BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13010
         (573 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
           The Yeast Chd1 Chromatin Remodeler
          Length = 800

 Score =  206 bits (523), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 190/352 (53%), Gaps = 23/352 (6%)

Query: 5   RHAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGIL 64
           R   ++  Q S  + S  P F     +P P +  G L+ +QL G+NW+A L+ +G NGIL
Sbjct: 202 RENSKILPQYSSNYTSQRPRFEKLSVQP-PFIKGGELRDFQLTGINWMAFLWSKGDNGIL 260

Query: 65  ADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGS 124
           ADEMGLGKTVQ++AF+  +       GP +I+ P ST+  W    E++ PD   + Y G+
Sbjct: 261 ADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGN 320

Query: 125 PQERKILRQFWDMKNLHTKDA---SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIK 181
            + R  +R++    N   K      F+V++T+Y+ ++ D      IKWQ++ +DEA  +K
Sbjct: 321 QKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLK 380

Query: 182 SSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIE 241
           ++ S  ++ L  F   NR+L++GTP+QN++ EL AL++F+MP            F+ D E
Sbjct: 381 NAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGR----------FTIDQE 430

Query: 242 SHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSAL 301
              EN+    E ++  LH  ++PF+LRR+KKDVE  L  K E ++   L+  Q   Y  +
Sbjct: 431 IDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNI 490

Query: 302 KKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKA 353
             K     L   + GG          +L+N++ + +K  NHP LF+  + + 
Sbjct: 491 LTK-NYSALTAGAKGGHF--------SLLNIMNELKKASNHPYLFDNAEERV 533



 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 12/123 (9%)

Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
           +L+N++ + +K  NHP LF+  + +       + +   K+  E  L      L+  +GK+
Sbjct: 508 SLLNIMNELKKASNHPYLFDNAEERV-----LQKFGDGKMTRENVLRG----LIMSSGKM 558

Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
            +LD LL RLK  GHRVL++SQM +M+D+L +++  +   F RLDG+   ++RR   D F
Sbjct: 559 VLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHF 618

Query: 559 AVP 561
             P
Sbjct: 619 NSP 621


>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN
          Length = 500

 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 169/318 (53%), Gaps = 35/318 (11%)

Query: 33  QPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGP 92
           +P   + NL+ YQ+KG +W+  +   G    LAD+MGLGKT+Q+IA     A+  +   P
Sbjct: 30  EPYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKKENELTP 88

Query: 93  FLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVIT 152
            L+I P S L NW++E+ +F P  +   +              D   +  +D  + +++T
Sbjct: 89  SLVICPLSVLKNWEEELSKFAPHLRFAVF------------HEDRSKIKLED--YDIILT 134

Query: 153 SYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMA 212
           +Y +++ D +    ++W+Y+++DEAQ IK+  +  +K +     + R+ L+GTPI+N + 
Sbjct: 135 TYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVD 193

Query: 213 ELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKK 272
           +LW+++ F+ P +  S+ EF   F+  I+         D      L  I+ PF+LRR K 
Sbjct: 194 DLWSIMTFLNPGLLGSYSEFKSKFATPIKKG-------DNMAKEELKAIISPFILRRTKY 246

Query: 273 D--VENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHS-SSGGSIQLSNNIASNL 329
           D  + N+L DKIE  VYC LT  Q  +Y A     ++E+L ++  S   I+    I S L
Sbjct: 247 DKAIINDLPDKIETNVYCNLTPEQAAMYKA-----EVENLFNNIDSVTGIKRKGMILSTL 301

Query: 330 MNLVMQFRKVCNHPELFE 347
           + L    +++ +HP L +
Sbjct: 302 LKL----KQIVDHPALLK 315


>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
           With Dsdna
 pdb|1Z63|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
           With Dsdna
          Length = 500

 Score =  157 bits (398), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 164/318 (51%), Gaps = 35/318 (11%)

Query: 33  QPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGP 92
           +P   + NL+ YQ+KG +W       G    LAD+ GLGKT+Q+IA     A+  +   P
Sbjct: 30  EPYNIKANLRPYQIKGFSWXRFXNKLGFGICLADDXGLGKTLQTIAVFSD-AKKENELTP 88

Query: 93  FLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVIT 152
            L+I P S L NW++E+ +F P  +   +              D   +  +D  + +++T
Sbjct: 89  SLVICPLSVLKNWEEELSKFAPHLRFAVF------------HEDRSKIKLED--YDIILT 134

Query: 153 SYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMA 212
           +Y +++ D +    ++W+Y+++DEAQ IK+  +  +K +     + R+ L+GTPI+N + 
Sbjct: 135 TYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVD 193

Query: 213 ELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKK 272
           +LW++  F+ P +  S+ EF   F+  I+         D      L  I+ PF+LRR K 
Sbjct: 194 DLWSIXTFLNPGLLGSYSEFKSKFATPIKKG-------DNXAKEELKAIISPFILRRTKY 246

Query: 273 D--VENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHS-SSGGSIQLSNNIASNL 329
           D  + N+L DKIE  VYC LT  Q   Y A     ++E+L ++  S   I+    I S L
Sbjct: 247 DKAIINDLPDKIETNVYCNLTPEQAAXYKA-----EVENLFNNIDSVTGIKRKGXILSTL 301

Query: 330 MNLVMQFRKVCNHPELFE 347
           + L    +++ +HP L +
Sbjct: 302 LKL----KQIVDHPALLK 315


>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
           EUKARYOTIC Rad54
          Length = 644

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 155/325 (47%), Gaps = 33/325 (10%)

Query: 41  LKHYQLKGMNWLANLY-----DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGP--- 92
           L+ +Q +G+ +L +       +     I+ADEMGLGKT+Q I  +  + +      P   
Sbjct: 56  LRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEID 115

Query: 93  -FLIISPASTLHNWQQEMERFVPDFKVVPY---WGSPQE-RKILRQFWDMKNLHTKDASF 147
             +++SP+S + NW  E+ +++   +V P     GS  E    L  F   + +       
Sbjct: 116 KVIVVSPSSLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTP-- 172

Query: 148 HVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
            ++I SY+      +  ++ K   +I DE   +K+S +  +  L   + + R+L+SGTPI
Sbjct: 173 -ILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPI 231

Query: 208 QNSMAELWALLHFIMPSMFDSHDEFNEWFS----KDIESHAENKT-SIDERHLSRLHMIL 262
           QN + E ++L+HF+   +  +  EF + F     K  ++ A +K  +  E+ L  L  I+
Sbjct: 232 QNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIV 291

Query: 263 KPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIK-IEDLIHSSSGGSIQL 321
              ++RR    +   L  KIE +V C LT  QK LY    K+ K +E L           
Sbjct: 292 NRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESL----------Q 341

Query: 322 SNNIASNLMNLVMQFRKVCNHPELF 346
           +  I+ + ++ +   +K+CNHP L 
Sbjct: 342 TGKISVSSLSSITSLKKLCNHPALI 366



 Score = 40.8 bits (94), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 451 RKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKR 510
           +K+CNHP L   +             + P+    +A+          +GK+ VLD +L  
Sbjct: 357 KKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQL------SGKMLVLDYILAM 410

Query: 511 LKAS-GHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISER 554
            + +   +V++ S  T+ +DL E+    R+Y ++RLDG+  I +R
Sbjct: 411 TRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKR 455


>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
           Recycles Rna Polymerase During Transcription
 pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
           Recycles Rna Polymerase During Transcription
          Length = 968

 Score = 39.3 bits (90), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 33/188 (17%)

Query: 63  ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQE-MERFVPDFKVVPY 121
           +LADE+GLGKT+++   + H           LII P +  H W  E + RF   F +   
Sbjct: 174 LLADEVGLGKTIEA-GXILHQQLLSGAAERVLIIVPETLQHQWLVEXLRRFNLRFAL--- 229

Query: 122 WGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIK----------WQY 171
                       F D +    +  +++   T  QLV+    +  R K          W  
Sbjct: 230 ------------FDDERYAEAQHDAYNPFDTE-QLVICSLDFARRSKQRLEHLCEAEWDL 276

Query: 172 LILDEAQAI---KSSSSMRWKLL--LGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMF 226
           L++DEA  +   + + S  ++ +  L       LLL+ TP Q      +A L  + P+ F
Sbjct: 277 LVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGXESHFARLRLLDPNRF 336

Query: 227 DSHDEFNE 234
               +F E
Sbjct: 337 HDFAQFVE 344


>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
 pdb|1Z5Z|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
          Length = 271

 Score = 35.4 bits (80), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 10/73 (13%)

Query: 276 NELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHS-SSGGSIQLSNNIASNLMNLVM 334
           ++L DKIE  VYC LT  Q  +Y A     ++E+L ++  S   I+    I S L+ L  
Sbjct: 23  SDLPDKIETNVYCNLTPEQAAMYKA-----EVENLFNNIDSVTGIKRKGMILSTLLKL-- 75

Query: 335 QFRKVCNHPELFE 347
             +++ +HP L +
Sbjct: 76  --KQIVDHPALLK 86


>pdb|3HGT|A Chain A, Structural And Functional Studies Of The Yeast Class Ii
           Hda1 Hdac Complex
 pdb|3HGT|B Chain B, Structural And Functional Studies Of The Yeast Class Ii
           Hda1 Hdac Complex
          Length = 328

 Score = 33.1 bits (74), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 475 DYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEF 534
           D+ +PK +    +  H   L  ++GK SVL DL+  ++       +  +  + +DLLE  
Sbjct: 88  DHYMPKSLITRDVPAH---LAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEAL 144

Query: 535 MVYRKYRFMRLDGSS 549
           ++  K    R DG S
Sbjct: 145 LLGNKVHIKRYDGHS 159


>pdb|3HGQ|A Chain A, Structural And Functional Studies Of The Yeast Class Ii
           Hda1 Hdac Complex
 pdb|3HGQ|B Chain B, Structural And Functional Studies Of The Yeast Class Ii
           Hda1 Hdac Complex
 pdb|3HGQ|C Chain C, Structural And Functional Studies Of The Yeast Class Ii
           Hda1 Hdac Complex
 pdb|3HGQ|D Chain D, Structural And Functional Studies Of The Yeast Class Ii
           Hda1 Hdac Complex
          Length = 328

 Score = 32.0 bits (71), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 475 DYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEF 534
           D+  PK +    +  H   L  ++GK SVL DL+  ++       +  +  +  DLLE  
Sbjct: 88  DHYXPKSLITRDVPAH---LAENSGKFSVLRDLINLVQEYETETAIVCRPGRTXDLLEAL 144

Query: 535 MVYRKYRFMRLDGSS 549
           ++  K    R DG S
Sbjct: 145 LLGNKVHIKRYDGHS 159


>pdb|3GAK|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
 pdb|3GAK|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
 pdb|3GAY|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
           Co Tagatose-1,6-Biphosphate
 pdb|3GAY|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
           Co Tagatose-1,6-Biphosphate
          Length = 323

 Score = 31.2 bits (69), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 419 IKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKV-CNHPELFERRDAKAPLAMSCEDYV 477
           + IE ++H+   G  ++ N  + + M +    RKV   HPE F+ RD   P   +  + +
Sbjct: 236 VPIESIVHAIGEGVCKI-NVDSDSRMAMTGAIRKVFVEHPEKFDPRDYLGPGRDAITEML 294

Query: 478 IPKL 481
           IPK+
Sbjct: 295 IPKI 298


>pdb|2ISV|A Chain A, Structure Of Giardia Fructose-1,6-biphosphate Aldolase In
           Complex With Phosphoglycolohydroxamate
 pdb|2ISV|B Chain B, Structure Of Giardia Fructose-1,6-biphosphate Aldolase In
           Complex With Phosphoglycolohydroxamate
 pdb|2ISW|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
           Complex With Phosphoglycolohydroxamate
 pdb|2ISW|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
           Complex With Phosphoglycolohydroxamate
 pdb|3OHI|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
           Complex With 3-Hydroxy-2-Pyridone
 pdb|3OHI|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
           Complex With 3-Hydroxy-2-Pyridone
          Length = 323

 Score = 31.2 bits (69), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 419 IKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKV-CNHPELFERRDAKAPLAMSCEDYV 477
           + IE ++H+   G  ++ N  + + M +    RKV   HPE F+ RD   P   +  + +
Sbjct: 236 VPIESIVHAIGEGVCKI-NVDSDSRMAMTGAIRKVFVEHPEKFDPRDYLGPGRDAITEML 294

Query: 478 IPKL 481
           IPK+
Sbjct: 295 IPKI 298


>pdb|3GB6|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
           D83a Complex With Fructose-1,6-Bisphosphate
 pdb|3GB6|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
           D83a Complex With Fructose-1,6-Bisphosphate
          Length = 323

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 419 IKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKV-CNHPELFERRDAKAPLAMSCEDYV 477
           + IE ++H+   G  ++ N  + + M +    RKV   HPE F+ RD   P   +  + +
Sbjct: 236 VPIESIVHAIGEGVCKI-NVDSDSRMAMTGAIRKVFVEHPEKFDPRDYLGPGRDAITEML 294

Query: 478 IPKL 481
           IPK+
Sbjct: 295 IPKI 298


>pdb|2VSF|A Chain A, Structure Of Xpd From Thermoplasma Acidophilum
          Length = 602

 Score = 29.3 bits (64), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 249 SIDERHLSRLHMILKPFMLRRIKKDV-----ENELSDKIEIMVYCPLTSR-----QKLLY 298
           ++DE+ L R+  +++  +L+ +KK+         L D++E  V            QK LY
Sbjct: 409 TLDEKELDRMATVIEDIILK-VKKNTIVYFPSYSLMDRVENRVSFEHMKEYRGIDQKELY 467

Query: 299 SALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVM 334
           S LKK  +    I + SGG +    N   N + +++
Sbjct: 468 SMLKKFRRDHGTIFAVSGGRLSEGINFPGNELEMII 503


>pdb|4A15|A Chain A, Crystal Structure Of An Xpd Dna Complex
          Length = 620

 Score = 29.3 bits (64), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 249 SIDERHLSRLHMILKPFMLRRIKKDV-----ENELSDKIEIMVYCPLTSR-----QKLLY 298
           ++DE+ L R+  +++  +L+ +KK+         L D++E  V            QK LY
Sbjct: 427 TLDEKELDRMATVIEDIILK-VKKNTIVYFPSYSLMDRVENRVSFEHMKEYRGIDQKELY 485

Query: 299 SALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVM 334
           S LKK  +    I + SGG +    N   N + +++
Sbjct: 486 SMLKKFRRDHGTIFAVSGGRLSEGINFPGNELEMII 521


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,467,054
Number of Sequences: 62578
Number of extensions: 669734
Number of successful extensions: 1492
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1463
Number of HSP's gapped (non-prelim): 18
length of query: 573
length of database: 14,973,337
effective HSP length: 104
effective length of query: 469
effective length of database: 8,465,225
effective search space: 3970190525
effective search space used: 3970190525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)