 LVDKKVKAIYHSDMTRAKETAEIISEAFPGVRLIEDPNLAEGVPCAPDPPSRGFKPTIEE 208
Query: 454 FFQDGPRIEAAFRNFFHRADPSQEHDSYELLVCHANVIRYFVCR 497
+D RIEAAF +FHR P ++ DS E++VCH NVIRY VCR
Sbjct: 209 ILEDMKRIEAAFEKYFHR--PVEDEDSVEIIVCHGNVIRYLVCR 250
>gnl|CDD|132718 cd07067, HP_PGM_like, Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction. Subgroup of the
catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This subgroup
contains cofactor-dependent and cofactor-independent
phosphoglycerate mutases (dPGM, and BPGM respectively),
fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and
related proteins. Functions include roles in metabolism,
signaling, or regulation, for example, F26BPase affects
glycolysis and gluconeogenesis through controlling the
concentration of F26BP; BPGM controls the concentration
of 2,3-BPG (the main allosteric effector of hemoglobin
in human blood cells); human Sts-1 is a T-cell
regulator; Escherichia coli Six A participates in the
ArcB-dependent His-to-Asp phosphorelay signaling system.
Deficiency and mutation in many of the human members
result in disease, for example erythrocyte BPGM
deficiency is a disease associated with a decrease in
the concentration of 2,3-BPG.
Length = 153
Score = 100 bits (250), Expect = 7e-25
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 33/147 (22%)
Query: 356 NIFMIRHGQ--YNLDGKT--DAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAI 411
++++RHG+ +N +G+ + LT GR QA GKRLK L F++I+ S + RAI
Sbjct: 1 RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKELGIKFDRIYSSPLKRAI 60
Query: 412 ETAQLISQSLPDVPVEQCALLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHR 471
+TA++I + LP +PVE L E R+ A
Sbjct: 61 QTAEIILEELPGLPVEVDPRLRE------------------------ARVLPALEELIAP 96
Query: 472 ADPSQEHDSYELLVCHANVIRYFVCRI 498
D L+V H V+R + +
Sbjct: 97 HD-----GKNVLIVSHGGVLRALLAYL 118
Score = 98.2 bits (245), Expect = 4e-24
Identities = 52/220 (23%), Positives = 81/220 (36%), Gaps = 72/220 (32%)
Query: 40 NIFMIRHGQ--YNLDGKT--DAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAI 95
++++RHG+ +N +G+ + LT GR QA A GKRLK L F++I+ S + RA
Sbjct: 1 RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKELGIKFDRIYSSPLKRA- 59
Query: 96 ETAQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPDVPVEQCALL 155
I+TA++I + LP +PVE L
Sbjct: 60 --------------------------------------IQTAEIILEELPGLPVEVDPRL 81
Query: 156 EEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADPSQEHDSYELLVCHANVIR 215
E R+ A D L+V H V+R
Sbjct: 82 RE------------------------ARVLPALEELIAPHD-----GKNVLIVSHGGVLR 112
Query: 216 YFVCRSMQFPAEAWLRFSLYHASITWLQIYPNGRVTLRIY 255
+ + E LR +L + SI+ L++ NG L +
Sbjct: 113 ALLAYLLGLSDEDILRLNLPNGSISVLELDENGGGVLLLR 152
>gnl|CDD|132716 cd07040, HP, Histidine phosphatase domain found in a functionally
diverse set of proteins, mostly phosphatases; contains a
His residue which is phosphorylated during the reaction.
Catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This set of
proteins includes cofactor-dependent and
cofactor-independent phosphoglycerate mutases (dPGM, and
BPGM respectively), fructose-2,6-bisphosphatase
(F26BP)ase, Sts-1, SixA, histidine acid phosphatases,
phytases, and related proteins. Functions include roles
in metabolism, signaling, or regulation, for example
F26BPase affects glycolysis and gluconeogenesis through
controlling the concentration of F26BP; BPGM controls
the concentration of 2,3-BPG (the main allosteric
effector of hemoglobin in human blood cells); human
Sts-1 is a T-cell regulator; Escherichia coli Six A
participates in the ArcB-dependent His-to-Asp
phosphorelay signaling system; phytases scavenge
phosphate from extracellular sources. Deficiency and
mutation in many of the human members result in disease,
for example erythrocyte BPGM deficiency is a disease
associated with a decrease in the concentration of
2,3-BPG. Clinical applications include the use of
prostatic acid phosphatase (PAP) as a serum marker for
prostate cancer. Agricultural applications include the
addition of phytases to animal feed.
Length = 153
Score = 82.8 bits (205), Expect = 1e-18
Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 35/147 (23%)
Query: 357 IFMIRHGQ--YNLDGKT--DAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIE 412
++++RHG+ N +G+ + LT GR QA + GK L+ F++I+ S + RAI+
Sbjct: 2 LYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRERYIKFDRIYSSPLKRAIQ 61
Query: 413 TAQLISQSL-PDVPVEQCALLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHR 471
TA++I + L +PVE R+ A R
Sbjct: 62 TAEIILEGLFEGLPVEV---------------------------DPRARVLNALLELLAR 94
Query: 472 ADPSQEHDSYELLVCHANVIRYFVCRI 498
+ L+V H IR + +
Sbjct: 95 HLLDGK---NVLIVSHGGTIRALLAAL 118
Score = 78.6 bits (194), Expect = 2e-17
Identities = 43/220 (19%), Positives = 72/220 (32%), Gaps = 74/220 (33%)
Query: 41 IFMIRHGQ--YNLDGKT--DAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIE 96
++++RHG+ N +G+ + LT GR QA GK L+ F++I+ S + RA
Sbjct: 2 LYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRERYIKFDRIYSSPLKRA-- 59
Query: 97 TAQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSL-PDVPVEQCALL 155
I+TA++I + L +PVE
Sbjct: 60 -------------------------------------IQTAEIILEGLFEGLPVEV---- 78
Query: 156 EEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADPSQEHDSYELLVCHANVIR 215
R+ A R + L+V H IR
Sbjct: 79 -----------------------DPRARVLNALLELLARHLLDGK---NVLIVSHGGTIR 112
Query: 216 YFVCRSMQFPAEAWLRFSLYHASITWLQIYPNGRVTLRIY 255
+ + E L +L + SI L++ G +R+
Sbjct: 113 ALLAALLGLSDEEILSLNLPNGSILVLELDECGGKYVRLL 152
>gnl|CDD|215845 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch
1). The histidine phosphatase superfamily is so named
because catalysis centres on a conserved His residue
that is transiently phosphorylated during the catalytic
cycle. Other conserved residues contribute to a
'phosphate pocket' and interact with the phospho group
of substrate before, during and after its transfer to
the His residue. Structure and sequence analyses show
that different families contribute different additional
residues to the 'phosphate pocket' and, more
surprisingly, differ in the position, in sequence and in
three dimensions, of a catalytically essential acidic
residue. The superfamily may be divided into two main
branches. The larger branch 1 contains a wide variety of
catalytic functions, the best known being fructose
2,6-bisphosphatase (found in a bifunctional protein with
2-phosphofructokinase) and cofactor-dependent
phosphoglycerate mutase. The latter is an unusual
example of a mutase activity in the superfamily: the
vast majority of members appear to be phosphatases. The
bacterial regulatory protein phosphatase SixA is also in
branch 1 and has a minimal, and possible ancestral-like
structure, lacking the large domain insertions that
contribute to binding of small molecules in branch 1
members.
Length = 154
Score = 80.2 bits (198), Expect = 9e-18
Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 27/160 (16%)
Query: 356 NIFMIRHGQY-----NLDGKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRA 410
++++RHG+ L G TD LT LGR QA GKRLK PF++I+ S + RA
Sbjct: 1 RLYLVRHGETEWNVERLQGDTD--SPLTELGREQARALGKRLK--GIPFDRIYSSPLLRA 56
Query: 411 IETAQLISQSLPDVPVEQCALLEE-------------GAPVPPDPPVGHWQPEVHQFFQD 457
I+TA++++++L +P+ L E P+ +
Sbjct: 57 IQTAEILAEAL-GLPIIVDPRLRERDFGDWEGLTFDEIKAEFPEELRAWLEDPADFRPPG 115
Query: 458 GPRIEAAF---RNFFHRADPSQEHDSYELLVCHANVIRYF 494
G + + + L+V H VIR
Sbjct: 116 GESLADVYERVEAALEELLAKHPGGNV-LIVSHGGVIRAL 154
Score = 76.3 bits (188), Expect = 2e-16
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 38/185 (20%)
Query: 40 NIFMIRHGQY-----NLDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRA 94
++++RHG+ L G TD LT LGR QA A GKRLK PF++I+ S + RA
Sbjct: 1 RLYLVRHGETEWNVERLQGDTD--SPLTELGREQARALGKRLK--GIPFDRIYSSPLLRA 56
Query: 95 IETAQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPDVPVEQCAL 154
I+TA++++++ + RL+ D+ + L + E+
Sbjct: 57 IQTAEILAEALGLPIIVDPRLRERDFG-------------DWEGLTFDEIKAEFPEELRA 103
Query: 155 LEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADPSQEHDSYE--LLVCHAN 212
E P +V++ R+EAA L+V H
Sbjct: 104 WLEDPADFRPPGGESLA-DVYE------RVEAALEELL-------AKHPGGNVLIVSHGG 149
Query: 213 VIRYF 217
VIR
Sbjct: 150 VIRAL 154
>gnl|CDD|214859 smart00855, PGAM, Phosphoglycerate mutase family. Phosphoglycerate
mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are
structurally related enzymes that catalyse reactions
involving the transfer of phospho groups between the
three carbon atoms of phosphoglycerate... Both enzymes
can catalyse three different reactions with different
specificities, the isomerization of 2-phosphoglycerate
(2-PGA) to 3-phosphoglycerate (3-PGA) with
2,3-diphosphoglycerate (2,3-DPG) as the primer of the
reaction, the synthesis of 2,3-DPG from 1,3-DPG with
3-PGA as a primer and the degradation of 2,3-DPG to
3-PGA (phosphatase activity). In mammals, PGAM is a
dimeric protein with two isoforms, the M (muscle) and B
(brain) forms. In yeast, PGAM is a tetrameric protein.
Length = 158
Score = 74.4 bits (183), Expect = 8e-16
Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 32/183 (17%)
Query: 41 IFMIRHGQ--YNLDGK--TDAERVLTPLGRSQALATGKRLK-VLDYPFNKIHVSTMSRAI 95
+++IRHG+ +N +G+ D + LT LGR+QA A G+ L +L F+ ++ S + RA
Sbjct: 2 LYLIRHGETEWNREGRLYGDTDVPLTELGRAQAEALGRLLASLLLPRFDVVYSSPLKRAR 61
Query: 96 ETAQLISQSRSQALATGKRLKVLDY-PFNKIHVSTMSRAIETAQLISQSLPDVPVEQCAL 154
+TA+ ++ + L+ D+ + + ++ L A
Sbjct: 62 QTAEALAIALGL-----PGLRERDFGAWEGLTWDEIAAKYPEEYLA------------AW 104
Query: 155 LEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADPSQEHDSYELLVCHANVI 214
+ P PP PP G ++ + R+E A AD S ++ L+V H VI
Sbjct: 105 RDPYDPAPPAPPGGESLADLVE------RVEPALDELIATADASGQN---VLIVSHGGVI 155
Query: 215 RYF 217
R
Sbjct: 156 RAL 158
Score = 70.6 bits (173), Expect = 2e-14
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 21/158 (13%)
Query: 357 IFMIRHGQ--YNLDGK--TDAERVLTPLGRSQALDTGKRLK-VLDYPFNKIHVSTMSRAI 411
+++IRHG+ +N +G+ D + LT LGR+QA G+ L +L F+ ++ S + RA
Sbjct: 2 LYLIRHGETEWNREGRLYGDTDVPLTELGRAQAEALGRLLASLLLPRFDVVYSSPLKRAR 61
Query: 412 ETAQLISQSLPDVPVEQCAL-------LEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAA 464
+TA+ ++ +L + + +E A P+ + W+ P E +
Sbjct: 62 QTAEALAIALGLPGLRERDFGAWEGLTWDEIAAKYPEEYLAAWRDPYDPAPPAPPGGE-S 120
Query: 465 FRNFFHRADP------SQEHDSYE--LLVCHANVIRYF 494
+ R +P + S + L+V H VIR
Sbjct: 121 LADLVERVEPALDELIATADASGQNVLIVSHGGVIRAL 158
>gnl|CDD|223483 COG0406, phoE, Broad specificity phosphatase PhoE and related
phosphatases [General function prediction only].
Length = 208
Score = 73.3 bits (180), Expect = 6e-15
Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 35/234 (14%)
Query: 39 RNIFMIRHGQ--YN----LDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMS 92
++++RHG+ +N L G TD+ LT GR+QA A +RL D F+ I+ S +
Sbjct: 3 MRLYLVRHGETEWNVEGRLQGWTDSP--LTEEGRAQAEALAERLAARDIGFDAIYSSPLK 60
Query: 93 RAIETAQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPDVPVEQC 152
RA +TA+ +++ L RL+ +D+ T +++ P+
Sbjct: 61 RAQQTAEPLAEELGLPLEVDDRLREIDFG---------DWEGLTIDELAEEPPE------ 105
Query: 153 ALLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADPSQEHDSYELLVCHAN 212
E A + E R+ AA + L+V H
Sbjct: 106 ---ELAAWLADPYLAPPPGGESLADVSK--RVVAALAELLRSPPGNN-----VLVVSHGG 155
Query: 213 VIRYFVCRSMQFPAEAWLRFSLYHASITWLQIYPNGRVTLRIYGDVGHMNPDKM 266
VIR + + E R L +AS+T L+ + R GD+ ++ +
Sbjct: 156 VIRALLAYLLGLDLEELWRLRLDNASVTVLEFDDGRFI--RTLGDLSYLEAGRE 207
Score = 64.8 bits (158), Expect = 5e-12
Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 22/164 (13%)
Query: 355 RNIFMIRHGQ--YN----LDGKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMS 408
++++RHG+ +N L G TD+ LT GR+QA +RL D F+ I+ S +
Sbjct: 3 MRLYLVRHGETEWNVEGRLQGWTDSP--LTEEGRAQAEALAERLAARDIGFDAIYSSPLK 60
Query: 409 RAIETAQLISQSLPDVPVEQCALLE------EGAPVP-----PDPPVGHWQPEVHQFFQD 457
RA +TA+ +++ L L E EG + P + W + +
Sbjct: 61 RAQQTAEPLAEELGLPLEVDDRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLAPPP 120
Query: 458 GPRIEAAFRNFFHRA--DPSQEHDSYE-LLVCHANVIRYFVCRI 498
G A A + + L+V H VIR + +
Sbjct: 121 GGESLADVSKRVVAALAELLRSPPGNNVLVVSHGGVIRALLAYL 164
>gnl|CDD|234131 TIGR03162, ribazole_cobC, alpha-ribazole phosphatase. Members of
this protein family include the known CobC protein of
Salmonella and Eschichia coli species, and homologous
proteins found in cobalamin biosynthesis regions in
other bacteria. This protein is alpha-ribazole
phosphatase (EC 3.1.3.73) and, like many phosphatases,
can be closely related in sequence to other phosphatases
with different functions. Close homologs excluded from
this model include proteins with duplications, so this
model is built in -g mode to suppress hits to those
proteins [Biosynthesis of cofactors, prosthetic groups,
and carriers, Heme, porphyrin, and cobalamin].
Length = 177
Score = 62.6 bits (153), Expect = 2e-11
Identities = 48/213 (22%), Positives = 86/213 (40%), Gaps = 47/213 (22%)
Query: 41 IFMIRHGQYNLD-----GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAI 95
+++IRHG+ +++ G+TD L G QA A ++L D PF+ ++ S +SR
Sbjct: 1 LYLIRHGETDVNAGLCYGQTDVP--LAESGEEQAAALREKLA--DVPFDAVYSSPLSRCR 56
Query: 96 ETAQLISQSRSQALATGKRLKVLD------YPFNKIHVSTMSRAIETAQLISQSLPDVPV 149
E A+++++ R + RL+ +D +++I A +
Sbjct: 57 ELAEILAERRGLPIIKDDRLREMDFGDWEGRSWDEI-----PEAYPELDAWAADWQHAR- 110
Query: 150 EQCALLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADPSQEHDSYELLVC 209
PP G + +Q R+ F + E D+ L+V
Sbjct: 111 ---------------PPGGESFADFYQ------RVS----EFLEELLKAHEGDNV-LIVT 144
Query: 210 HANVIRYFVCRSMQFPAEAWLRFSLYHASITWL 242
H VIR + + P E W F++ + SIT +
Sbjct: 145 HGGVIRALLAHLLGLPLEQWWSFAVEYGSITLI 177
Score = 52.2 bits (126), Expect = 5e-08
Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 24/167 (14%)
Query: 357 IFMIRHGQYNLD-----GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAI 411
+++IRHG+ +++ G+TD L G QA ++L D PF+ ++ S +SR
Sbjct: 1 LYLIRHGETDVNAGLCYGQTDVP--LAESGEEQAAALREKLA--DVPFDAVYSSPLSRCR 56
Query: 412 ETAQLISQSLPDVPVEQCALLE------EGAP----VPPDPPVGHWQPE-VHQFFQDG-- 458
E A+++++ ++ L E EG P + W + H G
Sbjct: 57 ELAEILAERRGLPIIKDDRLREMDFGDWEGRSWDEIPEAYPELDAWAADWQHARPPGGES 116
Query: 459 -PRIEAAFRNFFHRADPSQEHDSYELLVCHANVIRYFVCRIISFKLK 504
F + E D+ L+V H VIR + ++ L+
Sbjct: 117 FADFYQRVSEFLEELLKAHEGDNV-LIVTHGGVIRALLAHLLGLPLE 162
>gnl|CDD|224973 COG2062, SixA, Phosphohistidine phosphatase SixA [Signal
transduction mechanisms].
Length = 163
Score = 53.8 bits (130), Expect = 1e-08
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 355 RNIFMIRHG--QYNLDGKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIE 412
++++RHG ++ G D +R LT GR +A L + + VS RA +
Sbjct: 2 MRLYLMRHGKAEWAAPGIADFDRPLTERGRKEAELVAAWLAGQGVEPDLVLVSPAVRARQ 61
Query: 413 TAQLISQSLPDVPVEQCALL 432
TA+++++ L + VE L
Sbjct: 62 TAEIVAEHLGEKKVEVFEEL 81
Score = 53.4 bits (129), Expect = 2e-08
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 39 RNIFMIRHG--QYNLDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIE 96
++++RHG ++ G D +R LT GR +A L + + VS RA +
Sbjct: 2 MRLYLMRHGKAEWAAPGIADFDRPLTERGRKEAELVAAWLAGQGVEPDLVLVSPAVRARQ 61
Query: 97 TAQLI 101
TA+++
Sbjct: 62 TAEIV 66
>gnl|CDD|184966 PRK15004, PRK15004, alpha-ribazole phosphatase; Provisional.
Length = 199
Score = 52.7 bits (127), Expect = 7e-08
Identities = 49/230 (21%), Positives = 82/230 (35%), Gaps = 50/230 (21%)
Query: 41 IFMIRHGQY--NLD----GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRA 94
++++RHG+ N+D G LT G QA L+ D PF+ + S + RA
Sbjct: 3 LWLVRHGETQANVDGLYSGHAPTP--LTARGIEQAQNLHTLLR--DVPFDLVLCSELERA 58
Query: 95 IETAQLISQSRSQALATGKRLKVLDY-PFNKIHVSTMSRAIETAQLISQSLPDVPVEQCA 153
TA+L+ R + L + + + H + + E A+ + D
Sbjct: 59 QHTARLVLSDRQLPVHIIPELNEMFFGDWEMRHHRDLMQ--EDAENYAAWCND------- 109
Query: 154 LLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADP------SQEHDSYELL 207
WQ + P F+ F R + + +H L+
Sbjct: 110 ----------------WQHAI-------PTNGEGFQAFSQRVERFIARLSAFQHYQNLLI 146
Query: 208 VCHANVIRYFVCRSMQFPAEAWLRFSLYHASITWLQIYPNGRVTLRIYGD 257
V H V+ + R + PAEA F + + + I G TLR+
Sbjct: 147 VSHQGVLSLLIARLLGMPAEAMWHFRVEQGCWSAIDIN-QGFATLRVLNS 195
Score = 48.5 bits (116), Expect = 1e-06
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 357 IFMIRHGQY--NLD----GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRA 410
++++RHG+ N+D G LT G QA + L+ D PF+ + S + RA
Sbjct: 3 LWLVRHGETQANVDGLYSGHAPTP--LTARGIEQAQNLHTLLR--DVPFDLVLCSELERA 58
Query: 411 IETAQLISQSLPDVPVEQCALLEE 434
TA+L+ +PV L E
Sbjct: 59 QHTARLVLSDR-QLPVHIIPELNE 81
>gnl|CDD|235734 PRK06193, PRK06193, hypothetical protein; Provisional.
Length = 206
Score = 48.1 bits (115), Expect = 2e-06
Identities = 32/94 (34%), Positives = 40/94 (42%), Gaps = 20/94 (21%)
Query: 373 AERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIETAQLISQ-----------SL 421
+R L+ GR QA G+ + L P K+ S RA ETAQL +
Sbjct: 70 TQRNLSEEGREQARAIGEAFRALAIPVGKVISSPYCRAWETAQLAFGRHEKEIRLNFLNS 129
Query: 422 PDVPVEQCALLEEGAP----VPPDPP-----VGH 446
VP E+ ALL+ G PPDP VGH
Sbjct: 130 EPVPAERNALLKAGLRPLLTTPPDPGTNTVLVGH 163
Score = 45.8 bits (109), Expect = 1e-05
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 57 AERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLIS 102
+R L+ GR QA A G+ + L P K+ S RA ETAQL
Sbjct: 70 TQRNLSEEGREQARAIGEAFRALAIPVGKVISSPYCRAWETAQLAF 115
Score = 41.2 bits (97), Expect = 5e-04
Identities = 31/91 (34%), Positives = 38/91 (41%), Gaps = 20/91 (21%)
Query: 99 QLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQ-----------SLPDV 147
L + R QA A G+ + L P K+ S RA ETAQL + V
Sbjct: 73 NLSEEGREQARAIGEAFRALAIPVGKVISSPYCRAWETAQLAFGRHEKEIRLNFLNSEPV 132
Query: 148 PVEQCALLEEGAP----VPPDPP-----VGH 169
P E+ ALL+ G PPDP VGH
Sbjct: 133 PAERNALLKAGLRPLLTTPPDPGTNTVLVGH 163
>gnl|CDD|223661 COG0588, GpmA, Phosphoglycerate mutase 1 [Carbohydrate transport
and metabolism].
Length = 230
Score = 47.3 bits (113), Expect = 5e-06
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 354 VRNIFMIRHGQ--YNLDGK----TDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTM 407
+ + ++RHGQ +N + D + LT G S+A GK LK F+ + S +
Sbjct: 1 MMKLVLLRHGQSEWNKENLFTGWVDVD--LTEKGISEAKAAGKLLKEEGLEFDIAYTSVL 58
Query: 408 SRAIETAQLISQSL--PDVPVEQ 428
RAI+T ++ + +PV +
Sbjct: 59 KRAIKTLNIVLEESDQLWIPVIK 81
Score = 47.3 bits (113), Expect = 6e-06
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 38 VRNIFMIRHGQ--YNLDGK----TDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTM 91
+ + ++RHGQ +N + D + LT G S+A A GK LK F+ + S +
Sbjct: 1 MMKLVLLRHGQSEWNKENLFTGWVDVD--LTEKGISEAKAAGKLLKEEGLEFDIAYTSVL 58
Query: 92 SRAIETAQLI 101
RAI+T ++
Sbjct: 59 KRAIKTLNIV 68
Score = 35.7 bits (83), Expect = 0.039
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 98 AQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSL--PDVPVEQ 151
L + S+A A GK LK F+ + S + RAI+T ++ + +PV +
Sbjct: 26 VDLTEKGISEAKAAGKLLKEEGLEFDIAYTSVLKRAIKTLNIVLEESDQLWIPVIK 81
>gnl|CDD|129351 TIGR00249, sixA, phosphohistidine phosphatase SixA. [Regulatory
functions, Protein interactions].
Length = 152
Score = 45.6 bits (108), Expect = 9e-06
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 356 NIFMIRHGQYNLDGKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIETAQ 415
+F++RHG LD +D+ R LT G ++ + LK +I VS RA +TA+
Sbjct: 2 QLFIMRHGDAALDAASDSVRPLTTNGCDESRLVAQWLKGQGVEIERILVSPFVRAEQTAE 61
Query: 416 LISQSLPDVPVE 427
++ L ++P
Sbjct: 62 IVGDCL-NLPSS 72
Score = 44.8 bits (106), Expect = 2e-05
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 40 NIFMIRHGQYNLDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQ 99
+F++RHG LD +D+ R LT G ++ + LK +I VS RA +TA+
Sbjct: 2 QLFIMRHGDAALDAASDSVRPLTTNGCDESRLVAQWLKGQGVEIERILVSPFVRAEQTAE 61
Query: 100 LISQ 103
++
Sbjct: 62 IVGD 65
>gnl|CDD|167205 PRK01295, PRK01295, phosphoglyceromutase; Provisional.
Length = 206
Score = 44.3 bits (105), Expect = 4e-05
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 355 RNIFMIRHGQ--YNLD----GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMS 408
R + ++RHGQ +NL G D + LT G ++A G++LK F+ S +S
Sbjct: 3 RTLVLVRHGQSEWNLKNLFTGWRDPD--LTEQGVAEAKAAGRKLKAAGLKFDIAFTSALS 60
Query: 409 RAIETAQLISQSL--PDVPVEQCALLEE 434
RA T QLI + L P + + L E
Sbjct: 61 RAQHTCQLILEELGQPGLETIRDQALNE 88
Score = 42.8 bits (101), Expect = 2e-04
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 39 RNIFMIRHGQ--YNLD----GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMS 92
R + ++RHGQ +NL G D + LT G ++A A G++LK F+ S +S
Sbjct: 3 RTLVLVRHGQSEWNLKNLFTGWRDPD--LTEQGVAEAKAAGRKLKAAGLKFDIAFTSALS 60
Query: 93 RAIETAQLI 101
RA T QLI
Sbjct: 61 RAQHTCQLI 69
Score = 34.3 bits (79), Expect = 0.10
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 100 LISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSL--PDVPVEQCALLEE 157
L Q ++A A G++LK F+ S +SRA T QLI + L P + + L E
Sbjct: 29 LTEQGVAEAKAAGRKLKAAGLKFDIAFTSALSRAQHTCQLILEELGQPGLETIRDQALNE 88
>gnl|CDD|184516 PRK14115, gpmA, phosphoglyceromutase; Provisional.
Length = 247
Score = 44.9 bits (107), Expect = 4e-05
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 44 IRHGQ--YNLD----GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIET 97
IRHG+ +N + G TD + L+ G S+A A GK LK Y F+ + S + RAI T
Sbjct: 6 IRHGESQWNKENRFTGWTDVD--LSEKGVSEAKAAGKLLKEEGYTFDVAYTSVLKRAIRT 63
Query: 98 AQLI 101
++
Sbjct: 64 LWIV 67
Score = 43.3 bits (103), Expect = 1e-04
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 360 IRHGQ--YNLD----GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIET 413
IRHG+ +N + G TD + L+ G S+A GK LK Y F+ + S + RAI T
Sbjct: 6 IRHGESQWNKENRFTGWTDVD--LSEKGVSEAKAAGKLLKEEGYTFDVAYTSVLKRAIRT 63
Query: 414 AQLISQSLPD---VPVEQCALLEE 434
++ L D +PVE+ L E
Sbjct: 64 LWIVLDEL-DQMWLPVEKSWRLNE 86
>gnl|CDD|213596 TIGR01258, pgm_1, phosphoglycerate mutase, BPG-dependent, family 1.
Most members of this family are phosphoglycerate mutase
(EC 5.4.2.1). This enzyme interconverts
2-phosphoglycerate and 3-phosphoglycerate. The enzyme is
transiently phosphorylated on an active site histidine
by 2,3-diphosphoglyerate, which is both substrate and
product. Some members of this family have are
phosphoglycerate mutase as a minor activity and act
primarily as a bisphoglycerate mutase, interconverting
2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC
5.4.2.4). This model is designated as a subfamily for
this reason. The second and third paralogs in S.
cerevisiae are somewhat divergent and apparently
inactive (see PUBMED:9544241) but are also part of this
subfamily phylogenetically.
Length = 245
Score = 43.6 bits (103), Expect = 1e-04
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 43 MIRHGQ-----YNL-DGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIE 96
++RHG+ NL G D + L+ G+ +A G+ LK Y F+ + S + RAI
Sbjct: 5 LVRHGESEWNALNLFTGWVDVK--LSEKGQQEAKRAGELLKEEGYEFDVAYTSLLKRAIH 62
Query: 97 TAQLISQSRSQA 108
T + Q
Sbjct: 63 TLNIALDELDQL 74
Score = 43.2 bits (102), Expect = 1e-04
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 359 MIRHGQ-----YNL-DGKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIE 412
++RHG+ NL G D + L+ G+ +A G+ LK Y F+ + S + RAI
Sbjct: 5 LVRHGESEWNALNLFTGWVDVK--LSEKGQQEAKRAGELLKEEGYEFDVAYTSLLKRAIH 62
Query: 413 TAQLISQSL 421
T + L
Sbjct: 63 TLNIALDEL 71
Score = 32.4 bits (74), Expect = 0.42
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 98 AQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSL 144
+L + + +A G+ LK Y F+ + S + RAI T + L
Sbjct: 25 VKLSEKGQQEAKRAGELLKEEGYEFDVAYTSLLKRAIHTLNIALDEL 71
>gnl|CDD|182776 PRK10848, PRK10848, phosphohistidine phosphatase; Provisional.
Length = 159
Score = 38.9 bits (91), Expect = 0.002
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 357 IFMIRHGQYNLDGKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIETAQL 416
+F++RHG LD +D+ R LT G ++ LK ++ VS RA +T ++
Sbjct: 3 VFIMRHGDAALDAASDSVRPLTTCGCDESRLMANWLKGQKVDIERVLVSPYLRAEQTLEV 62
Query: 417 ISQSLPDVPVEQCALLE 433
+ + L +P L E
Sbjct: 63 VGECLN-LPASAEVLPE 78
Score = 34.7 bits (80), Expect = 0.041
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 41 IFMIRHGQYNLDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQL 100
+F++RHG LD +D+ R LT G ++ LK ++ VS RA +T ++
Sbjct: 3 VFIMRHGDAALDAASDSVRPLTTCGCDESRLMANWLKGQKVDIERVLVSPYLRAEQTLEV 62
Query: 101 ISQS 104
+ +
Sbjct: 63 VGEC 66
>gnl|CDD|163560 TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family.
A three-gene system broadly conserved among the
Actinobacteria includes MSMEG_4193 and homologs, a
subgroup among the larger phosphoglycerate mutase family
protein (pfam00300). Another member of the trio is a
probable kinase, related to phosphatidylinositol
kinases; that context supports the hypothesis that this
protein acts as a phosphomutase.
Length = 204
Score = 37.0 bits (86), Expect = 0.012
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 43 MIRHGQYN------LDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIE 96
++RHG+ L G+T L GR QA A +RL D P I S + R E
Sbjct: 4 LVRHGRSTANTAGTLAGRTPGVD-LDERGREQAAALAERLA--DLPIAAIVSSPLERCRE 60
Query: 97 TAQLISQSRSQALATGKRLKVLDY 120
TA+ I+++R +RL DY
Sbjct: 61 TAEPIAEARGLPPRVDERLGECDY 84
Score = 34.6 bits (80), Expect = 0.061
Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 30/159 (18%)
Query: 359 MIRHGQYN------LDGKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIE 412
++RHG+ L G+T L GR QA +RL D P I S + R E
Sbjct: 4 LVRHGRSTANTAGTLAGRTPGVD-LDERGREQAAALAERLA--DLPIAAIVSSPLERCRE 60
Query: 413 TAQLISQSLPDVPVEQCALLE------EGAPVP---PDP--PVGHWQPEVHQF------F 455
TA+ I+++ P L E G + +P PV P F
Sbjct: 61 TAEPIAEARGLPPRVDERLGECDYGDWTGRELKELAKEPLWPVVQAHPSAAVFPGGESLA 120
Query: 456 QDGPRIEAAFRNFFHRADPSQEH--DSYELLVCHANVIR 492
Q R AA R H A + EH D+ + H +VI+
Sbjct: 121 QVQARAVAAVRE--HDARLAAEHGPDAVWVACSHGDVIK 157
Score = 30.0 bits (68), Expect = 2.3
Identities = 37/130 (28%), Positives = 50/130 (38%), Gaps = 23/130 (17%)
Query: 105 RSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPDVPVEQCALLE------EG 158
R QA A +RL D P I S + R ETA+ I+++ P L E G
Sbjct: 32 REQAAALAERLA--DLPIAAIVSSPLERCRETAEPIAEARGLPPRVDERLGECDYGDWTG 89
Query: 159 APVP---PDP--PVGHWQPEVHQF------FQDGPRIEAAFRNFFHRADPSQEH--DSYE 205
+ +P PV P F Q R AA R H A + EH D+
Sbjct: 90 RELKELAKEPLWPVVQAHPSAAVFPGGESLAQVQARAVAAVRE--HDARLAAEHGPDAVW 147
Query: 206 LLVCHANVIR 215
+ H +VI+
Sbjct: 148 VACSHGDVIK 157
>gnl|CDD|234902 PRK01112, PRK01112, phosphoglyceromutase; Provisional.
Length = 228
Score = 35.9 bits (83), Expect = 0.029
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 43 MIRHGQ--YNLDGKTDAERVLTPL---GRSQALATGKRLKVLDYPFNKIHVSTMSRAIET 97
++RHGQ +N V PL G ++A+A G+++K D P + I ST+ R++ T
Sbjct: 6 LLRHGQSVWNAKNLFTG-WVDIPLSQQGIAEAIAAGEKIK--DLPIDCIFTSTLVRSLMT 62
Query: 98 AQL 100
A L
Sbjct: 63 ALL 65
Score = 35.1 bits (81), Expect = 0.051
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 359 MIRHGQ--YNLDGKTDAERVLTPL---GRSQALDTGKRLKVLDYPFNKIHVSTMSRAIET 413
++RHGQ +N V PL G ++A+ G+++K D P + I ST+ R++ T
Sbjct: 6 LLRHGQSVWNAKNLFTG-WVDIPLSQQGIAEAIAAGEKIK--DLPIDCIFTSTLVRSLMT 62
Query: 414 AQL 416
A L
Sbjct: 63 ALL 65
Score = 32.4 bits (74), Expect = 0.44
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 100 LISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQL 139
L Q ++A+A G+++K D P + I ST+ R++ TA L
Sbjct: 28 LSQQGIAEAIAAGEKIK--DLPIDCIFTSTLVRSLMTALL 65
>gnl|CDD|240280 PTZ00123, PTZ00123, phosphoglycerate mutase like-protein;
Provisional.
Length = 236
Score = 35.4 bits (82), Expect = 0.043
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 377 LTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSL--PDVPV 426
L+ G +A + GK LK + F+ ++ S + RAI+TA ++ + L VPV
Sbjct: 15 LSEKGVQEAREAGKLLKEKGFRFDVVYTSVLKRAIKTAWIVLEELGQLHVPV 66
Score = 33.1 bits (76), Expect = 0.22
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 61 LTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLI 101
L+ G +A GK LK + F+ ++ S + RAI+TA ++
Sbjct: 15 LSEKGVQEAREAGKLLKEKGFRFDVVYTSVLKRAIKTAWIV 55
Score = 31.6 bits (72), Expect = 0.85
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 99 QLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSL--PDVPV 149
L + +A GK LK + F+ ++ S + RAI+TA ++ + L VPV
Sbjct: 14 PLSEKGVQEAREAGKLLKEKGFRFDVVYTSVLKRAIKTAWIVLEELGQLHVPV 66
>gnl|CDD|172065 PRK13463, PRK13463, phosphatase PhoE; Provisional.
Length = 203
Score = 35.0 bits (80), Expect = 0.054
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 41 IFMIRHGQ--YNLDGKTDAER--VLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIE 96
+++ RHG+ +N+ + + LT G QA G+R+K D + I+ S R +
Sbjct: 5 VYVTRHGETEWNVAKRMQGRKNSALTENGILQAKQLGERMK--DLSIHAIYSSPSERTLH 62
Query: 97 TAQLISQSR 105
TA+LI R
Sbjct: 63 TAELIKGER 71
Score = 34.6 bits (79), Expect = 0.067
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 357 IFMIRHGQ--YNLDGKTDAER--VLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIE 412
+++ RHG+ +N+ + + LT G QA G+R+K D + I+ S R +
Sbjct: 5 VYVTRHGETEWNVAKRMQGRKNSALTENGILQAKQLGERMK--DLSIHAIYSSPSERTLH 62
Query: 413 TAQLISQSLPDVPV 426
TA+LI + D+P+
Sbjct: 63 TAELI-KGERDIPI 75
>gnl|CDD|179583 PRK03482, PRK03482, phosphoglycerate mutase; Provisional.
Length = 215
Score = 34.3 bits (79), Expect = 0.082
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 41 IFMIRHG--QYN----LDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRA 94
++++RHG Q+N + G++D+ LT G QA+ +R K L I S + R
Sbjct: 4 VYLVRHGETQWNAERRIQGQSDSP--LTAKGEQQAMQVAERAKELG--ITHIISSDLGRT 59
Query: 95 IETAQLISQSRSQALATGKRLKVLD 119
TA++I+Q+ + RL+ L+
Sbjct: 60 RRTAEIIAQACGCDIIFDPRLRELN 84
Score = 32.8 bits (75), Expect = 0.27
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 10/70 (14%)
Query: 357 IFMIRHG--QYN----LDGKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRA 410
++++RHG Q+N + G++D+ LT G QA+ +R K L I S + R
Sbjct: 4 VYLVRHGETQWNAERRIQGQSDSP--LTAKGEQQAMQVAERAKELG--ITHIISSDLGRT 59
Query: 411 IETAQLISQS 420
TA++I+Q+
Sbjct: 60 RRTAEIIAQA 69
>gnl|CDD|172608 PRK14118, gpmA, phosphoglyceromutase; Provisional.
Length = 227
Score = 33.8 bits (77), Expect = 0.13
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 44 IRHGQYNLDGK---TDAERV-LTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQ 99
IRHG + K T V LT G +A A GK+LK Y F+ S ++RAI+T
Sbjct: 6 IRHGFSEWNAKNLFTGWRDVNLTERGVEEAKAAGKKLKEAGYEFDIAFTSVLTRAIKTCN 65
Query: 100 LISQSRSQ 107
++ + +Q
Sbjct: 66 IVLEESNQ 73
Score = 30.7 bits (69), Expect = 1.4
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 360 IRHGQYNLDGK---TDAERV-LTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIETAQ 415
IRHG + K T V LT G +A GK+LK Y F+ S ++RAI+T
Sbjct: 6 IRHGFSEWNAKNLFTGWRDVNLTERGVEEAKAAGKKLKEAGYEFDIAFTSVLTRAIKTCN 65
Query: 416 LI 417
++
Sbjct: 66 IV 67
>gnl|CDD|180903 PRK07238, PRK07238, bifunctional RNase H/acid phosphatase;
Provisional.
Length = 372
Score = 33.4 bits (77), Expect = 0.27
Identities = 55/232 (23%), Positives = 84/232 (36%), Gaps = 47/232 (20%)
Query: 42 FMIRHGQYNLD------GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAI 95
++RHGQ L G+ + E LT +GR QA A + L + + S + RA
Sbjct: 175 LLLRHGQTELSVQRRYSGRGNPE--LTEVGRRQAAAAARYLAARG-GIDAVVSSPLQRAR 231
Query: 96 ETAQLISQSRSQALATGKRLKVLD----YPFNKIHVSTMSRAIET-AQLISQSLPDVPVE 150
+TA A A G + V D F T + A E +L L D V
Sbjct: 232 DTAAAA------AKALGLDVTVDDDLIETDFGAWEGLTFAEAAERDPELHRAWLADTSVA 285
Query: 151 QCALLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADPSQEHDSYELL-VC 209
PP G V + R+ A R E+ +L V
Sbjct: 286 --------------PPGGESFDAVAR------RVRRA------RDRLIAEYPGATVLVVS 319
Query: 210 HANVIRYFVCRSMQFPAEAWLRFSLYHASITWLQIYPNGRVTLRIYGDVGHM 261
H I+ + ++ R L AS++ + YP+G ++R+ D H+
Sbjct: 320 HVTPIKTLLRLALDAGPGVLYRLHLDLASLSIAEFYPDGPASVRLVNDTSHL 371
Score = 31.9 bits (73), Expect = 0.85
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 358 FMIRHGQYNLD------GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAI 411
++RHGQ L G+ + E LT +GR QA + L + + S + RA
Sbjct: 175 LLLRHGQTELSVQRRYSGRGNPE--LTEVGRRQAAAAARYLAARG-GIDAVVSSPLQRAR 231
Query: 412 ETAQLISQSL-PDVPVE 427
+TA +++L DV V+
Sbjct: 232 DTAAAAAKALGLDVTVD 248
Score = 29.9 bits (68), Expect = 3.1
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 245 YPNGRVTLRIYGDVGHMNPDKM-TSTSMQFPAEAWLRFSLYHASITWLQIYPNGRVTLRI 303
YP V + V H+ P K ++ R L AS++ + YP+G ++R+
Sbjct: 310 YPGATVLV-----VSHVTPIKTLLRLALDAGPGVLYRLHLDLASLSIAEFYPDGPASVRL 364
Query: 304 YGDVGHM 310
D H+
Sbjct: 365 VNDTSHL 371
>gnl|CDD|184517 PRK14117, gpmA, phosphoglyceromutase; Provisional.
Length = 230
Score = 32.7 bits (74), Expect = 0.31
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 361 RHGQYNLD------GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIETA 414
RHG+ + G D + L+ G QA+D GK +K F+ S + RAI+T
Sbjct: 8 RHGESEWNKANLFTGWADVD--LSEKGTQQAIDAGKLIKEAGIEFDLAFTSVLKRAIKTT 65
Query: 415 QLISQSLPD--VPVEQCALLEE 434
L ++ VPVE+ L E
Sbjct: 66 NLALEASDQLWVPVEKSWRLNE 87
Score = 28.5 bits (63), Expect = 7.9
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 45 RHGQYNLD------GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIETA 98
RHG+ + G D + L+ G QA+ GK +K F+ S + RAI+T
Sbjct: 8 RHGESEWNKANLFTGWADVD--LSEKGTQQAIDAGKLIKEAGIEFDLAFTSVLKRAIKTT 65
Query: 99 QLISQSRSQ 107
L ++ Q
Sbjct: 66 NLALEASDQ 74
>gnl|CDD|139587 PRK13462, PRK13462, acid phosphatase; Provisional.
Length = 203
Score = 32.5 bits (74), Expect = 0.36
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 41 IFMIRHGQYNLD------GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRA 94
+ ++RHG+ G+T+ E LT GR+QA G+ L L+ + S RA
Sbjct: 8 LLLLRHGETEWSKSGRHTGRTELE--LTETGRTQAELAGQALGELELDDPLVISSPRRRA 65
Query: 95 IETAQL 100
++TA+L
Sbjct: 66 LDTAKL 71
Score = 30.2 bits (68), Expect = 1.9
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 357 IFMIRHGQYNLD------GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRA 410
+ ++RHG+ G+T+ E LT GR+QA G+ L L+ + S RA
Sbjct: 8 LLLLRHGETEWSKSGRHTGRTELE--LTETGRTQAELAGQALGELELDDPLVISSPRRRA 65
Query: 411 IETAQL 416
++TA+L
Sbjct: 66 LDTAKL 71
>gnl|CDD|132717 cd07061, HP_HAP_like, Histidine phosphatase domain found in
histidine acid phosphatases and phytases; contains a His
residue which is phosphorylated during the reaction.
Catalytic domain of HAP (histidine acid phosphatases)
and phytases (myo-inositol hexakisphosphate
phosphohydrolases). The conserved catalytic core of this
domain contains a His residue which is phosphorylated in
the reaction. Functions in this subgroup include roles
in metabolism, signaling, or regulation, for example
Escherichia coli glucose-1-phosphatase functions to
scavenge glucose from glucose-1-phosphate and the
signaling molecules inositol 1,3,4,5,6-pentakisphosphate
(InsP5) and inositol hexakisphosphate (InsP6) are in
vivo substrates for eukaryotic multiple inositol
polyphosphate phosphatase 1 (Minpp1). Phytases scavenge
phosphate from extracellular sources and are added to
animal feed while prostatic acid phosphatase (PAP) has
been used for many years as a serum marker for prostate
cancer. Recently PAP has been shown in mouse models to
suppress pain by functioning as an
ecto-5prime-nucleotidase. In vivo it dephosphorylates
extracellular adenosine monophosphate (AMP) generating
adenosine,and leading to the activation of A1-adenosine
receptors in dorsal spinal cord.
Length = 242
Score = 32.0 bits (73), Expect = 0.54
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 23/70 (32%)
Query: 359 MIRHGQYNLDGKTDAER---VLTPLGRSQALDTGKRL--------KVLDYPFNKIHV--S 405
+ RHG +R LTP GR QA + G+ + Y + +++ S
Sbjct: 8 LSRHG----------DRYPGELTPFGRQQAFELGRYFRQRYGELLLLHSYNRSDLYIRSS 57
Query: 406 TMSRAIETAQ 415
R +++AQ
Sbjct: 58 DSQRTLQSAQ 67
Score = 30.8 bits (70), Expect = 1.4
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 23/70 (32%)
Query: 43 MIRHGQYNLDGKTDAER---VLTPLGRSQALATGKRL--------KVLDYPFNKIHV--S 89
+ RHG +R LTP GR QA G+ + Y + +++ S
Sbjct: 8 LSRHG----------DRYPGELTPFGRQQAFELGRYFRQRYGELLLLHSYNRSDLYIRSS 57
Query: 90 TMSRAIETAQ 99
R +++AQ
Sbjct: 58 DSQRTLQSAQ 67
>gnl|CDD|172606 PRK14116, gpmA, phosphoglyceromutase; Provisional.
Length = 228
Score = 31.8 bits (72), Expect = 0.71
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 43 MIRHGQ--YNLD----GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIE 96
+IRHGQ +NL G D + L+ G +A G+ +K F++ + S ++RAI+
Sbjct: 6 LIRHGQSEWNLSNQFTGWVDVD--LSEKGVEEAKKAGRLIKEAGLEFDQAYTSVLTRAIK 63
Query: 97 T 97
T
Sbjct: 64 T 64
Score = 30.7 bits (69), Expect = 1.3
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 359 MIRHGQ--YNLD----GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIE 412
+IRHGQ +NL G D + L+ G +A G+ +K F++ + S ++RAI+
Sbjct: 6 LIRHGQSEWNLSNQFTGWVDVD--LSEKGVEEAKKAGRLIKEAGLEFDQAYTSVLTRAIK 63
Query: 413 T 413
T
Sbjct: 64 T 64
>gnl|CDD|215860 pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch
2). The histidine phosphatase superfamily is so named
because catalysis centres on a conserved His residue
that is transiently phosphorylated during the catalytic
cycle. Other conserved residues contribute to a
'phosphate pocket' and interact with the phospho group
of substrate before, during and after its transfer to
the His residue. Structure and sequence analyses show
that different families contribute different additional
residues to the 'phosphate pocket' and, more
surprisingly, differ in the position, in sequence and in
three dimensions, of a catalytically essential acidic
residue. The superfamily may be divided into two main
branches.The smaller branch 2 contains predominantly
eukaryotic proteins. The catalytic functions in members
include phytase, glucose-1-phosphatase and multiple
inositol polyphosphate phosphatase. The in vivo roles of
the mammalian acid phosphatases in branch 2 are not
fully understood, although activity against
lysophosphatidic acid and tyrosine-phosphorylated
proteins has been demonstrated.
Length = 327
Score = 31.3 bits (71), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 9/48 (18%)
Query: 377 LTPLGRSQALDTGKRLKV-------LDYPFNKIHV--STMSRAIETAQ 415
LTP GR+QA + G+ L+ YP +++++ S +R + +AQ
Sbjct: 52 LTPRGRAQAFELGRYLRQRYVGLLPDGYPPSEVYIRSSDSNRTLASAQ 99
Score = 30.5 bits (69), Expect = 2.3
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
Query: 61 LTPLGRSQALATGKRLKV-------LDYPFNKIHV--STMSRAIETAQ 99
LTP GR+QA G+ L+ YP +++++ S +R + +AQ
Sbjct: 52 LTPRGRAQAFELGRYLRQRYVGLLPDGYPPSEVYIRSSDSNRTLASAQ 99
>gnl|CDD|184518 PRK14119, gpmA, phosphoglyceromutase; Provisional.
Length = 228
Score = 30.2 bits (68), Expect = 1.8
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 41 IFMIRHGQYNLDGK---TDAERV-LTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIE 96
+ + RHGQ + K T E V L+ G ++A G++++ + + S ++RA++
Sbjct: 4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALD 63
Query: 97 TAQLISQSRSQ 107
T I Q
Sbjct: 64 TTHYILTESKQ 74
Score = 29.5 bits (66), Expect = 3.4
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 357 IFMIRHGQYNLDGK---TDAERV-LTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIE 412
+ + RHGQ + K T E V L+ G ++A G++++ + + S ++RA++
Sbjct: 4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALD 63
Query: 413 TAQLI 417
T I
Sbjct: 64 TTHYI 68
>gnl|CDD|233136 TIGR00805, oat, sodium-independent organic anion transporter. The
Organo Anion Transporter (OAT) Family (TC
2.A.60)Proteins of the OAT family catalyze the
Na+-independent facilitated transport of organic anions
such as bromosulfobromophthalein and prostaglandins as
well as conjugated and unconjugated bile acids
(taurocholate and cholate, respectively). These
transporters have been characterized in mammals, but
homologues are present in C. elegans and A. thaliana.
Some of the mammalian proteins exhibit a high degree of
tissue specificity. For example, the rat OAT is found at
high levels in liver and kidney and at lower levels in
other tissues. These proteins possess 10-12 putative
a-helical transmembrane spanners. They may catalyze
electrogenic anion uniport or anion exchange.
Length = 633
Score = 29.7 bits (67), Expect = 4.7
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 248 GRVTLRIYGDVGHMNPDKMTSTS 270
G L+IY D G +N + + T
Sbjct: 228 GSFCLQIYVDTGSVNTEDVILTP 250
Score = 28.9 bits (65), Expect = 7.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 297 GRVTLRIYGDVGHMNPDKMTST 318
G L+IY D G +N + + T
Sbjct: 228 GSFCLQIYVDTGSVNTEDVILT 249
>gnl|CDD|193501 cd03880, M28_QC_like, M28 Zn-Peptidase Glutaminyl Cyclase.
Peptidase M28 family; Glutaminyl Cyclase (QC; EC
2.3.2.5) subfamily. QC is involved in N-terminal
glutamine cyclization of many endocrine peptides and is
typically abundant in brain tissue. N-terminal glutamine
residue cyclization is an important post-translational
event in the processing of numerous bioactive proteins,
including neuropeptides, hormones, and cytokines during
their maturation in the secretory pathway. The
N-terminal pGlu protects them from exopeptidase
degradation and/or enables them to have proper
conformation for binding to the receptors. QCs are
highly conserved from yeast to human. In humans, several
genetic diseases, such as osteoporosis, appear to result
from mutations of the QC gene. N-terminal glutamate
cyclization into pyroglutamate (pGlu) is a reaction that
may be related to the formation of several
plaque-forming peptides, such as amyloid-(A) peptides
and collagen-like Alzheimer amyloid plaque component,
which play a pivotal role in Alzheimer's disease.
Length = 304
Score = 29.1 bits (66), Expect = 4.9
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 169 HWQPEVHQFFQDGPRIEAAFRNFFHRADPSQEHDSYELLVCH 210
W E+ F + P E F N +P Y +L H
Sbjct: 50 GWTVELDNFTEKTPIGEVTFTNIIATLNPP--APRYLVLAAH 89
Score = 29.1 bits (66), Expect = 4.9
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 446 HWQPEVHQFFQDGPRIEAAFRNFFHRADPSQEHDSYELLVCH 487
W E+ F + P E F N +P Y +L H
Sbjct: 50 GWTVELDNFTEKTPIGEVTFTNIIATLNPP--APRYLVLAAH 89
>gnl|CDD|184519 PRK14120, gpmA, phosphoglyceromutase; Provisional.
Length = 249
Score = 28.5 bits (64), Expect = 8.9
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 43 MIRHGQ-----YNL-DGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIE 96
++RHG+ NL G D + LT G ++A G+ L + ++ S + RAI
Sbjct: 9 LLRHGESEWNAKNLFTGWVDVD--LTEKGEAEAKRGGELLAEAGVLPDVVYTSLLRRAIR 66
Query: 97 TAQL 100
TA L
Sbjct: 67 TANL 70
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.413
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,806,301
Number of extensions: 2624054
Number of successful extensions: 2384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2346
Number of HSP's successfully gapped: 97
Length of query: 515
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 414
Effective length of database: 6,457,848
Effective search space: 2673549072
Effective search space used: 2673549072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.4 bits)