RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1301
(429 letters)
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 201 bits (514), Expect = 5e-60
Identities = 79/458 (17%), Positives = 165/458 (36%), Gaps = 63/458 (13%)
Query: 29 PMPWALPIIGHLHLL---GQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEV 85
P P P++G L + G + + K +G IFR+KLG ++ + ++ +
Sbjct: 27 PGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEAL 86
Query: 86 LFVKATDFDGRPNI---SRYND-------LFSGN----RENCKKLSQ-MSKAIRAFVMEN 130
+ + R I Y D L + + + K + ++
Sbjct: 87 -YRTESAHPQRLEIKPWKAYRDHRNEAYGLMILEGQEWQRVRSAFQKKLMKPVEIMKLDK 145
Query: 131 LMNDRIVKYERNERNNNDEEDYVDSLLERVY--------------------NNRDKAKMD 170
+N+ + + DE + L + ++ +
Sbjct: 146 KINEVLADFLERMDELCDERGRIPDLYSELNKWSFESICLVLYEKRFGLLQKETEEEALT 205
Query: 171 LNTALFSLEDIVGGHTAISNFIMKTLG------FLVNHPNVQAKIQKEVDAITLRMSGVH 224
TA+ ++ G + K L + + ++ +D R S
Sbjct: 206 FITAIKTMMSTFGKMMVTPVELHKRLNTKVWQAHTLAWDTIFKSVKPCIDNRLQRYSQQP 265
Query: 225 KLKVI--------FSLEDIV--------GGHTAISNFIMKTLGFLVNHPNVQAKIQKEVD 268
+ S +++ +N +M L L +P Q ++ +EV
Sbjct: 266 GADFLCDIYQQDHLSKKELYAAVTELQLAAVETTANSLMWILYNLSRNPQAQRRLLQEVQ 325
Query: 269 AITLISRDVTLADRKQMPYTEATILESIRMI-ASPIVPHVATQNSSIGGFEVKKDTMIFL 327
++ ++ D + MPY +A + ES+R+ + P + + +G + + K T++ L
Sbjct: 326 SVLPDNQTPRAEDLRNMPYLKACLKESMRLTPSVPFTTRTLDKPTVLGEYALPKGTVLTL 385
Query: 328 NNYDLNMSPELWSEPENFQPERFINADGRIVKPEHFLPFSGGRRSCMGNKMVQLISFTTL 387
N L S + + + F+PER++ + +I P LPF G+R C+G ++ +L L
Sbjct: 386 NTQVLGSSEDNFEDSHKFRPERWLQKEKKI-NPFAHLPFGIGKRMCIGRRLAELQLHLAL 444
Query: 388 ASLFQSYDLKKLPGQQYKVPIGDLALPYNTFRFNFSPR 425
+ Q YD+ + ++ + +P F PR
Sbjct: 445 CWIIQKYDIVATDNEPVEMLHLGILVPSRELPIAFRPR 482
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 180 bits (459), Expect = 5e-52
Identities = 61/463 (13%), Positives = 140/463 (30%), Gaps = 84/463 (18%)
Query: 31 PWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKA 90
+P +GH G+ + + + HG IF ++ + V+ VL A
Sbjct: 24 KGMIPWLGHALEFGKD--AAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVA 81
Query: 91 TDFDGRP------NISRYNDLFSGN--RENCKKLSQMSKAIRAFVMENLMNDRIVKYERN 142
+ I + ++ ++ N M + +
Sbjct: 82 SLDQTSYAQVLMKRIFNMILPSHNPESEKKRAEMHFQGASLTQLS--NSMQNNLRLLMTP 139
Query: 143 ERNNNDEEDYVDSLL---------ERVYNNRDKAKMDLNTALFSLEDIVGGHTAISNFI- 192
++ L + Y A+ + + AL + + +
Sbjct: 140 SEMGLKTSEWKKDGLFNLCYSLLFKTGYLTVFGAENNNSAALTQIYEEF---RRFDKLLP 196
Query: 193 ----------MKTLG-----FLVNH--PNVQAKIQKEVDAITLRMSGVHKLKVIFSLEDI 235
K + L P+ + +E + + + E
Sbjct: 197 KLARTTVNKEEKQIASAAREKLWKWLTPSGLDRKPREQSWLGSYVKQLQDEG--IDAEMQ 254
Query: 236 ---------VGGHTAIS--NFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQ 284
V A ++M +L+ HP +++E+ +K
Sbjct: 255 RRAMLLQLWVTQGNAGPAAFWVMG---YLLTHPEALRAVREEIQGG---KHLRLEERQKN 308
Query: 285 MPYTEATILESIRMIASPIVPHVATQNSSI-----GGFEVKKDTMIFLNNYD-LNMSPEL 338
P ++ + E++R+ A+ ++ TQ+ I + +++ + + + M P++
Sbjct: 309 TPVFDSVLWETLRLTAAALITRDVTQDKKICLSNGQEYHLRRGDRLCVFPFISPQMDPQI 368
Query: 339 WSEPENFQPERFINADG-------RIVKPEHF--LPFSGGRRSCMGNKMVQLISFTTLAS 389
+PE FQ +RF+NAD + + +P+ C G + +
Sbjct: 369 HQQPEMFQFDRFLNADRTEKKDFFKNGARVKYPSVPWGTEDNLCPGRHFAVHAIKELVFT 428
Query: 390 LFQSYDLKKLPGQQYKVPIGD-------LALPYNTFRFNFSPR 425
+ +D+ +L + VP+ D + P + R
Sbjct: 429 ILTRFDV-ELCDKNATVPLVDPSRYGFGILQPAGDLEIRYRIR 470
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 179 bits (456), Expect = 2e-51
Identities = 72/474 (15%), Positives = 148/474 (31%), Gaps = 84/474 (17%)
Query: 31 PWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKA 90
+P +G G P + + + HG +F KL + + +VL
Sbjct: 19 NGLIPYLGCALQFGA--NPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVL-CHG 75
Query: 91 TDFDGRPNISR-------YNDLF---SGNRENCKKLSQ---MSKAIRAFV---MENLMND 134
FD + + + EN A+ + MENL
Sbjct: 76 KYFDWKKFHFATSAKAFGHRSIDPMDGNTTENINDTFIKTLQGHALNSLTESMMENLQRI 135
Query: 135 RIVKYERNERNNNDEEDYVDSLLERV-------------YNNRDKAKMDLNTALFSLEDI 181
N + + + S RV RD K + L + +
Sbjct: 136 MRPPVSSNSKTAAWVTEGMYSFCYRVMFEAGYLTIFGRDLTRRDTQKAHILNNLDNFKQF 195
Query: 182 VGGHTAISNFI--------MKTLGFLVNH--PNVQAKIQKEVDAITLRMSGVHKLKVI-- 229
A+ + L K + + I+LRM L
Sbjct: 196 DKVFPALVAGLPIHMFRTAHNAREKLAESLRHENLQKRESISELISLRMFLNDTLSTFDD 255
Query: 230 -----FSLEDIVGGH--TAI-SNFIMKTLGFLVNHPNVQAKIQKEVDAI----------T 271
L + T + + + ++ +P +EV
Sbjct: 256 LEKAKTHLVVLWASQANTIPATFWSLF---QMIRNPEAMKAATEEVKRTLENAGQKVSLE 312
Query: 272 LISRDVTLADRKQMPYTEATILESIRMIASPIVPHVATQ----NSSIGGFEVKKDTMIFL 327
++ A+ +P ++ I ES+R+ ++ + A + + G + ++KD +I L
Sbjct: 313 GNPICLSQAELNDLPVLDSIIKESLRLSSASLNIRTAKEDFTLHLEDGSYNIRKDDIIAL 372
Query: 328 NNYDLNMSPELWSEPENFQPERFINADG---------RIVKPEHFLPFSGGRRSCMGNKM 378
+++ PE++ +P F+ +R+++ +G + +++PF G C G
Sbjct: 373 YPQLMHLDPEIYPDPLTFKYDRYLDENGKTKTTFYCNGLKLKYYYMPFGSGATICPGRLF 432
Query: 379 VQLISFTTLASLFQSYDLKKLPGQQYKVPI------GDLALPYNTFRFNFSPRN 426
L + ++L+ + GQ P+ + P N F + ++
Sbjct: 433 AIHEIKQFLILMLSYFELELIEGQAKCPPLDQSRAGLGILPPLNDIEFKYKFKH 486
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 174 bits (442), Expect = 2e-49
Identities = 56/454 (12%), Positives = 132/454 (29%), Gaps = 82/454 (18%)
Query: 31 PWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKA 90
++P +G+ G+ + + HG IF + +G V+ + V++
Sbjct: 24 LGSIPWLGYALDFGKD--AASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPR 81
Query: 91 TDFDGRPNISR-------YNDLFSGNRENCKKLSQ--MSKAIRAFV------MENLMNDR 135
T D + ++ + + ++A + ++
Sbjct: 82 TRLDFHAYAIFLMERIFDVQLPHYSPSDEKARMKLTLLHRELQALTEAMYTNLHAVLLGD 141
Query: 136 IVKYERNE-----------------------RNNNDEEDYVDSLLERVYNNRDKAKMDLN 172
+ + + L+
Sbjct: 142 ATEAGSGWHEMGLLDFSYSFLLRAGYLTLYGIEALPRTHESQAQDRVHSADVFHTFRQLD 201
Query: 173 TAL--FSLEDIVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLRMSGVHKLKVIF 230
L + + G + L L++ A+ + + H ++
Sbjct: 202 RLLPKLARGSLSVGDKDHMCSVKSRLWKLLSP-ARLARRAHRSKWLESYLL--HLEEMGV 258
Query: 231 SLEDIV---------GGHTAIS--NFIMKTLGFLVNHPNVQAKIQKEVDAI-------TL 272
S E +++ FL+ +P A ++ E+++I
Sbjct: 259 SEEMQARALVLQLWATQGNMGPAAFWLLL---FLLKNPEALAAVRGELESILWQAEQPVS 315
Query: 273 ISRDVTLADRKQMPYTEATILESIRMIASPIVPHVATQ-----NSSIGGFEVKKDTMIFL 327
+ + P ++ + ES+R+ A+P + + F +++ + L
Sbjct: 316 QTTTLPQKVLDSTPVLDSVLSESLRLTAAPFITREVVVDLAMPMADGREFNLRRGDRLLL 375
Query: 328 NN-YDLNMSPELWSEPENFQPERFINADG---------RIVKPEHFLPFSGGRRSCMGNK 377
PE++++PE F+ RF+N DG + +P+ G C+G
Sbjct: 376 FPFLSPQRDPEIYTDPEVFKYNRFLNPDGSEKKDFYKDGKRLKNYNMPWGAGHNHCLGRS 435
Query: 378 MVQLISFTTLASLFQSYDLKKLPGQQYKVPIGDL 411
+ + DL +L ++P DL
Sbjct: 436 YAVNSIKQFVFLVLVHLDL-ELINADVEIPEFDL 468
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 173 bits (440), Expect = 3e-49
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 4/179 (2%)
Query: 252 FLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRMIA-SPI-VPHVAT 309
++ HP+VQ ++Q+E+D + R + D+ MPYT A I E R P+ V H+ +
Sbjct: 298 LMILHPDVQRRVQQEIDDVIGQVRRPEMGDQAHMPYTTAVIHEVQRFGDIVPLGVTHMTS 357
Query: 310 QNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADGRIVKPEHFLPFSGG 369
++ + GF + K T + N + +W +P F PE F++A G VKPE FLPFS G
Sbjct: 358 RDIEVQGFRIPKGTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAFLPFSAG 417
Query: 370 RRSCMGNKMVQLISFTTLASLFQSYDLKKLPGQQ--YKVPIGDLALPYNTFRFNFSPRN 426
RR+C+G + ++ F SL Q + GQ + + + + PR+
Sbjct: 418 RRACLGEPLARMELFLFFTSLLQHFSFSVPTGQPRPSHHGVFAFLVSPSPYELCAVPRH 476
Score = 79.5 bits (197), Expect = 3e-16
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 29 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 88
P P LP +G+L + ++ F + + G +F L+L P +V+NGL ++E L
Sbjct: 13 PGPLPLPGLGNLLHVD-FQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVT 71
Query: 89 KATDFDGRPNISRYNDLFSGNRENCKKLSQMS---KAIRAFVMENL 131
D RP + L G R L++ + R F + L
Sbjct: 72 HGEDTADRPPVPITQILGFGPRSQGVFLARYGPAWREQRRFSVSTL 117
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 172 bits (438), Expect = 7e-49
Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 3/178 (1%)
Query: 252 FLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRMIA-SPI-VPHVAT 309
F+ +PN+Q ++QKE+D I + + D+ +MPYTEA + E +R P+ + H +
Sbjct: 299 FMALYPNIQGQVQKEIDLIMGPNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATS 358
Query: 310 QNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADGRIVKPEHFLPFSGG 369
+++ + G+ + K T + N Y ++ + W +PE F PERF+++ G K E +PFS G
Sbjct: 359 EDAVVRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLG 418
Query: 370 RRSCMGNKMVQLISFTTLASLFQSYDLKKLPGQQYKV-PIGDLALPYNTFRFNFSPRN 426
RR C+G + ++ F +L Q + L + P + L + R+
Sbjct: 419 RRHCLGEHLARMEMFLFFTALLQRFHLHFPHELVPDLKPRLGMTLQPQPYLICAERRH 476
Score = 78.8 bits (195), Expect = 6e-16
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 29 PMPWALPIIGHLHLLG-QYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLF 87
P P LP IG+++ L E+P+ + S+ +G IF L LG + +V+NG + +KE L
Sbjct: 15 PGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLV 74
Query: 88 VKATDFDGRPNISRYNDLFSGN 109
++ F RP + + +
Sbjct: 75 HQSEIFADRPCLPLFMKMTKMG 96
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 171 bits (435), Expect = 2e-48
Identities = 60/184 (32%), Positives = 98/184 (53%), Gaps = 12/184 (6%)
Query: 252 FLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRMIA-SPI-VPHVAT 309
FL+++P V+ K+ +E+D SR T++DR ++ EATI E +R+ +P+ +PH A
Sbjct: 299 FLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKAN 358
Query: 310 QNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADGRIV--KPEHFLPFS 367
+SSIG F V K T + +N + L+ + + W +P+ F PERF+N G + +LPF
Sbjct: 359 VDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFG 418
Query: 368 GGRRSCMGN---KMVQLISFTTLASLFQSYDLKKLPGQQYK--VPIGDLALPYNTFRFNF 422
G RSC+G + +L F +A L Q +DL+ Q I + ++F+
Sbjct: 419 AGPRSCIGEILARQ-EL--FLIMAWLLQRFDLEVPDDGQLPSLEGIPKVVFLIDSFKVKI 475
Query: 423 SPRN 426
R
Sbjct: 476 KVRQ 479
Score = 87.2 bits (217), Expect = 8e-19
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 29 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 88
+LP++G L L ++ + F + K +G I+ +++G ++V + KEVL
Sbjct: 11 KSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIK 70
Query: 89 KATDFDGRPNISRYNDLFSGNR 110
K DF GRP ++ + + +
Sbjct: 71 KGKDFSGRPQMATLDIASNNRK 92
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 169 bits (431), Expect = 1e-47
Identities = 54/180 (30%), Positives = 96/180 (53%), Gaps = 5/180 (2%)
Query: 252 FLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRMIA-SPI-VPHVAT 309
+P+VQ ++Q E+D + R + D+ +PY A + E++R + P+ +PH T
Sbjct: 305 LFTRYPDVQTRVQAELDQVVGRDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATT 364
Query: 310 QNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADGRIVK--PEHFLPFS 367
N+S+ G+ + KDT++F+N + +N P W PENF P RF++ DG I K + FS
Sbjct: 365 ANTSVLGYHIPKDTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFS 424
Query: 368 GGRRSCMGNKMVQLISFTTLASLFQSYDLKKLPGQQYKV-PIGDLALPYNTFRFNFSPRN 426
G+R C+G ++ ++ F ++ L D + P + K+ L + +F+ N + R
Sbjct: 425 VGKRRCIGEELSKMQLFLFISILAHQCDFRANPNEPAKMNFSYGLTIKPKSFKVNVTLRE 484
Score = 83.4 bits (207), Expect = 2e-17
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 29 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 88
P P+A P+IG+ +GQ + +F +++ +G +F+++LG P +V+NG I + L
Sbjct: 12 PGPFAWPLIGNAAAVGQA--AHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQ 69
Query: 89 KATDFDGRPNISRYNDLFSGN 109
+ + F RP+ + + + G
Sbjct: 70 QGSAFADRPSFASFRVVSGGR 90
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 168 bits (429), Expect = 1e-47
Identities = 46/154 (29%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Query: 252 FLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRMIA-SPI-VPHVAT 309
L+ +P ++ K+ +E+D + SR + DR++MPY +A + E R I P +PH AT
Sbjct: 293 ILMKYPEIEEKLHEEIDRVIGPSRIPAIKDRQEMPYMDAVVHEIQRFITLVPSNLPHEAT 352
Query: 310 QNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADGRIVKPEHFLPFSGG 369
+++ G+ + K T++ + + + +PE F+PE F+N +G+ ++F PFS G
Sbjct: 353 RDTIFRGYLIPKGTVVVPTLDSVLYDNQEFPDPEKFKPEHFLNENGKFKYSDYFKPFSTG 412
Query: 370 RRSCMGNKMVQLISFTTLASLFQSYDLKKLPGQQ 403
+R C G + ++ F L ++ Q ++LK L +
Sbjct: 413 KRVCAGEGLARMELFLLLCAILQHFNLKPLVDPK 446
Score = 76.0 bits (188), Expect = 4e-15
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 29 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 88
P P+ LPIIG+L L + ++F +++ G +F L +G +V++G + +KE L
Sbjct: 13 PGPFPLPIIGNLFQLE-LKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLD 71
Query: 89 KATDFDGRP-----NISRYNDLFSGNRENCK---KLSQMSKAIRAFVM-ENLMNDRIVK 138
+F GR + R + N K + S +R + M + RI +
Sbjct: 72 YKDEFSGRGDLPAFHAHRDRGIIFNNGPTWKDIRRFSLT--TLRNYGMGKQGNESRIQR 128
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 167 bits (426), Expect = 3e-47
Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 2/154 (1%)
Query: 252 FLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRMIA-SPI-VPHVAT 309
L+ HP V AK+Q+E++ + +R + DR MPYT+A + E R I P +PH T
Sbjct: 295 LLLKHPEVTAKVQEEIERVIGRNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVT 354
Query: 310 QNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADGRIVKPEHFLPFSGG 369
+ + + K T I ++ + + + PE F P F++ G K ++F+PFS G
Sbjct: 355 CDIKFRNYLIPKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAG 414
Query: 370 RRSCMGNKMVQLISFTTLASLFQSYDLKKLPGQQ 403
+R C+G + + F L S+ Q+++LK L +
Sbjct: 415 KRICVGEALAGMELFLFLTSILQNFNLKSLVDPK 448
Score = 78.0 bits (193), Expect = 9e-16
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 29 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 88
P P LP+IG++ +G + ++ +SK +G +F L G+ P +V++G E +KE L
Sbjct: 14 PGPTPLPVIGNILQIG-IKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALID 72
Query: 89 KATDFDGRPNISRYNDLFSG------NRENCK---KLSQMSKAIRAFVM-ENLMNDRIVK 138
+F GR G N + K + S M +R F M + + DR+ +
Sbjct: 73 LGEEFSGRGIFPLAERANRGFGIVFSNGKKWKEIRRFSLM--TLRNFGMGKRSIEDRVQE 130
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 167 bits (425), Expect = 5e-47
Identities = 63/180 (35%), Positives = 97/180 (53%), Gaps = 6/180 (3%)
Query: 252 FLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRMIA-SPI-VPHVAT 309
+LV P +Q KIQKE+D + R L+DR Q+PY EA ILE+ R + P +PH T
Sbjct: 308 YLVTKPEIQRKIQKELDTVIGRERRPRLSDRPQLPYLEAFILETFRHSSFLPFTIPHSTT 367
Query: 310 QNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADGRIVK---PEHFLPF 366
+++++ GF + K +F+N + +N PELW +P F+PERF+ ADG + E + F
Sbjct: 368 RDTTLNGFYIPKKCCVFVNQWQVNHDPELWEDPSEFRPERFLTADGTAINKPLSEKMMLF 427
Query: 367 SGGRRSCMGNKMVQLISFTTLASLFQSYDLKKLPGQQYKV-PIGDLALPYNTFRFNFSPR 425
G+R C+G + + F LA L Q + PG + + PI L + + + R
Sbjct: 428 GMGKRRCIGEVLAKWEIFLFLAILLQQLEFSVPPGVKVDLTPIYGLTMKHARCEHVQARR 487
Score = 83.8 bits (208), Expect = 1e-17
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 29 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 88
P PW P++GH+ LG+ P+ A +S+ +G + ++++G P +V++ L+ I++ L
Sbjct: 19 PEPWGWPLLGHVLTLGKN--PHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVR 76
Query: 89 KATDFDGRPNISRYNDLFSGN 109
+ DF GRP++ + G
Sbjct: 77 QGDDFKGRPDLYTSTLITDGQ 97
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 166 bits (423), Expect = 8e-47
Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 5/181 (2%)
Query: 252 FLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRMIA-SPI-VPHVAT 309
L+ HP V+AK+ +E+D + +R DR +MPY EA I E R P+ +
Sbjct: 294 LLMKHPEVEAKVHEEIDRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVIPMSLARRVK 353
Query: 310 QNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADGRIVKPEHFLPFSGG 369
+++ F + K T ++ + P +S P++F P+ F+N G+ K + F+PFS G
Sbjct: 354 KDTKFRDFFLPKGTEVYPMLGSVLRDPSFFSNPQDFNPQHFLNEKGQFKKSDAFVPFSIG 413
Query: 370 RRSCMGNKMVQLISFTTLASLFQSYDLKKLPGQQ---YKVPIGDLALPYNTFRFNFSPRN 426
+R+C G + ++ F ++ Q++ LK + A + +F PR+
Sbjct: 414 KRNCFGEGLARMELFLFFTTVMQNFRLKSSQSPKDIDVSPKHVGFATIPRNYTMSFLPRH 473
Query: 427 L 427
Sbjct: 474 H 474
Score = 78.7 bits (195), Expect = 6e-16
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 29 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 88
P P LP IG+ L E Y + IS+ +G +F + LG +V+ G + ++E L
Sbjct: 13 PGPTPLPFIGNYLQLNT-EQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVD 71
Query: 89 KATDFDGRPNISRYNDLFSG------NRENCK---KLSQMSKAIRAFVM-ENLMNDRIVK 138
+A +F GR + ++ +F G N E K + S +R F + + + +RI +
Sbjct: 72 QAEEFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFSIA--TLRDFGVGKRGIEERIQE 129
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 163 bits (414), Expect = 1e-45
Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 5/180 (2%)
Query: 252 FLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRMIA-SPI-VPHVAT 309
++ +P+V ++QKE++ + R L DR +MPYT+A I E R+ P VPH T
Sbjct: 294 LMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVT 353
Query: 310 QNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADGRIVKPEHFLPFSGG 369
+++ G+ + K+T +F P + P F P F++A+G + + E F+PFS G
Sbjct: 354 KDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLG 413
Query: 370 RRSCMGNKMVQLISFTTLASLFQSYDLKKLPGQQ---YKVPIGDLALPYNTFRFNFSPRN 426
+R C+G + + F ++ Q++ + + + +++ F R+
Sbjct: 414 KRICLGEGIARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVPPSYQIRFLARH 473
Score = 77.6 bits (192), Expect = 1e-15
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 13/120 (10%)
Query: 29 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 88
P P LP++G+L + + + ++F + + +G +F + LG P +V+ G + I+E L
Sbjct: 13 PGPSPLPVLGNLLQMDR-KGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVD 71
Query: 89 KATDFDGRPNISRYNDLFSG------NRENCK---KLSQMSKAIRAFVM-ENLMNDRIVK 138
+A F GR I+ + +F G N E + + S +R F M + + +RI +
Sbjct: 72 QAEAFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLA--TMRDFGMGKRSVEERIQE 129
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 163 bits (414), Expect = 2e-45
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 13/186 (6%)
Query: 252 FLVNHPNVQAKIQKEVDAI---TLISRDVTLADRKQMPYTEATILESIRMIA-SPI-VPH 306
FL++HP +Q ++Q+E+D VT DR ++P ATI E +R+ P+ +PH
Sbjct: 305 FLLHHPEIQRRLQEELDRELGPGASCSRVTYKDRARLPLLNATIAEVLRLRPVVPLALPH 364
Query: 307 VATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADGRIVKPEHFLPF 366
T+ SSI G+++ + ++ N ++ +W +P F+P+RF+ L F
Sbjct: 365 RTTRPSSIFGYDIPEGMVVIPNLQGAHLDETVWEQPHEFRPDRFLEPGAN----PSALAF 420
Query: 367 SGGRRSCMGNKMVQLISFTTLASLFQSYDLKKLPGQQYKV----PIGDLALPYNTFRFNF 422
G R C+G + +L F LA L Q++ L P P + L F+
Sbjct: 421 GCGARVCLGESLARLELFVVLARLLQAFTLLPPPVGALPSLQPDPYCGVNLKVQPFQVRL 480
Query: 423 SPRNLR 428
PR +
Sbjct: 481 QPRGVE 486
Score = 72.6 bits (179), Expect = 4e-14
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 29 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 88
+P + G LHLL +++ G ++RL+LG+ +V+N I+E +
Sbjct: 29 HLPP--LVPGFLHLLQPN--LPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIR 84
Query: 89 KATDFDGRPNISRYNDLFSGNR 110
K DF GRP I Y + +
Sbjct: 85 KWVDFAGRPQIPSYKLVSQRCQ 106
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 154 bits (391), Expect = 2e-42
Identities = 64/454 (14%), Positives = 143/454 (31%), Gaps = 70/454 (15%)
Query: 29 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 88
+ +P +GH G+ P + + + +G +F + + G + +
Sbjct: 15 YIFSPIPFLGHAIAFGKS--PIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNS 72
Query: 89 KATDFDGRPNISRYNDLFSGN-----------RENCKKLSQ---MSKAIRAFV--MENLM 132
K D + SR G E KK+ + + V +E
Sbjct: 73 KNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQ-KKMLKSGLNIAHFKQHVSIIEKET 131
Query: 133 NDRIVKYERNERNNNDEEDYVDSLLERV-------YNNRDKAKMDLNTALFSLEDIVGGH 185
+ + + N E + L+ R + + D+ GG
Sbjct: 132 KEYFESWGESGEKNVFEA--LSELIILTASHCLHGKEIRSQLNEKVAQLY---ADLDGGF 186
Query: 186 TAISNFIMKTLGFLVNHPNVQAKIQKEVDAITL------RMSGVHKLKVI---------- 229
+ + + L +A +E+ I R S ++
Sbjct: 187 SHAAWLLPGWLPLPSFRRRDRA--HREIKDIFYKAIQKRRQSQEKIDDILQTLLDATYKD 244
Query: 230 ---FSLEDIVG--------GH--TAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLIS-R 275
+ +++ G G ++ + FL +Q K E + +
Sbjct: 245 GRPLTDDEVAGMLIGLLLAGQHTSSTT--SAWMGFFLARDKTLQKKCYLEQKTVCGENLP 302
Query: 276 DVTLADRKQMPYTEATILESIRMIAS-PIVPHVATQNSSIGGFEVKKDTMIFLNNYDLNM 334
+T K + + I E++R+ I+ +A ++ G+ + + ++
Sbjct: 303 PLTYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTPQTVAGYTIPPGHQVCVSPTVNQR 362
Query: 335 SPELWSEPENFQPERFINADGRIVKPEHFLPFSGGRRSCMGNK--MVQLISFTTLASLFQ 392
+ W E +F P+R++ + + ++PF GR C+G VQ+ T +++ +
Sbjct: 363 LKDSWVERLDFNPDRYLQDNPASGEKFAYVPFGAGRHRCIGENFAYVQIK--TIWSTMLR 420
Query: 393 SYDLKKLPGQQYKVPIGDLALPYNTFRFNFSPRN 426
Y+ + G V + + R+
Sbjct: 421 LYEFDLIDGYFPTVNYTTMIHTPENPVIRYKRRS 454
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 144 bits (365), Expect = 1e-38
Identities = 41/200 (20%), Positives = 82/200 (41%), Gaps = 2/200 (1%)
Query: 228 VIFSLEDIVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPY 287
E + GG S + L + + VQ ++ EV A ++ + +P
Sbjct: 277 KANVTEMLAGGVDTTSMTLQWHLYEMARNLKVQDMLRAEVLAARHQAQGDMATMLQLVPL 336
Query: 288 TEATILESIRMI-ASPIVPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQ 346
+A+I E++R+ S + + + + + T++ + Y L P + +PENF
Sbjct: 337 LKASIKETLRLHPISVTLQRYLVNDLVLRDYMIPAKTLVQVAIYALGREPTFFFDPENFD 396
Query: 347 PERFINADGRIVKPEHFLPFSGGRRSCMGNKMVQLISFTTLASLFQSYDLKKLPGQQYKV 406
P R+++ D I L F G R C+G ++ +L L ++ +++ ++
Sbjct: 397 PTRWLSKDKNI-TYFRNLGFGWGVRQCLGRRIAELEMTIFLINMLENFRVEIQHLSDVGT 455
Query: 407 PIGDLALPYNTFRFNFSPRN 426
+ +P F F P N
Sbjct: 456 TFNLILMPEKPISFTFWPFN 475
Score = 62.7 bits (153), Expect = 7e-11
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 29 PMPWALPIIGHLHLLGQY--EVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVL 86
P P + H + + + +G I+R KLG V ++ V E++ +
Sbjct: 12 PSPGDNGWLNLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLF 71
Score = 46.5 bits (111), Expect = 9e-06
Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 14/138 (10%)
Query: 80 ENIKEVLFVKATDFDGRPNISRYNDLFSGNRENCKKLSQMSKAIRAFVMENLMNDRIVKY 139
+ I ++ + P++ R + +++ + + Y
Sbjct: 195 DAIYQMFHTSVPMLNLPPDLFRLFRTKTW-KDHVAAWDVIFSKADIYTQN--------FY 245
Query: 140 ERNERNNNDEEDYVDSLLERVYNNRDKAKMDLNTAL-FSLEDIVGGHTAISNFIMKTLGF 198
+ + DY L + ++ KM E + GG S + L
Sbjct: 246 WELRQKGSVHHDYRGILYRLLGDS----KMSFEDIKANVTEMLAGGVDTTSMTLQWHLYE 301
Query: 199 LVNHPNVQAKIQKEVDAI 216
+ + VQ ++ EV A
Sbjct: 302 MARNLKVQDMLRAEVLAA 319
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 140 bits (355), Expect = 2e-37
Identities = 49/211 (23%), Positives = 92/211 (43%), Gaps = 11/211 (5%)
Query: 206 QAKIQKEVDAITLRMSGVHKLKVIFSLEDIV--------GGHTAISNFIMKTLGFLVNHP 257
Q + E DA+ + ++ SL ++ GH +++ + L H
Sbjct: 215 QQQPPSEEDALGILLAARDDNNQPLSLPELKDQILLLLFAGHETLTSALSSFCLLLGQHS 274
Query: 258 NVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRMI-ASPIVPHVATQNSSIGG 316
+++ ++++E + + +S+++T K+MPY + + E +R+I Q+ G
Sbjct: 275 DIRERVRQEQNKL-QLSQELTAETLKKMPYLDQVLQEVLRLIPPVGGGFRELIQDCQFQG 333
Query: 317 FEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINAD-GRIVKPEHFLPFSGGRRSCMG 375
F K ++ + P+L+ +PE F PERF P +PF GG R C+G
Sbjct: 334 FHFPKGWLVSYQISQTHADPDLYPDPEKFDPERFTPDGSATHNPPFAHVPFGGGLRECLG 393
Query: 376 NKMVQLISFTTLASLFQSYDLKKLPGQQYKV 406
+ +L L Q +D LPGQ ++
Sbjct: 394 KEFARLEMKLFATRLIQQFDWTLLPGQNLEL 424
Score = 44.6 bits (106), Expect = 4e-05
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 29 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 88
P + LP +G + K + G IF+ +L I ++G + +
Sbjct: 15 PGDFGLPWLGETL---NFLNDGDFGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTK 71
Query: 89 KATDF 93
+ F
Sbjct: 72 EQETF 76
Score = 35.7 bits (83), Expect = 0.022
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 23/110 (20%)
Query: 117 SQMSKAIRAFVMENLMN--DRIVKYERNERNNNDEEDYVDSLLERVYNNRDKAKMDLNTA 174
+ K+ RA L+ ++I+K R ++ EED + LL D N
Sbjct: 191 TLFGKSQRA--RALLLAELEKIIK-AR-QQQPPSEEDALGILLA---------ARDDNNQ 237
Query: 175 LFSLEDIV--------GGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAI 216
SL ++ GH +++ + L H +++ ++++E + +
Sbjct: 238 PLSLPELKDQILLLLFAGHETLTSALSSFCLLLGQHSDIRERVRQEQNKL 287
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 132 bits (335), Expect = 2e-34
Identities = 36/179 (20%), Positives = 73/179 (40%), Gaps = 10/179 (5%)
Query: 235 IVGGH--TAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATI 292
+ GH ++ + TL L+ H + A + E+D + R V+ +Q+P E +
Sbjct: 254 MFAGHHTSSGT--ASWTLIELMRHRDAYAAVIDELDELYGDGRSVSFHALRQIPQLENVL 311
Query: 293 LESIRMIAS-PIVPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFI 351
E++R+ I+ VA + G + + ++ + N PE + +P +F P R+
Sbjct: 312 KETLRLHPPLIILMRVAKGEFEVQGHRIHEGDLVAASPAISNRIPEDFPDPHDFVPARY- 370
Query: 352 NADGRIVKPEH---FLPFSGGRRSCMGNKMVQLISFTTLASLFQSYDLKKLPGQQYKVP 407
R + ++PF GR C+G + + L + Y+ + +
Sbjct: 371 -EQPRQEDLLNRWTWIPFGAGRHRCVGAAFAIMQIKAIFSVLLREYEFEMAQPPESYRN 428
Score = 55.4 bits (134), Expect = 1e-08
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 2/69 (2%)
Query: 29 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 88
+ GHL P + + G + +L ++++G +
Sbjct: 8 RVSGGHDEHGHLEEFRTD--PIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRA 65
Query: 89 KATDFDGRP 97
D D
Sbjct: 66 GDDDLDQAK 74
Score = 38.8 bits (91), Expect = 0.003
Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 20/100 (20%)
Query: 127 VMENLMNDRIVKYERNERNNNDEEDYVDSLLERVYNNRDKAKMDLNTALFSLEDIVG--- 183
+ L+ D + N + + D +D L+ K + T FS ++I G
Sbjct: 200 GLVALVADIMNGRIANPPTDKSDRDMLDVLIA--------VKAETGTPRFSADEITGMFI 251
Query: 184 -----GH--TAISNFIMKTLGFLVNHPNVQAKIQKEVDAI 216
GH ++ + TL L+ H + A + E+D +
Sbjct: 252 SMMFAGHHTSSGT--ASWTLIELMRHRDAYAAVIDELDEL 289
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 130 bits (330), Expect = 1e-33
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 19/202 (9%)
Query: 235 IVGGH--TAIS-NFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEAT 291
++ ++S F++ + HPNV+ I KE+ + + RD+ + D +++ E
Sbjct: 304 LIAAPDTMSVSLFFMLFLIA---KHPNVEEAIIKEIQTV-IGERDIKIDDIQKLKVMENF 359
Query: 292 ILESIRMIAS-PIVPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERF 350
I ES+R +V A ++ I G+ VKK T I LN + E + +P F E F
Sbjct: 360 IYESMRYQPVVDLVMRKALEDDVIDGYPVKKGTNIILNIGRM-HRLEFFPKPNEFTLENF 418
Query: 351 INADGRIVKPEHFLPFSGGRRSCMGNKMVQLISFTTLASLFQSYDLKKLPGQQYK--VPI 408
V +F PF G R C G + ++ L +L + + +K L GQ + I
Sbjct: 419 AKN----VPYRYFQPFGFGPRGCAGKYIAMVMMKAILVTLLRRFHVKTLQGQCVESIQKI 474
Query: 409 GDLAL----PYNTFRFNFSPRN 426
DL+L N F+PRN
Sbjct: 475 HDLSLHPDETKNMLEMIFTPRN 496
Score = 48.1 bits (115), Expect = 4e-06
Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 29 PMPWALPIIGHLHLLGQ--YEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVL 86
P P IG L G+ + A ++ +G R+ + ++++ ++ ++
Sbjct: 48 PGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIM 107
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 128 bits (323), Expect = 3e-33
Identities = 41/200 (20%), Positives = 71/200 (35%), Gaps = 27/200 (13%)
Query: 232 LEDIVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEAT 291
L +++ AIS F++ + L HP + ++ E
Sbjct: 237 LINVLRPIVAISYFLVFSALALHEHPKYKEWLRSG-----------------NSREREMF 279
Query: 292 ILESIRMI-ASPIVPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERF 350
+ E R P + + ++ E KK T + L+ Y N P LW P+ F+PERF
Sbjct: 280 VQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDPRLWDHPDEFRPERF 339
Query: 351 INADGRIVKPEHFLPFSGGR----RSCMGNKMVQLISFTTLASLFQSYDLKKLPGQQYKV 406
+ +P GG C G + + +L L + +P Q
Sbjct: 340 AEREE---NLFDMIPQGGGHAEKGHRCPGEGITIEVMKASLDFLVHQIEY-DVPEQSLHY 395
Query: 407 PIGDL-ALPYNTFRFNFSPR 425
+ + +LP + F + R
Sbjct: 396 SLARMPSLPESGFVMSGIRR 415
Score = 43.5 bits (103), Expect = 9e-05
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 6/83 (7%)
Query: 29 PMPWALPIIGH-LHLLGQYEVPYQAF-KVISKTHGSIFRLKLGVVPAIVVNGLENIKEVL 86
+P + + L LL + Y + + +F+ +L I + G E K
Sbjct: 4 QIP-HDKSLDNSLTLLKE---GYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFY 59
Query: 87 FVKATDFDGRPNISRYNDLFSGN 109
LF N
Sbjct: 60 DTDRFQRQNALPKRVQKSLFGVN 82
Score = 43.1 bits (102), Expect = 1e-04
Identities = 13/107 (12%), Positives = 33/107 (30%), Gaps = 15/107 (14%)
Query: 121 KAIRAFVMENLMNDRIVKYERNERNNNDEEDYVDSLLERVYNNRDKAKMDLNTALFSLED 180
++ + +++ R + + D +++D A L +
Sbjct: 188 PRAEEWI------EVMIEDARAGLLKTTSGTALHEMAFHTQ--EDGSQLDSRMAAIELIN 239
Query: 181 IVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAI-------TLRM 220
++ AIS F++ + L HP + ++ R
Sbjct: 240 VLRPIVAISYFLVFSALALHEHPKYKEWLRSGNSREREMFVQEVRRY 286
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 129 bits (326), Expect = 3e-33
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 10/174 (5%)
Query: 235 IVGGH--TAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATI 292
+ G A + IM L L +HP +I+ EV+A+ R V D +++ +T I
Sbjct: 272 LTPGSETIAST--IMWLLQALADHPEHADRIRDEVEAV-TGGRPVAFEDVRKLRHTGNVI 328
Query: 293 LESIRMIAS-PIVPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFI 351
+E++R+ + ++ A S +GG+ + I + Y + P+ + + F P+R++
Sbjct: 329 VEAMRLRPAVWVLTRRAVAESELGGYRIPAGADIIYSPYAIQRDPKSYDDNLEFDPDRWL 388
Query: 352 NADGRIVKPEHFLPFSGGRRSCMGNK--MVQLISFTTLASLFQSYDLKKLPGQQ 403
V PFS G+R C + M QL A+L Y +++ G
Sbjct: 389 PERAANVPKYAMKPFSAGKRKCPSDHFSMAQLT--LITAALATKYRFEQVAGSN 440
Score = 48.1 bits (115), Expect = 4e-06
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 29 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 88
+P++GH L + P + + HG + R+KLG V E +
Sbjct: 26 VAGGGVPLLGHGWRLARD--PLAFMSQL-RDHGDVVRIKLGPKTVYAVTNPELTGALALN 82
Query: 89 KATDFDGR 96
G
Sbjct: 83 PDYHIAGP 90
Score = 33.4 bits (77), Expect = 0.15
Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 33/121 (27%)
Query: 121 KAIRAFVMENLMNDRIVKYERNERNNNDEEDYVDSLLERVYNNRDKAKMDLNTALFSLED 180
+ V D I+ ER + +D + +LLE AK D N ++
Sbjct: 221 ADLHLLV------DEIIA-ER-RASGQKPDDLLTALLE--------AKDD-NGDPIGEQE 263
Query: 181 I--------VGGH--TAISNFIMKTLGFLVNHPNVQAKIQKEVDAI----TLRMSGVHKL 226
I G A + IM L L +HP +I+ EV+A+ + V KL
Sbjct: 264 IHDQVVAILTPGSETIAST--IMWLLQALADHPEHADRIRDEVEAVTGGRPVAFEDVRKL 321
Query: 227 K 227
+
Sbjct: 322 R 322
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 122 bits (309), Expect = 5e-31
Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 17/207 (8%)
Query: 231 SLEDIV--------GGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADR 282
E ++ GH +N + T+ L P + A++Q EVD + R + D
Sbjct: 240 DDEGLLDNFVTFFIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVIGSKRYLDFEDL 299
Query: 283 KQMPYTEATILESIRMIASPIVPHV---ATQNSSIGGFEVKKDTMIFLNNYDLNMSPELW 339
++ Y + ES+R+ P + + I G V +T + + Y + +
Sbjct: 300 GRLQYLSQVLKESLRLY--PPAWGTFRLLEEETLIDGVRVPGNTPLLFSTYVMGRMDTYF 357
Query: 340 SEPENFQPERFINADGRIVKPEHFLPFSGGRRSCMGNKMVQLISFTTLASLFQSYDLKKL 399
+P F P+RF G + PFS G RSC+G + Q+ +A L Q + + +
Sbjct: 358 EDPLTFNPDRF--GPGAPKPRFTYFPFSLGHRSCIGQQFAQMEVKVVMAKLLQRLEFRLV 415
Query: 400 PGQQYKVPIGDLAL-PYNTFRFNFSPR 425
PGQ++ L P + PR
Sbjct: 416 PGQRFG-LQEQATLKPLDPVLCTLRPR 441
Score = 39.9 bits (94), Expect = 0.001
Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 33/168 (19%)
Query: 76 VNGLENIKEVLFVKATDFDGRPNISRYN---DLFSGNRENCKKLSQMSKAIRAFVMENLM 132
+ L ++ +A + N G R+ +++ + + +R
Sbjct: 153 TSMLLGAQK-PLSQAVKLMLEGITASRNTLAKFLPGKRKQLREVRESIRFLRQVG----- 206
Query: 133 NDRIVKYERNERNNNDEEDYVDSLLERVYNNRDKAKMDLNTALFSLEDIV--------GG 184
V+ R E EE D +L ++ + A E ++ G
Sbjct: 207 -RDWVQ-RRREALKRGEEVPAD-ILTQILKAEEGA--------QDDEGLLDNFVTFFIAG 255
Query: 185 HTAISNFIMKTLGFLVNHPNVQAKIQKEVDAI-----TLRMSGVHKLK 227
H +N + T+ L P + A++Q EVD + L + +L+
Sbjct: 256 HETSANHLAFTVMELSRQPEIVARLQAEVDEVIGSKRYLDFEDLGRLQ 303
Score = 35.3 bits (82), Expect = 0.035
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 41 HLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVL 86
+G V F +K +G + R+ + +++V E++K+ L
Sbjct: 5 DEVG-GRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFL 49
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 118 bits (297), Expect = 1e-29
Identities = 42/189 (22%), Positives = 66/189 (34%), Gaps = 28/189 (14%)
Query: 232 LEDIVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEAT 291
L +++ AI+ +I L ++A +Q Y E
Sbjct: 236 LVNVLRPTVAIAVYITFVAHALQTCSGIRAA------------------LVQQPDYAELF 277
Query: 292 ILESIRMI-ASPIVPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERF 350
+ E R P V A+Q+ G + + L+ Y N W++P+ F+PERF
Sbjct: 278 VQEVRRFYPFFPAVVARASQDFEWEGMAFPEGRQVVLDLYGSNHDAATWADPQEFRPERF 337
Query: 351 INADGRIVKPEHFLPFSGGR----RSCMGNKMVQLISFTTLASLFQSYDLKKLPGQQYKV 406
D +F+P GG C G +V I L + +P Q +
Sbjct: 338 RAWDE---DSFNFIPQGGGDHYLGHRCPGEWIVLAIMKVAAHLLVNAMRY-DVPDQDLSI 393
Query: 407 PIGDL-ALP 414
L ALP
Sbjct: 394 DFARLPALP 402
Score = 42.8 bits (101), Expect = 1e-04
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 6/82 (7%)
Query: 27 LTPMPWALPIIGH-LHLLGQYEVPYQAFKVISKTHGS-IFRLKLGVVPAIVVNGLENIKE 84
+ P L LL PY+ + G+ F + + + G + +
Sbjct: 1 MPKTP-HTKGPDETLSLLAD---PYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAEI 56
Query: 85 VLFVKATDFDGRPNISRYNDLF 106
+ +G ++ L
Sbjct: 57 FYDTTRFEREGAMPVAIQKTLL 78
Score = 34.7 bits (80), Expect = 0.059
Identities = 11/93 (11%), Positives = 29/93 (31%), Gaps = 8/93 (8%)
Query: 134 DRIVKYERNERNNNDEEDYVDSLLERVYNNRDKAKMDLNTALFSLEDIVGGHTAISNFIM 193
RI++ + + + D + + A L +++ AI+ +I
Sbjct: 194 KRIIE-GIRAGSIGSGSGTAAYAIAWHRDRHDDL-LSPHVAAVELVNVLRPTVAIAVYIT 251
Query: 194 KTLGFLVNHPNVQAKIQKE---VDAI---TLRM 220
L ++A + ++ + R
Sbjct: 252 FVAHALQTCSGIRAALVQQPDYAELFVQEVRRF 284
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 117 bits (295), Expect = 4e-29
Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 29/201 (14%)
Query: 230 FSLEDIVG--------GH--TAISNFIMKTLGFLVNHPNVQA--KIQKEVDAITLISRDV 277
SL ++ G G ++I+ ++ L++ NV+ ++KE++ ++
Sbjct: 249 MSLHEVCGMIVAAMFAGQHTSSIT--TTWSMLHLMHPANVKHLEALRKEIEE--FPAQLN 304
Query: 278 TLADRKQMPYTEATILESIRMIAS-PIVPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSP 336
+MP+ E ESIR ++ + +G + V K +I + +
Sbjct: 305 YNNVMDEMPFAERCARESIRRDPPLLMLMRKVMADVKVGSYVVPKGDIIACSPLLSHHDE 364
Query: 337 ELWSEPENFQPERFINADGRIVKPEH-FLPFSGGRRSCMGNK--MVQLISFTTLASLFQS 393
E + EP + PER K E F+ F G C+G K ++Q+ T LA+ F+S
Sbjct: 365 EAFPEPRRWDPERDE-------KVEGAFIGFGAGVHKCIGQKFGLLQVK--TILATAFRS 415
Query: 394 YDLKKLPGQQYKVPIGDLALP 414
YD + L + + +
Sbjct: 416 YDFQLLRDEVPDPDYHTMVVG 436
Score = 46.9 bits (112), Expect = 9e-06
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 29 PMPWALPIIGHLHLLGQYEVPYQAF-KVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLF 87
P +PI+GH+ G+ P + + IF + + +V
Sbjct: 7 VYPVTVPILGHIIQFGKS--PLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFL 64
Query: 88 VKATDFD 94
+
Sbjct: 65 PRNEVLS 71
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 115 bits (290), Expect = 2e-28
Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 28/210 (13%)
Query: 218 LRMSGVHKLKVIFSLEDIVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAI--TLISR 275
+ VH + G +K +G + N+ ++ +E+ +
Sbjct: 261 PKDEAVHNILFAVCFNTFGGVKILFP-NTLKWIG--LAGENLHTQLAEEIRGAIKSYGDG 317
Query: 276 DVTLADRKQMPYTEATILESIRMIASPIVPH---VATQ----NSSIGGFEVKKDTMIFLN 328
+VTL +QMP T++ + ES+R+ P VP A S FEVKK M+F
Sbjct: 318 NVTLEAIEQMPLTKSVVYESLRIE--PPVPPQYGKAKSNFTIESHDATFEVKKGEMLFGY 375
Query: 329 NYDLNMSPELWSEPENFQPERFINADGRIVKPEHFLPFSGGR---------RSCMGNKMV 379
P+++ PE + P+RF DG ++ +S G + C G V
Sbjct: 376 QPFATKDPKVFDRPEEYVPDRF-VGDGE--ALLKYVWWSNGPETESPTVENKQCAGKDFV 432
Query: 380 QLISFTTLASLFQSYDLKKLPGQQYKVPIG 409
LI+ + LF+ YD ++ + P+G
Sbjct: 433 VLITRLFVIELFRRYDSFEIELGE--SPLG 460
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 112 bits (283), Expect = 2e-27
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 12/161 (7%)
Query: 249 TLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRMIASPIVPHV- 307
L FLV +P+V K +E + L+ + KQ+ Y + E++R+ P P
Sbjct: 276 ALYFLVKNPHVLQKAAEEAARV-LVDPVPSYKQVKQLKYVGMVLNEALRL--WPTAPAFS 332
Query: 308 --ATQNSSIGG-FEVKKDTMIFLNNYDLNMSPELWSE-PENFQPERFINADGRIVKPEH- 362
A +++ +GG + ++K + + L+ +W + E F+PERF N P+H
Sbjct: 333 LYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAI---PQHA 389
Query: 363 FLPFSGGRRSCMGNKMVQLISFTTLASLFQSYDLKKLPGQQ 403
F PF G+R+C+G + + L + + +D + +
Sbjct: 390 FKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYE 430
Score = 55.3 bits (134), Expect = 2e-08
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 29 PMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFV 88
P P + +L LL + P QA I+ G IF+ + ++ IKE
Sbjct: 6 PQPKTFGELKNLPLLNT-DKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDE 64
Query: 89 KATDFD 94
D +
Sbjct: 65 SRFDKN 70
Score = 38.8 bits (91), Expect = 0.003
Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 28/144 (19%)
Query: 98 NISRYNDLFSGNRENCKKLSQMSKAIRAFVMENLMNDRIVKYERNERNNNDEEDYVDSLL 157
+ R N EN ++ + K + V D+I+ +R + + +D + +L
Sbjct: 187 KLQRANPDDPAYDENKRQFQEDIKVMNDLV------DKIIA-DR-KASGEQSDDLLTHML 238
Query: 158 ERVYNNRDKAKMDLNTALFSLEDI--------VGGHTAISNFIMKTLGFLVNHPNVQAKI 209
K E+I + GH S + L FLV +P+V K
Sbjct: 239 N--------GKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKA 290
Query: 210 QKEVDAI----TLRMSGVHKLKVI 229
+E + V +LK +
Sbjct: 291 AEEAARVLVDPVPSYKQVKQLKYV 314
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 108 bits (271), Expect = 8e-26
Identities = 32/189 (16%), Positives = 71/189 (37%), Gaps = 20/189 (10%)
Query: 237 GGHTAISNFIMKTLGFLVN-HPNVQAKIQKEVDAITLIS-RDVTLADRKQMPYTEATILE 294
+ + + V ++ +E+ ++ + ++T+ ++M T++ + E
Sbjct: 294 NTWGGMKILFPNMVKRIGRAGHQVHNRLAEEIRSVIKSNGGELTMGAIEKMELTKSVVYE 353
Query: 295 SIRMIASPIVPH---VATQ----NSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQP 347
+R P V A + S F+VK M++ P+++ + F P
Sbjct: 354 CLRFE--PPVTAQYGRAKKDLVIESHDAAFKVKAGEMLYGYQPLATRDPKIFDRADEFVP 411
Query: 348 ERFINADGRIVKPEHFLPF-------SGGRRSCMGNKMVQLISFTTLASLFQSYDLKKLP 400
ERF+ +G + + G + C G V L++ + +F+ YD
Sbjct: 412 ERFVGEEGEKLLRHVLWSNGPETETPTVGNKQCAGKDFVVLVARLFVIEIFRRYDSF--D 469
Query: 401 GQQYKVPIG 409
+ P+G
Sbjct: 470 IEVGTSPLG 478
Score = 36.4 bits (84), Expect = 0.017
Identities = 9/101 (8%), Positives = 31/101 (30%), Gaps = 3/101 (2%)
Query: 119 MSKAIRAFVMENLMNDRIVKYERNERNNNDEEDYVDSLLERVYNNRDKAKMDLNTALFSL 178
+S + + E L++ + + + ++ + DK + A +L
Sbjct: 228 LSIGLPRVIEEPLIHTFSLPPALVKSDYQRLYEFFLESAGEILVEADKLGISREEATHNL 287
Query: 179 EDIVG--GHTAISNFIMKTLGFLVN-HPNVQAKIQKEVDAI 216
+ + + V ++ +E+ ++
Sbjct: 288 LFATCFNTWGGMKILFPNMVKRIGRAGHQVHNRLAEEIRSV 328
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 95.7 bits (239), Expect = 1e-21
Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 27/230 (11%)
Query: 216 ITLRMSGVHKLKVIFSLEDIV--------GGHTAISNFIMKTLGF----LVNHPNVQAKI 263
I + S + S ++V G+ S+ L F L HP+VQ K+
Sbjct: 254 IDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSS----VLSFIMYELATHPDVQQKL 309
Query: 264 QKEVDAITLISRDVTLADRKQMPYTEATILESIRMIASPIVPH---VATQNSSIGGFEVK 320
Q+E+DA+ T QM Y + + E++R+ PI V ++ I G +
Sbjct: 310 QEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLRLF--PIAMRLERVCKKDVEINGMFIP 367
Query: 321 KDTMIFLNNYDLNMSPELWSEPENFQPERFINADGRIVKPEHFLPFSGGRRSCMGNKMVQ 380
K ++ + +Y L+ P+ W+EPE F PERF + + P + PF G R+C+G +
Sbjct: 368 KGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFAL 427
Query: 381 LISFTTLASLFQSYDLKKLPGQQYKVPI----GDLALPYNTFRFNFSPRN 426
+ L + Q++ K P ++ ++P+ G L P R+
Sbjct: 428 MNMKLALIRVLQNFSFK--PCKETQIPLKLSLGGLLQPEKPVVLKVESRD 475
Score = 35.6 bits (83), Expect = 0.027
Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 26/142 (18%)
Query: 89 KATDFDGRPNISRYNDLFSGNRENCKKL--SQMSKAIRAFVMENLMNDRIVKYERNERNN 146
K FD +F + L + + F+ + + + R E
Sbjct: 187 KLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLR-KSVKR-MKES-RLEDTQ 243
Query: 147 NDEEDYVDSLLERVYNNRDKAKMDLNTALFSLEDIV--------GGHTAISNFIMKTLGF 198
D++ +++ +++ + + + AL S ++V G+ S+ L F
Sbjct: 244 KHRVDFLQLMID----SQNSKETESHKAL-SDLELVAQSIIFIFAGYETTSS----VLSF 294
Query: 199 ----LVNHPNVQAKIQKEVDAI 216
L HP+VQ K+Q+E+DA+
Sbjct: 295 IMYELATHPDVQQKLQEEIDAV 316
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 81.5 bits (202), Expect = 5e-17
Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 27/157 (17%)
Query: 249 TLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILESIRMI-ASPIVPHV 307
+ L + P+ Q ++ + +A A E++R+ + I+
Sbjct: 233 SFLLLSHRPDWQKRVAESEEAAL------------------AAFQEALRLYPPAWILTRR 274
Query: 308 ATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADGRIVKPEHFLPFS 367
+ +G + T + L+ Y + + E F+PERF + R + PF
Sbjct: 275 LERPLLLGEDRLPPGTTLVLSPYVTQRLH--FPDGEAFRPERF--LEERGTPSGRYFPFG 330
Query: 368 GGRRSCMGNK--MVQLISFTTLASLFQSYDLKKLPGQ 402
G+R C+G +++ L + F+ + L LP
Sbjct: 331 LGQRLCLGRDFALLEGP--IVLRAFFRRFRLDPLPFP 365
Score = 33.7 bits (78), Expect = 0.094
Identities = 16/119 (13%), Positives = 36/119 (30%), Gaps = 26/119 (21%)
Query: 118 QMSKAIRAFVMENLMNDRIVKYERNERNNNDEEDYVDSLLERVYNNRDKAKMDLNTALFS 177
KA+ + + ++ R D + E + + + +
Sbjct: 156 HALKALDRIMAQTRSPLALLDLAAEARFRKDRGA-LYREAEALIVHPPLSHL-------P 207
Query: 178 LEDI--------VGGH--TAISNFIMKTLGFLVNHPNVQAKIQKEVDAI------TLRM 220
E V GH A + + + L + P+ Q ++ + +A LR+
Sbjct: 208 RERALSEAVTLLVAGHETVA--SALTWSFLLLSHRPDWQKRVAESEEAALAAFQEALRL 264
Score = 33.7 bits (78), Expect = 0.11
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 33 ALPIIGHLHLLGQYEVPYQAFKVISKTHGSIFRLKLGVVPAIVVNGLENIKEVLFVKATD 92
+L L Q P + H +F L L P ++ E ++ L + T
Sbjct: 6 LREAWPYLKDLQQD--PLAVLLAWGRAHPRLF-LPLPRFPLALIFDPEGVEGALLAEGTT 62
Query: 93 FDGR 96
Sbjct: 63 KATF 66
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 9e-09
Identities = 75/509 (14%), Positives = 139/509 (27%), Gaps = 179/509 (35%)
Query: 80 ENIKEVL---FVKATDFDG-------RPNISR--YNDLF-SGNRENCKK------LSQMS 120
++I V FV +FD + +S+ + + S + + LS+
Sbjct: 19 KDILSVFEDAFVD--NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 121 KAIRAFVMENLMND------RIVKYERNERNNNDEEDYVDSLLERVYN----------NR 164
+ ++ FV E L + I K E+ + + Y++ +R+YN +R
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMM-TRMYIEQR-DRLYNDNQVFAKYNVSR 133
Query: 165 DKAKMDLNTALFSLED-----IVG----GHTAISNFIMKTLGFLVNHPN----VQAKIQK 211
+ + L AL L I G G T ++ + + + K
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 212 EVDAITLRMSGV-------------HKLKVIFSLEDIVGGHTAISNFIMKTLGFLVNHP- 257
+ + + + H + + I + + +
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI---QAELRRLLKSK-----PYEN 245
Query: 258 ------NVQAKIQKEVDA------ITLISRDVTLADR-------------KQMPYTEATI 292
NVQ K +A I L +R + D M T +
Sbjct: 246 CLLVLLNVQNA--KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 293 LE-----------------------SIRMIASPIVPHVAT-QNSSIGGFEVKKDTMI--F 326
+ +IA I +AT N + K T+I
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-KLTTIIESS 362
Query: 327 LNN---------Y-DLNMSPE-----------LWSEPENFQPERFIN------------A 353
LN + L++ P +W + +N
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 354 DGRIVKPEHFLPFSGGRRSCMGNKMV--QLISFTTLASLFQSYDLKKLPGQQYKVP-IG- 409
+ I P +L + + ++ + F S DL QY IG
Sbjct: 423 ESTISIPSIYLEL---KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 410 -----DLALPYNTFR-----FNFSPRNLR 428
+ FR F F + +R
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 9e-06
Identities = 50/296 (16%), Positives = 91/296 (30%), Gaps = 91/296 (30%)
Query: 27 LTPMPWALPIIGHLHLLGQYEVPYQAFKVISKTHGSIF-RLK------LGVVPAIVVNG- 78
L +P + P+IG + L Y V K++ T G + LK G+V A+ +
Sbjct: 231 LLSIPISCPLIG-VIQLAHYVV---TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 79 ------LENIK---EVLF---VKATDFDGRPNISRYNDLFSGNREN----------CKKL 116
+++ VLF V+ + PN S + + EN L
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCY--EAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 117 S--QMSKAIRAFVMENLMNDRIVKYERNERNNNDEEDYV-----DSL------LERVYNN 163
+ Q+ + ++ N N V SL L +
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN-----LVVSGPPQSLYGLNLTLRKA--- 396
Query: 164 RDKAKMDLNTA--LFSLEDIVGGHTAISNFIMKTLGFL-VNHP-------NVQAKIQKEV 213
KA L+ + FS + + FL V P I K++
Sbjct: 397 --KAPSGLDQSRIPFSERKLKFSNR-----------FLPVASPFHSHLLVPASDLINKDL 443
Query: 214 DAITLRMSGVHKLKV-IFSLEDIVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVD 268
+ + +++ ++ D G ++ L ++ V I+ V
Sbjct: 444 VKNNVSFNA-KDIQIPVYDTFD---GSD------LRVLSGSISERIVDCIIRLPVK 489
Score = 42.0 bits (98), Expect = 4e-04
Identities = 49/291 (16%), Positives = 75/291 (25%), Gaps = 140/291 (48%)
Query: 50 YQAFKVISK------THGSIFRLKLGV-VPAIVVNGLENIKE--VLF------------- 87
Y+ K H F+ G + IV+N N + F
Sbjct: 1636 YKTSKAAQDVWNRADNH---FKDTYGFSILDIVIN---NPVNLTIHFGGEKGKRIRENYS 1689
Query: 88 --VKATDFDGR-----------PNISRYNDLFSGNRENCKK--LSQ-----MSKAIRAFV 127
+ T DG+ + + Y F + +Q M KA F
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSY--TFRSEKGLLSATQFTQPALTLMEKAA--F- 1744
Query: 128 MENLMNDRIVKYERNERNNNDEEDYVD--SLLERVYNNRDKAKMDLNTAL------FSLE 179
+K + + SL E Y AL S+E
Sbjct: 1745 -------EDLK----SKGLIPADATFAGHSLGE--Y-----------AALASLADVMSIE 1780
Query: 180 DIV---------------GGHTAISNFIM-------------------------KTLGFL 199
+V SN+ M K G+L
Sbjct: 1781 SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 200 V-----NHPNVQ---AKIQKEVDAIT--LRMSGVHKLKVI-----FSLEDI 235
V N N Q A + +D +T L + K+ +I SLE++
Sbjct: 1841 VEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 32.3 bits (73), Expect = 0.36
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 22/104 (21%)
Query: 331 DL-NMSP---ELWSEPENFQPERFINADGRIVK--PE----HFLPFSGGRRSCMGNKMVQ 380
DL S ++W+ +N + + + IV P HF GG + +
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHF----GGEKGKRIRENYS 1689
Query: 381 LISFTTLA-------SLFQSYDLKKLPGQQYKVPIGDLALPYNT 417
+ F T+ +F+ + + ++ G L+ T
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEIN-EHSTSYTFRSEKGLLSATQFT 1732
Score = 31.6 bits (71), Expect = 0.74
Identities = 55/330 (16%), Positives = 99/330 (30%), Gaps = 114/330 (34%)
Query: 117 SQ---M-------SKAIRAFVMENLMNDRIVKYERNERNNNDEEDYVDSLLERVYNNRDK 166
SQ M SKA + +R + + + Y S+L+ V NN
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVW------NRADNHFK--------DTYGFSILDIVINNPVN 1671
Query: 167 AKMDLNTALFSLEDIVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVD------------ 214
T F E G N+ +V+ KI KE++
Sbjct: 1672 L-----TIHFGGE---KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 215 -----------AI-TLRMSGVHKLKV--IFSLEDIVGGHTAISNFIMKTLG-F--LVNHP 257
A+ + + LK + + GH S LG + L +
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH---S------LGEYAALASLA 1774
Query: 258 NVQAKIQKEVDAITLIS-RDVTLADRKQMPYTEATILESIRMIA---SPIVPHVATQNSS 313
+V + E + ++ R +T+ +P E + MIA + + +
Sbjct: 1775 DV---MSIE-SLVEVVFYRGMTMQV--AVPRDELGR-SNYGMIAINPGRVAASFSQEALQ 1827
Query: 314 IGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFINADGR-IVKPEHFLPFSGGRRS 372
V K T + E N+ N + + V +G R+
Sbjct: 1828 YVVERVGKRTGWLV-------------EIVNY------NVENQQYV-------AAGDLRA 1861
Query: 373 CMGNKMVQLISFTTLASLFQSYDLKKLPGQ 402
+ + +++F L Q D+ +L
Sbjct: 1862 L--DTVTNVLNFIKL----QKIDIIELQKS 1885
Score = 28.9 bits (64), Expect = 4.0
Identities = 37/209 (17%), Positives = 66/209 (31%), Gaps = 56/209 (26%)
Query: 213 VDAITLRMSGVHKLKVIFSLEDIVGGHTAISNFIMKTLGFLVNHPN---VQAKIQKEVDA 269
+DA + R +L H ++ LV P A +E
Sbjct: 1 MDAYSTR---------PLTLS-----HGSL------EHVLLV--PTASFFIASQLQEQFN 38
Query: 270 ITLISRDVTLADRKQMPYTEATILES-IRMIASPIVPHVATQ-----NSSIGGFEVKKDT 323
L A + P T A ++ + ++S + P Q N + FE
Sbjct: 39 KILPEPTEGFAADDE-PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC--- 94
Query: 324 MIFLNNYDLN-MSPELWSEPENFQPER------FINADGRIVKPEHFLPFSGGRRSCMGN 376
+L D++ ++ +L E + + +I A +P S R+
Sbjct: 95 --YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 377 KMVQLIS-----------FTTLASLFQSY 394
QL++ F L L+Q+Y
Sbjct: 153 N-AQLVAIFGGQGNTDDYFEELRDLYQTY 180
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.059
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 10/34 (29%)
Query: 51 QAFKVISKTHGSIFRLKL---GVVPAIVVNG-LE 80
QA K K S LKL PA+ + +E
Sbjct: 20 QALK---KLQAS---LKLYADDSAPALAIKATME 47
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 31.1 bits (71), Expect = 0.75
Identities = 33/201 (16%), Positives = 60/201 (29%), Gaps = 48/201 (23%)
Query: 235 IVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILE 294
++ G IS I + ++ HP + D + + E
Sbjct: 234 MLAGDDNISGMIGLGVLAMLRHPEQIDAFR---------------GDEQSAQ---RAVDE 275
Query: 295 SIRM--IASPIVPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFIN 352
IR + P +A ++ ++ G E+KK + + N P L + + R
Sbjct: 276 LIRYLTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAANRDPALAPDVDRLDVTR--- 332
Query: 353 ADGRIVKPEHFLPFSGGRRSCMGNKMVQL------ISFTTLASLFQSYDLKKLPGQQYKV 406
+P + F G C+G L FT L ++ P +
Sbjct: 333 ------EPIPHVAFGHGVHHCLG---AALARLELRTVFTEL--------WRRFPALRLAD 375
Query: 407 PIGDLALPYNTFRFNFSPRNL 427
P D + + L
Sbjct: 376 PAQD--TEFRLTTPAYGLTEL 394
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 30.7 bits (70), Expect = 1.0
Identities = 35/201 (17%), Positives = 65/201 (32%), Gaps = 48/201 (23%)
Query: 235 IVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILE 294
++ GH ++ ++ L++HP A ++ ADR +P + E
Sbjct: 242 LIAGHETTASMTSLSVITLLDHPEQYAALR---------------ADRSLVP---GAVEE 283
Query: 295 SIRM--IASPIVPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFIN 352
+R IA VAT + + G ++ + + N N ++ +P+ R
Sbjct: 284 LLRYLAIADIAGGRVATADIEVEGQLIRAGEGVIVVNSIANRDGTVYEDPDALDIHR--- 340
Query: 353 ADGRIVKPEHFLPFSGGRRSCMGNKMVQL------ISFTTLASLFQSYDLKKLPGQQYKV 406
H L F G C+G L + L + ++P + V
Sbjct: 341 ------SARHHLAFGFGVHQCLG---QNLARLELEVILNAL--------MDRVPTLRLAV 383
Query: 407 PIGDLALPYNTFRFNFSPRNL 427
P+ L L
Sbjct: 384 PVEQ--LVLRPGTTIQGVNEL 402
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 29.1 bits (66), Expect = 2.8
Identities = 41/201 (20%), Positives = 69/201 (34%), Gaps = 47/201 (23%)
Query: 235 IVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILE 294
G + +F+ L L+ P ++ + + +P A + E
Sbjct: 231 FGAGVISTGSFLTTALISLIQRPQLRNLLH---------------EKPELIP---AGVEE 272
Query: 295 SIRM--IASPIVPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFIN 352
+R+ + +P +AT + +G V+K ++ + N PE + P + + +R
Sbjct: 273 LLRINLSFADGLPRLATADIQVGDVLVRKGELVLVLLEGANFDPEHFPNPGSIELDR--- 329
Query: 353 ADGRIVKPEHFLPFSGGRRSCMGNKMVQL------ISFTTLASLFQSYDLKKLPGQQYKV 406
P L F G+ C G L I L LKK+PG V
Sbjct: 330 -----PNPTSHLAFGRGQHFCPG---SALGRRHAQIGIEAL--------LKKMPGVDLAV 373
Query: 407 PIGDLALPYNTFRFNFSPRNL 427
PI L + T P L
Sbjct: 374 PIDQ--LVWRTRFQRRIPERL 392
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 29.1 bits (66), Expect = 3.0
Identities = 35/201 (17%), Positives = 63/201 (31%), Gaps = 49/201 (24%)
Query: 235 IVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILE 294
+V GH N I L+ HP + D + + E
Sbjct: 241 LVAGHETTVNAIALGALTLIQHPEQIDVLL---------------RDPGAVS---GVVEE 282
Query: 295 SIRMIASPI--VPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFIN 352
+R S + +A ++ +GG +K + ++ +N + + P+ F R
Sbjct: 283 LLRFT-SVSDHIVRMAKEDIEVGGATIKAGDAVLVSITLMNRDAKAYENPDIFDARR--- 338
Query: 353 ADGRIVKPEHFLPFSGGRRSCMGNKMVQL------ISFTTLASLFQSYDLKKLPGQQYKV 406
H + F G C+G L I+ L ++PG + V
Sbjct: 339 ------NARHHVGFGHGIHQCLG---QNLARAELEIALGGL--------FARIPGLRLAV 381
Query: 407 PIGDLALPYNTFRFNFSPRNL 427
P+ + +P P L
Sbjct: 382 PLDE--VPIKAGHDAQGPIEL 400
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 29.1 bits (66), Expect = 3.2
Identities = 39/201 (19%), Positives = 66/201 (32%), Gaps = 48/201 (23%)
Query: 235 IVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILE 294
++ H + I L++ P+ A ++ D + + E
Sbjct: 235 LIAAHDTTACMIGLGTALLLDSPDQLALLR---------------EDPSLVG---NAVEE 276
Query: 295 SIRM--IASPIVPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFIN 352
+R I VAT++ +GG + K + + + P EPE F R
Sbjct: 277 LLRYLTIGQFGGERVATRDVELGGVRIAKGEQVVAHVLAADFDPAFVEEPERFDITR--- 333
Query: 353 ADGRIVKPEHFLPFSGGRRSCMGNKMVQL------ISFTTLASLFQSYDLKKLPGQQYKV 406
+P L F G C+G QL I F TL ++LPG +
Sbjct: 334 ------RPAPHLAFGFGAHQCIG---QQLARIELQIVFETL--------FRRLPGLRLAK 376
Query: 407 PIGDLALPYNTFRFNFSPRNL 427
P+ + L + + L
Sbjct: 377 PVEE--LRFRHDMVFYGVHEL 395
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 3.4
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 9/56 (16%)
Query: 110 RENCKKLSQMSKAIRAFVMENLMNDRIVKYERNERNNNDEEDYVDSLLERVYNNRD 165
+ KA + +E + + E+N+ NN + + Y D
Sbjct: 104 ASKVMEQEWREKAKKD--LEEWNQRQSEQVEKNKINNRIAD-------KAFYQQPD 150
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, ALS collaborative crystallography, isopr
biosynthesis; 1.90A {Ehrlichia chaffeensis}
Length = 242
Score = 28.5 bits (63), Expect = 3.8
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 81 NIKEVLFVKATDFD------GRPNISRYNDLFSGNRENCKKLSQMSKAIRAFVMEN 130
++ ++ ++ +FD G +++LF ++EN L + A+R F
Sbjct: 96 SVYDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAK 151
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 28.7 bits (65), Expect = 4.2
Identities = 42/203 (20%), Positives = 73/203 (35%), Gaps = 52/203 (25%)
Query: 235 IVGGHTAISNFIMKTLGFLV--NHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATI 292
+ GH +N I +LG + +HP ++ A+ + P +
Sbjct: 243 LTAGHETTANMI--SLGVVGLLSHPEQLTVVK---------------ANPGRTP---MAV 282
Query: 293 LESIRM--IASPIVPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERF 350
E +R IA + +AT++ IGG +K + ++ N P ++ +P ER
Sbjct: 283 EELLRYFTIADGVTSRLATEDVEIGGVSIKAGEGVIVSMLSANWDPAVFKDPAVLDVER- 341
Query: 351 INADGRIVKPEHFLPFSGGRRSCMGNKMVQL------ISFTTLASLFQSYDLKKLPGQQY 404
H L F G C+G L I F TL +++P +
Sbjct: 342 --------GARHHLAFGFGPHQCLG---QNLARMELQIVFDTL--------FRRIPSLRL 382
Query: 405 KVPIGDLALPYNTFRFNFSPRNL 427
VP+ D +P+ + L
Sbjct: 383 AVPMED--VPFKGDSVIYGVHEL 403
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 28.4 bits (64), Expect = 4.7
Identities = 37/201 (18%), Positives = 65/201 (32%), Gaps = 48/201 (23%)
Query: 235 IVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILE 294
I G ++ I + L++ P + A+++ D MP A + E
Sbjct: 247 INAGRETTTSMIALSTLLLLDRPELPAELR---------------KDPDLMP---AAVDE 288
Query: 295 SIRM--IASPIVPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFIN 352
+R+ +A I VA ++ + G V D + N PE + +PE R
Sbjct: 289 LLRVLSVADSIPLRVAAEDIELSGRTVPADDGVIALLAGANHDPEQFDDPERVDFHR--- 345
Query: 353 ADGRIVKPEHFLPFSGGRRSCMGNKMVQL------ISFTTLASLFQSYDLKKLPGQQYKV 406
H + F G C+G L ++ TL L+++P +
Sbjct: 346 ------TDNHHVAFGYGVHQCVG---QHLARLELEVALETL--------LRRVPTLRLAG 388
Query: 407 PIGDLALPYNTFRFNFSPRNL 427
+ F L
Sbjct: 389 ERDQ--VVVKHDSATFGLEEL 407
>2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical
coiled coil, protein transport; HET: GTP; 2.44A {Homo
sapiens} SCOP: h.1.31.1 PDB: 2gzh_B* 2k6s_A
Length = 107
Score = 27.1 bits (59), Expect = 5.8
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 107 SGNRENCKKLSQMSKAIRAFVMENLMNDRIVK--------YERNERNNNDEEDYVDSLLE 158
+ E+ +K+ + +L + +++ R + + + EDY+D+LL
Sbjct: 22 PTSNEDLRKIPDSNPFDATAGYRSLTYEEVLQELVKHKELLRRKDTHIRELEDYIDNLLV 81
Query: 159 RV 160
RV
Sbjct: 82 RV 83
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 27.6 bits (62), Expect = 8.0
Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 46/193 (23%)
Query: 235 IVGGHTAISNFIMKTLGFLVNHPNVQAKIQKEVDAITLISRDVTLADRKQMPYTEATILE 294
I+GG ++ I + L+++P + ++ + E
Sbjct: 243 ILGGVETVAGMIGFGVLALLDNPGQIELLF---------------ESPEKAE---RVVNE 284
Query: 295 SIRM--IASPIVPHVATQNSSIGGFEVKKDTMIFLNNYDLNMSPELWSEPENFQPERFIN 352
+R P +A ++ I G +K + + N L +P+ R
Sbjct: 285 LVRYLSPVQAPNPRLAIKDVVIDGQLIKAGDYVLCSILMANRDEALTPDPDVLDANR--- 341
Query: 353 ADGRIVKPEHFLPFSGGRRSCMGNKMVQL------ISFTTLASLFQSYDLKKLPGQQYKV 406
+ F G C+G L +++ TL ++ PG + V
Sbjct: 342 ------AAVSDVGFGHGIHYCVG---AALARSMLRMAYQTL--------WRRFPGLRLAV 384
Query: 407 PIGDLALPYNTFR 419
PI ++
Sbjct: 385 PIEEVKYRSAFVD 397
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 27.6 bits (62), Expect = 8.6
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 343 ENFQPERFINADGRIVKPEHFLPFSGGRR 371
E++Q DG ++ P P+ G R
Sbjct: 449 ESYQ-----QKDGSVLVPPALQPYLGTDR 472
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.394
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,550,175
Number of extensions: 401280
Number of successful extensions: 989
Number of sequences better than 10.0: 1
Number of HSP's gapped: 873
Number of HSP's successfully gapped: 110
Length of query: 429
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 333
Effective length of database: 4,021,377
Effective search space: 1339118541
Effective search space used: 1339118541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)