RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13009
(515 letters)
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate
mutase family member 5, BXLBV68, MGC protein, structural
genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo
sapiens} PDB: 3o0t_A
Length = 202
Score = 226 bits (578), Expect = 5e-72
Identities = 118/236 (50%), Positives = 143/236 (60%), Gaps = 39/236 (16%)
Query: 34 QSKAVRNIFMIRHGQYNLDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSR 93
++KA R+IF+IRH QY++DG + +R LTPLGR QA TG RL L FNKI S+M+R
Sbjct: 6 KAKATRHIFLIRHSQYHVDGSLEKDRTLTPLGREQAELTGLRLASLGLKFNKIVHSSMTR 65
Query: 94 AIETAQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPDVPVEQCA 153
A IET +IS+ LP V
Sbjct: 66 A---------------------------------------IETTDIISRHLPGVCKVSTD 86
Query: 154 LLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADPSQEHDSYELLVCHANV 213
LL EGAP+ PDPPV HW+PE Q+++DG RIEAAFRN+ HRAD QE DSYE+ +CHANV
Sbjct: 87 LLREGAPIEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADARQEEDSYEIFICHANV 146
Query: 214 IRYFVCRSMQFPAEAWLRFSLYHASITWLQIYPNGRVTLRIYGDVGHMNPDKMTST 269
IRY VCR++QFP E WLR SL + SIT L I PNGRV LR GD G M PDK+T +
Sbjct: 147 IRYIVCRALQFPPEGWLRLSLNNGSITHLVIRPNGRVALRTLGDTGFMPPDKITRS 202
Score = 186 bits (473), Expect = 2e-56
Identities = 89/149 (59%), Positives = 109/149 (73%)
Query: 350 QSKAVRNIFMIRHGQYNLDGKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSR 409
++KA R+IF+IRH QY++DG + +R LTPLGR QA TG RL L FNKI S+M+R
Sbjct: 6 KAKATRHIFLIRHSQYHVDGSLEKDRTLTPLGREQAELTGLRLASLGLKFNKIVHSSMTR 65
Query: 410 AIETAQLISQSLPDVPVEQCALLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFF 469
AIET +IS+ LP V LL EGAP+ PDPPV HW+PE Q+++DG RIEAAFRN+
Sbjct: 66 AIETTDIISRHLPGVCKVSTDLLREGAPIEPDPPVSHWKPEAVQYYEDGARIEAAFRNYI 125
Query: 470 HRADPSQEHDSYELLVCHANVIRYFVCRI 498
HRAD QE DSYE+ +CHANVIRY VCR
Sbjct: 126 HRADARQEEDSYEIFICHANVIRYIVCRA 154
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural
genomics, isomerase, structural GE consortium, SGC;
2.40A {Plasmodium falciparum}
Length = 214
Score = 206 bits (525), Expect = 8e-64
Identities = 80/241 (33%), Positives = 117/241 (48%), Gaps = 40/241 (16%)
Query: 28 KDEKPVQSKAVRNIFMIRHGQYNLDGKTD-AERVLTPLGRSQALATGKRLKVLDYPFNKI 86
++ Q ++I ++RHGQY K D + LT G QA TGK+LK +
Sbjct: 11 RENLYFQGNTTKHIILVRHGQYERRYKDDENSKRLTKEGCKQADITGKKLKDI------- 63
Query: 87 HVSTMSRAIETAQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPD 146
+ + + I+ S M RA ETA +IS+ PD
Sbjct: 64 ------------------------------LNNKKVSVIYHSDMIRAKETANIISKYFPD 93
Query: 147 VPVEQCALLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADPSQEHDSYEL 206
+ L EG P PDP H + + + +D RI A+ +F++ PS + D Y+L
Sbjct: 94 ANLINDPNLNEGTPYLPDPLPRHSKFDAQKIKEDNKRINKAYETYFYK--PSGDEDEYQL 151
Query: 207 LVCHANVIRYFVCRSMQFPAEAWLRFSLYHASITWLQIYPNGRVTLRIYGDVGHMNPDKM 266
++CH NVIRYF+CR++Q P AWLRFS Y+ ITWL + G V LR +G V H+ + +
Sbjct: 152 VICHGNVIRYFLCRALQIPLFAWLRFSSYNCGITWLVLDDEGSVVLREFGSVSHLPFESV 211
Query: 267 T 267
T
Sbjct: 212 T 212
Score = 165 bits (419), Expect = 2e-48
Identities = 61/169 (36%), Positives = 90/169 (53%), Gaps = 5/169 (2%)
Query: 344 KDEKPVQSKAVRNIFMIRHGQYNLDGKTD-AERVLTPLGRSQALDTGKRLKVL--DYPFN 400
++ Q ++I ++RHGQY K D + LT G QA TGK+LK + + +
Sbjct: 11 RENLYFQGNTTKHIILVRHGQYERRYKDDENSKRLTKEGCKQADITGKKLKDILNNKKVS 70
Query: 401 KIHVSTMSRAIETAQLISQSLPDVPVEQCALLEEGAPVPPDPPVGHWQPEVHQFFQDGPR 460
I+ S M RA ETA +IS+ PD + L EG P PDP H + + + +D R
Sbjct: 71 VIYHSDMIRAKETANIISKYFPDANLINDPNLNEGTPYLPDPLPRHSKFDAQKIKEDNKR 130
Query: 461 IEAAFRNFFHRADPSQEHDSYELLVCHANVIRYFVCRIISFKLKYSKAF 509
I A+ +F++ PS + D Y+L++CH NVIRYF+CR + L F
Sbjct: 131 INKAYETYFYK--PSGDEDEYQLVICHGNVIRYFLCRALQIPLFAWLRF 177
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM
homolog; 1.69A {Bacillus stearothermophilus} SCOP:
c.60.1.1 PDB: 1h2f_A* 1ebb_A
Length = 207
Score = 90.7 bits (226), Expect = 4e-21
Identities = 48/251 (19%), Positives = 84/251 (33%), Gaps = 81/251 (32%)
Query: 41 IFMIRHGQ--YNLDGK----TDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRA 94
+++ RHG+ +N++ + D+ LT GR A+ GKRL+ I+ ST RA
Sbjct: 4 LYLTRHGETKWNVERRMQGWQDSP--LTEKGRQDAMRLGKRLE--AVELAAIYTSTSGRA 59
Query: 95 IETAQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPDVPVEQCAL 154
+ETA+++ R + +RL+ +
Sbjct: 60 LETAEIVRGGRLIPIYQDERLREIHL---------------------------------- 85
Query: 155 LEEGAPVPPDPPVGHWQ-----------PEVHQFFQDGPRIEAA-----FRNFFHRADP- 197
G W+ P F P + A F + RA
Sbjct: 86 -------------GDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEA 132
Query: 198 ----SQEHDSYE-LLVCHANVIRYFVCRSMQFPAEAWLRFS-LYHASITWLQIYPNGRVT 251
H+ L+V H V++ + P + +Y S+T ++ G
Sbjct: 133 VQSIVDRHEGETVLIVTHGVVLKTLMAAFKDTPLDHLWSPPYMYGTSVTIIE-VDGGTFH 191
Query: 252 LRIYGDVGHMN 262
+ + GDV H+
Sbjct: 192 VAVEGDVSHIE 202
Score = 78.4 bits (194), Expect = 7e-17
Identities = 40/170 (23%), Positives = 67/170 (39%), Gaps = 40/170 (23%)
Query: 357 IFMIRHGQ--YNLDGK----TDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRA 410
+++ RHG+ +N++ + D+ LT GR A+ GKRL+ I+ ST RA
Sbjct: 4 LYLTRHGETKWNVERRMQGWQDSP--LTEKGRQDAMRLGKRLE--AVELAAIYTSTSGRA 59
Query: 411 IETAQLISQSLPDVPVEQCALLEEGAPVPPDPPVGHWQ-----------PEVHQFFQDGP 459
+ETA+++ +P+ Q L E +G W+ P F P
Sbjct: 60 LETAEIVRGGR-LIPIYQDERLREIH-------LGDWEGKTHDEIRQMDPIAFDHFWQAP 111
Query: 460 RIEAA-----FRNFFHRADP-----SQEHDSYE-LLVCHANVIRYFVCRI 498
+ A F + RA H+ L+V H V++ +
Sbjct: 112 HLYAPQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAAF 161
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate
mutase, structural genomics, PSI, structure initiative;
2.20A {Mycobacterium tuberculosis}
Length = 208
Score = 90.0 bits (224), Expect = 7e-21
Identities = 49/246 (19%), Positives = 83/246 (33%), Gaps = 77/246 (31%)
Query: 41 IFMIRHGQ--YNLDGK----TDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRA 94
+ ++RHG+ ++ G+ T+ E LT GR+QA G+ L L+ + S R
Sbjct: 13 LLLLRHGETAWSTLGRHTGGTEVE--LTDTGRTQAELAGQLLGELELDDPIVICSPRRRT 70
Query: 95 IETAQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPDVPVEQCAL 154
++TA+L + ++ L DY
Sbjct: 71 LDTAKLAGLTVNE---VTGLLAEWDY---------------------------------- 93
Query: 155 LEEGAPVPPDPPVGHWQ-----------PEVHQFFQDGPRIEAAFRNFFHRADP-----S 198
G ++ P+ + P E + RAD
Sbjct: 94 -------------GSYEGLTTPQIRESEPDWLVWTHGCPAGE-SVAQVNDRADSAVALAL 139
Query: 199 QEHDSYELL-VCHANVIRYFVCRSMQFPAEAWLRFSLYHASITWLQIYPNGRVTLRIYGD 257
+ S ++L V H + R + R +Q P RF++ ASI + +G L + G
Sbjct: 140 EHMSSRDVLFVSHGHFSRAVITRWVQLPLAEGSRFAMPTASIGICG-FEHGVRQLAVLGL 198
Query: 258 VGHMNP 263
GH P
Sbjct: 199 TGHPQP 204
Score = 73.8 bits (182), Expect = 3e-15
Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 37/166 (22%)
Query: 357 IFMIRHGQ--YNLDGK----TDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRA 410
+ ++RHG+ ++ G+ T+ E LT GR+QA G+ L L+ + S R
Sbjct: 13 LLLLRHGETAWSTLGRHTGGTEVE--LTDTGRTQAELAGQLLGELELDDPIVICSPRRRT 70
Query: 411 IETAQLISQSLPDVPVEQCALLEEGAPVPPDPPVGHWQ-----------PEVHQFFQDGP 459
++TA+L ++ +V L E G ++ P+ + P
Sbjct: 71 LDTAKLAGLTVNEVTGL---LAEWD--------YGSYEGLTTPQIRESEPDWLVWTHGCP 119
Query: 460 RIEAAFRNFFHRADP-----SQEHDSYE-LLVCHANVIRYFVCRII 499
E + RAD + S + L V H + R + R +
Sbjct: 120 AGE-SVAQVNDRADSAVALALEHMSSRDVLFVSHGHFSRAVITRWV 164
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; 2.80A {Vibrio parahaemolyticus}
Length = 213
Score = 79.2 bits (196), Expect = 4e-17
Identities = 36/242 (14%), Positives = 78/242 (32%), Gaps = 79/242 (32%)
Query: 40 NIFMIRHGQYNLD----GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAI 95
NI+++RHG+ + G+TD + + + Q A + K Y I S +SR
Sbjct: 7 NIYLMRHGKVDAAPGLHGQTDLK--VKEAEQQQI-AMAWKTK--GYDVAGIISSPLSRCH 61
Query: 96 ETAQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPDVPVEQCALL 155
+ AQ++++ + + T L+ +D+
Sbjct: 62 DLAQILAEQQLLPMTTEDDLQEMDF----------------------------------- 86
Query: 156 EEGAPVPPDPPVGHWQ-----------PEVHQFFQDGPRIEA----AFRNFFHRADP--- 197
G + ++ F+Q + F R
Sbjct: 87 ------------GDFDGMPFDLLTEHWKKLDAFWQSPAHHSLPNAESLSTFSQRVSRAWS 134
Query: 198 --SQEHDSYELLVCHANVIRYFVCRSMQFPA---EAWLRFSLYHASITWLQIYPNGRVTL 252
+ + L+V H VIR + + + + ++ +AS+T + I + ++
Sbjct: 135 QIINDINDNLLIVTHGGVIRIILAHVLGVDWRNPQWYSTLAIGNASVTHITITIDDQIYA 194
Query: 253 RI 254
+
Sbjct: 195 SV 196
Score = 70.4 bits (173), Expect = 5e-14
Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 37/178 (20%)
Query: 356 NIFMIRHGQYNLD----GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAI 411
NI+++RHG+ + G+TD + + + Q + K Y I S +SR
Sbjct: 7 NIYLMRHGKVDAAPGLHGQTDLK--VKEAEQQQIA-MAWKTK--GYDVAGIISSPLSRCH 61
Query: 412 ETAQLISQSLPDVPVEQCALLEEGAPVPPDPPVGHWQ-----------PEVHQFFQDGPR 460
+ AQ++++ +P+ L+E G + ++ F+Q
Sbjct: 62 DLAQILAEQQ-LLPMTTEDDLQEMD-------FGDFDGMPFDLLTEHWKKLDAFWQSPAH 113
Query: 461 IEA----AFRNFFHRADP-----SQEHDSYELLVCHANVIRYFVCRIISFKLKYSKAF 509
+ F R + + L+V H VIR + ++ + + +
Sbjct: 114 HSLPNAESLSTFSQRVSRAWSQIINDINDNLLIVTHGGVIRIILAHVLGVDWRNPQWY 171
>3r7a_A Phosphoglycerate mutase, putative; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE EPE; 1.84A {Bacillus anthracis}
Length = 237
Score = 75.8 bits (187), Expect = 9e-16
Identities = 42/241 (17%), Positives = 73/241 (30%), Gaps = 48/241 (19%)
Query: 40 NIFMIRHGQ--YNLDGK----TDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSR 93
+++ RHG+ N + + D+ L G A G LK D F + S R
Sbjct: 15 TLYVTRHGKTILNTNHRAQGWADSP--LVEKGVEVATNLGTGLK--DIHFMNAYSSDSGR 70
Query: 94 AIETAQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIE------TAQLISQSLPDV 147
AIETA L+ LK + K+ + + E + + V
Sbjct: 71 AIETANLV-------------LKYSEQS--KLKLEQRKKLRELNFGIFEGEKLDNMWDAV 115
Query: 148 PVEQCALLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAA------FRNFFHRADPSQEH 201
E V + E + +
Sbjct: 116 GKAAGVTSPEELLKFSIQEVIDLIRAADPT----KQAEDWELFSTRIKAEIDKISEEAAK 171
Query: 202 DSYE--LLVCHANVIRYFVCRSMQFPAEAWLRFSLYHASITWLQIYPNGRVTLRIYGDVG 259
D L+V H +I + + + +AS+T + +Y +G T+ GD+
Sbjct: 172 DGGGNVLVVVHGLLITTLIEMLDSSK----TKLGVENASVTKI-VYQDGIYTVESVGDMS 226
Query: 260 H 260
+
Sbjct: 227 Y 227
Score = 72.7 bits (179), Expect = 1e-14
Identities = 34/189 (17%), Positives = 60/189 (31%), Gaps = 56/189 (29%)
Query: 356 NIFMIRHGQ--YNLDGK----TDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSR 409
+++ RHG+ N + + D+ L G A + G LK D F + S R
Sbjct: 15 TLYVTRHGKTILNTNHRAQGWADSP--LVEKGVEVATNLGTGLK--DIHFMNAYSSDSGR 70
Query: 410 AIETAQLISQSL--PDVPVEQCALL-------------EEGAPVPPDPPVGHWQPEVHQF 454
AIETA L+ + + +EQ L + E+ +F
Sbjct: 71 AIETANLVLKYSEQSKLKLEQRKKLRELNFGIFEGEKLDNMWDAVGKAAGVTSPEELLKF 130
Query: 455 FQDGPRIEAAFRNFFHRADPSQEHDSYE-------------------------LLVCHAN 489
+ ADP+++ + +E L+V H
Sbjct: 131 SIQ------EVIDLIRAADPTKQAEDWELFSTRIKAEIDKISEEAAKDGGGNVLVVVHGL 184
Query: 490 VIRYFVCRI 498
+I + +
Sbjct: 185 LITTLIEML 193
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG, function; 2.00A {Nostoc SP}
Length = 172
Score = 71.6 bits (176), Expect = 7e-15
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 19/117 (16%)
Query: 356 NIFMIRHGQ--YNLDGKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIET 413
+++IRHG G D ER LT G+ + RL L F+ I S + RA +T
Sbjct: 2 ELYLIRHGIAEAQKTGIKDEERELTQEGKQKTEKVAYRLVKLGRQFDLIVTSPLIRARQT 61
Query: 414 AQLISQSLPDVPVEQCALLEEGAPV---------PPDPP-------VGHWQPEVHQF 454
A+++ S +E+ L + P + P VGH +P + +
Sbjct: 62 AEILLASGLSCQLEESNHLAPNGNIFNWLDYWLKPKNFPENAQIAIVGH-EPCLSNW 117
Score = 61.6 bits (150), Expect = 2e-11
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 40 NIFMIRHGQ--YNLDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIET 97
+++IRHG G D ER LT G+ + RL L F+ I S + RA +T
Sbjct: 2 ELYLIRHGIAEAQKTGIKDEERELTQEGKQKTEKVAYRLVKLGRQFDLIVTSPLIRARQT 61
Query: 98 AQLISQS 104
A+++ S
Sbjct: 62 AEILLAS 68
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU
proteolysis, structural genomics, PSI protein structure
initiative; 1.80A {Agrobacterium tumefaciens str}
Length = 219
Score = 72.2 bits (177), Expect = 1e-14
Identities = 30/160 (18%), Positives = 53/160 (33%), Gaps = 21/160 (13%)
Query: 354 VRNIFMIRHGQYNLDGKTDAERV-LTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIE 412
+ I H Q +D L+ G +A + + +I S ++AIE
Sbjct: 21 GMHALYITHPQVKIDPAVPVPEWGLSERGAERAREASRLPW--AKALRRIVSSAETKAIE 78
Query: 413 TAQLISQSLPDVPVEQC-ALLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRN---- 467
TA +++++ +E A+ E P ++ FF E +F+
Sbjct: 79 TAHMLAETS-GAAIEIIEAMHENDRSATGFLPPPEFEKAADWFFAH---PEESFQGWERA 134
Query: 468 --FFHRADPS-----QEHDSYE--LLVCHANVIRYFVCRI 498
R + HD+ + V H V C I
Sbjct: 135 IDAQARIVEAVKAVLDRHDARQPIAFVGHGGVGTLLKCHI 174
Score = 65.2 bits (159), Expect = 2e-12
Identities = 31/194 (15%), Positives = 52/194 (26%), Gaps = 32/194 (16%)
Query: 38 VRNIFMIRHGQYNLDGKTDAERV-LTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIE 96
+ I H Q +D L+ G +A + +I S ++AIE
Sbjct: 21 GMHALYITHPQVKIDPAVPVPEWGLSERGAERAREASRLPW--AKALRRIVSSAETKAIE 78
Query: 97 TAQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPDVPVEQCALLE 156
TA +++++ A+ + + E + + LP E+ A
Sbjct: 79 TAHMLAETSGAAIEIIEAMH------------------ENDRSATGFLPPPEFEKAADWF 120
Query: 157 EGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADPSQEHDSYELLVCHANVIRY 216
P + RI A + R D Q V H V
Sbjct: 121 FAHP-EESFQGWERAIDAQA------RIVEAVKAVLDRHDARQP----IAFVGHGGVGTL 169
Query: 217 FVCRSMQFPAEAWL 230
C
Sbjct: 170 LKCHIEGRGISRSK 183
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio}
PDB: 3e9d_A 3e9e_A
Length = 265
Score = 72.9 bits (179), Expect = 1e-14
Identities = 33/165 (20%), Positives = 52/165 (31%), Gaps = 29/165 (17%)
Query: 355 RNIFMIRHGQ--YNLDGK-----TDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTM 407
+ ++RHG+ YN D D L+ G QA G+ LK D F + VS +
Sbjct: 4 FALTIVRHGETQYNRDKLLQGQGIDTP--LSDTGHQQAAAAGRYLK--DLHFTNVFVSNL 59
Query: 408 SRAIETAQLI---SQSLPDVPVEQCALLEE-------GAP---VPPDPPVGHWQPEVHQF 454
RAI+TA++I + + LL E G P + +
Sbjct: 60 QRAIQTAEIILGNNLHSSATEMILDPLLRERGFGVAEGRPKEHLKNMANAAGQSCRDYTP 119
Query: 455 FQDGPRIEAAFRNFFHRADPSQEHDSYELLVCHANVIRYFVCRII 499
P E R + + H + +
Sbjct: 120 ----PGGE-TLEQVKTRFKMFLKSLFQRMFEEHGSALSSVPSEAD 159
Score = 70.2 bits (172), Expect = 1e-13
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 39 RNIFMIRHGQ--YNLDGK-----TDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTM 91
+ ++RHG+ YN D D L+ G QA A G+ LK D F + VS +
Sbjct: 4 FALTIVRHGETQYNRDKLLQGQGIDTP--LSDTGHQQAAAAGRYLK--DLHFTNVFVSNL 59
Query: 92 SRAIETAQLISQSRSQA 108
RAI+TA++I + +
Sbjct: 60 QRAIQTAEIILGNNLHS 76
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase;
1.90A {Escherichia coli} PDB: 1ujb_A
Length = 161
Score = 68.1 bits (167), Expect = 8e-14
Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 17/115 (14%)
Query: 356 NIFMIRHGQYNLDGKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIETAQ 415
+F++RHG LD +D+ R LT G ++ LK ++ VS RA +T +
Sbjct: 2 QVFIMRHGDAALDAASDSVRPLTTNGCDESRLMANWLKGQKVEIERVLVSPFLRAEQTLE 61
Query: 416 LISQSLP-DVPVEQC----------ALLEEGAPVPPDPP-----VGHWQPEVHQF 454
+ L E + + + + H P V
Sbjct: 62 EVGDCLNLPSSAEVLPELTPCGDVGLVSAYLQALTNEGVASVLVISH-LPLVGYL 115
Score = 63.1 bits (154), Expect = 5e-12
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 40 NIFMIRHGQYNLDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQ 99
+F++RHG LD +D+ R LT G ++ LK ++ VS RA +T +
Sbjct: 2 QVFIMRHGDAALDAASDSVRPLTTNGCDESRLMANWLKGQKVEIERVLVSPFLRAEQTLE 61
Query: 100 LISQSRSQALATGKRLKVLD 119
+ L +VL
Sbjct: 62 EV----GDCLNLPSSAEVLP 77
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote
structure initiative; 1.75A {Saccharomyces cerevisiae}
PDB: 3lg2_A 3oi7_A* 3ll4_A*
Length = 265
Score = 70.1 bits (172), Expect = 1e-13
Identities = 47/248 (18%), Positives = 75/248 (30%), Gaps = 52/248 (20%)
Query: 41 IFMIRHGQ--YNLDGK----TDAERVLTPLGRSQALATGKRLK-----VLDYPFNKIHVS 89
++RHGQ ++ G+ TD LTP G Q L TG+ + + I S
Sbjct: 8 CIIVRHGQTEWSKSGQYTGLTDLP--LTPYGEGQMLRTGESVFRNNQFLNPDNITYIFTS 65
Query: 90 TMSRAIETAQLISQSRSQALATGKRLKVLDYPFN-KIHVSTMSRAIE----------TAQ 138
RA +T L+ LK L KI V E T +
Sbjct: 66 PRLRARQTVDLV-------------LKPLSDEQRAKIRVVVDDDLREWEYGDYEGMLTRE 112
Query: 139 LISQSLPDVPVEQCALLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNF--FHRAD 196
I + +++ E + D Q G R+ A HR
Sbjct: 113 -IIELRKSRGLDK----ERPWNIWRDGC-----ENGETTQQIGLRLSRAIARIQNLHRKH 162
Query: 197 PSQEHDSYELLVCHANVIRYFVCRSMQFPAEAWLRFSLYHASITWLQIYPNGRVTLRIYG 256
S+ S ++ H + +RYF + ++ Y + V
Sbjct: 163 QSEGRASDIMVFAHGHALRYFAAIWFGLGVQKKCETIEEIQNVK---SYDDDTVPYVKLE 219
Query: 257 DVGHMNPD 264
H+ +
Sbjct: 220 SYRHLVDN 227
Score = 64.7 bits (158), Expect = 7e-12
Identities = 38/182 (20%), Positives = 60/182 (32%), Gaps = 42/182 (23%)
Query: 357 IFMIRHGQ--YNLDGK----TDAERVLTPLGRSQALDTGKRLK-----VLDYPFNKIHVS 405
++RHGQ ++ G+ TD LTP G Q L TG+ + + I S
Sbjct: 8 CIIVRHGQTEWSKSGQYTGLTDLP--LTPYGEGQMLRTGESVFRNNQFLNPDNITYIFTS 65
Query: 406 TMSRAIETAQLI-----SQSLPDVPVEQCALLEE---GA--------PVPPDPPVGHWQP 449
RA +T L+ + + V L E G + G +
Sbjct: 66 PRLRARQTVDLVLKPLSDEQRAKIRVVVDDDLREWEYGDYEGMLTREIIELRKSRGLDKE 125
Query: 450 EVHQFFQDGP-----------RIEAAFRNF--FHRADPSQEHDSYELLVCHANVIRYFVC 496
++DG R+ A HR S+ S ++ H + +RYF
Sbjct: 126 RPWNIWRDGCENGETTQQIGLRLSRAIARIQNLHRKHQSEGRASDIMVFAHGHALRYFAA 185
Query: 497 RI 498
Sbjct: 186 IW 187
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced
glycolysis and apoptosis regulator, CAsp target,
structural genomics medical relevance; HET: MSE; 1.75A
{Homo sapiens}
Length = 275
Score = 69.8 bits (171), Expect = 2e-13
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 14/89 (15%)
Query: 356 NIFMIRHGQ--YNLDGK-----TDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMS 408
+ ++RHG+ +N + D L+ G QA G L + F S +
Sbjct: 10 ALTVVRHGETRFNKEKIIQGQGVDEP--LSETGFKQAAAAGIFLN--NVKFTHAFSSDLM 65
Query: 409 RAIETAQLI---SQSLPDVPVEQCALLEE 434
R +T I S+ D+ V+ + L E
Sbjct: 66 RTKQTMHGILERSKFCKDMTVKYDSRLRE 94
Score = 67.9 bits (166), Expect = 8e-13
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 40 NIFMIRHGQ--YNLDGK-----TDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMS 92
+ ++RHG+ +N + D L+ G QA A G L + F S +
Sbjct: 10 ALTVVRHGETRFNKEKIIQGQGVDEP--LSETGFKQAAAAGIFLN--NVKFTHAFSSDLM 65
Query: 93 RAIETAQLI 101
R +T I
Sbjct: 66 RTKQTMHGI 74
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics
initiative, RSGI, structural genomics,; 1.40A {Thermus
thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A
2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A
2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A
2enw_A ...
Length = 177
Score = 63.8 bits (156), Expect = 4e-12
Identities = 32/161 (19%), Positives = 51/161 (31%), Gaps = 38/161 (23%)
Query: 357 IFMIRHGQ--YNLDGK----TDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRA 410
++++RHG+ +N +G+ TD LT G +QA L L S + RA
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLP--LTAEGEAQARRLKGALPSL-----PAFSSDLLRA 55
Query: 411 IETAQLISQSLPDVPVEQCALLEEGAPVPPDPPVGHWQ-----------PEVHQFFQDGP 459
TA+L L E G + E FQ
Sbjct: 56 RRTAELA-----GFSPRLYPELREIH-------FGALEGALWETLDPRYKEALLRFQGFH 103
Query: 460 RIEA-AFRNFFHRADPS-QEHDSYELLVCHANVIRYFVCRI 498
+ F R + + +L H V+R + +
Sbjct: 104 PPGGESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRAL 144
Score = 56.9 bits (138), Expect = 8e-10
Identities = 34/226 (15%), Positives = 56/226 (24%), Gaps = 80/226 (35%)
Query: 41 IFMIRHGQ--YNLDGK----TDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRA 94
++++RHG+ +N +G+ TD LT G +QA L L
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLP--LTAEGEAQARRLKGALPSL--------------- 45
Query: 95 IETAQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPDVPVEQCAL 154
S + RA TA+L
Sbjct: 46 -----------------------------PAFSSDLLRARRTAELA-----GFSPRLYPE 71
Query: 155 LEEGAPVPPDPPVGHWQ-----------PEVHQFFQDGPRIEA-AFRNFFHRADPS-QEH 201
L E G + E FQ + F R +
Sbjct: 72 LREIH-------FGALEGALWETLDPRYKEALLRFQGFHPPGGESLSAFQERVFRFLEGL 124
Query: 202 DSYELLVCHANVIRYFVCR---SMQFPAEAWLRFSLYHASITWLQI 244
+ +L H V+R + P + + + L +
Sbjct: 125 KAPAVLFTHGGVVRAVLRALGEDGLVPPGSAVAVDWPRRVLVRLAL 170
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 65.1 bits (158), Expect = 2e-11
Identities = 38/227 (16%), Positives = 73/227 (32%), Gaps = 50/227 (22%)
Query: 39 RNIFMIRHGQ--YNLDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIE 96
R I++ RHG+ +NL G+ + L+ G+ A A K ++ + ++ S + I+
Sbjct: 247 RTIYLCRHGENEHNLQGRIGGDSGLSSRGKKFASALSKFVEEQNLKDLRVWTSQLKSTIQ 306
Query: 97 TAQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPDVPVEQCALLE 156
TA+ + ++ E + + L +
Sbjct: 307 TAEAL----------------------RLPYEQWKALNEIDAGVCEELTYEEIRD----- 339
Query: 157 EGAPVPPDPPVGHWQPEVHQFFQD-----GPRIEAAFRNFFHRADP---SQEHDSYELLV 208
+ E QD P E ++++ R +P E L++
Sbjct: 340 ------------TYPEEYALREQDKYYYRYPTGE-SYQDLVQRLEPVIMELERQENVLVI 386
Query: 209 CHANVIRYFVCRSMQFPAEAWLRFSLYHASITWLQIYPNGRVTLRIY 255
CH V+R + + AE ++ L G IY
Sbjct: 387 CHQAVLRCLLAYFLDKSAEEMPYLKCPLHTVLKLTPVAYGCRVESIY 433
Score = 63.6 bits (154), Expect = 6e-11
Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 21/159 (13%)
Query: 355 RNIFMIRHGQ--YNLDGKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIE 412
R I++ RHG+ +NL G+ + L+ G+ A K ++ + ++ S + I+
Sbjct: 247 RTIYLCRHGENEHNLQGRIGGDSGLSSRGKKFASALSKFVEEQNLKDLRVWTSQLKSTIQ 306
Query: 413 TAQLISQSLPDVPVEQCALLEEGAP-----VPPDPPVGHWQPEVHQFFQD-----GPRIE 462
TA+ + +P EQ L E + + + E QD P E
Sbjct: 307 TAEAL-----RLPYEQWKALNEIDAGVCEELTYEEIRDTYPEEYALREQDKYYYRYPTGE 361
Query: 463 AAFRNFFHRADP---SQEHDSYELLVCHANVIRYFVCRI 498
++++ R +P E L++CH V+R +
Sbjct: 362 -SYQDLVQRLEPVIMELERQENVLVICHQAVLRCLLAYF 399
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus}
SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A*
1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 65.0 bits (158), Expect = 2e-11
Identities = 35/165 (21%), Positives = 59/165 (35%), Gaps = 33/165 (20%)
Query: 355 RNIFMIRHGQ--YNLDGKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIE 412
R+I++ RHG+ NL G+ + L+P GR + + + + K+ S M R I+
Sbjct: 250 RSIYLCRHGESELNLKGRIGGDPGLSPRGREFSKHLAQFISDQNIKDLKVFTSQMKRTIQ 309
Query: 413 TAQLISQSLPDVPVEQCALLEEGAPVPPDPPVGHWQ-----------PEVHQFFQDGPRI 461
TA+ + VP EQ +L E G + P
Sbjct: 310 TAEAL-----SVPYEQFKVLNEIDA-------GVCEEMTYEEIQDHYPLEFALRDQDKYR 357
Query: 462 EAA-----FRNFFHRADP---SQEHDSYELLVCHANVIRYFVCRI 498
+ + R +P E L++CH V+R +
Sbjct: 358 YRYPKGESYEDLVQRLEPVIMELERQENVLVICHQAVMRCLLAYF 402
Score = 61.6 bits (149), Expect = 2e-10
Identities = 46/250 (18%), Positives = 85/250 (34%), Gaps = 46/250 (18%)
Query: 39 RNIFMIRHGQ--YNLDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIE 96
R+I++ RHG+ NL G+ + L+P GR + + + + K+ S M R I+
Sbjct: 250 RSIYLCRHGESELNLKGRIGGDPGLSPRGREFSKHLAQFISDQNIKDLKVFTSQMKRTIQ 309
Query: 97 TAQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPDVPVEQCALLE 156
TA+ +S Q N+I T + I P
Sbjct: 310 TAEALSVPYEQ-----------FKVLNEIDAGVCEEM--TYEEIQDHYPLE--------- 347
Query: 157 EGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADP---SQEHDSYELLVCHANV 213
+ +++ P+ E ++ + R +P E L++CH V
Sbjct: 348 ----------FALRDQDKYRY--RYPKGE-SYEDLVQRLEPVIMELERQENVLVICHQAV 394
Query: 214 IRYFVCRSMQFPAEAWLRFSLYHASITWLQIYPNG----RVTLRIYGDVGHMNPDKMTST 269
+R + + AE ++ L G + L + H D+ +
Sbjct: 395 MRCLLAYFLDKAAEELPYLKCPLHTVLKLTPVAYGCKVESIFLNVAAVNTH--RDRPQNV 452
Query: 270 SMQFPAEAWL 279
+ P+E L
Sbjct: 453 DISRPSEEAL 462
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha
sandwich, structural genomics, PSI-2, prote structure
initiative; 2.35A {Agrobacterium tumefaciens str}
Length = 173
Score = 60.1 bits (146), Expect = 7e-11
Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 16/115 (13%)
Query: 355 RNIFMIRHGQ--YNLDGKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIE 412
++++RH + + G+ D +R L G ++A Y + I ST +R +
Sbjct: 9 TRVYLLRHAKAAWAAPGERDFDRGLNEAGFAEAEIIADLAADRRYRPDLILSSTAARCRQ 68
Query: 413 TAQLISQSLP-DVPVEQCALLEEGAP--------VPPDPP----VGHWQPEVHQF 454
T Q ++ + + + + VGH P +
Sbjct: 69 TTQAWQRAFNEGIDIVYIDEMYNARSETYLSLIAAQTEVQSVMLVGH-NPTMEAT 122
Score = 57.4 bits (139), Expect = 5e-10
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 39 RNIFMIRHGQ--YNLDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIE 96
++++RH + + G+ D +R L G ++A Y + I ST +R +
Sbjct: 9 TRVYLLRHAKAAWAAPGERDFDRGLNEAGFAEAEIIADLAADRRYRPDLILSSTAARCRQ 68
Query: 97 TAQLISQS 104
T Q ++
Sbjct: 69 TTQAWQRA 76
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase;
1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Length = 273
Score = 62.1 bits (150), Expect = 7e-11
Identities = 32/215 (14%), Positives = 69/215 (32%), Gaps = 24/215 (11%)
Query: 45 RHGQYNLDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQS 104
R D + D L+ G QA G+ L + S R ++TA+ I +
Sbjct: 53 RRSNGIKDFENDPP--LSSCGIFQARLAGEALLDSGVRVTAVFASPALRCVQTAKHILEE 110
Query: 105 RSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPDVPVEQCALLEEGAPVPPD 164
R++ + + K S + T + + ++ +V ++ P
Sbjct: 111 LKLEKKLKIRVEPGIFEWMKWEASKATLTFLTLEELKEANFNVDLD---------YRPAL 161
Query: 165 PPVGHWQPE-VHQFFQDGPRIEAAFRNFFHRADPSQEHDSYELLVCHANVIRYFVCRSMQ 223
P E Q+ + R + + Q+ L+V H++ + +
Sbjct: 162 PRCSLMPAESYDQYVE---RCAVSMGQIINTCP--QDMGIT-LIVSHSSALDSCTRPLLG 215
Query: 224 FPAEAWLRFS-----LYHASITWLQIYP-NGRVTL 252
P F+ + + + + +G+ L
Sbjct: 216 LPPRECGDFAQLVRKIPSLGMCFCEENREDGKWDL 250
Score = 59.0 bits (142), Expect = 6e-10
Identities = 23/176 (13%), Positives = 50/176 (28%), Gaps = 31/176 (17%)
Query: 361 RHGQYNLDGKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIETAQLISQS 420
R D + D L+ G QA G+ L + S R ++TA+ I +
Sbjct: 53 RRSNGIKDFENDPP--LSSCGIFQARLAGEALLDSGVRVTAVFASPALRCVQTAKHILEE 110
Query: 421 L---PDVPVEQCALLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADPSQE 477
L + + + E + + + + ++ +R
Sbjct: 111 LKLEKKLKIRVEPGIFEWMKWEASKATLTF-LTLEELKEANFNVDLDYRPALP-RCSLMP 168
Query: 478 HDSYE------------------------LLVCHANVIRYFVCRIISFKLKYSKAF 509
+SY+ L+V H++ + ++ + F
Sbjct: 169 AESYDQYVERCAVSMGQIINTCPQDMGITLIVSHSSALDSCTRPLLGLPPRECGDF 224
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM,
hydrolase; 1.76A {Bombyx mori}
Length = 263
Score = 60.9 bits (147), Expect = 1e-10
Identities = 31/206 (15%), Positives = 60/206 (29%), Gaps = 61/206 (29%)
Query: 351 SKAVRNIFMIRHGQ-------------------YNLDGKTDAERV--------------L 377
SK+ R +F +RHG+ D + L
Sbjct: 1 SKSRRWVFALRHGERVDLTYGPWVPHCFENDTYVRKDLNLPLKLAHRAGGKGGYVKDTPL 60
Query: 378 TPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSL---PDVPVEQC-ALLE 433
T LG QA G+ +++ ++ S R +ETAQ L P V ++ L E
Sbjct: 61 TRLGWFQAQLVGEGMRMAGVSIKHVYASPALRCVETAQGFLDGLRADPSVKIKVEPGLFE 120
Query: 434 EGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADPS------------------ 475
P + + + G ++ ++ + +
Sbjct: 121 FKNWHMPKGI--DF-MTPIELCKAGLNVDMTYKPYVEMDASAETMDEFFKRGEVAMQAAV 177
Query: 476 QEHDSYE---LLVCHANVIRYFVCRI 498
+ + + + HA + V +
Sbjct: 178 NDTEKDGGNVIFIGHAITLDQMVGAL 203
Score = 59.3 bits (143), Expect = 5e-10
Identities = 32/224 (14%), Positives = 64/224 (28%), Gaps = 42/224 (18%)
Query: 35 SKAVRNIFMIRHGQYNLDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRA 94
SK+ R +F +RHG ERV G V + ++ +
Sbjct: 1 SKSRRWVFALRHG----------ERVDLTYGPWVPHCFENDTYVRKDLNLPLKLAHRAGG 50
Query: 95 IETAQ----LISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSL---PDV 147
L QA G+ +++ ++ S R +ETAQ L P V
Sbjct: 51 KGGYVKDTPLTRLGWFQAQLVGEGMRMAGVSIKHVYASPALRCVETAQGFLDGLRADPSV 110
Query: 148 PVEQC-ALLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADPS-------- 198
++ L E P + + + G ++ ++ + +
Sbjct: 111 KIKVEPGLFEFKNWHMPKGI--DF-MTPIELCKAGLNVDMTYKPYVEMDASAETMDEFFK 167
Query: 199 ----------QEHDSYE---LLVCHANVIRYFVCRSMQFPAEAW 229
+ + + + HA + V + +
Sbjct: 168 RGEVAMQAAVNDTEKDGGNVIFIGHAITLDQMVGALHRLRDDME 211
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR
{Schizosaccharomyces pombe} SCOP: c.60.1.1
Length = 211
Score = 59.8 bits (146), Expect = 2e-10
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 351 SKAVRNIFMIRHGQ--YNLD----GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHV 404
A + + RHG+ +N G D L+ G +A G+RLK Y F+
Sbjct: 4 EAAPNLLVLTRHGESEWNKLNLFTGWKDPA--LSETGIKEAKLGGERLKSRGYKFDIAFT 61
Query: 405 STMSRAIETAQLISQSL--PDVPVE 427
S + RA +T Q+I + + P++
Sbjct: 62 SALQRAQKTCQIILEEVGEPNLETI 86
Score = 58.7 bits (143), Expect = 4e-10
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 35 SKAVRNIFMIRHGQ--YNLD----GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHV 88
A + + RHG+ +N G D L+ G +A G+RLK Y F+
Sbjct: 4 EAAPNLLVLTRHGESEWNKLNLFTGWKDPA--LSETGIKEAKLGGERLKSRGYKFDIAFT 61
Query: 89 STMSRAIETAQLI 101
S + RA +T Q+I
Sbjct: 62 SALQRAQKTCQII 74
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.6 bits (146), Expect = 7e-10
Identities = 87/506 (17%), Positives = 150/506 (29%), Gaps = 127/506 (25%)
Query: 53 GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSRSQALATG 112
GKT + AL KV KI + ++ Q L
Sbjct: 162 GKT----WV-------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML--QKL--- 205
Query: 113 KRLKVLDYPFNKI--HVSTMSRAIETAQ------LISQSLPDVPVEQCALLEEGAPVPPD 164
L +D + H S + I + Q L S+ + LL V +
Sbjct: 206 --LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN------CLL-----VLLN 252
Query: 165 PPVGHWQPEVHQFFQDGPRI--------EAAFRNFFHRADPSQEH--------DSYELLV 208
V + F +I F + S +H + LL
Sbjct: 253 --V--QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL- 307
Query: 209 CHANVIRYFVCRSMQFPAEAWLRFSLYHASITWLQIYPNGRVTLRIYGDVGHMNPDKMTS 268
++Y CR P E L + SI I +G T + H+N DK+T+
Sbjct: 308 -----LKYLDCRPQDLPREV-LTTNPRRLSIIAESI-RDGLATWDNWK---HVNCDKLTT 357
Query: 269 TSMQF-----PAEAWLRFSLYHASITWLQIYPNG----RVTLRIY-GDVGHMNPDKMTST 318
PAE R ++ L ++P + L + DV + + +
Sbjct: 358 IIESSLNVLEPAE--YR-KMFDR----LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 319 REGEYLV--HPKKRSIVPEGLDL-LKGTKDEKPVQSKAVRNIFMIRHGQYNLDGKTDAER 375
LV PK+ +I + L LK + + +++ + YN+ D++
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-------HYNIPKTFDSDD 463
Query: 376 VLTPLGRSQALDTGKRLKVLDYPFNKI--HVSTMSRAIETAQLISQSLPDVPVEQCALLE 433
++ P LD Y ++ I H+ + E L D + +
Sbjct: 464 LIPP-----YLD--------QYFYSHIGHHLKNIEHP-ERMTLFRMVFLDFRFLEQKIRH 509
Query: 434 EGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADPSQEH--DSYE--LLVCHAN 489
+ G + Q ++ + DP E ++ L N
Sbjct: 510 DS---TAWNASGSILNTLQQL--------KFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 490 VIRYFVCRIISFKLKYSKAFIANSEA 515
+I ++ L I EA
Sbjct: 559 LICSKYTDLLRIALMAEDEAIFE-EA 583
Score = 57.6 bits (138), Expect = 8e-09
Identities = 52/414 (12%), Positives = 112/414 (27%), Gaps = 116/414 (28%)
Query: 19 EGLDLLKGTKDEKPVQSKAVRNIFMIRHGQYN-----LDGKTDAERVLTPLG-RSQALAT 72
D K +R + + Y L +A+ + L T
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSK--PYENCLLVLLNVQNAK-AWNAFNLSCKILLT 271
Query: 73 GKRLKVLDY--PFNKIHVSTMSRAI-----ETAQLISQS--------RSQALAT------ 111
+ +V D+ H+S ++ E L+ + + L T
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 112 --GKRLKVLDYP-----FNKIHVSTMSRAIETAQLISQSLPDV-PVE------QCALLEE 157
+ ++ D + ++ ++ IE+ SL + P E + ++
Sbjct: 332 IIAESIR--DGLATWDNWKHVNCDKLTTIIES------SLNVLEPAEYRKMFDRLSVFPP 383
Query: 158 GAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRA-----DPSQE----HDSYELLV 208
A +P W + N H+ P + Y L
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMV-------VVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 209 C--------HANVI-RYFVCRSMQFPAEAWLRFSLYHASITWLQIYPNGRVTLRIYGDVG 259
H +++ Y + ++ F +L Y Y +G
Sbjct: 437 VKLENEYALHRSIVDHYNIPKT----------FDSDDLIPPYLDQY--------FYSHIG 478
Query: 260 -HMNPDKMTSTSMQFPAE----AWLRFSLYHASITWLQIYP--NGRVTLRIYGD---VGH 309
H+ + F +L + H S W N L+ Y
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 310 MNPDKMTST------REGEYLVHPKKRSIVPEGLDLLKGTKDEKPVQSKAVRNI 357
+++ + + E L+ K ++ L +++ + +A + +
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIAL-----MAEDEAIFEEAHKQV 587
Score = 48.7 bits (115), Expect = 4e-06
Identities = 67/483 (13%), Positives = 128/483 (26%), Gaps = 165/483 (34%)
Query: 117 VLDYPFNKIHVSTMSRAIETAQLISQSL--PDVPVEQCALLEEGAPVPPDPPVGHW---- 170
V ++ V M ++I + + I + D V L W
Sbjct: 30 VDNFDCK--DVQDMPKSILSKEEIDHIIMSKD-AVSGTLRL-------------FWTLLS 73
Query: 171 QPE--VHQFFQDGPR-----IEAAFRNFFHRADPSQEHDSYELLVCHAN-------VIRY 216
+ E V +F ++ R + + + + PS Y +Y
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKT--EQRQPSMMTRMYI--EQRDRLYNDNQVFAKY 129
Query: 217 FVCRSMQFPAEAWLRFSLYHASITWLQIYPNGRVTLRIYGDVGH---------MNPDKMT 267
V R + LR +L ++ P V + G +G K+
Sbjct: 130 NVSRLQPYLK---LRQALL-------ELRPAKNVLI--DGVLGSGKTWVALDVCLSYKVQ 177
Query: 268 STSMQFPAEA-WLRFSLYHASITWLQIYPNGRVTLRIYGDVGHMNPDKMTSTREGEYLVH 326
+ + WL ++ T L++ L D ++ + + +
Sbjct: 178 C---KMDFKIFWLNLKNCNSPETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 327 PKKRSIV-----PEGLDLLKGTKDEKPVQSKAVRNIFMI--------RHGQY--NLDGKT 371
+ R ++ L +L VQ+ N F + R Q L T
Sbjct: 232 AELRRLLKSKPYENCLLVL----LN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 372 -------DAERVLTP----------LG------RSQALDT--------GKRLKVLDYP-- 398
LTP L + L T + ++ D
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR--DGLAT 343
Query: 399 ---FNKIHVSTMSRAIETAQLISQSLPDV-PVE------QCALLEEGAPVPPDPPVGHWQ 448
+ ++ ++ IE+ SL + P E + ++ A +P W
Sbjct: 344 WDNWKHVNCDKLTTIIES------SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 449 PEVHQFFQDGPRIEAAFRNFFHRA-----DPSQE----HDSYELLVC--------HANVI 491
+ N H+ P + Y L H +++
Sbjct: 398 DVIKSDVMV-------VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 492 -RY 493
Y
Sbjct: 451 DHY 453
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria,
glycolysis, I structural genomics consortium, SGC; 2.01A
{Cryptosporidium parvum}
Length = 267
Score = 57.2 bits (139), Expect = 2e-09
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 344 KDEKPVQSKAVRNIFMIRHGQ--YNLD----GKTDAERVLTPLGRSQALDTGKRLKVLDY 397
V + + +IRHG+ +N + G TD L+ G S+A++ G+ L +
Sbjct: 10 HSSGLVPRGSTYKLTLIRHGESEWNKENRFTGWTDVS--LSEQGVSEAIEAGRMLLEKGF 67
Query: 398 PFNKIHVSTMSRAIETAQLISQSL--PDVPVE 427
F+ ++ S + RAI T + + L + P+
Sbjct: 68 KFDVVYTSVLKRAIMTTWTVLKELGNINCPII 99
Score = 56.8 bits (138), Expect = 4e-09
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 28 KDEKPVQSKAVRNIFMIRHGQ--YNLD----GKTDAERVLTPLGRSQALATGKRLKVLDY 81
V + + +IRHG+ +N + G TD L+ G S+A+ G+ L +
Sbjct: 10 HSSGLVPRGSTYKLTLIRHGESEWNKENRFTGWTDVS--LSEQGVSEAIEAGRMLLEKGF 67
Query: 82 PFNKIHVSTMSRAIETAQLI 101
F+ ++ S + RAI T +
Sbjct: 68 KFDVVYTSVLKRAIMTTWTV 87
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural
genomics, medical STRU genomics of pathogenic protozoa,
MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Length = 258
Score = 56.4 bits (137), Expect = 4e-09
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 353 AVRNIFMIRHGQ--YNLD----GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVST 406
+ ++RHG+ +N + G TD L+ G +A+ GK LK ++ F+ ++ S
Sbjct: 10 TTYTLVLLRHGESTWNKENKFTGWTDVP--LSEKGEEEAIAAGKYLKEKNFKFDVVYTSV 67
Query: 407 MSRAIETAQLISQSL--PDVPVE 427
+ RAI TA + ++ VPV
Sbjct: 68 LKRAICTAWNVLKTADLLHVPVV 90
Score = 55.6 bits (135), Expect = 7e-09
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 37 AVRNIFMIRHGQ--YNLD----GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVST 90
+ ++RHG+ +N + G TD L+ G +A+A GK LK ++ F+ ++ S
Sbjct: 10 TTYTLVLLRHGESTWNKENKFTGWTDVP--LSEKGEEEAIAAGKYLKEKNFKFDVVYTSV 67
Query: 91 MSRAIETAQLI 101
+ RAI TA +
Sbjct: 68 LKRAICTAWNV 78
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and
gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia
coli} SCOP: c.60.1.1 PDB: 1e59_A*
Length = 249
Score = 56.0 bits (136), Expect = 5e-09
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 353 AVRNIFMIRHGQ--YNLD----GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVST 406
AV + ++RHG+ +N + G D + L+ G S+A GK LK Y F+ + S
Sbjct: 1 AVTKLVLVRHGESQWNKENRFTGWYDVD--LSEKGVSEAKAAGKLLKEEGYSFDFAYTSV 58
Query: 407 MSRAIETAQLISQSL--PDVPVE 427
+ RAI T + L +PVE
Sbjct: 59 LKRAIHTLWNVLDELDQAWLPVE 81
Score = 55.6 bits (135), Expect = 6e-09
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 37 AVRNIFMIRHGQ--YNLD----GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVST 90
AV + ++RHG+ +N + G D + L+ G S+A A GK LK Y F+ + S
Sbjct: 1 AVTKLVLVRHGESQWNKENRFTGWYDVD--LSEKGVSEAKAAGKLLKEEGYSFDFAYTSV 58
Query: 91 MSRAIETAQLI 101
+ RAI T +
Sbjct: 59 LKRAIHTLWNV 69
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.45A {Mycobacterium leprae}
Length = 268
Score = 56.1 bits (136), Expect = 6e-09
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 343 TKDEKPVQSKAVRNIFMIRHGQ--YNLD----GKTDAERVLTPLGRSQALDTGKRLKVLD 396
T+ +Q + ++RHG+ +N G D LT GR++A+ +G+ L +
Sbjct: 16 TQGPGSMQQGNTATLILLRHGESDWNARNLFTGWVDVG--LTDKGRAEAVRSGELLAEHN 73
Query: 397 YPFNKIHVSTMSRAIETAQLISQSL--PDVPVE 427
+ ++ S + RAI TA L + +PV
Sbjct: 74 LLPDVLYTSLLRRAITTAHLALDTADWLWIPVR 106
Score = 55.3 bits (134), Expect = 1e-08
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 27 TKDEKPVQSKAVRNIFMIRHGQ--YNLD----GKTDAERVLTPLGRSQALATGKRLKVLD 80
T+ +Q + ++RHG+ +N G D LT GR++A+ +G+ L +
Sbjct: 16 TQGPGSMQQGNTATLILLRHGESDWNARNLFTGWVDVG--LTDKGRAEAVRSGELLAEHN 73
Query: 81 YPFNKIHVSTMSRAIETAQLI 101
+ ++ S + RAI TA L
Sbjct: 74 LLPDVLYTSLLRRAITTAHLA 94
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET:
3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1
PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Length = 240
Score = 55.6 bits (135), Expect = 6e-09
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 359 MIRHGQ--YNLD----GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIE 412
++RHGQ +N G D + L+ G+ +A G+ LK + ++ S +SRAI+
Sbjct: 5 LVRHGQSEWNEKNLFTGWVDVK--LSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQ 62
Query: 413 TAQLISQSL--PDVPVE 427
TA + + +PV
Sbjct: 63 TANIALEKADRLWIPVN 79
Score = 54.8 bits (133), Expect = 1e-08
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 43 MIRHGQ--YNLD----GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIE 96
++RHGQ +N G D + L+ G+ +A G+ LK + ++ S +SRAI+
Sbjct: 5 LVRHGQSEWNEKNLFTGWVDVK--LSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQ 62
Query: 97 TAQLI 101
TA +
Sbjct: 63 TANIA 67
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET:
CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Length = 262
Score = 55.6 bits (135), Expect = 7e-09
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 359 MIRHGQ--YNLD----GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIE 412
+IRHG+ +NL+ G DA+ L+P G +A G+ L+ Y F+ S RAI
Sbjct: 8 LIRHGESAWNLENRFSGWYDAD--LSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIR 65
Query: 413 TAQLISQSL--PDVPVE 427
T + ++ +PV
Sbjct: 66 TLWTVLDAIDQMWLPVV 82
Score = 55.2 bits (134), Expect = 1e-08
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 43 MIRHGQ--YNLD----GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIE 96
+IRHG+ +NL+ G DA+ L+P G +A G+ L+ Y F+ S RAI
Sbjct: 8 LIRHGESAWNLENRFSGWYDAD--LSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIR 65
Query: 97 TAQLI 101
T +
Sbjct: 66 TLWTV 70
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.30A {Borrelia burgdorferi}
Length = 274
Score = 55.7 bits (135), Expect = 8e-09
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 359 MIRHGQ--YNLD----GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIE 412
++RHG+ +N + G TD + L+ G +A++ G LK Y F+ S +SRA +
Sbjct: 32 LVRHGESEWNKENLFTGWTDVK--LSDKGIDEAVEAGLLLKQEGYSFDIAFSSLLSRAND 89
Query: 413 TAQLISQSL--PDVPVE 427
T +I + L + V+
Sbjct: 90 TLNIILRELGQSYISVK 106
Score = 54.9 bits (133), Expect = 1e-08
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 43 MIRHGQ--YNLD----GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIE 96
++RHG+ +N + G TD + L+ G +A+ G LK Y F+ S +SRA +
Sbjct: 32 LVRHGESEWNKENLFTGWTDVK--LSDKGIDEAVEAGLLLKQEGYSFDIAFSSLLSRAND 89
Query: 97 TAQLI 101
T +I
Sbjct: 90 TLNII 94
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat;
phosphoglyceromutase, decode, SBRI, niaid, UWPPG,
glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia
pseudomallei} PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A*
3lnt_A
Length = 257
Score = 55.2 bits (134), Expect = 1e-08
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 359 MIRHGQ--YNLD----GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIE 412
+IRHG+ +N + G D + LT G +A G+ LK Y F+ + S + RAI
Sbjct: 14 LIRHGESTWNKENRFTGWVDVD--LTEQGNREARQAGQLLKEAGYTFDIAYTSVLKRAIR 71
Query: 413 TAQLISQSL--PDVPVE 427
T + + VPV
Sbjct: 72 TLWHVQDQMDLMYVPVV 88
Score = 54.8 bits (133), Expect = 1e-08
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 43 MIRHGQ--YNLD----GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIE 96
+IRHG+ +N + G D + LT G +A G+ LK Y F+ + S + RAI
Sbjct: 14 LIRHGESTWNKENRFTGWVDVD--LTEQGNREARQAGQLLKEAGYTFDIAYTSVLKRAIR 71
Query: 97 TAQLI 101
T +
Sbjct: 72 TLWHV 76
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate
mutase, SH3 domain binding, structural genom TBSGC;
1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Length = 265
Score = 55.3 bits (134), Expect = 1e-08
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 356 NIFMIRHGQ--YNLD----GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSR 409
++ ++RHG+ +N G D LT G+++A+ +G+ + D + ++ S + R
Sbjct: 6 SLVLLRHGESDWNALNLFTGWVDVG--LTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRR 63
Query: 410 AIETAQLISQSL--PDVPVE 427
AI TA L S +PV
Sbjct: 64 AITTAHLALDSADRLWIPVR 83
Score = 54.5 bits (132), Expect = 2e-08
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 40 NIFMIRHGQ--YNLD----GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSR 93
++ ++RHG+ +N G D LT G+++A+ +G+ + D + ++ S + R
Sbjct: 6 SLVLLRHGESDWNALNLFTGWVDVG--LTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRR 63
Query: 94 AIETAQLI 101
AI TA L
Sbjct: 64 AITTAHLA 71
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 1e-08
Identities = 90/551 (16%), Positives = 147/551 (26%), Gaps = 231/551 (41%)
Query: 4 EGEYL----VHPKKRSIVPEGLDLLKGTKDEKPVQSKAVRNIFMIRHGQYNLDGKTDAER 59
E YL +H ++ + L D V++K + I++ Y
Sbjct: 92 ENCYLEGNDIH----ALAAK----LLQENDTTLVKTKEL-----IKN--Y---------- 126
Query: 60 VLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIET--AQLIS----QSRSQALATGK 113
A KR PF+K S + RA+ AQL++ Q G
Sbjct: 127 -------ITARIMAKR------PFDKKSNSALFRAVGEGNAQLVAIFGGQ--------GN 165
Query: 114 RLKVLD-----YPFNKIHVSTMSRAIETAQLISQSLPDVPVEQCALLEEG---------- 158
+ Y + + + I+ + L ++ + +G
Sbjct: 166 TDDYFEELRDLY---QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 159 APVPPD----------PPVGHWQPEVHQFFQDGPRIEAAFRNFFHRA--DPSQEHDSYE- 205
+ P P +G V Q A + P + +
Sbjct: 223 SNTPDKDYLLSIPISCPLIG-----VIQL--------AHYVVTAKLLGFTPGELRSYLKG 269
Query: 206 LLVCHANVIRYFVCRSMQFPAEA--WLRF-SLYHASITWL--------QIYPNGRVTLRI 254
++ + AE W F +IT L + YPN + I
Sbjct: 270 ATGHSQGLV------TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 255 YGD---VGHMNPDKMTS---------------TSMQFPAEAWLRFSLYHASITWLQIYPN 296
D P M S T+ PA + SL N
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV-----------N 372
Query: 297 GR----VTLRIYGDVGHMNPDKMTSTREGEYLVHPKKRSI-VPEGLDLLKGTKDEKPVQS 351
G V+ G P + Y ++ R P GLD QS
Sbjct: 373 GAKNLVVS-------GP--PQSL-------YGLNLTLRKAKAPSGLD-----------QS 405
Query: 352 KAV---RNI-FMIR--------HGQYNLDGKTDAERVLTPLGRSQALDTGKRLKVLDYPF 399
+ R + F R H L +D + L ++ K +
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHL-LVPASD--LINKDLVKNNVSFNAKDI------- 455
Query: 400 NKIHV-STMSRAIETA---QLISQSLPDVPVEQCALLEEGAPVPPDPPVGHWQPEVHQF- 454
+I V T +++S S+ + V+ ++ PV W QF
Sbjct: 456 -QIPVYDT-----FDGSDLRVLSGSISERIVDC--IIRL--PV-------KW-ETTTQFK 497
Query: 455 ------FQDGP 459
F GP
Sbjct: 498 ATHILDF--GP 506
Score = 50.4 bits (120), Expect = 1e-06
Identities = 77/426 (18%), Positives = 125/426 (29%), Gaps = 121/426 (28%)
Query: 104 SRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQL---ISQSLPDVPVEQCALLEEGAP 160
+R L+ G L++ V T + +QL ++ LP+ P E A +E
Sbjct: 6 TRPLTLSHGS----LEHVL---LVPT-ASFFIASQLQEQFNKILPE-PTEGFAADDE--- 53
Query: 161 VPPDPP------VGH--WQPEVHQFFQDGPRIEAAFRNF---F------HRADPSQEHDS 203
P P +G+ E + Q + F + H ++
Sbjct: 54 -PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 204 YELLVCHANVIR-YF-VCRSMQFPAEAWLRFSLYHASITWLQIYPNGRVTL-RIYGDVGH 260
LV +I+ Y + P + +L+ A G L I+G G
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV-------GEGNAQLVAIFG--G- 162
Query: 261 MNPDKMTSTSMQFPAEAW---LRFSLYHASITWLQIYPNGRVTLRIYGDVGHMNPDKMTS 317
Q + + LR LY Q Y V I
Sbjct: 163 -----------QGNTDDYFEELR-DLY-------QTYH-VLVGDLI---------KFSAE 193
Query: 318 TREGEYLVHPKKRSIVPEGLDLLK--GTKDEKPVQ----SKAVR--NIFMIRHGQY---- 365
T + +GL++L+ P + S + I +I+ Y
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 366 NLDGKTDAE---RVLTPLGRSQAL---------DTGKRL-----KVLDYPFNKIHVSTMS 408
L G T E + G SQ L D+ + K + F +
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF---FIGV-- 308
Query: 409 RAIETAQLISQSLPDVPVEQCALLEEGAPVP----PDPPVGHWQPEVHQFFQDGP---RI 461
R E + SLP +E EG P P + Q V++ P ++
Sbjct: 309 RCYEAYP--NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 462 EAAFRN 467
E + N
Sbjct: 367 EISLVN 372
Score = 36.6 bits (84), Expect = 0.023
Identities = 51/308 (16%), Positives = 101/308 (32%), Gaps = 125/308 (40%)
Query: 186 AAFRNFFHRADPSQEH--DSYELLVCHANVIRYFVCRSMQFPAEAWLRFSLY-------- 235
A ++ ++RAD H D+Y + +++ P + F
Sbjct: 1640 KAAQDVWNRAD---NHFKDTYGFSI--LDIVI-------NNPVNLTIHFGGEKGKRIREN 1687
Query: 236 HASITWLQIYPNGRV-TLRIYGDVGHM-------NP-DKMTSTSMQF--PAEAWLRFSLY 284
++++ + + +G++ T +I+ ++ + +++T QF PA L
Sbjct: 1688 YSAMIF-ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT--QFTQPA-------LT 1737
Query: 285 HASITWLQIYPNGRVTLRIYGDV-------GHMNPDKMTSTREGEY-------------- 323
+ L+ G + GH S GEY
Sbjct: 1738 LMEKAAFED-------LKSKGLIPADATFAGH-------SL--GEYAALASLADVMSIES 1781
Query: 324 ---LVHPKKR-----SIVPE--------GLDLLKGTKDEKPVQSKAVRNI---FMIRHGQ 364
+V R VP G+ + + +A++ + R G
Sbjct: 1782 LVEVVF--YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW 1839
Query: 365 ------YNLDGKTDAERVLTPLGRSQALDTGKRL-KVLDYPFNKIHVSTMSRAIETAQL- 416
YN++ + V G +ALDT + VL++ K+ + I+ +L
Sbjct: 1840 LVEIVNYNVENQQ---YVAA--GDLRALDT---VTNVLNF--IKL------QKIDIIELQ 1883
Query: 417 ISQSLPDV 424
S SL +V
Sbjct: 1884 KSLSLEEV 1891
Score = 31.6 bits (71), Expect = 0.78
Identities = 23/146 (15%), Positives = 41/146 (28%), Gaps = 45/146 (30%)
Query: 313 DKMTSTREGEYLVHPKKRSIV---PEGLDLLKGTKDEKPVQSKAVRNIFMIRHGQYNLDG 369
D G ++ IV P L + G + + K +R + + +DG
Sbjct: 1650 DNHFKDTYGFSILD-----IVINNPVNLTIHFGGE-----KGKRIRENYSAMIFETIVDG 1699
Query: 370 KTDAERVLTPLGRSQALDTGKRLKVLDYPFN----KIHVSTMSRAIETAQ----LISQSL 421
K E++ + Y F + +T + Q L+
Sbjct: 1700 KLKTEKIFKEINE----------HSTSYTFRSEKGLLS-AT-----QFTQPALTLME--- 1740
Query: 422 PDVPVEQCALLEEGAPVPPDPPV-GH 446
L+ +P D GH
Sbjct: 1741 ----KAAFEDLKSKGLIPADATFAGH 1762
Score = 31.2 bits (70), Expect = 1.0
Identities = 35/185 (18%), Positives = 58/185 (31%), Gaps = 68/185 (36%)
Query: 336 GLDLLKGTKDEKPVQSKAVRNIFMIRHGQYNLDGKTDAERVLTP-LGRSQALDTGKRLKV 394
G+DL K SKA ++++ A+ G S LD V
Sbjct: 1632 GMDLYK--------TSKAAQDVW------------NRADNHFKDTYGFS-ILDI-----V 1665
Query: 395 LDYPFNK-IHVSTM-SRAIE--TAQLISQSLPDVPVEQCALLEEGAPVPPDPPVGHWQPE 450
++ P N IH + I + +I +++ D ++ + +E +
Sbjct: 1666 INNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS--EK 1723
Query: 451 VH----QFFQDGPRI----EAAFR-----------NFF--HRADPSQEHDS---YELLVC 486
QF Q P + +AAF F H S Y L
Sbjct: 1724 GLLSATQFTQ--PALTLMEKAAFEDLKSKGLIPADATFAGH---------SLGEYAALAS 1772
Query: 487 HANVI 491
A+V+
Sbjct: 1773 LADVM 1777
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A
{Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A*
2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Length = 267
Score = 54.9 bits (133), Expect = 1e-08
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 353 AVRNIFMIRHGQ--YNLD----GKTDAERVLTPLGRSQALDTGKRLKVLDYPFNKIHVST 406
+ + M+RHG+ +N + D + L G +A + GK+LK L++ F+ + S
Sbjct: 2 SKYKLIMLRHGEGAWNKENRFCSWVDQK--LNSEGMEEARNCGKQLKALNFEFDLVFTSV 59
Query: 407 MSRAIETAQLISQSL--PDVPVE 427
++R+I TA LI + L VPVE
Sbjct: 60 LNRSIHTAWLILEELGQEWVPVE 82
Score = 54.9 bits (133), Expect = 1e-08
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 37 AVRNIFMIRHGQ--YNLD----GKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVST 90
+ + M+RHG+ +N + D + L G +A GK+LK L++ F+ + S
Sbjct: 2 SKYKLIMLRHGEGAWNKENRFCSWVDQK--LNSEGMEEARNCGKQLKALNFEFDLVFTSV 59
Query: 91 MSRAIETAQLI 101
++R+I TA LI
Sbjct: 60 LNRSIHTAWLI 70
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1,
signaling protein, low PH, alternative splicing,
cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus}
PDB: 2ikq_A 2h0q_A
Length = 264
Score = 51.2 bits (122), Expect = 2e-07
Identities = 24/159 (15%), Positives = 50/159 (31%), Gaps = 25/159 (15%)
Query: 377 LTPLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSL---PDVPV------E 427
+T G QA G+ L + + ++ S R ++TA I + L + +
Sbjct: 58 ITVFGCMQARLVGEALLESNTVIDHVYCSPSLRCVQTAHNILKGLQQDNHLKIRVEPGLF 117
Query: 428 QCALLEEGAPVPPDPPVGH---WQPEVHQFFQDGPRIE------------AAFRNFFHR- 471
+ G+ +P P V ++ +
Sbjct: 118 EWTKWVAGSTLPAWIPPSELAAANLSVDTTYRPHIPVSKLAISESYDTYINRSFQVTKEI 177
Query: 472 ADPSQEHDSYELLVCHANVIRYFVCRIISFKLKYSKAFI 510
+ + L+V HA+ + C++ + SK F+
Sbjct: 178 ISECKSKGNNILIVAHASSLEACTCQLQGLSPQNSKDFV 216
Score = 49.2 bits (117), Expect = 9e-07
Identities = 34/227 (14%), Positives = 65/227 (28%), Gaps = 31/227 (13%)
Query: 39 RNIFMIRHGQYNLDGKTDAERVLTPLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIET- 97
R +F+ RHG+ + D L + L+ P + S R E
Sbjct: 1 RCLFVCRHGE-----RMDVVFGKYWLSQCFDAKGRYIRTNLNMPHSLPQRSGGFRDYEKD 55
Query: 98 AQLISQSRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSL---PDVPV----- 149
A + QA G+ L + + ++ S R ++TA I + L + +
Sbjct: 56 APITVFGCMQARLVGEALLESNTVIDHVYCSPSLRCVQTAHNILKGLQQDNHLKIRVEPG 115
Query: 150 -EQCALLEEGAPVPPDPPVGH---WQPEVHQFFQDGPRIE------------AAFRNFFH 193
+ G+ +P P V ++ +
Sbjct: 116 LFEWTKWVAGSTLPAWIPPSELAAANLSVDTTYRPHIPVSKLAISESYDTYINRSFQVTK 175
Query: 194 R-ADPSQEHDSYELLVCHANVIRYFVCRSMQFPAEAWLRFSLYHASI 239
+ + L+V HA+ + C+ + F I
Sbjct: 176 EIISECKSKGNNILIVAHASSLEACTCQLQGLSPQNSKDFVQMVRKI 222
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II),
NYSGXRC, 11181H, structural genomics; 2.15A
{Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Length = 364
Score = 37.1 bits (85), Expect = 0.011
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 13/118 (11%)
Query: 322 EYLVHPKKRSIVPEGLDLLKGTKDEKPVQSKAVRNIFMIRHGQ---YNLDGKTDAERVLT 378
+ L H + D L D + +N+ ++RH + TDA R +T
Sbjct: 157 KILSHSTDK-------DTLAVFVDRVQEGAATAQNLLIVRHAKAESRKSWKGTDANRPIT 209
Query: 379 PLGRSQALDTGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPDVPVEQCALLEEGA 436
P G + A + L + ++ S R ET Q++S + P+E L E A
Sbjct: 210 PKGAAMAFALNRELA--CFNPTRLATSPWLRCQETLQVLSWQT-ERPMEHINTLTEDA 264
Score = 34.4 bits (78), Expect = 0.082
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 12/113 (10%)
Query: 6 EYLVHPKKRSIVPEGLDLLKGTKDEKPVQSKAVRNIFMIRHGQ---YNLDGKTDAERVLT 62
+ L H + D L D + +N+ ++RH + TDA R +T
Sbjct: 157 KILSHSTDK-------DTLAVFVDRVQEGAATAQNLLIVRHAKAESRKSWKGTDANRPIT 209
Query: 63 PLGRSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSRSQALATGKRL 115
P G + A A + L + ++ S R ET Q++S + + L
Sbjct: 210 PKGAAMAFALNRELA--CFNPTRLATSPWLRCQETLQVLSWQTERPMEHINTL 260
Score = 28.3 bits (62), Expect = 6.3
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 105 RSQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSLPDVPVEQCALLEEGA 159
+ A A + L + ++ S R ET Q++S + P+E L E A
Sbjct: 213 AAMAFALNRELA--CFNPTRLATSPWLRCQETLQVLSWQT-ERPMEHINTLTEDA 264
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 35.5 bits (82), Expect = 0.036
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 23/99 (23%)
Query: 67 SQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSRSQALATGKRLKVLDYPFNKIH 126
++ + + L + N I + + + LA + LKVLD N
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLL----------LEGLAYCQELKVLDLQDNTFT 229
Query: 127 VSTMSRAIETAQLISQSLPDVP------VEQCALLEEGA 159
+ ++ +L P + C L GA
Sbjct: 230 H-------LGSSALAIALKSWPNLRELGLNDCLLSARGA 261
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi
hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP:
c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A*
2l3h_A 2l77_A 2l79_A
Length = 354
Score = 32.4 bits (73), Expect = 0.37
Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 21/136 (15%)
Query: 359 MIRHG-----------QYNLDGKTDAERVLTPLGRSQALDTGKRLKVL-------DYPFN 400
+ RHG LT LG Q + G+ ++ Y
Sbjct: 9 VFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKHE 68
Query: 401 KIHVST--MSRAIETAQLISQSL-PDVPVEQCALLEEGAPVPPDPPVGHWQPEVHQFFQD 457
++++ + + R + +A +L P V + P+P ++ F++
Sbjct: 69 QVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLPFRN 128
Query: 458 GPRIEAAFRNFFHRAD 473
PR + +
Sbjct: 129 CPRFQELESETLKSEE 144
>1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle,
glycoprotein phosphohistidine, hydrolase; HET: NEP NAG;
1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB:
1skb_A* 1sk8_A* 1ska_A* 1sk9_A*
Length = 442
Score = 31.8 bits (71), Expect = 0.59
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 5/72 (6%)
Query: 377 LTPLGRSQALDTGKRLK-----VLDYPFNKIHVSTMSRAIETAQLISQSLPDVPVEQCAL 431
LTP G Q +++G + + I S R I + + + +
Sbjct: 104 LTPFGEQQLVNSGIKFYQRYKALARSVVPFIRASGSDRVIASGEKFIEGFQQAKLADPGA 163
Query: 432 LEEGAPVPPDPP 443
AP
Sbjct: 164 TNRAAPAISVII 175
Score = 27.9 bits (61), Expect = 8.1
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 61 LTPLGRSQALATGKRLK-----VLDYPFNKIHVSTMSRAIETAQ 99
LTP G Q + +G + + I S R I + +
Sbjct: 104 LTPFGEQQLVNSGIKFYQRYKALARSVVPFIRASGSDRVIASGE 147
>2gfi_A Phytase; hydrolase; HET: NAG; 2.29A {Debaryomyces castellii}
Length = 458
Score = 31.0 bits (69), Expect = 0.92
Identities = 12/94 (12%), Positives = 27/94 (28%), Gaps = 8/94 (8%)
Query: 358 FMIRHGQYNLDGKTDAERVLTPLGRSQALDTGKRLKV----LDYPFNKIHV--STMSRAI 411
+ + Y + G + A+ G + L + + V S R
Sbjct: 110 YFVPDSVYLEKETSPKNSDSIYAGTTDAMKHGIAFRTKYGELFDTNDTLPVFTSNSGRVY 169
Query: 412 ETAQLISQSLPDVPVEQCALLEEGAPVPPDPPVG 445
+T+Q ++ + + D +G
Sbjct: 170 QTSQYFARGFMGDDFSNDTVKTN--IISEDADMG 201
Score = 29.1 bits (64), Expect = 3.9
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 42 FMIRHGQYNLDGKTDAERVLTPLGRSQALATGKRLKV----LDYPFNKIHV--STMSRAI 95
+ + Y + G + A+ G + L + + V S R
Sbjct: 110 YFVPDSVYLEKETSPKNSDSIYAGTTDAMKHGIAFRTKYGELFDTNDTLPVFTSNSGRVY 169
Query: 96 ETAQ 99
+T+Q
Sbjct: 170 QTSQ 173
>3k4q_A 3-phytase A; PHYA, 3-phosphotase, MYO-inositol hexakis phosphate
phosphohydrolase, 37288-11-2, MYO-inositol hexakis
sulfate, 62-1; HET: IHS NAG; 2.20A {Aspergillus niger}
PDB: 3k4p_A* 1ihp_A
Length = 444
Score = 30.3 bits (67), Expect = 1.9
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 18/90 (20%)
Query: 377 LTPLGRSQALDTGKRLKVLDYPF----NKIHV--STMSRAIETAQLISQSLPDVPVEQCA 430
LTP G + +++G + Y + S SR I + + + ++
Sbjct: 105 LTPFGEQELVNSGIKFYQR-YESLTRNIVPFIRSSGSSRVIASGKKFIEGFQSTKLKD-- 161
Query: 431 LLEEGAPVPPDPPVGHWQPEVHQFFQDGPR 460
P G P++ +
Sbjct: 162 ---------PRAQPGQSSPKIDVVISEASS 182
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella
pneumoniae} PDB: 2wni_A 2wu0_A
Length = 418
Score = 29.9 bits (66), Expect = 1.9
Identities = 21/129 (16%), Positives = 31/129 (24%), Gaps = 26/129 (20%)
Query: 377 LTPLGRSQALDTGKRLKVL----------DYPFNKIHV--STMSRAIETAQLISQSLPDV 424
LT G + ++ G+ I+V S + R TAQ +
Sbjct: 56 LTGHGYAAVVNKGREEGQHYRQLGLLQAGCPTAESIYVRASPLQRTRATAQALVDGAF-- 113
Query: 425 PVEQCALLEEGAPVPPDPPVGHWQPEVHQFFQDGPRIEAAFRNFFHRADPSQEHDSYELL 484
G V G P F D A + D +
Sbjct: 114 ---------PGCGVAIHYANGDADP---LFQTDKFAATQTDPARQLAAVKEKAGDLAQRR 161
Query: 485 VCHANVIRY 493
A I+
Sbjct: 162 QALAPTIQL 170
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 29.3 bits (66), Expect = 3.1
Identities = 9/81 (11%), Positives = 26/81 (32%), Gaps = 11/81 (13%)
Query: 67 SQALATGKRLKVLDYPFNKIHVSTMSRAIETAQLISQSRSQALATGKRLKVLDYPFNKIH 126
+ K L+ + ++ + + E + + A +++ ++D +IH
Sbjct: 246 KLLKDSLKHLQTVYLDYDIVKNMSK----EQCKALGA----AFPNIQKIILVDKNGKEIH 297
Query: 127 ---VSTMSRAIETAQLISQSL 144
+S I +
Sbjct: 298 PSHSIPISNLIRELSGKADVP 318
>1qfx_A Protein (PH 2.5 acid phosphatase); phosphomonoesterase, hydrolase;
HET: NAG BMA MAN; 2.40A {Aspergillus niger} SCOP:
c.60.1.2
Length = 460
Score = 29.4 bits (65), Expect = 3.1
Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 9/71 (12%)
Query: 360 IRHGQYNLDGKTDAER---VLTPLGRSQALDTGKRLKV----LDYPFNKIHV--STMSRA 410
+ Y + + G A + G K L + S R
Sbjct: 98 LNDWTYYVPNECYYNAETTSGPYAGLLDAYNHGNDYKARYGHLWNGETVVPFFSSGYGRV 157
Query: 411 IETAQLISQSL 421
IETA+ +
Sbjct: 158 IETARKFGEGF 168
Score = 27.9 bits (61), Expect = 9.6
Identities = 12/65 (18%), Positives = 17/65 (26%), Gaps = 9/65 (13%)
Query: 44 IRHGQYNLDGKTDAER---VLTPLGRSQALATGKRLKV----LDYPFNKIHV--STMSRA 94
+ Y + + G A G K L + S R
Sbjct: 98 LNDWTYYVPNECYYNAETTSGPYAGLLDAYNHGNDYKARYGHLWNGETVVPFFSSGYGRV 157
Query: 95 IETAQ 99
IETA+
Sbjct: 158 IETAR 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.413
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,214,382
Number of extensions: 505541
Number of successful extensions: 1275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1163
Number of HSP's successfully gapped: 127
Length of query: 515
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 417
Effective length of database: 3,965,535
Effective search space: 1653628095
Effective search space used: 1653628095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)