RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1301
(429 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 182 bits (464), Expect = 1e-52
Identities = 105/441 (23%), Positives = 178/441 (40%), Gaps = 68/441 (15%)
Query: 29 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 88
P P LP+ G+L LG+ + F + K +G IFRL LG P +V++G E +KEVL
Sbjct: 2 PGPPPLPLFGNLLQLGRKGNLHSVFTKLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIK 61
Query: 89 KATDFDGRPNISRYN---------DLFSGNRENCKKLSQMS-KAIRAF---VMENLMN-- 133
K +F GRP+ + + N ++L + +F E +
Sbjct: 62 KGEEFSGRPDEPWFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFGKLSFEPRVEEE 121
Query: 134 -DRIVKYERNERNNNDEEDYVDSLLERVYN----------------NRDKAKMDLNTALF 176
+V+ R D D L N + + L
Sbjct: 122 ARDLVEKLRKTAGEPGVIDITDLLFRAALNVICSILFGERFGSLEDPKFLELVKAVQELS 181
Query: 177 SLED-------------------IVGGHTAISNFIMKTLGFLVN--HPNVQAKIQKEVDA 215
SL I L L+ + + + D
Sbjct: 182 SLLSSPSPQLLDLFPILKYFPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDF 241
Query: 216 ITLRMSGVHKLKVI-FSLEDIV--------GGHTAISNFIMKTLGFLVNHPNVQAKIQKE 266
+ + + + E++ G S+ + L L HP VQ K+++E
Sbjct: 242 LDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREE 301
Query: 267 VDAITLISRDVTLADRKQMPYTEATILESIRMIASPIVP----HVATQNSSIGGFEVKKD 322
+D + R T D + MPY +A I E++R+ P+VP T+++ I G+ + K
Sbjct: 302 IDEVIGDKRSPTYDDLQNMPYLDAVIKETLRLH--PVVPLLLPREVTKDTVIPGYLIPKG 359
Query: 323 TMIFLNNYDLNMSPELWSEPENFQPERFINADGRIVKPEHFLPFSGGRRSCMGNKMVQLI 382
T++ +N Y L+ PE++ PE F PERF++ +G+ K FLPF G R+C+G ++ ++
Sbjct: 360 TLVIVNLYALHRDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERLARME 419
Query: 383 SFTTLASLFQSYDLKKLPGQQ 403
LA+L Q+++++ PG
Sbjct: 420 MKLFLATLLQNFEVELPPGTD 440
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 111 bits (279), Expect = 1e-26
Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 7/156 (4%)
Query: 253 LVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRMIASPI---VPHVAT 309
LVNHP +Q K++ E+D + VT D ++PY +A + E++R+ I VPH+
Sbjct: 320 LVNHPEIQKKLRDELDTVLGPGNQVTEPDTHKLPYLQAVVKETLRL-HMAIPLLVPHMNL 378
Query: 310 QNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADGRI---VKPEHFLPF 366
+++ +GG+++ ++ I +N + L +PELW PE F+PERF+ + ++ FLPF
Sbjct: 379 EDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPF 438
Query: 367 SGGRRSCMGNKMVQLISFTTLASLFQSYDLKKLPGQ 402
GRRSC G + I L L Q+++L PGQ
Sbjct: 439 GVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQ 474
Score = 43.6 bits (103), Expect = 2e-04
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 26 DLTPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEV 85
L P P A+PI G+ +G ++ ++ ++K +G +F L++G +VV+ E KEV
Sbjct: 30 KLPPGPAAVPIFGNWLQVGD-DLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEV 88
Query: 86 LFVKATDFDGRPNISRYNDLFSGN 109
L + +F R + D+F+G
Sbjct: 89 LHTQGVEFGSRTRNVVF-DIFTGK 111
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 105 bits (264), Expect = 1e-24
Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 253 LVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRM-IASP-IVPHVATQ 310
++ +P V KIQ+E+D++ +R V +D + Y + E+ RM A P ++PH + +
Sbjct: 323 VIKNPRVLRKIQEELDSVVGRNRMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLR 382
Query: 311 NSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADGRIVKPEH-----FLP 365
++I G+ + T +F+N + L + ++W + E F+PER A+G V+ H LP
Sbjct: 383 ATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILP 442
Query: 366 FSGGRRSCMGNKMVQLISFTTLASLFQSYDLKKLPG 401
FS G+R C G + + LA LF +D G
Sbjct: 443 FSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDG 478
Score = 48.7 bits (116), Expect = 4e-06
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 27 LTPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVL 86
L P P PI+G+L LG +P++ + K +G + L+LG V AI + E I+E+L
Sbjct: 33 LPPGPPRWPIVGNLLQLGP--LPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREIL 90
Query: 87 FVKATDFDGRP 97
+ F RP
Sbjct: 91 LRQDDVFASRP 101
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 95.5 bits (237), Expect = 3e-21
Identities = 107/447 (23%), Positives = 189/447 (42%), Gaps = 90/447 (20%)
Query: 27 LTPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVL 86
L P P LPIIG+LH + ++ + F+ +SK +G IF +K+G V++ E KE+L
Sbjct: 29 LPPGPKGLPIIGNLHQMEKFNPQHFLFR-LSKLYGPIFTMKIGGRRLAVISSAELAKELL 87
Query: 87 FVKATDFDGRPNISRYNDL-FSGNRENCKKLSQMSKAIRAFVMENLMNDRIVKYERNERN 145
+ +F RP + + + G + + + +R M NL + V R R
Sbjct: 88 KTQDLNFTARPLLKGQQTMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVR- 146
Query: 146 NNDEEDYVDSLLERVYNNRDKA-KMDLNTALFSLEDIVGGH-----------TAISNFI- 192
E+ +++++Y D++ +DL+ L S + V T + FI
Sbjct: 147 ----EEECQRMMDKIYKAADQSGTVDLSELLLSFTNCVVCRQAFGKRYNEYGTEMKRFID 202
Query: 193 --------MKTL---------GFLVNHPNVQAKIQK---EVDA----------------- 215
+ TL GFL N + A+++K E+D
Sbjct: 203 ILYETQALLGTLFFSDLFPYFGFLDNLTGLSARLKKAFKELDTYLQELLDETLDPNRPKQ 262
Query: 216 -------ITLRMSGVHKLKVIFSLEDI--------VGGHTAISNFIMKTLGFLVNHPNVQ 260
+ +++ + F+ E++ V G + ++ + +L+ +P
Sbjct: 263 ETESFIDLLMQIYKDQPFSIKFTHENVKAMILDIVVPGTDTAAAVVVWAMTYLIKYPEAM 322
Query: 261 AKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRMIASPIVP---HVAT-QNSSIGG 316
K Q EV + V+ D +PY +A I ES+R+ P++P H T ++ IGG
Sbjct: 323 KKAQDEVRNVIGDKGYVSEEDIPNLPYLKAVIKESLRL--EPVIPILLHRETIADAKIGG 380
Query: 317 FEVKKDTMIFLNNYDLNMSPELWSE-PENFQPERFINA-DGRIVKPEHF--LPFSGGRRS 372
+++ T+I +N + ++ W + P F PERF+ G K + F LPF GRR
Sbjct: 381 YDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRM 440
Query: 373 C----MGNKMVQLISFTTLASLFQSYD 395
C +G MV++ A+L +D
Sbjct: 441 CPAMHLGIAMVEI----PFANLLYKFD 463
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 94.1 bits (234), Expect = 8e-21
Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 21/161 (13%)
Query: 249 TLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRMIAS-PI-VPH 306
+ L+ HP++ K Q+E+DA+ R V+ +D Q+ Y +A I E+ R+ S P+ +P
Sbjct: 320 AIAELIRHPDILKKAQEELDAVVGRDRLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPR 379
Query: 307 VATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFI------NADGRIVKP 360
+A + I G+ + K + +N + + PE W +P F+P+RF+ D VK
Sbjct: 380 MAAEECEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVD---VKG 436
Query: 361 EHF--LPFSGGRRSC----MGNKMVQLISFTTLASLFQSYD 395
F +PF GRR C G +MV L++ A+L ++D
Sbjct: 437 SDFELIPFGAGRRICAGLSWGLRMVTLLT----ATLVHAFD 473
Score = 39.8 bits (93), Expect = 0.003
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 29 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 88
P W P++G+L LG P+ ++KT+G +FRL+ G V +V + L
Sbjct: 39 PRGW--PVLGNLPQLG--PKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRT 94
Query: 89 KATDFDGRP 97
+F RP
Sbjct: 95 HDANFSNRP 103
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 93.7 bits (233), Expect = 1e-20
Identities = 60/182 (32%), Positives = 88/182 (48%), Gaps = 18/182 (9%)
Query: 232 LEDIVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEAT 291
L +V GH + + TL L +P K Q+E+D + L R T D K++ Y
Sbjct: 284 LSMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELDRV-LQGRPPTYEDIKELKYLTRC 342
Query: 292 ILESIRMIASPIVPHVATQNSSI--GGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPER 349
I ES+R+ P V Q + GG++V I ++ Y+++ SPE+W E F PER
Sbjct: 343 INESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPER 402
Query: 350 F---------INADGRIVKPEHFLPFSGGRRSCMGNKMVQLISFTTLASLFQSYDLKKLP 400
F N D R ++PFSGG R C+G++ L + LA L Q DL+ +P
Sbjct: 403 FDLDGPVPNETNTDFR------YIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVP 456
Query: 401 GQ 402
Q
Sbjct: 457 DQ 458
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 92.1 bits (229), Expect = 4e-20
Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 240 TAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRMI 299
T++ ++ L N+P +Q K E+ + V L+DR+ PYT A I E++R
Sbjct: 301 TSLEWMVLM----LCNYPEIQEKAYNEIKSTVNGRNKVLLSDRQSTPYTVAIIKETLRYK 356
Query: 300 A-SPI-VPHVATQNSSIG-GFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADGR 356
SP +P + + IG G + KD I +N Y L + + + PE F P RF+N D
Sbjct: 357 PVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD-- 414
Query: 357 IVKPEHFLPFSGGRRSCMGNKMVQLISFTTLASLFQSYDLKKLPGQQ 403
+ F+PFS G R+C+G + Q + +++ ++ LK + G++
Sbjct: 415 --SNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGKK 459
Score = 43.2 bits (102), Expect = 2e-04
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 31 PWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKA 90
P +PI+G+LH LG +P++ +SK +G IFR+ + +V++ I+E+
Sbjct: 34 PIPIPILGNLHQLG--NLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNF 91
Query: 91 TDFDGRPNI 99
+F RP I
Sbjct: 92 DNFSDRPKI 100
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 91.0 bits (226), Expect = 5e-20
Identities = 55/204 (26%), Positives = 88/204 (43%), Gaps = 34/204 (16%)
Query: 214 DAITLRMSGVHKLKVIFSLEDI--------VGGHTAISNFIMKTLGFLVNHPNVQAKIQK 265
D ++L +S S ++I V GH +N + L L+ HP+ AK++
Sbjct: 216 DLLSLLLSAEDDGGGRLSDDEIRDELITLLVAGHETTANALAWALYALLRHPDQLAKLRA 275
Query: 266 EVDAITLISRDVTLADRKQMPYTEATILESIRMIAS-PIVPHVATQNSSIGGFEVKKDTM 324
E D P EA + E++R+ P+ VAT++ +GG+ + T+
Sbjct: 276 EPDR----------------PLLEAVVEETLRLYPPVPLARRVATEDVELGGYRIPAGTV 319
Query: 325 IFLNNYDLNMSPELWSEPENFQPERFINADGRIVKPEHFLPFSGGRRSCMGNKMVQLISF 384
+ L+ N PE++ +P+ F PERF NA LPF GG C+G + +L
Sbjct: 320 VLLSIGAANRDPEVFPDPDEFDPERFNNA---------HLPFGGGPHRCLGAALARLELK 370
Query: 385 TTLASLFQSYDLKKLPGQQYKVPI 408
LA L + + L L V
Sbjct: 371 VALAELLRRFPLLLLAEPPPLVRR 394
Score = 34.3 bits (79), Expect = 0.11
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 134 DRIVKYERNERNNNDEEDYVDSLLERVYNNRDKAKMDLNTALFSLEDIVGGHTAISNFIM 193
D ++ ER +D + LL + + D + +V GH +N +
Sbjct: 199 DAYLRALIAERRAAPRDDLLSLLLSAEDDGGGRL-SDDEIRDELITLLVAGHETTANALA 257
Query: 194 KTLGFLVNHPNVQAKIQKEVDAITLRM 220
L L+ HP+ AK++ E D L
Sbjct: 258 WALYALLRHPDQLAKLRAEPDRPLLEA 284
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 91.6 bits (227), Expect = 6e-20
Identities = 50/171 (29%), Positives = 93/171 (54%), Gaps = 6/171 (3%)
Query: 243 SNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRM--IA 300
SN + + ++N P + K +E+D + R V +D ++ Y +A I E+ R+ +A
Sbjct: 344 SNAVEWAMAEMINKPEILHKAMEEIDRVVGKERFVQESDIPKLNYVKAIIREAFRLHPVA 403
Query: 301 SPIVPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADGRIVKP 360
+ +PHVA ++++ G+ + K + + L+ Y L +P++WS+P +F+PER +N +
Sbjct: 404 AFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLT 463
Query: 361 EH---FLPFSGGRRSCMGNKMVQLISFTTLASLFQSYDLKKLPGQQYKVPI 408
E+ F+ FS G+R C + I+ LA L Q + KL G + +V +
Sbjct: 464 ENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKW-KLAGSETRVEL 513
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 91.5 bits (227), Expect = 1e-19
Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 7/172 (4%)
Query: 235 IVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILE 294
++ GH + + T L P+V AK+Q+EVD++ L R T+ D K++ YT I E
Sbjct: 400 LIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSV-LGDRFPTIEDMKKLKYTTRVINE 458
Query: 295 SIRMIASP-IVPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINA 353
S+R+ P ++ + +N +GG+ +K+ IF++ ++L+ SP+ W + E F PER+
Sbjct: 459 SLRLYPQPPVLIRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERW-PL 517
Query: 354 DG----RIVKPEHFLPFSGGRRSCMGNKMVQLISFTTLASLFQSYDLKKLPG 401
DG + +LPF GG R C+G+ + A L + +D + PG
Sbjct: 518 DGPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPG 569
Score = 28.3 bits (63), Expect = 8.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 181 IVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAI 216
++ GH + + T L P+V AK+Q+EVD++
Sbjct: 400 LIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSV 435
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 88.3 bits (219), Expect = 6e-19
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 3/156 (1%)
Query: 253 LVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRMIA-SPIVP-HVATQ 310
L +P+ Q ++ +E+ + VT D +PY A E++R + P++P +
Sbjct: 289 LAKNPDKQERLYREIREVCG-DERVTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHE 347
Query: 311 NSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADGRIVKPEHFLPFSGGR 370
++++GG+++ T I +N Y NM + W PE + PERF+ + F G+
Sbjct: 348 DTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYESADMYKTMAFGAGK 407
Query: 371 RSCMGNKMVQLISFTTLASLFQSYDLKKLPGQQYKV 406
R C G+ LI+ +A L Q ++ + G + K
Sbjct: 408 RVCAGSLQAMLIACMAIARLVQEFEWRLREGDEEKE 443
Score = 48.2 bits (115), Expect = 5e-06
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 34 LPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVK 89
LP+IG+L L + + P++ F S+ +G I+ ++ G +V+N E KE + K
Sbjct: 7 LPVIGNLLQLKE-KKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTK 61
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 88.0 bits (218), Expect = 1e-18
Identities = 51/172 (29%), Positives = 92/172 (53%), Gaps = 9/172 (5%)
Query: 236 VGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILES 295
G S+ I +L ++ +P++ + +E+D + +R + +D ++PY +A ES
Sbjct: 299 TAGTDTSSSVIEWSLAEMLKNPSILKRAHEEMDQVIGRNRRLVESDLPKLPYLQAICKES 358
Query: 296 IRMIAS-PI-VPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINA 353
R S P+ +P V+TQ + G+ + K+T + +N + + P++W PE F+PERF++
Sbjct: 359 FRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSE 418
Query: 354 DGRIVKPE----HFLPFSGGRRSCMGNKM-VQLISFTTLASLFQSYDLKKLP 400
+ P +PF GRR C G +M + L+ + L +L S+D KLP
Sbjct: 419 KNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEY-ILGTLVHSFDW-KLP 468
Score = 37.1 bits (86), Expect = 0.017
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 27 LTPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVL 86
L P P P++G L LLG +P+ A ++K +G + LK+G +V + E + L
Sbjct: 32 LPPGPRGWPLLGALPLLG--NMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFL 89
Query: 87 FVKATDFDGRP 97
+F RP
Sbjct: 90 KTLDINFSNRP 100
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 83.4 bits (206), Expect = 3e-17
Identities = 62/268 (23%), Positives = 121/268 (45%), Gaps = 51/268 (19%)
Query: 114 KKLSQMSKAIRAFVMENLMNDRIVKYERNERNNNDEE---DYVDSLLERVYNNRDKAKMD 170
K+L + K++ F+ +++++D I K + +N+ EE D VD LL
Sbjct: 234 KRLVKARKSLDGFI-DDIIDDHIQKRKNQNADNDSEEAETDMVDDLL------------- 279
Query: 171 LNTALFSLEDIVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLRMSGVHKLKVIF 230
A +S E V + N I + N++A I + V+F
Sbjct: 280 ---AFYSEEAKVNESDDLQNSIK------LTRDNIKAII----------------MDVMF 314
Query: 231 SLEDIVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEA 290
GG +++ I + L+ P ++Q+E+ + ++R V +D +++ Y +
Sbjct: 315 ------GGTETVASAIEWAMAELMKSPEDLKRVQQELADVVGLNRRVEESDLEKLTYLKC 368
Query: 291 TILESIRMIAS-PIVPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPER 349
T+ E++R+ P++ H +++ + G+ + K + + +N + + W +P+ F+P R
Sbjct: 369 TLKETLRLHPPIPLLLHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSR 428
Query: 350 FINADGRIVKPEH--FLPFSGGRRSCMG 375
F+ K H F+PF GRRSC G
Sbjct: 429 FLKPGVPDFKGSHFEFIPFGSGRRSCPG 456
Score = 45.2 bits (107), Expect = 4e-05
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 29 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 88
P P LPIIG++ ++ Q + ++ ++K +G +F +++G + + V+ E ++VL V
Sbjct: 39 PGPKGLPIIGNMLMMDQ--LTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQV 96
Query: 89 KATDFDGRP 97
+ + F RP
Sbjct: 97 QDSVFSNRP 105
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 81.6 bits (201), Expect = 1e-16
Identities = 49/157 (31%), Positives = 85/157 (54%), Gaps = 8/157 (5%)
Query: 249 TLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRMIASP--IVPH 306
TLG ++ +P + K KE+D + R V +D + Y +A E+ R+ S + PH
Sbjct: 337 TLGEMLKNPEILRKALKELDEVVGKDRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPH 396
Query: 307 VATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADG-----RIVKPE 361
VA Q++++GG+ + K + I + L +P++W +P ++PER + DG +V+ E
Sbjct: 397 VARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETE 456
Query: 362 -HFLPFSGGRRSCMGNKMVQLISFTTLASLFQSYDLK 397
F+ FS GRR C+G K+ ++ LA Q ++ K
Sbjct: 457 MRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWK 493
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 80.5 bits (199), Expect = 2e-16
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 8/167 (4%)
Query: 238 GHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAIT----LISRDVTLADRKQMPYTEATIL 293
GH + + M FL HP V K + E + I + +TL D ++M Y I
Sbjct: 299 GHESSGHLTMWATIFLQEHPEVLQKAKAEQEEIAKKRPPGQKGLTLKDVRKMEYLSQVID 358
Query: 294 ESIRMIA-SPIVPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFIN 352
E++R+I S V A + + G+ + K + ++M PE++ P+ F P R+
Sbjct: 359 ETLRLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRW-- 416
Query: 353 ADGRIVKPEHFLPFSGGRRSCMGNKMVQLISFTTLASLFQSYDLKKL 399
D K FLPF G R C GN + +L L Y L++L
Sbjct: 417 -DNYTPKAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLERL 462
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 78.3 bits (192), Expect = 1e-15
Identities = 90/443 (20%), Positives = 180/443 (40%), Gaps = 78/443 (17%)
Query: 27 LTPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVL 86
L P P LP+IG+L L + P + F +K +G I ++G +V++ E KE+L
Sbjct: 30 LPPGPSPLPVIGNLLQLQKLN-PQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELL 88
Query: 87 FVKATDFDGRP---------------NISRY------------NDLFSGNRENCKKLSQM 119
+ +F RP ++ Y N LFS R K +
Sbjct: 89 KTQDVNFADRPPHRGHEFISYGRRDMALNHYTPYYREIRKMGMNHLFSPTRVATFKHVRE 148
Query: 120 SKAIRAF-----------------VMENLMNDRIVKYERNERNNNDEEDYVDSLLERVYN 162
+A R +M N + + ++ N D E+ + ++ +Y
Sbjct: 149 EEARRMMDKINKAADKSEVVDISELMLTFTNSVVCRQAFGKKYNEDGEE-MKRFIKILYG 207
Query: 163 NRDKAKMDLNTALFS----LEDIVGGHTAISNFIMKTLGFL---VNHPNVQAKIQKEVDA 215
+ + F L+D+ G + + ++ VN +++ E ++
Sbjct: 208 TQSVLGKIFFSDFFPYCGFLDDLSGLTAYMKECFERQDTYIQEVVNETLDPKRVKPETES 267
Query: 216 ITLRMSGVHKLKVIFS-----------LEDIVGGHTAISNFIMKTLGFLVNHPNVQAKIQ 264
+ + ++K + S L+ +V G + ++ + +L+ +P V K Q
Sbjct: 268 MIDLLMEIYKEQPFASEFTVDNVKAVILDIVVAGTDTAAAAVVWGMTYLMKYPQVLKKAQ 327
Query: 265 KEV------DAITLISRDVTLADRKQMPYTEATILESIRM--IASPIVPHVATQNSSIGG 316
EV T ++ D D K +PY A + E++R+ + ++P Q++ I G
Sbjct: 328 AEVREYMKEKGSTFVTED----DVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAG 383
Query: 317 FEVKKDTMIFLNNYDLNMSPELWS-EPENFQPERFINADGRIVKPEH-FLPFSGGRRSCM 374
+++ T + +N + ++ + W P+ F+PERF+ + ++ F+PF GRR C
Sbjct: 384 YDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCP 443
Query: 375 GNKMVQLISFTTLASLFQSYDLK 397
G ++ + A+L +++ K
Sbjct: 444 GMRLGAAMLEVPYANLLLNFNFK 466
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 74.6 bits (183), Expect = 2e-14
Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 13/162 (8%)
Query: 253 LVNHPNVQAKIQKEVDAITLISRD-VTLADRKQMPYTEATILESIRM--IASPIVPHVAT 309
LV +P++Q+K+ E+ A T ++ V+ D +MPY +A +LE +R A ++PH A
Sbjct: 333 LVKNPSIQSKLHDEIKAKTGDDQEEVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAA 392
Query: 310 QNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFI-NADGRIV-----KPEHF 363
++ +GG+ + K + ++ W P F PERF+ DG V +
Sbjct: 393 EDMEVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRM 452
Query: 364 LPFSGGRRSC--MGNKMVQLISFTTLASLFQSYDLKKLPGQQ 403
+PF GRR C +G M+ L F +A++ + ++ K++PG +
Sbjct: 453 MPFGVGRRICAGLGIAMLHLEYF--VANMVREFEWKEVPGDE 492
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 66.9 bits (163), Expect = 6e-12
Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 19/195 (9%)
Query: 228 VIFSLEDIVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRD---VTLADRKQ 284
VIF+ D ++ +I+K L +P+V + +E AI + +T D K+
Sbjct: 272 VIFAARDTTA---SVLTWILKYLA---ENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKK 325
Query: 285 MPYTEATILESIRMIASPIVPHV---ATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSE 341
MP T I E++R + I+ A ++ G+ + K + +++ S +++S+
Sbjct: 326 MPLTSRVIQETLR--VASILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSD 383
Query: 342 PENFQPERFINADGRIVKPEHFLPFSGGRRSCMGNKMVQLISFTTLASLFQSYDLKKLPG 401
P F P RF A KP F+PF G SC GN++ +L + L Y + G
Sbjct: 384 PGKFDPSRFEVAP----KPNTFMPFGNGTHSCPGNELAKLEISVLIHHLTTKYRW-SIVG 438
Query: 402 QQYKVPIGDLALPYN 416
+ G ALP N
Sbjct: 439 TSNGIQYGPFALPQN 453
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 63.3 bits (154), Expect = 7e-11
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 12/158 (7%)
Query: 235 IVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRD---VTLADRKQMPYTEAT 291
+ G+ +S M + +L +HP +++KE AI R + D K M +T A
Sbjct: 273 LYSGYETVSTTSMMAVKYLHDHPKALQELRKEHLAIRERKRPEDPIDWNDYKSMRFTRAV 332
Query: 292 ILESIRMIASPIVPHV---ATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPE 348
I E+ R+ IV V TQ+ + G+ + K I++ ++N P L+ +P F P
Sbjct: 333 IFETSRLAT--IVNGVLRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPW 390
Query: 349 RFINADGRIVKPEHFLPFSGGRRSCMGNK--MVQLISF 384
R++ D + +F F GG R C G + +V++ +F
Sbjct: 391 RWL--DKSLESHNYFFLFGGGTRLCPGKELGIVEISTF 426
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 58.9 bits (142), Expect = 2e-09
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 228 VIFSLEDIVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPY 287
VIFSL ++ G S+ + L HP V AKI+ E++ D +++ Y
Sbjct: 305 VIFSL--VLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEINT------KFDNEDLEKLVY 356
Query: 288 TEATILESIRMIASPIVPHVATQNSSI--GGFEVKKDTMIFLNNYDLNMSPELWSE-PEN 344
A + ES+R+ H A + G +V ++ I + Y L +W E +
Sbjct: 357 LHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALD 416
Query: 345 FQPERFINADGRIV-KPEH-FLPFSGGRRSCMGNKMVQLISFTTLASLFQSYDLKKLPGQ 402
F+PER+I+ +G + +P + F+ F+ G R+C+G + L + ++YD K + G
Sbjct: 417 FKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGH 476
Query: 403 Q 403
+
Sbjct: 477 K 477
>gnl|CDD|215350 PLN02648, PLN02648, allene oxide synthase.
Length = 480
Score = 58.4 bits (142), Expect = 3e-09
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 35/163 (21%)
Query: 257 PNVQAKIQKEV-DAITLISRDVTLADRKQMPYTEATILESIRMIASPIVP---------- 305
+QA++ +EV A+ VT A ++MP ++ + E++R+ P VP
Sbjct: 304 EELQARLAEEVRSAVKAGGGGVTFAALEKMPLVKSVVYEALRI--EPPVPFQYGRAREDF 361
Query: 306 ----HVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADGRIVKPE 361
H A FE+KK M+F + P+++ PE F P+RF+ +G K
Sbjct: 362 VIESHDA-------AFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGE--KLL 412
Query: 362 HFLPFSGGRRS---------CMGNKMVQLISFTTLASLFQSYD 395
++ +S GR + C G V L++ +A LF YD
Sbjct: 413 KYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYD 455
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 57.7 bits (139), Expect = 5e-09
Identities = 44/184 (23%), Positives = 86/184 (46%), Gaps = 8/184 (4%)
Query: 228 VIFSLEDIVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRD---VTLADRKQ 284
V F + +V G+ S + + FL P A++++E + I + D + +D K
Sbjct: 269 VDFLVALLVAGYETTSTIMTLAVKFLTETPLALAQLKEEHEKIRAMKSDSYSLEWSDYKS 328
Query: 285 MPYTEATILESIRMIASPI--VPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEP 342
MP+T+ + E++R +A+ I + A + + G+ + K +F + +++ E + +
Sbjct: 329 MPFTQCVVNETLR-VANIIGGIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDA 387
Query: 343 ENFQPERFINADGRIVKPEHFLPFSGGRRSCMGNKMVQLISFTTLASLFQSYDLKKLPGQ 402
F P R+ + G V F PF GG R C G ++ ++ L L + +P +
Sbjct: 388 RTFNPWRWQSNSGTTVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRFSW--VPAE 445
Query: 403 QYKV 406
Q K+
Sbjct: 446 QDKL 449
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 54.4 bits (131), Expect = 6e-08
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 7/160 (4%)
Query: 238 GHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADR-KQMPYTEATILESI 296
GH + + TL L ++P Q K++ EV + + D ++ I ES+
Sbjct: 328 GHETTALLLTWTLMLLASNPTWQDKVRAEVAEVC--GGETPSVDHLSKLTLLNMVINESL 385
Query: 297 RMI-ASPIVPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPEN-FQPERFINAD 354
R+ + ++P +A ++ +G + K I++ ++ S ELW + N F P+RF A
Sbjct: 386 RLYPPATLLPRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRF--AG 443
Query: 355 GRIVKPEHFLPFSGGRRSCMGNKMVQLISFTTLASLFQSY 394
HF+PF+ G R+C+G + + LA L +
Sbjct: 444 RPFAPGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLISKF 483
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 49.7 bits (119), Expect = 2e-06
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 23/151 (15%)
Query: 240 TAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADR-KQMPYTEATILESIRM 298
+A+++F L HP V + I++E D + +++ + K+M Y A + ES+R+
Sbjct: 311 SALTSFFW----LLSKHPEVASAIREEADRVMGPNQEAASFEEMKEMHYLHAALYESMRL 366
Query: 299 IASPIVPHVA-----TQNSSI---GGFEVKKDTMIFLNNYDLNMSPELW-SEPENFQPER 349
P V + G F V K T + + Y + +W + F+PER
Sbjct: 367 F-----PPVQFDSKFAAEDDVLPDGTF-VAKGTRVTYHPYAMGRMERIWGPDCLEFKPER 420
Query: 350 FINADGRIV--KPEHFLPFSGGRRSCMGNKM 378
++ +G V P + F G R C+G +M
Sbjct: 421 WLK-NGVFVPENPFKYPVFQAGLRVCLGKEM 450
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 49.0 bits (117), Expect = 3e-06
Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 38/184 (20%)
Query: 253 LVNHPNVQAKIQKEVDAI------------------------TLISRDVTLADRKQMPYT 288
++ +P+V K+ E+ A+ L++ D ++ Y
Sbjct: 319 IMMNPHVAEKLYSELKALEKERAKEEDPEDSQSFNQRVTQFAGLLTYDSLG----KLQYL 374
Query: 289 EATILESIRMIASPIVP----HVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELW-SEPE 343
A I E++R+ P VP + + G +VK M+ Y + W +
Sbjct: 375 HAVITETLRL--YPAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAA 432
Query: 344 NFQPERFINADG--RIVKPEHFLPFSGGRRSCMGNKMVQLISFTTLASLFQSYDLKKLPG 401
+F+PER+I DG + P F F G R C+G L LA L + + + +PG
Sbjct: 433 SFKPERWIK-DGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPG 491
Query: 402 QQYK 405
K
Sbjct: 492 HPVK 495
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 40.6 bits (95), Expect = 0.001
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 15/169 (8%)
Query: 226 LKVIFSLEDIVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISR-----DVTLA 280
L +I SL + GH S I + FL P ++++E I + ++
Sbjct: 281 LDLILSL--LFAGHETSSVAIALAIFFLQGCPKAVQELREEHLEIARAKKQSGESELNWE 338
Query: 281 DRKQMPYTEATILESIRMIASPIVPH-VATQNSSIGGFEVKKDTMIFLNNYDLNMSPELW 339
D K+M +T+ I E++R+ H A ++ G+++ + +++ L+
Sbjct: 339 DYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLY 398
Query: 340 SEPENFQPERFINADGR-------IVKPEHFLPFSGGRRSCMGNKMVQL 381
+P+ F P R+ + R +F+PF GG R C G+++ +L
Sbjct: 399 DQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKL 447
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 38.2 bits (89), Expect = 0.008
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 258 NVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRMIASPI--VPHVATQNSSIG 315
N++ K K + D +P+T+ I E++RM + I V A ++ I
Sbjct: 292 NMKLKRLK-----ADTGEPLYWTDYMSLPFTQNVITETLRM-GNIINGVMRKAMKDVEIK 345
Query: 316 GFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADGRIVKPEHFLPFSGGRRSCMG 375
G+ + K + +++ E + P F P R+ D + F PF GG+R C G
Sbjct: 346 GYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKD---MNNSSFTPFGGGQRLCPG 402
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid
protease important in the pathogenesis of Alzheimer's
disease. Beta-secretase also called BACE (beta-site of
APP cleaving enzyme) or memapsin-2. Beta-secretase is an
aspartic-acid protease important in the pathogenesis of
Alzheimer's disease, and in the formation of myelin
sheaths in peripheral nerve cells. It cleaves amyloid
precursor protein (APP) to reveal the N-terminus of the
beta-amyloid peptides. The beta-amyloid peptides are the
major components of the amyloid plaques formed in the
brain of patients with Alzheimer's disease (AD). Since
BACE mediates one of the cleavages responsible for
generation of AD, it is regarded as a potential target
for pharmacological intervention in AD. Beta-secretase
is a member of pepsin family of aspartic proteases. Same
as other aspartic proteases, beta-secretase is a bilobal
enzyme, each lobe contributing a catalytic Asp residue,
with an extended active site cleft localized between the
two lobes of the molecule. The N- and C-terminal
domains, although structurally related by a 2-fold axis,
have only limited sequence homology except the vicinity
of the active site. This suggests that the enzymes
evolved by an ancient duplication event. The enzymes
specifically cleave bonds in peptides which have at
least six residues in length with hydrophobic residues
in both the P1 and P1' positions. The active site is
located at the groove formed by the two lobes, with an
extended loop projecting over the cleft to form an
11-residue flap, which encloses substrates and
inhibitors in the active site. Specificity is determined
by nearest-neighbor hydrophobic residues surrounding the
catalytic aspartates, and by three residues in the flap.
The enzymes are mostly secreted from cells as inactive
proenzymes that activate autocatalytically at acidic pH.
This family of aspartate proteases is classified by
MEROPS as the peptidase family A1 (pepsin A, clan AA).
Length = 364
Score = 29.3 bits (66), Expect = 4.0
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 392 QSYDLKKLPGQQYKVPIGDLALPYNTFRFNFSP 424
QS+ + LP Q Y P+ D + ++F S
Sbjct: 283 QSFRITILP-QLYLRPVEDHGTQLDCYKFAISQ 314
>gnl|CDD|235832 PRK06567, PRK06567, putative bifunctional glutamate synthase
subunit beta/2-polyprenylphenol hydroxylase; Validated.
Length = 1028
Score = 29.1 bits (65), Expect = 5.2
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 4/30 (13%)
Query: 129 ENLMND-RIVKYERNERNNNDEEDYVDSLL 157
ENL++D +I+KY++NER + DY DS L
Sbjct: 192 ENLIDDKKILKYQKNERVDF---DYTDSFL 218
>gnl|CDD|115787 pfam07156, Prenylcys_lyase, Prenylcysteine lyase. This family
contains prenylcysteine lyases (EC:1.8.3.5) that are
approximately 500 residues long. Prenylcysteine lyase is
a FAD-dependent thioether oxidase that degrades a
variety of prenylcysteines, producing free cysteine, an
isoprenoid aldehyde and hydrogen peroxide as products of
the reaction. It has been noted that this enzyme has
considerable homology with ClP55, a 55 kDa protein that
is associated with chloride ion pumps.
Length = 368
Score = 29.1 bits (65), Expect = 5.5
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 103 NDLFS---GNRENCKKLSQMSKA--IRAFVM------ENLMNDRIVKYERNERNNNDEED 151
L+S GN++ C L Q SK+ I VM N V Y+ + N++D D
Sbjct: 118 GGLWSVEGGNKQVCSGLLQASKSNLIHGKVMSITKYLGNGKKLYEVVYKIGKGNSSDFYD 177
Query: 152 Y--VDSLLERVYNN 163
V + L+R +N
Sbjct: 178 IVVVATPLDRSMSN 191
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.394
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,159,093
Number of extensions: 2183276
Number of successful extensions: 1925
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1859
Number of HSP's successfully gapped: 61
Length of query: 429
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 329
Effective length of database: 6,502,202
Effective search space: 2139224458
Effective search space used: 2139224458
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)