Query psy13010
Match_columns 573
No_of_seqs 147 out of 2189
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 17:03:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0385|consensus 100.0 3.4E-72 7.3E-77 570.7 34.0 386 32-572 158-545 (971)
2 KOG0387|consensus 100.0 1.2E-69 2.6E-74 555.0 30.1 401 28-572 193-604 (923)
3 KOG0388|consensus 100.0 4.7E-68 1E-72 533.9 28.0 516 23-572 549-1100(1185)
4 KOG0389|consensus 100.0 1.1E-67 2.4E-72 539.7 30.1 440 30-572 387-834 (941)
5 KOG0391|consensus 100.0 4.1E-65 8.9E-70 533.7 30.9 319 23-357 598-916 (1958)
6 PLN03142 Probable chromatin-re 100.0 4.4E-64 9.6E-69 553.7 38.2 384 32-572 161-545 (1033)
7 KOG0384|consensus 100.0 7.1E-65 1.5E-69 540.3 26.5 395 32-572 361-757 (1373)
8 KOG0392|consensus 100.0 1.9E-63 4.2E-68 526.8 32.7 428 10-572 945-1400(1549)
9 KOG1002|consensus 100.0 8E-64 1.7E-68 486.3 22.8 462 28-572 172-695 (791)
10 KOG0386|consensus 100.0 6.3E-59 1.4E-63 486.2 21.0 402 24-572 377-784 (1157)
11 KOG1015|consensus 100.0 6.2E-55 1.3E-59 450.4 33.6 505 27-573 655-1222(1567)
12 KOG0390|consensus 100.0 4.5E-53 9.8E-58 445.6 36.1 406 31-572 229-653 (776)
13 KOG4439|consensus 100.0 7E-54 1.5E-58 433.0 24.3 452 7-572 291-804 (901)
14 PF00176 SNF2_N: SNF2 family N 100.0 1.3E-44 2.8E-49 363.1 27.0 281 44-346 1-299 (299)
15 KOG1000|consensus 100.0 4.7E-44 1E-48 348.9 23.9 352 32-572 190-549 (689)
16 COG0553 HepA Superfamily II DN 100.0 3.3E-43 7.2E-48 403.6 33.2 412 35-572 333-768 (866)
17 KOG1016|consensus 100.0 1.6E-44 3.5E-49 366.7 19.3 467 27-569 241-791 (1387)
18 KOG1001|consensus 100.0 9.9E-43 2.2E-47 370.2 24.8 444 43-572 135-596 (674)
19 KOG0383|consensus 100.0 1.6E-44 3.5E-49 377.8 7.2 391 29-572 281-688 (696)
20 PRK04914 ATP-dependent helicas 100.0 1.9E-38 4.1E-43 349.9 35.1 351 38-571 150-551 (956)
21 TIGR00603 rad25 DNA repair hel 100.0 2.7E-29 5.8E-34 268.4 29.0 196 38-298 253-463 (732)
22 KOG0298|consensus 99.9 1.6E-24 3.5E-29 233.8 14.1 270 58-346 373-691 (1394)
23 COG1061 SSL2 DNA or RNA helica 99.9 8.1E-23 1.8E-27 213.2 25.8 298 37-571 33-337 (442)
24 PRK13766 Hef nuclease; Provisi 99.9 3.9E-21 8.4E-26 216.8 34.7 210 40-305 15-232 (773)
25 COG1111 MPH1 ERCC4-like helica 99.9 1.9E-20 4.1E-25 186.2 32.2 391 39-570 14-429 (542)
26 PHA02558 uvsW UvsW helicase; P 99.9 7.8E-20 1.7E-24 194.7 27.1 146 39-210 113-263 (501)
27 KOG1123|consensus 99.8 3.8E-20 8.2E-25 182.2 13.9 197 4-226 260-477 (776)
28 PF04851 ResIII: Type III rest 99.7 1.4E-16 3.1E-21 147.5 14.5 151 40-208 3-184 (184)
29 PRK11448 hsdR type I restricti 99.7 1.1E-14 2.3E-19 165.8 24.1 158 39-209 412-597 (1123)
30 PRK11776 ATP-dependent RNA hel 99.6 8.1E-14 1.8E-18 148.0 27.6 153 40-206 26-188 (460)
31 TIGR00614 recQ_fam ATP-depende 99.6 9.9E-14 2.1E-18 147.2 25.8 156 40-214 11-180 (470)
32 TIGR00348 hsdR type I site-spe 99.6 1.5E-13 3.2E-18 150.8 27.1 157 38-209 236-405 (667)
33 PTZ00110 helicase; Provisional 99.6 2.2E-13 4.8E-18 146.4 27.7 169 25-206 129-318 (545)
34 PRK10590 ATP-dependent RNA hel 99.6 2.6E-13 5.5E-18 143.6 26.9 155 40-207 23-191 (456)
35 TIGR00643 recG ATP-dependent D 99.6 2.6E-13 5.7E-18 148.5 26.5 158 39-209 234-399 (630)
36 PRK11192 ATP-dependent RNA hel 99.6 5.7E-13 1.2E-17 140.6 27.5 156 40-208 23-190 (434)
37 TIGR01389 recQ ATP-dependent D 99.6 3.3E-13 7.2E-18 147.4 26.6 159 40-215 13-181 (591)
38 PLN00206 DEAD-box ATP-dependen 99.6 4.2E-13 9E-18 143.9 26.4 171 24-207 119-311 (518)
39 PRK11634 ATP-dependent RNA hel 99.6 6.2E-13 1.3E-17 144.5 27.9 153 40-206 28-190 (629)
40 PRK04837 ATP-dependent RNA hel 99.6 6.3E-13 1.4E-17 139.6 27.0 154 40-206 30-200 (423)
41 PRK01297 ATP-dependent RNA hel 99.6 8E-13 1.7E-17 140.8 27.6 155 40-206 109-280 (475)
42 PRK04537 ATP-dependent RNA hel 99.6 5.3E-13 1.1E-17 144.1 26.4 154 40-206 31-202 (572)
43 PRK11057 ATP-dependent DNA hel 99.6 5.9E-13 1.3E-17 145.2 26.4 159 40-215 25-193 (607)
44 KOG0354|consensus 99.6 8.8E-13 1.9E-17 139.6 26.3 166 40-221 62-235 (746)
45 TIGR00580 mfd transcription-re 99.6 3.6E-13 7.8E-18 150.8 24.5 154 40-209 451-612 (926)
46 PRK10917 ATP-dependent DNA hel 99.6 1.2E-12 2.5E-17 144.5 27.4 157 39-209 260-422 (681)
47 PTZ00424 helicase 45; Provisio 99.6 1.9E-12 4.1E-17 135.4 27.2 155 40-207 50-212 (401)
48 smart00487 DEXDc DEAD-like hel 99.5 1.4E-13 3E-18 128.7 16.1 159 39-211 7-175 (201)
49 PRK10689 transcription-repair 99.5 5.1E-12 1.1E-16 144.7 28.2 156 39-210 599-762 (1147)
50 cd00046 DEXDc DEAD-like helica 99.5 2.7E-13 5.8E-18 119.2 14.1 136 61-206 2-144 (144)
51 PRK02362 ski2-like helicase; P 99.4 7.3E-12 1.6E-16 140.2 22.6 149 40-207 23-182 (737)
52 PRK13767 ATP-dependent helicas 99.4 2.9E-11 6.4E-16 136.8 27.0 155 40-207 32-218 (876)
53 TIGR03817 DECH_helic helicase/ 99.4 8.5E-11 1.8E-15 130.4 25.1 151 40-207 36-205 (742)
54 PLN03137 ATP-dependent DNA hel 99.4 7E-11 1.5E-15 131.2 23.4 162 40-216 460-636 (1195)
55 KOG0331|consensus 99.4 6.1E-11 1.3E-15 121.9 20.2 152 40-205 113-280 (519)
56 PRK00254 ski2-like helicase; P 99.3 1.4E-10 3.1E-15 129.4 24.7 156 40-215 23-186 (720)
57 TIGR03714 secA2 accessory Sec 99.3 9.2E-11 2E-15 126.8 21.8 69 496-564 405-473 (762)
58 cd00268 DEADc DEAD-box helicas 99.3 3.4E-11 7.3E-16 113.4 16.1 156 40-208 21-186 (203)
59 PRK01172 ski2-like helicase; P 99.3 1.6E-10 3.5E-15 128.4 23.7 149 40-207 22-180 (674)
60 PRK09401 reverse gyrase; Revie 99.3 2.6E-10 5.7E-15 131.1 25.4 130 39-182 79-215 (1176)
61 PF00270 DEAD: DEAD/DEAH box h 99.3 2.8E-11 6E-16 110.3 14.0 157 42-213 1-168 (169)
62 COG0513 SrmB Superfamily II DN 99.3 8.2E-10 1.8E-14 117.8 27.2 156 40-208 51-217 (513)
63 COG1200 RecG RecG-like helicas 99.3 2.7E-10 5.9E-15 119.2 21.2 159 40-212 262-427 (677)
64 TIGR03158 cas3_cyano CRISPR-as 99.3 4.2E-09 9E-14 107.6 27.9 156 44-208 1-193 (357)
65 COG4096 HsdR Type I site-speci 99.3 2.1E-11 4.4E-16 129.2 10.4 161 28-208 153-322 (875)
66 TIGR01054 rgy reverse gyrase. 99.2 1.4E-09 3.1E-14 125.3 25.1 130 40-182 78-213 (1171)
67 KOG0330|consensus 99.2 4.5E-10 9.8E-15 108.8 17.4 154 40-207 83-246 (476)
68 TIGR02621 cas3_GSU0051 CRISPR- 99.2 2.5E-09 5.3E-14 117.2 24.7 153 40-207 15-216 (844)
69 COG1205 Distinct helicase fami 99.2 3.7E-09 8.1E-14 118.0 26.0 149 40-205 70-241 (851)
70 PF13872 AAA_34: P-loop contai 99.2 6.3E-10 1.4E-14 106.8 15.7 241 29-300 24-302 (303)
71 COG1201 Lhr Lhr-like helicases 99.2 3.4E-09 7.4E-14 115.4 23.2 155 40-207 22-194 (814)
72 TIGR01587 cas3_core CRISPR-ass 99.2 9.3E-09 2E-13 105.8 25.5 144 62-207 2-166 (358)
73 PHA02653 RNA helicase NPH-II; 99.2 5.5E-09 1.2E-13 113.5 23.5 155 38-207 158-332 (675)
74 PRK09200 preprotein translocas 99.1 1.7E-08 3.8E-13 110.5 23.2 69 496-564 409-477 (790)
75 COG1204 Superfamily II helicas 99.1 1.4E-09 3E-14 119.7 14.6 165 40-226 31-205 (766)
76 PRK14701 reverse gyrase; Provi 99.1 2.3E-08 5E-13 118.0 25.6 130 40-181 79-213 (1638)
77 TIGR00595 priA primosomal prot 99.1 2.4E-08 5.3E-13 106.1 23.0 131 64-208 2-141 (505)
78 COG0514 RecQ Superfamily II DN 99.0 1.1E-08 2.3E-13 107.6 19.1 161 40-219 17-189 (590)
79 PRK12898 secA preprotein trans 99.0 2.9E-08 6.3E-13 106.4 22.2 66 497-562 455-520 (656)
80 PRK13104 secA preprotein trans 99.0 5.5E-08 1.2E-12 106.5 24.5 68 498-565 427-494 (896)
81 KOG0350|consensus 99.0 1.2E-08 2.6E-13 102.1 16.6 141 39-183 158-310 (620)
82 KOG0328|consensus 99.0 2.1E-08 4.5E-13 93.3 15.6 150 43-206 52-210 (400)
83 PRK05580 primosome assembly pr 99.0 1.3E-08 2.8E-13 112.2 16.5 155 39-208 143-306 (679)
84 COG4098 comFA Superfamily II D 98.9 4.3E-07 9.4E-12 87.2 23.7 146 38-208 95-245 (441)
85 COG4889 Predicted helicase [Ge 98.9 2E-09 4.3E-14 113.8 8.2 172 27-207 148-351 (1518)
86 TIGR00963 secA preprotein tran 98.9 5.6E-08 1.2E-12 104.9 19.1 66 498-565 388-453 (745)
87 PRK09751 putative ATP-dependen 98.9 1.7E-07 3.7E-12 109.1 23.4 139 65-214 2-175 (1490)
88 PRK13107 preprotein translocas 98.9 2.3E-07 4.9E-12 101.5 22.4 69 497-565 431-499 (908)
89 PRK12904 preprotein translocas 98.9 2.1E-07 4.6E-12 101.9 20.8 68 497-566 412-479 (830)
90 COG1202 Superfamily II helicas 98.9 2.2E-07 4.7E-12 94.8 19.2 169 26-205 194-381 (830)
91 KOG0343|consensus 98.8 9.1E-08 2E-12 97.0 16.1 155 40-208 91-258 (758)
92 PRK09694 helicase Cas3; Provis 98.8 7.9E-07 1.7E-11 99.4 24.9 164 40-208 286-482 (878)
93 KOG0345|consensus 98.8 5.2E-07 1.1E-11 90.0 20.4 133 40-184 28-173 (567)
94 KOG0335|consensus 98.8 1.4E-07 3.1E-12 95.8 16.9 130 40-182 96-240 (482)
95 KOG0333|consensus 98.8 5.9E-07 1.3E-11 90.8 18.3 66 497-564 501-566 (673)
96 KOG4284|consensus 98.7 1.3E-07 2.8E-12 97.4 13.6 138 59-206 62-209 (980)
97 KOG0340|consensus 98.7 2.3E-06 4.9E-11 82.6 18.9 72 498-570 236-308 (442)
98 TIGR01970 DEAH_box_HrpB ATP-de 98.7 3.3E-06 7.2E-11 94.4 23.0 56 515-571 209-267 (819)
99 PRK11664 ATP-dependent RNA hel 98.6 4.8E-06 1.1E-10 93.2 23.5 56 515-571 212-270 (812)
100 COG1197 Mfd Transcription-repa 98.6 5.9E-07 1.3E-11 100.0 15.2 159 36-212 590-758 (1139)
101 KOG0338|consensus 98.6 1.3E-06 2.8E-11 88.0 15.3 67 502-571 415-481 (691)
102 KOG0342|consensus 98.6 3.7E-06 8E-11 84.6 17.6 67 499-566 315-381 (543)
103 KOG0339|consensus 98.5 1.2E-05 2.5E-10 81.2 20.4 66 499-565 453-518 (731)
104 PRK15483 type III restriction- 98.5 1.6E-06 3.6E-11 96.1 15.9 144 61-208 61-240 (986)
105 PRK12906 secA preprotein trans 98.5 4.8E-06 1E-10 91.1 18.3 69 497-565 422-490 (796)
106 KOG0336|consensus 98.5 2.1E-05 4.6E-10 77.3 20.7 71 498-570 449-519 (629)
107 PF11496 HDA2-3: Class II hist 98.5 1.3E-06 2.9E-11 85.8 12.5 64 493-556 90-158 (297)
108 KOG0952|consensus 98.5 8.7E-07 1.9E-11 96.4 11.1 164 55-237 122-311 (1230)
109 KOG0334|consensus 98.5 5E-06 1.1E-10 91.1 16.9 67 498-565 597-663 (997)
110 TIGR00631 uvrb excinuclease AB 98.5 3.5E-05 7.5E-10 84.4 23.3 72 498-570 425-496 (655)
111 PF07652 Flavi_DEAD: Flaviviru 98.4 2.2E-06 4.8E-11 73.3 10.8 130 58-208 3-138 (148)
112 KOG0348|consensus 98.4 7.7E-05 1.7E-09 76.0 23.1 112 59-182 174-301 (708)
113 KOG0353|consensus 98.4 4.9E-06 1.1E-10 80.7 13.1 165 40-219 94-273 (695)
114 COG0610 Type I site-specific r 98.4 3.6E-06 7.8E-11 96.0 13.8 162 38-212 246-419 (962)
115 KOG0341|consensus 98.4 2.7E-06 5.9E-11 82.8 10.3 65 498-565 407-471 (610)
116 KOG1513|consensus 98.3 7.1E-06 1.5E-10 86.7 13.9 253 28-304 252-540 (1300)
117 PRK05298 excinuclease ABC subu 98.3 0.00036 7.8E-09 77.0 27.6 72 498-570 429-500 (652)
118 PRK12900 secA preprotein trans 98.3 4.1E-05 8.8E-10 84.8 19.0 66 498-565 581-646 (1025)
119 KOG0346|consensus 98.3 4.4E-05 9.5E-10 76.0 17.0 65 500-565 254-318 (569)
120 KOG0332|consensus 98.3 3.6E-05 7.7E-10 75.0 15.7 70 499-571 316-385 (477)
121 COG1110 Reverse gyrase [DNA re 98.2 1.1E-05 2.3E-10 88.2 12.1 125 40-180 82-215 (1187)
122 COG0556 UvrB Helicase subunit 98.1 0.0012 2.6E-08 67.8 24.0 66 500-565 431-496 (663)
123 KOG0351|consensus 98.1 4.8E-05 1E-09 85.3 15.6 167 40-223 264-447 (941)
124 PRK12326 preprotein translocas 98.1 0.00024 5.1E-09 76.6 19.9 70 498-568 410-479 (764)
125 COG4581 Superfamily II RNA hel 98.1 1.6E-05 3.6E-10 88.7 11.3 144 40-206 119-270 (1041)
126 PRK13103 secA preprotein trans 98.1 0.00022 4.8E-09 78.7 19.2 71 496-567 430-500 (913)
127 COG1203 CRISPR-associated heli 98.1 0.00017 3.7E-09 80.7 18.7 169 40-208 195-382 (733)
128 PRK11131 ATP-dependent RNA hel 98.0 0.00079 1.7E-08 77.9 23.0 55 514-571 285-342 (1294)
129 smart00489 DEXDc3 DEAD-like he 98.0 0.0001 2.2E-09 73.0 13.5 73 40-112 8-84 (289)
130 smart00488 DEXDc2 DEAD-like he 98.0 0.0001 2.2E-09 73.0 13.5 73 40-112 8-84 (289)
131 KOG0347|consensus 98.0 3.8E-05 8.3E-10 78.4 10.3 51 516-566 464-514 (731)
132 PF13086 AAA_11: AAA domain; P 98.0 5.1E-05 1.1E-09 72.7 10.7 68 40-111 1-75 (236)
133 PRK12899 secA preprotein trans 98.0 0.00012 2.6E-09 81.0 14.1 147 41-219 93-253 (970)
134 TIGR03117 cas_csf4 CRISPR-asso 97.9 0.00014 3.1E-09 78.6 14.2 78 45-123 2-85 (636)
135 TIGR01967 DEAH_box_HrpA ATP-de 97.9 0.00075 1.6E-08 78.3 19.5 65 504-571 267-335 (1283)
136 TIGR01407 dinG_rel DnaQ family 97.9 0.00014 3E-09 83.1 13.6 82 40-124 245-332 (850)
137 KOG0948|consensus 97.8 5.9E-05 1.3E-09 79.7 8.6 140 40-206 129-276 (1041)
138 KOG0947|consensus 97.8 6.8E-05 1.5E-09 81.3 9.2 139 40-205 297-443 (1248)
139 KOG0326|consensus 97.8 4.5E-05 9.7E-10 72.8 6.0 66 498-565 307-372 (459)
140 COG1198 PriA Primosomal protei 97.8 0.00028 6E-09 77.1 12.9 158 39-210 197-363 (730)
141 KOG0344|consensus 97.7 0.00044 9.6E-09 71.6 12.5 66 498-565 372-438 (593)
142 CHL00122 secA preprotein trans 97.6 0.011 2.4E-07 65.5 22.8 71 498-568 407-478 (870)
143 TIGR00604 rad3 DNA repair heli 97.6 0.00044 9.5E-09 77.5 12.3 73 40-112 10-83 (705)
144 PRK12902 secA preprotein trans 97.6 0.0043 9.4E-08 68.5 19.1 72 498-569 422-494 (939)
145 cd00079 HELICc Helicase superf 97.6 0.00025 5.5E-09 61.0 7.9 67 499-565 12-78 (131)
146 PRK14873 primosome assembly pr 97.6 0.00042 9.1E-09 75.9 10.8 130 68-210 169-307 (665)
147 KOG0951|consensus 97.5 0.00046 1E-08 77.1 9.9 151 56-218 322-494 (1674)
148 PF02562 PhoH: PhoH-like prote 97.5 0.00023 5.1E-09 65.8 6.1 153 40-210 4-159 (205)
149 PRK10536 hypothetical protein; 97.4 0.00075 1.6E-08 64.3 9.4 153 40-210 59-216 (262)
150 PRK12903 secA preprotein trans 97.4 0.0058 1.3E-07 67.3 17.2 63 497-560 408-470 (925)
151 TIGR00596 rad1 DNA repair prot 97.3 0.0087 1.9E-07 67.0 17.6 122 146-306 7-138 (814)
152 PF02399 Herpes_ori_bp: Origin 97.3 0.0041 9E-08 67.9 14.1 52 501-553 269-320 (824)
153 KOG0327|consensus 97.3 0.0068 1.5E-07 59.9 14.3 66 500-570 252-317 (397)
154 KOG0337|consensus 97.3 0.0044 9.6E-08 61.8 12.7 68 498-566 245-312 (529)
155 COG3587 Restriction endonuclea 97.2 0.0011 2.3E-08 71.7 8.8 133 61-206 76-242 (985)
156 PF13401 AAA_22: AAA domain; P 97.2 0.0006 1.3E-08 58.8 5.5 117 59-207 4-126 (131)
157 PRK07246 bifunctional ATP-depe 97.1 0.0059 1.3E-07 69.2 14.0 68 40-111 245-314 (820)
158 TIGR00376 DNA helicase, putati 97.1 0.0049 1.1E-07 67.8 12.9 76 38-121 155-231 (637)
159 KOG0352|consensus 97.1 0.01 2.2E-07 59.3 13.0 168 43-224 23-204 (641)
160 KOG1802|consensus 97.1 0.0029 6.2E-08 66.6 9.5 75 40-122 410-485 (935)
161 PRK08074 bifunctional ATP-depe 97.0 0.0076 1.6E-07 69.5 13.7 83 40-124 257-345 (928)
162 PF07517 SecA_DEAD: SecA DEAD- 97.0 0.01 2.3E-07 57.3 12.0 118 40-180 77-209 (266)
163 PRK12901 secA preprotein trans 97.0 0.15 3.2E-06 57.6 22.1 69 498-567 611-679 (1112)
164 PF13604 AAA_30: AAA domain; P 96.9 0.0077 1.7E-07 56.0 10.4 131 40-208 1-132 (196)
165 PF09848 DUF2075: Uncharacteri 96.9 0.0045 9.7E-08 63.4 9.4 48 63-111 5-53 (352)
166 PLN03208 E3 ubiquitin-protein 96.7 0.00045 9.7E-09 62.1 0.5 60 373-432 15-91 (193)
167 KOG1803|consensus 96.7 0.0037 8E-08 65.4 6.9 63 37-105 182-244 (649)
168 TIGR01447 recD exodeoxyribonuc 96.7 0.012 2.7E-07 63.8 11.2 145 43-208 148-297 (586)
169 KOG1805|consensus 96.6 0.02 4.2E-07 63.2 11.8 182 12-208 637-831 (1100)
170 TIGR02562 cas3_yersinia CRISPR 96.6 0.029 6.4E-07 63.2 13.3 112 18-131 388-505 (1110)
171 PRK10875 recD exonuclease V su 96.6 0.013 2.9E-07 63.8 10.5 146 42-208 154-303 (615)
172 PRK11747 dinG ATP-dependent DN 96.5 0.042 9.1E-07 61.4 14.5 82 40-123 25-117 (697)
173 cd00009 AAA The AAA+ (ATPases 96.5 0.045 9.7E-07 47.5 11.7 44 59-105 19-62 (151)
174 PRK11773 uvrD DNA-dependent he 96.5 0.48 1E-05 53.5 22.5 69 39-113 8-78 (721)
175 PF12340 DUF3638: Protein of u 96.4 0.011 2.5E-07 55.2 7.5 115 40-159 23-143 (229)
176 KOG0823|consensus 96.4 0.00086 1.9E-08 61.4 -0.0 61 372-432 43-107 (230)
177 PRK14956 DNA polymerase III su 96.4 0.03 6.6E-07 58.6 11.2 43 44-86 22-67 (484)
178 KOG1132|consensus 96.2 0.03 6.5E-07 61.2 10.6 46 32-77 13-58 (945)
179 PRK04296 thymidine kinase; Pro 96.2 0.017 3.7E-07 53.4 7.8 34 62-98 5-38 (190)
180 TIGR01448 recD_rel helicase, p 96.2 0.03 6.5E-07 62.7 11.0 133 39-208 322-454 (720)
181 TIGR01075 uvrD DNA helicase II 96.0 0.61 1.3E-05 52.6 20.4 68 40-113 4-73 (715)
182 TIGR02881 spore_V_K stage V sp 96.0 0.034 7.5E-07 54.3 9.0 26 61-86 44-69 (261)
183 PF15227 zf-C3HC4_4: zinc fing 95.9 0.0011 2.4E-08 44.3 -1.4 30 379-408 1-30 (42)
184 KOG0949|consensus 95.9 0.06 1.3E-06 59.5 10.8 161 41-219 512-682 (1330)
185 KOG0950|consensus 95.9 0.14 3E-06 56.8 13.5 154 40-211 223-392 (1008)
186 PRK06526 transposase; Provisio 95.9 0.078 1.7E-06 51.3 10.7 55 46-111 89-143 (254)
187 PRK07003 DNA polymerase III su 95.9 0.093 2E-06 57.7 12.2 42 45-86 21-65 (830)
188 PRK12323 DNA polymerase III su 95.9 0.12 2.5E-06 56.1 12.8 42 45-86 21-65 (700)
189 TIGR03420 DnaA_homol_Hda DnaA 95.8 0.13 2.8E-06 48.9 12.0 28 59-86 38-65 (226)
190 PF14835 zf-RING_6: zf-RING of 95.7 0.0046 1E-07 44.5 1.2 48 377-425 8-56 (65)
191 smart00382 AAA ATPases associa 95.7 0.057 1.2E-06 46.4 8.5 46 60-108 3-48 (148)
192 PRK09112 DNA polymerase III su 95.7 0.1 2.2E-06 53.1 11.2 42 45-86 28-72 (351)
193 smart00504 Ubox Modified RING 95.7 0.004 8.6E-08 46.0 0.8 45 377-421 2-47 (63)
194 PRK08181 transposase; Validate 95.7 0.24 5.2E-06 48.3 13.3 47 40-86 87-133 (269)
195 PRK14960 DNA polymerase III su 95.7 0.11 2.4E-06 56.4 11.7 42 45-86 20-64 (702)
196 KOG0298|consensus 95.6 0.0053 1.1E-07 69.2 1.7 69 498-572 1202-1272(1394)
197 PLN03025 replication factor C 95.6 0.22 4.7E-06 50.2 13.1 41 45-85 18-60 (319)
198 KOG0320|consensus 95.5 0.0026 5.6E-08 55.7 -0.9 51 375-425 130-183 (187)
199 PF13245 AAA_19: Part of AAA d 95.4 0.079 1.7E-06 40.7 7.2 45 59-104 10-56 (76)
200 PRK14949 DNA polymerase III su 95.4 0.17 3.7E-06 56.8 12.4 42 45-86 21-65 (944)
201 COG0653 SecA Preprotein transl 95.4 2.4 5.3E-05 47.3 21.1 53 498-550 412-464 (822)
202 PF13177 DNA_pol3_delta2: DNA 95.4 0.33 7.1E-06 43.5 12.2 45 45-89 2-49 (162)
203 PRK14952 DNA polymerase III su 95.4 0.18 3.8E-06 54.8 12.2 43 44-86 17-62 (584)
204 PRK07994 DNA polymerase III su 95.3 0.26 5.6E-06 54.0 13.4 42 45-86 21-65 (647)
205 PRK14958 DNA polymerase III su 95.3 0.21 4.5E-06 53.6 12.5 43 44-86 20-65 (509)
206 TIGR01073 pcrA ATP-dependent D 95.3 1.7 3.7E-05 49.2 20.6 67 40-112 4-72 (726)
207 COG1484 DnaC DNA replication p 95.2 0.27 5.9E-06 47.6 12.0 53 54-109 100-152 (254)
208 PRK08084 DNA replication initi 95.1 0.22 4.8E-06 47.7 11.1 41 46-86 30-72 (235)
209 TIGR02880 cbbX_cfxQ probable R 95.1 0.085 1.8E-06 52.1 8.3 37 61-97 60-97 (284)
210 PRK07940 DNA polymerase III su 95.1 0.19 4E-06 52.0 11.0 42 45-86 10-63 (394)
211 PRK05707 DNA polymerase III su 95.1 0.15 3.3E-06 51.4 10.0 47 41-87 4-50 (328)
212 CHL00181 cbbX CbbX; Provisiona 95.0 0.1 2.2E-06 51.6 8.6 40 62-101 62-102 (287)
213 PRK12723 flagellar biosynthesi 95.0 0.41 8.9E-06 49.2 13.2 129 62-222 177-313 (388)
214 PRK06871 DNA polymerase III su 95.0 0.33 7.1E-06 48.7 12.0 47 41-87 3-52 (325)
215 PRK08058 DNA polymerase III su 94.9 0.26 5.7E-06 49.8 11.5 132 41-205 7-148 (329)
216 COG1875 NYN ribonuclease and A 94.9 0.11 2.4E-06 51.6 8.1 57 40-98 228-284 (436)
217 PF05621 TniB: Bacterial TniB 94.9 0.37 8.1E-06 47.2 11.8 43 41-83 38-85 (302)
218 PRK14961 DNA polymerase III su 94.9 0.22 4.8E-06 51.2 10.9 42 44-85 20-64 (363)
219 PRK12402 replication factor C 94.9 0.18 4E-06 51.2 10.3 64 45-109 20-85 (337)
220 KOG0329|consensus 94.7 0.09 1.9E-06 49.2 6.7 132 63-206 83-227 (387)
221 KOG0951|consensus 94.7 0.16 3.5E-06 57.8 9.7 105 58-182 1158-1267(1674)
222 PRK08116 hypothetical protein; 94.7 0.55 1.2E-05 45.9 12.6 41 60-103 115-155 (268)
223 PRK06835 DNA replication prote 94.7 0.44 9.6E-06 48.0 12.1 47 40-86 160-210 (329)
224 KOG0738|consensus 94.6 0.17 3.7E-06 50.6 8.7 103 61-213 247-367 (491)
225 PRK08451 DNA polymerase III su 94.6 0.4 8.6E-06 51.4 12.1 42 45-86 19-63 (535)
226 KOG2164|consensus 94.6 0.012 2.6E-07 60.3 0.7 52 376-427 186-243 (513)
227 TIGR00599 rad18 DNA repair pro 94.6 0.0096 2.1E-07 60.5 -0.0 45 375-419 25-70 (397)
228 PRK14955 DNA polymerase III su 94.5 0.62 1.3E-05 48.5 13.3 42 45-86 21-65 (397)
229 PRK14951 DNA polymerase III su 94.5 0.28 6E-06 53.6 11.0 42 45-86 21-65 (618)
230 PRK07764 DNA polymerase III su 94.5 0.54 1.2E-05 53.3 13.5 42 45-86 20-64 (824)
231 PRK14962 DNA polymerase III su 94.5 0.25 5.4E-06 52.4 10.2 39 48-86 22-63 (472)
232 PRK08727 hypothetical protein; 94.4 0.35 7.6E-06 46.3 10.4 26 61-86 43-68 (233)
233 COG0464 SpoVK ATPases of the A 94.4 0.29 6.2E-06 52.7 10.9 67 40-112 249-323 (494)
234 PRK14957 DNA polymerase III su 94.3 0.33 7.2E-06 52.2 10.9 42 45-86 21-65 (546)
235 PRK14964 DNA polymerase III su 94.3 0.6 1.3E-05 49.5 12.5 133 45-208 18-157 (491)
236 TIGR03015 pepcterm_ATPase puta 94.3 0.81 1.8E-05 44.7 13.0 44 41-84 24-68 (269)
237 PRK05563 DNA polymerase III su 94.3 0.47 1E-05 51.6 12.1 72 45-123 21-95 (559)
238 COG3267 ExeA Type II secretory 94.3 0.33 7.1E-06 46.0 9.3 66 40-109 32-103 (269)
239 PRK06645 DNA polymerase III su 94.3 0.64 1.4E-05 49.7 12.8 43 44-86 25-70 (507)
240 PRK07993 DNA polymerase III su 94.2 0.44 9.5E-06 48.2 11.0 46 41-86 3-51 (334)
241 PRK14963 DNA polymerase III su 94.2 0.53 1.1E-05 50.4 12.0 42 45-86 19-63 (504)
242 PRK00149 dnaA chromosomal repl 94.2 0.64 1.4E-05 49.3 12.7 48 61-109 150-197 (450)
243 KOG0926|consensus 94.2 0.068 1.5E-06 57.9 5.1 143 52-213 264-431 (1172)
244 PRK11889 flhF flagellar biosyn 94.0 0.96 2.1E-05 46.3 12.6 124 62-221 244-377 (436)
245 PF13445 zf-RING_UBOX: RING-ty 93.9 0.0052 1.1E-07 41.1 -2.4 29 379-408 1-33 (43)
246 KOG0922|consensus 93.8 0.2 4.4E-06 53.4 7.8 149 52-221 59-220 (674)
247 TIGR00362 DnaA chromosomal rep 93.7 0.47 1E-05 49.6 10.6 36 61-97 138-173 (405)
248 cd01121 Sms Sms (bacterial rad 93.7 0.79 1.7E-05 47.0 11.9 87 62-181 85-171 (372)
249 PRK06893 DNA replication initi 93.7 0.4 8.7E-06 45.7 9.3 25 62-86 42-66 (229)
250 PF05876 Terminase_GpA: Phage 93.7 0.12 2.7E-06 56.0 6.3 172 32-219 8-192 (557)
251 PF13923 zf-C3HC4_2: Zinc fing 93.6 0.0085 1.9E-07 39.4 -1.7 30 379-408 1-31 (39)
252 PRK14088 dnaA chromosomal repl 93.6 1.4 3E-05 46.5 13.8 37 61-98 132-168 (440)
253 KOG0989|consensus 93.6 0.42 9.1E-06 46.5 8.9 43 43-85 39-83 (346)
254 PRK08691 DNA polymerase III su 93.5 1.8 4E-05 47.6 14.7 42 45-86 21-65 (709)
255 PRK05642 DNA replication initi 93.5 0.88 1.9E-05 43.5 11.2 27 60-86 46-72 (234)
256 PRK14969 DNA polymerase III su 93.5 1.4 3.1E-05 47.5 13.9 43 44-86 20-65 (527)
257 PRK05703 flhF flagellar biosyn 93.5 1 2.3E-05 47.1 12.5 55 168-223 299-359 (424)
258 PRK06090 DNA polymerase III su 93.4 1.2 2.6E-05 44.6 12.1 48 40-87 3-53 (319)
259 TIGR02928 orc1/cdc6 family rep 93.4 1.1 2.5E-05 45.9 12.6 46 41-86 19-67 (365)
260 PRK14087 dnaA chromosomal repl 93.3 0.95 2.1E-05 47.9 12.0 49 60-109 142-190 (450)
261 KOG0287|consensus 93.3 0.0096 2.1E-07 57.3 -2.6 43 377-419 24-67 (442)
262 PRK06921 hypothetical protein; 93.3 1.2 2.7E-05 43.4 12.0 28 59-86 117-144 (266)
263 PRK14974 cell division protein 93.2 1.7 3.7E-05 43.9 13.1 47 62-111 143-193 (336)
264 PHA02929 N1R/p28-like protein; 93.2 0.032 6.8E-07 52.7 0.6 46 374-419 172-226 (238)
265 PRK14086 dnaA chromosomal repl 93.2 0.82 1.8E-05 49.6 11.2 103 61-209 316-422 (617)
266 PRK07133 DNA polymerase III su 93.1 0.71 1.5E-05 51.1 10.9 43 44-86 22-67 (725)
267 PRK14948 DNA polymerase III su 93.1 0.8 1.7E-05 50.4 11.3 43 44-86 20-65 (620)
268 KOG0740|consensus 93.0 0.96 2.1E-05 46.6 11.0 46 61-112 188-233 (428)
269 COG1643 HrpA HrpA-like helicas 93.0 0.26 5.7E-06 55.3 7.6 147 53-218 59-217 (845)
270 PRK12422 chromosomal replicati 93.0 0.65 1.4E-05 48.9 10.2 39 60-101 142-180 (445)
271 PRK07471 DNA polymerase III su 93.0 1.4 3.1E-05 45.1 12.4 43 45-87 24-69 (365)
272 PRK09183 transposase/IS protei 93.0 2.3 5E-05 41.4 13.3 38 57-97 100-137 (259)
273 PHA02544 44 clamp loader, smal 93.0 0.94 2E-05 45.5 11.0 21 63-83 47-67 (316)
274 COG1066 Sms Predicted ATP-depe 92.9 0.73 1.6E-05 46.8 9.6 86 63-182 97-182 (456)
275 KOG2879|consensus 92.9 0.038 8.2E-07 52.0 0.7 49 372-420 235-287 (298)
276 PF13920 zf-C3HC4_3: Zinc fing 92.9 0.012 2.7E-07 41.0 -2.0 44 376-419 2-47 (50)
277 PRK07952 DNA replication prote 92.8 0.93 2E-05 43.6 10.1 62 43-111 79-144 (244)
278 smart00490 HELICc helicase sup 92.8 0.19 4E-06 38.6 4.5 37 530-566 2-38 (82)
279 KOG0920|consensus 92.8 1.3 2.8E-05 50.0 12.4 177 41-237 174-362 (924)
280 PRK06647 DNA polymerase III su 92.6 1.3 2.9E-05 48.0 12.2 42 45-86 21-65 (563)
281 PRK05986 cob(I)alamin adenolsy 92.6 3 6.4E-05 38.2 12.5 140 58-219 21-170 (191)
282 KOG0317|consensus 92.6 0.026 5.6E-07 53.6 -0.8 47 373-419 236-283 (293)
283 PRK14953 DNA polymerase III su 92.6 1.4 3.1E-05 47.0 12.1 42 44-85 20-64 (486)
284 PRK14950 DNA polymerase III su 92.6 1.2 2.7E-05 48.8 12.0 41 45-85 21-64 (585)
285 PRK05896 DNA polymerase III su 92.6 2 4.3E-05 46.7 13.1 42 45-86 21-65 (605)
286 PRK08769 DNA polymerase III su 92.5 2.3 4.9E-05 42.7 12.8 49 39-87 3-54 (319)
287 PHA02533 17 large terminase pr 92.5 1.1 2.4E-05 48.2 11.4 55 39-98 58-112 (534)
288 cd01124 KaiC KaiC is a circadi 92.5 0.81 1.8E-05 41.8 9.1 47 63-112 3-49 (187)
289 PRK14959 DNA polymerase III su 92.5 1.5 3.3E-05 47.8 12.2 42 45-86 21-65 (624)
290 PRK14965 DNA polymerase III su 92.5 2.3 5E-05 46.5 13.8 42 45-86 21-65 (576)
291 PRK14954 DNA polymerase III su 92.5 1.2 2.5E-05 49.0 11.4 42 45-86 21-65 (620)
292 TIGR02768 TraA_Ti Ti-type conj 92.4 0.92 2E-05 51.2 11.0 59 39-103 351-409 (744)
293 PRK09111 DNA polymerase III su 92.2 1.4 3E-05 48.2 11.7 43 44-86 28-73 (598)
294 COG1199 DinG Rad3-related DNA 92.1 0.5 1.1E-05 52.9 8.5 70 39-110 14-84 (654)
295 PRK00411 cdc6 cell division co 92.0 3.5 7.6E-05 42.8 14.2 63 25-87 16-83 (394)
296 cd00561 CobA_CobO_BtuR ATP:cor 92.0 2.7 5.8E-05 37.4 11.2 135 62-218 5-149 (159)
297 PRK06904 replicative DNA helic 92.0 2.2 4.7E-05 45.5 12.6 120 56-182 218-348 (472)
298 PF00271 Helicase_C: Helicase 92.0 0.16 3.5E-06 39.0 3.2 36 534-570 2-37 (78)
299 PF00004 AAA: ATPase family as 91.9 0.61 1.3E-05 39.7 7.1 34 63-102 2-35 (132)
300 KOG0739|consensus 91.9 1 2.3E-05 43.5 8.9 46 61-112 168-213 (439)
301 TIGR03689 pup_AAA proteasome A 91.6 0.75 1.6E-05 49.0 8.6 28 58-85 215-242 (512)
302 COG5574 PEX10 RING-finger-cont 91.5 0.059 1.3E-06 50.6 0.2 49 374-422 213-264 (271)
303 PF00580 UvrD-helicase: UvrD/R 91.5 0.41 8.9E-06 47.8 6.4 65 41-111 1-67 (315)
304 PF04564 U-box: U-box domain; 91.5 0.054 1.2E-06 41.2 -0.0 47 375-421 3-51 (73)
305 PHA03372 DNA packaging termina 91.4 0.9 2E-05 48.6 8.7 126 66-209 209-340 (668)
306 PF00308 Bac_DnaA: Bacterial d 91.4 5.1 0.00011 37.8 13.3 35 62-97 37-71 (219)
307 TIGR03345 VI_ClpV1 type VI sec 91.3 1.4 3.1E-05 50.5 11.0 41 45-85 192-234 (852)
308 cd01120 RecA-like_NTPases RecA 91.3 3.3 7.2E-05 36.4 11.6 34 63-99 3-36 (165)
309 TIGR00678 holB DNA polymerase 91.3 2.7 5.8E-05 38.6 11.1 25 62-86 17-41 (188)
310 PHA03333 putative ATPase subun 91.2 5.1 0.00011 43.9 14.2 60 46-108 175-235 (752)
311 PRK08903 DnaA regulatory inact 91.2 2.4 5.3E-05 40.2 11.1 28 59-86 42-69 (227)
312 KOG0737|consensus 91.1 0.65 1.4E-05 46.4 6.9 52 55-112 123-174 (386)
313 PRK00440 rfc replication facto 91.1 3.1 6.8E-05 41.7 12.4 41 45-85 22-64 (319)
314 PTZ00112 origin recognition co 91.1 4.6 0.0001 45.6 13.9 51 33-85 753-807 (1164)
315 PRK12377 putative replication 91.0 2.1 4.6E-05 41.2 10.3 62 60-124 102-172 (248)
316 PF13173 AAA_14: AAA domain 90.9 2.1 4.6E-05 36.5 9.4 37 168-208 61-100 (128)
317 COG3421 Uncharacterized protei 90.7 0.32 6.8E-06 51.3 4.6 108 66-181 4-125 (812)
318 PF00448 SRP54: SRP54-type pro 90.7 2.6 5.7E-05 39.0 10.4 129 63-221 5-140 (196)
319 TIGR03346 chaperone_ClpB ATP-d 90.7 1.5 3.3E-05 50.5 10.5 41 45-85 178-220 (852)
320 PF14634 zf-RING_5: zinc-RING 90.7 0.068 1.5E-06 36.1 -0.2 36 379-414 2-41 (44)
321 PRK12724 flagellar biosynthesi 90.7 3.9 8.5E-05 42.4 12.3 87 164-251 295-400 (432)
322 PRK08760 replicative DNA helic 90.5 2.2 4.8E-05 45.5 10.9 53 59-113 229-281 (476)
323 TIGR02639 ClpA ATP-dependent C 90.5 2.1 4.5E-05 48.4 11.3 40 47-86 189-230 (731)
324 PRK13342 recombination factor 90.4 2.3 5.1E-05 44.5 10.9 23 61-83 38-60 (413)
325 KOG1813|consensus 90.4 0.1 2.2E-06 49.8 0.6 39 377-415 242-281 (313)
326 PRK04195 replication factor C 90.3 3.5 7.6E-05 44.2 12.4 25 59-83 39-63 (482)
327 PRK09376 rho transcription ter 90.3 1.4 3E-05 45.1 8.6 29 58-86 168-196 (416)
328 PF00097 zf-C3HC4: Zinc finger 90.3 0.039 8.5E-07 36.6 -1.6 30 379-408 1-31 (41)
329 PRK14722 flhF flagellar biosyn 90.3 4.7 0.0001 41.3 12.5 125 61-219 139-270 (374)
330 TIGR02782 TrbB_P P-type conjug 90.2 5.4 0.00012 39.7 12.8 127 50-219 123-249 (299)
331 cd01128 rho_factor Transcripti 90.2 1.6 3.4E-05 42.2 8.7 29 57-85 14-42 (249)
332 COG5432 RAD18 RING-finger-cont 90.1 0.082 1.8E-06 49.9 -0.2 45 377-421 26-71 (391)
333 CHL00095 clpC Clp protease ATP 90.0 2 4.3E-05 49.3 10.8 27 59-85 200-226 (821)
334 PRK06305 DNA polymerase III su 90.0 3.7 8E-05 43.5 12.0 42 45-86 22-66 (451)
335 PRK08533 flagellar accessory p 90.0 4.4 9.6E-05 38.6 11.6 48 59-109 24-71 (230)
336 PRK06964 DNA polymerase III su 90.0 3.2 6.9E-05 42.0 11.0 47 41-87 2-49 (342)
337 KOG0733|consensus 89.9 2.7 5.8E-05 45.0 10.4 47 59-111 545-591 (802)
338 PRK08840 replicative DNA helic 89.9 3.8 8.2E-05 43.5 12.0 54 57-112 215-268 (464)
339 TIGR00708 cobA cob(I)alamin ad 89.9 3.8 8.2E-05 37.0 10.2 58 162-219 91-152 (173)
340 PHA03368 DNA packaging termina 89.6 2.3 4.9E-05 46.3 9.9 131 61-210 256-394 (738)
341 PRK13889 conjugal transfer rel 89.5 3 6.6E-05 48.2 11.6 127 40-209 346-473 (988)
342 TIGR02688 conserved hypothetic 89.3 1.8 4E-05 44.6 8.6 29 54-82 204-232 (449)
343 PRK11823 DNA repair protein Ra 89.3 1.8 3.8E-05 45.8 9.0 87 62-181 83-169 (446)
344 PTZ00454 26S protease regulato 89.2 0.85 1.9E-05 47.3 6.4 42 58-105 178-219 (398)
345 KOG0925|consensus 89.1 0.97 2.1E-05 46.6 6.4 51 167-221 158-216 (699)
346 CHL00206 ycf2 Ycf2; Provisiona 89.1 1.4 3.1E-05 53.3 8.6 41 59-105 1630-1670(2281)
347 COG1222 RPT1 ATP-dependent 26S 89.0 0.93 2E-05 45.2 6.1 44 57-106 183-226 (406)
348 TIGR00570 cdk7 CDK-activating 89.0 0.14 3.1E-06 49.9 0.5 49 375-423 2-57 (309)
349 TIGR02397 dnaX_nterm DNA polym 89.0 3.4 7.4E-05 42.2 10.8 43 44-86 18-63 (355)
350 PRK03992 proteasome-activating 88.9 0.92 2E-05 47.1 6.5 41 59-105 165-205 (389)
351 PRK10865 protein disaggregatio 88.9 2.3 5E-05 48.9 10.2 41 45-85 183-225 (857)
352 PRK12727 flagellar biosynthesi 88.8 9.1 0.0002 41.0 13.6 35 62-97 353-387 (559)
353 PRK06731 flhF flagellar biosyn 88.7 7.9 0.00017 37.8 12.3 126 60-221 76-211 (270)
354 PF06733 DEAD_2: DEAD_2; Inte 88.6 0.45 9.8E-06 43.2 3.5 38 145-182 118-159 (174)
355 PRK07004 replicative DNA helic 88.6 2.3 4.9E-05 45.2 9.3 114 61-182 215-338 (460)
356 COG1223 Predicted ATPase (AAA+ 88.5 1.1 2.3E-05 42.7 5.8 42 59-106 151-192 (368)
357 TIGR00416 sms DNA repair prote 88.5 4.3 9.3E-05 43.0 11.2 87 62-181 97-183 (454)
358 PF06564 YhjQ: YhjQ protein; 88.5 1.2 2.7E-05 42.5 6.4 97 63-178 6-127 (243)
359 PRK09165 replicative DNA helic 88.3 3.7 7.9E-05 44.1 10.7 116 61-182 219-355 (497)
360 PRK08006 replicative DNA helic 88.2 5.7 0.00012 42.3 11.9 53 58-112 223-275 (471)
361 CHL00176 ftsH cell division pr 88.1 4.7 0.0001 44.6 11.5 25 59-83 216-240 (638)
362 PF00265 TK: Thymidine kinase; 88.1 1.2 2.5E-05 40.6 5.7 34 63-99 5-38 (176)
363 PF13481 AAA_25: AAA domain; P 88.0 3.3 7.1E-05 38.0 9.0 55 59-113 32-93 (193)
364 PTZ00293 thymidine kinase; Pro 87.9 4.3 9.3E-05 37.9 9.5 34 63-99 8-41 (211)
365 PRK07276 DNA polymerase III su 87.9 8.4 0.00018 38.0 12.1 47 40-87 2-50 (290)
366 TIGR01243 CDC48 AAA family ATP 87.9 1.7 3.7E-05 49.2 8.3 42 59-106 487-528 (733)
367 PF00437 T2SE: Type II/IV secr 87.9 11 0.00024 36.8 13.1 127 50-222 118-245 (270)
368 COG5152 Uncharacterized conser 87.9 0.11 2.3E-06 46.3 -1.1 33 377-409 197-229 (259)
369 cd01125 repA Hexameric Replica 87.7 11 0.00023 36.1 12.6 38 61-98 3-49 (239)
370 KOG0991|consensus 87.5 3.5 7.6E-05 38.7 8.4 25 61-85 50-74 (333)
371 PRK13341 recombination factor 87.5 5.7 0.00012 44.6 11.8 23 61-83 54-76 (725)
372 PRK00771 signal recognition pa 87.4 3.2 7E-05 43.5 9.3 35 61-98 97-131 (437)
373 KOG1131|consensus 87.4 2.5 5.5E-05 44.1 8.1 71 40-110 16-88 (755)
374 KOG0978|consensus 87.4 0.097 2.1E-06 56.6 -1.9 31 375-405 642-672 (698)
375 COG0470 HolB ATPase involved i 87.3 6.3 0.00014 39.5 11.3 26 62-87 27-52 (325)
376 PRK14971 DNA polymerase III su 87.2 11 0.00023 41.7 13.6 41 45-85 22-65 (614)
377 smart00184 RING Ring finger. E 87.2 0.19 4.2E-06 32.2 0.1 28 379-406 1-28 (39)
378 PRK05748 replicative DNA helic 87.2 6.2 0.00013 41.8 11.5 114 60-181 204-327 (448)
379 KOG0924|consensus 87.1 1.6 3.4E-05 47.0 6.6 29 52-80 364-392 (1042)
380 cd02037 MRP-like MRP (Multiple 87.1 6.5 0.00014 35.3 10.2 52 167-222 66-117 (169)
381 TIGR01242 26Sp45 26S proteasom 86.9 1.4 3E-05 45.3 6.3 25 59-83 156-180 (364)
382 PF01695 IstB_IS21: IstB-like 86.8 1 2.3E-05 41.0 4.8 47 57-110 45-91 (178)
383 PRK13826 Dtr system oriT relax 86.7 4.4 9.5E-05 47.3 10.6 128 40-210 381-509 (1102)
384 TIGR00665 DnaB replicative DNA 86.7 8.2 0.00018 40.7 12.2 48 61-110 197-244 (434)
385 COG2256 MGS1 ATPase related to 86.6 3.2 7E-05 42.1 8.3 20 62-81 51-70 (436)
386 PRK06067 flagellar accessory p 86.6 13 0.00029 35.4 12.5 48 62-112 28-75 (234)
387 TIGR03600 phage_DnaB phage rep 86.5 4.4 9.6E-05 42.6 10.0 48 61-110 196-243 (421)
388 PRK08939 primosomal protein Dn 86.5 4.2 9.2E-05 40.6 9.3 43 59-104 156-198 (306)
389 KOG1785|consensus 86.4 0.24 5.2E-06 49.0 0.3 41 379-419 372-415 (563)
390 COG2812 DnaX DNA polymerase II 86.4 2.8 6E-05 44.7 8.1 43 45-87 21-66 (515)
391 PRK08506 replicative DNA helic 86.3 6.5 0.00014 41.9 11.1 48 61-111 194-241 (472)
392 PRK05564 DNA polymerase III su 86.2 7.5 0.00016 39.0 11.0 42 45-86 9-53 (313)
393 TIGR00767 rho transcription te 86.1 4.1 8.8E-05 41.9 8.9 30 57-86 166-195 (415)
394 COG4626 Phage terminase-like p 86.0 4.1 8.9E-05 43.2 9.0 137 35-192 56-207 (546)
395 PF02456 Adeno_IVa2: Adenoviru 85.9 1.8 3.8E-05 42.3 5.8 112 62-194 90-222 (369)
396 PRK13894 conjugal transfer ATP 85.9 15 0.00033 36.9 12.8 127 51-221 140-266 (319)
397 PF05496 RuvB_N: Holliday junc 85.8 4.9 0.00011 37.8 8.6 22 62-83 53-74 (233)
398 KOG0952|consensus 85.8 0.66 1.4E-05 52.2 3.3 108 61-183 945-1061(1230)
399 TIGR01074 rep ATP-dependent DN 85.7 3.6 7.7E-05 46.2 9.2 67 41-113 2-70 (664)
400 PRK11034 clpA ATP-dependent Cl 85.6 5 0.00011 45.3 10.2 27 59-85 207-233 (758)
401 PHA02926 zinc finger-like prot 85.6 0.21 4.6E-06 45.8 -0.4 51 369-419 163-229 (242)
402 cd03115 SRP The signal recogni 85.5 8.9 0.00019 34.5 10.3 24 63-86 4-27 (173)
403 COG4098 comFA Superfamily II D 85.5 2.2 4.8E-05 42.2 6.3 63 493-555 122-186 (441)
404 TIGR01241 FtsH_fam ATP-depende 85.5 2.7 6E-05 45.2 7.9 24 59-82 88-111 (495)
405 KOG1807|consensus 85.4 2.6 5.6E-05 46.1 7.3 79 40-124 378-460 (1025)
406 PRK05636 replicative DNA helic 85.4 5.8 0.00013 42.5 10.2 113 62-182 268-389 (505)
407 PRK12608 transcription termina 85.2 5.9 0.00013 40.4 9.5 38 48-86 123-160 (380)
408 TIGR00635 ruvB Holliday juncti 85.2 3.7 8E-05 40.9 8.3 23 61-83 32-54 (305)
409 TIGR00365 monothiol glutaredox 85.1 6.9 0.00015 31.5 8.3 61 508-569 5-71 (97)
410 TIGR02640 gas_vesic_GvpN gas v 84.9 2.5 5.5E-05 41.2 6.7 41 43-83 5-45 (262)
411 PHA00012 I assembly protein 84.8 2.1 4.7E-05 42.3 5.9 38 63-105 5-42 (361)
412 COG0630 VirB11 Type IV secreto 84.5 8.4 0.00018 38.6 10.3 135 40-220 127-262 (312)
413 cd01122 GP4d_helicase GP4d_hel 84.5 6.3 0.00014 38.5 9.4 52 58-111 29-80 (271)
414 PRK12726 flagellar biosynthesi 84.4 29 0.00062 35.7 13.9 44 63-109 210-257 (407)
415 PRK13709 conjugal transfer nic 84.4 9.7 0.00021 46.9 12.4 136 37-208 964-1101(1747)
416 KOG4265|consensus 84.4 0.2 4.3E-06 49.4 -1.2 48 374-421 288-337 (349)
417 COG3973 Superfamily I DNA and 84.4 2.3 4.9E-05 45.4 6.3 67 38-109 210-279 (747)
418 COG1419 FlhF Flagellar GTP-bin 84.2 30 0.00065 35.6 14.0 124 62-224 206-341 (407)
419 PLN00020 ribulose bisphosphate 84.2 1.4 3.1E-05 44.5 4.6 49 57-111 146-194 (413)
420 PRK14712 conjugal transfer nic 83.6 11 0.00024 45.9 12.2 140 36-211 831-972 (1623)
421 PRK10919 ATP-dependent DNA hel 83.4 2.1 4.6E-05 47.8 6.1 67 41-113 3-71 (672)
422 cd00984 DnaB_C DnaB helicase C 83.3 13 0.00029 35.4 11.0 41 58-100 12-52 (242)
423 KOG0736|consensus 83.3 8.4 0.00018 42.5 10.1 29 57-85 703-731 (953)
424 PRK00080 ruvB Holliday junctio 83.3 32 0.0007 34.6 14.2 44 41-84 29-76 (328)
425 PTZ00361 26 proteosome regulat 83.2 3.8 8.3E-05 43.0 7.5 41 58-104 216-256 (438)
426 PRK06321 replicative DNA helic 83.2 10 0.00022 40.3 10.8 117 57-181 224-349 (472)
427 CHL00195 ycf46 Ycf46; Provisio 83.0 2.1 4.6E-05 45.6 5.7 37 58-100 258-294 (489)
428 PRK08699 DNA polymerase III su 83.0 23 0.00049 35.7 12.7 46 41-86 2-48 (325)
429 PRK10416 signal recognition pa 82.9 19 0.00042 36.1 12.1 33 63-98 118-150 (318)
430 TIGR01243 CDC48 AAA family ATP 82.6 6.5 0.00014 44.6 9.7 25 59-83 212-236 (733)
431 TIGR00959 ffh signal recogniti 82.6 10 0.00022 39.7 10.4 36 62-99 102-137 (428)
432 KOG0651|consensus 82.6 2.3 5E-05 41.6 5.1 45 57-107 164-208 (388)
433 COG0552 FtsY Signal recognitio 82.4 7.4 0.00016 38.7 8.6 119 63-212 143-275 (340)
434 PRK10867 signal recognition pa 82.3 13 0.00027 39.1 10.9 44 62-107 103-150 (433)
435 TIGR03878 thermo_KaiC_2 KaiC d 82.1 11 0.00025 36.5 10.0 33 63-98 40-72 (259)
436 PF03354 Terminase_1: Phage Te 81.9 3.9 8.5E-05 43.7 7.3 146 43-208 1-164 (477)
437 PRK05595 replicative DNA helic 81.9 6.1 0.00013 41.8 8.6 114 61-182 203-325 (444)
438 PRK11054 helD DNA helicase IV; 81.8 2.9 6.3E-05 46.7 6.3 69 39-113 195-265 (684)
439 TIGR00064 ftsY signal recognit 81.8 26 0.00057 34.3 12.4 33 63-98 76-108 (272)
440 KOG0730|consensus 81.8 5.5 0.00012 43.1 7.9 49 57-111 466-514 (693)
441 COG1474 CDC6 Cdc6-related prot 81.7 10 0.00022 39.0 9.7 49 40-88 20-71 (366)
442 COG1435 Tdk Thymidine kinase [ 81.7 8.5 0.00019 35.2 8.1 108 63-205 8-118 (201)
443 COG0305 DnaB Replicative DNA h 81.5 11 0.00023 39.3 9.8 125 52-184 189-322 (435)
444 KOG4692|consensus 81.4 0.53 1.1E-05 45.9 0.4 43 368-410 414-456 (489)
445 PF06068 TIP49: TIP49 C-termin 81.3 3 6.5E-05 42.1 5.6 60 35-100 24-87 (398)
446 PF02702 KdpD: Osmosensitive K 80.8 5.5 0.00012 36.6 6.6 27 61-87 7-33 (211)
447 PHA02542 41 41 helicase; Provi 80.7 12 0.00026 39.9 10.2 46 61-109 192-237 (473)
448 TIGR02655 circ_KaiC circadian 80.6 8.4 0.00018 41.3 9.2 48 62-112 266-313 (484)
449 COG1110 Reverse gyrase [DNA re 80.4 26 0.00057 40.1 12.7 77 488-565 96-181 (1187)
450 COG1702 PhoH Phosphate starvat 80.3 1.4 3E-05 43.8 2.8 40 169-210 244-283 (348)
451 KOG1942|consensus 80.1 4.2 9.1E-05 39.4 5.8 61 26-86 29-91 (456)
452 PF05970 PIF1: PIF1-like helic 80.1 4 8.6E-05 41.9 6.3 61 40-103 1-63 (364)
453 PF03796 DnaB_C: DnaB-like hel 79.9 5.4 0.00012 38.7 7.0 118 57-183 17-145 (259)
454 cd03418 GRX_GRXb_1_3_like Glut 79.9 9.3 0.0002 28.7 6.9 55 517-571 1-56 (75)
455 KOG0734|consensus 79.9 12 0.00026 39.6 9.3 59 164-227 392-463 (752)
456 COG0541 Ffh Signal recognition 79.5 6.3 0.00014 40.6 7.2 104 62-194 103-207 (451)
457 TIGR00595 priA primosomal prot 79.1 9.9 0.00021 40.9 9.1 69 496-564 6-75 (505)
458 TIGR01425 SRP54_euk signal rec 78.9 57 0.0012 34.2 14.2 33 63-98 104-136 (429)
459 PRK07399 DNA polymerase III su 78.9 25 0.00054 35.3 11.4 42 45-86 9-53 (314)
460 COG2255 RuvB Holliday junction 78.7 4.5 9.8E-05 39.2 5.6 24 62-85 55-78 (332)
461 PRK07414 cob(I)yrinic acid a,c 78.5 17 0.00038 32.8 9.0 130 62-216 24-167 (178)
462 PF13639 zf-RING_2: Ring finge 78.5 0.3 6.6E-06 32.9 -1.7 29 378-406 2-33 (44)
463 COG0593 DnaA ATPase involved i 78.2 6.6 0.00014 40.5 7.1 64 59-124 113-184 (408)
464 PRK04132 replication factor C 78.1 9.9 0.00022 43.3 9.0 52 168-221 630-684 (846)
465 COG1224 TIP49 DNA helicase TIP 77.4 5 0.00011 40.1 5.6 58 29-86 33-92 (450)
466 KOG0652|consensus 77.1 4 8.6E-05 38.8 4.6 43 57-105 203-245 (424)
467 PRK10490 sensor protein KdpD; 77.1 25 0.00053 41.0 12.2 27 61-87 26-52 (895)
468 COG0003 ArsA Predicted ATPase 76.6 8.4 0.00018 38.6 7.2 33 64-99 7-40 (322)
469 PRK07773 replicative DNA helic 76.6 12 0.00026 43.5 9.4 49 61-111 219-267 (886)
470 PRK05973 replicative DNA helic 76.5 6.3 0.00014 37.6 6.0 46 61-109 66-111 (237)
471 TIGR02974 phageshock_pspF psp 76.4 23 0.0005 35.8 10.4 47 56-105 19-65 (329)
472 PRK13833 conjugal transfer pro 76.4 6.5 0.00014 39.5 6.3 134 41-221 129-262 (323)
473 KOG0349|consensus 75.9 5.4 0.00012 40.6 5.5 51 515-565 505-558 (725)
474 cd03028 GRX_PICOT_like Glutare 75.8 14 0.00031 29.1 7.1 55 515-570 7-67 (90)
475 cd01131 PilT Pilus retraction 75.5 11 0.00024 34.9 7.4 24 62-85 4-27 (198)
476 TIGR02237 recomb_radB DNA repa 75.2 26 0.00056 32.6 9.9 44 63-109 16-59 (209)
477 PRK14723 flhF flagellar biosyn 75.2 25 0.00054 39.6 10.9 151 63-249 189-362 (767)
478 PF01443 Viral_helicase1: Vira 75.0 6.7 0.00014 37.2 6.0 42 168-212 62-103 (234)
479 KOG0780|consensus 75.0 6.2 0.00014 39.9 5.6 48 63-113 105-152 (483)
480 PRK10733 hflB ATP-dependent me 75.0 13 0.00028 41.5 8.8 36 59-100 185-220 (644)
481 PRK13764 ATPase; Provisional 74.9 37 0.0008 37.2 12.0 29 57-85 255-283 (602)
482 COG2205 KdpD Osmosensitive K+ 74.9 27 0.0006 39.0 10.8 27 61-87 24-50 (890)
483 KOG0732|consensus 74.5 6.3 0.00014 45.3 6.2 52 57-111 297-350 (1080)
484 KOG2177|consensus 74.5 0.8 1.7E-05 46.0 -0.7 43 374-416 11-54 (386)
485 TIGR01547 phage_term_2 phage t 74.4 18 0.0004 37.5 9.5 46 161-208 93-142 (396)
486 KOG1133|consensus 74.2 6.2 0.00013 42.8 5.7 42 37-78 12-53 (821)
487 cd00162 RING RING-finger (Real 74.2 1.1 2.4E-05 29.6 0.2 30 378-407 1-31 (45)
488 TIGR00150 HI0065_YjeE ATPase, 74.1 7.2 0.00016 33.5 5.2 32 54-85 17-48 (133)
489 KOG0297|consensus 74.0 2 4.4E-05 44.4 2.1 52 374-425 19-72 (391)
490 TIGR03499 FlhF flagellar biosy 73.9 17 0.00037 35.8 8.6 35 63-98 198-232 (282)
491 PRK13849 putative crown gall t 73.9 35 0.00076 32.5 10.4 43 63-108 6-50 (231)
492 PRK13900 type IV secretion sys 73.8 7.1 0.00015 39.5 5.9 130 49-219 150-280 (332)
493 KOG0923|consensus 73.3 7.3 0.00016 42.1 5.9 51 167-217 377-431 (902)
494 PF08433 KTI12: Chromatin asso 73.3 20 0.00043 35.0 8.7 104 63-206 5-108 (270)
495 PRK10824 glutaredoxin-4; Provi 73.3 21 0.00045 29.8 7.6 62 505-568 5-72 (115)
496 TIGR02012 tigrfam_recA protein 72.7 26 0.00057 35.1 9.5 41 61-104 57-97 (321)
497 PF05127 Helicase_RecD: Helica 72.5 2.8 6.1E-05 37.9 2.4 35 168-208 90-125 (177)
498 PHA02518 ParA-like protein; Pr 72.4 31 0.00068 31.9 9.8 42 63-107 5-48 (211)
499 PF00158 Sigma54_activat: Sigm 72.2 20 0.00043 32.3 7.8 51 52-105 15-65 (168)
500 PRK09087 hypothetical protein; 72.2 28 0.0006 33.0 9.3 40 170-209 89-129 (226)
No 1
>KOG0385|consensus
Probab=100.00 E-value=3.4e-72 Score=570.66 Aligned_cols=386 Identities=44% Similarity=0.783 Sum_probs=341.3
Q ss_pred CCCchhh-hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHH
Q psy13010 32 PQPGLFR-GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEME 110 (573)
Q Consensus 32 ~~p~~l~-~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~ 110 (573)
.+|..++ ++|+|||.+|++||+.++..+.+||||||||+|||+++|+++.++....+..||+||+||.+.+.+|++||.
T Consensus 158 ~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~ 237 (971)
T KOG0385|consen 158 DSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFK 237 (971)
T ss_pred CCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHH
Confidence 3899998 699999999999999999999999999999999999999999999997788899999999999999999999
Q ss_pred HHCCCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHH
Q psy13010 111 RFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKL 190 (573)
Q Consensus 111 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~ 190 (573)
+|+|++++++|+|.+..+..+.+-. -..+.|+|+||||+.+-++.+.|..+.|.++||||+|++||..|..++.
T Consensus 238 rf~P~l~~~~~~Gdk~eR~~~~r~~------~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~ 311 (971)
T KOG0385|consen 238 RFTPSLNVVVYHGDKEERAALRRDI------MLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKI 311 (971)
T ss_pred HhCCCcceEEEeCCHHHHHHHHHHh------hccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHH
Confidence 9999999999999998888776532 2225899999999999999999999999999999999999999999999
Q ss_pred HHhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccHHHHHHHHHhhccceeecc
Q psy13010 191 LLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRI 270 (573)
Q Consensus 191 ~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~ 270 (573)
++.+.+.+|+||||||++|+++|||++++||.|..|++...|..+|......+ +......|+.+|+||++||.
T Consensus 312 lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~-------~~e~v~~Lh~vL~pFlLRR~ 384 (971)
T KOG0385|consen 312 LREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEG-------DQELVSRLHKVLRPFLLRRI 384 (971)
T ss_pred HHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccccc-------CHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999997643222 33478889999999999999
Q ss_pred ccchhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHHHHHHHHhcCCcccccccc
Q psy13010 271 KKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRD 350 (573)
Q Consensus 271 k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~c~hp~l~~~~~ 350 (573)
|.++...|||+.+..++|.||+.|++.|..++..- +-.....+.. ....+++.+++||+||+||+|+..-+
T Consensus 385 K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kd----l~~~n~~~~~-----~k~kL~NI~mQLRKccnHPYLF~g~e 455 (971)
T KOG0385|consen 385 KSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKD----LDALNGEGKG-----EKTKLQNIMMQLRKCCNHPYLFDGAE 455 (971)
T ss_pred HHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhc----chhhcccccc-----hhhHHHHHHHHHHHhcCCccccCCCC
Confidence 99999999999999999999999999999987652 1111111111 24678999999999999999996411
Q ss_pred ccCccccchhhhhhhhccchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccCCchhhhhhhhHhhhhccCCC
Q psy13010 351 AKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSG 430 (573)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (573)
.+.
T Consensus 456 Pg~----------------------------------------------------------------------------- 458 (971)
T KOG0385|consen 456 PGP----------------------------------------------------------------------------- 458 (971)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 110
Q ss_pred CccccchhHHHHHHHHHHHHHhhcCCchhhhhhcccCcccccccccccchhhHHHHhhccccccccccccHHHHHHHHHH
Q psy13010 431 GSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKR 510 (573)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~li~~ 510 (573)
....+..++..|+|+..|..++..
T Consensus 459 --------------------------------------------------------pyttdehLv~nSGKm~vLDkLL~~ 482 (971)
T KOG0385|consen 459 --------------------------------------------------------PYTTDEHLVTNSGKMLVLDKLLPK 482 (971)
T ss_pred --------------------------------------------------------CCCcchHHHhcCcceehHHHHHHH
Confidence 012245667889999999999999
Q ss_pred HHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCC-CceEEEe
Q psy13010 511 LKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILT-HQSVGLL 572 (573)
Q Consensus 511 ~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~v~Ll 572 (573)
+.++|.||||||||+.|||+|+.++..+|+.|+|+||+++.++|..+|+.||.++ ...||||
T Consensus 483 Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlL 545 (971)
T KOG0385|consen 483 LKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLL 545 (971)
T ss_pred HHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEE
Confidence 9999999999999999999999999999999999999999999999999999887 4555554
No 2
>KOG0387|consensus
Probab=100.00 E-value=1.2e-69 Score=554.99 Aligned_cols=401 Identities=32% Similarity=0.524 Sum_probs=346.3
Q ss_pred CccCCCCchhhhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHH
Q psy13010 28 EVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQ 107 (573)
Q Consensus 28 ~~~~~~p~~l~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~ 107 (573)
...+.+|..+-..|++||.++|+||++++.++-||||+||||+|||+|+++|++.+...+...+|+|||||.+++.||.+
T Consensus 193 ~~~~~vPg~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~ 272 (923)
T KOG0387|consen 193 EGGFKVPGFIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMK 272 (923)
T ss_pred cccccccHHHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHH
Confidence 34488999999999999999999999999999999999999999999999999999998777799999999999999999
Q ss_pred HHHHHCCCceEEeecCChhHHH----HHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCc
Q psy13010 108 EMERFVPDFKVVPYWGSPQERK----ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSS 183 (573)
Q Consensus 108 el~~~~~~~~v~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~ 183 (573)
|+.+|+|.++|.+|+++..... .....+...-.........|+||||+.++..-+.+..+.|+++|+||+|+|+|+
T Consensus 273 E~~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNp 352 (923)
T KOG0387|consen 273 EFQTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNP 352 (923)
T ss_pred HHHHhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCC
Confidence 9999999999999998765210 000000000011222455799999999999999999999999999999999999
Q ss_pred chHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccc-----cHHHHHHH
Q psy13010 184 SSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI-----DERHLSRL 258 (573)
Q Consensus 184 ~s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-----~~~~~~~l 258 (573)
+|+.+.+|+.++..+|++|||||++|++.|||+++.|+.||.+++...|.+.|..|+..++.....+ +......|
T Consensus 353 ns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~L 432 (923)
T KOG0387|consen 353 NSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVAL 432 (923)
T ss_pred ccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998887765553 34567779
Q ss_pred HHhhccceeeccccchhc-cCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHHHHHHH
Q psy13010 259 HMILKPFMLRRIKKDVEN-ELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 337 (573)
Q Consensus 259 ~~~l~~~~~rr~k~~~~~-~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr 337 (573)
+.+|+||++||+|.++.. .||.+.+++++|.||+.|+.+|+++.+...+...+... ...+..+..||
T Consensus 433 r~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~------------~~~l~Gi~iLr 500 (923)
T KOG0387|consen 433 RDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGK------------RNCLSGIDILR 500 (923)
T ss_pred HHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCC------------ccceechHHHH
Confidence 999999999999999998 89999999999999999999999999987666554432 24567788899
Q ss_pred HhcCCccccccccccCccccchhhhhhhhccchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccCCchhhhh
Q psy13010 338 KVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKK 417 (573)
Q Consensus 338 ~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~~~~~~~~ 417 (573)
.+||||.++.+......
T Consensus 501 kICnHPdll~~~~~~~~--------------------------------------------------------------- 517 (923)
T KOG0387|consen 501 KICNHPDLLDRRDEDEK--------------------------------------------------------------- 517 (923)
T ss_pred hhcCCcccccCcccccc---------------------------------------------------------------
Confidence 99999999975320000
Q ss_pred hhhHhhhhccCCCCccccchhHHHHHHHHHHHHHhhcCCchhhhhhcccCcccccccccccchhhHHHHhhccccccccc
Q psy13010 418 KIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYD 497 (573)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (573)
. .++....+..
T Consensus 518 ------------------------------------------------------~---------------~~D~~g~~k~ 528 (923)
T KOG0387|consen 518 ------------------------------------------------------Q---------------GPDYEGDPKR 528 (923)
T ss_pred ------------------------------------------------------c---------------CCCcCCChhh
Confidence 0 0000123446
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHH-hCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEEe
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMV-YRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGLL 572 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~-~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~Ll 572 (573)
|+|++++..++..|.++|.|||+|||...|||+|+..|. .+|+.|+|+||.+|...|+..|++||++..+.||||
T Consensus 529 sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLL 604 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLL 604 (923)
T ss_pred cchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEE
Confidence 999999999999999999999999999999999999999 699999999999999999999999999999999998
No 3
>KOG0388|consensus
Probab=100.00 E-value=4.7e-68 Score=533.88 Aligned_cols=516 Identities=54% Similarity=0.876 Sum_probs=392.3
Q ss_pred CCCCC-CccCCCCchhhhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCccc
Q psy13010 23 PSFST-EVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAST 101 (573)
Q Consensus 23 ~~~~~-~~~~~~p~~l~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l 101 (573)
|+..+ ...+++|..|+++|+.||+.|++||.+++.+|.+||||||||+|||++++++++.+.+..+.+||+|||+|.+.
T Consensus 549 ~t~i~~t~tV~qPkil~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaSt 628 (1185)
T KOG0388|consen 549 PTNIDTTRTVPQPKILKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPAST 628 (1185)
T ss_pred CccccceeeccCchhhhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHH
Confidence 34333 67789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEccccccc
Q psy13010 102 LHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIK 181 (573)
Q Consensus 102 ~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~k 181 (573)
+++|.+||.+|+|.++++.|+|+..+++.++.+|..++......+|+|+||+|..+..+..+|.+++|.+.|+||++.||
T Consensus 629 L~NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIK 708 (1185)
T KOG0388|consen 629 LHNWAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIK 708 (1185)
T ss_pred HhHHHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccHHHHHHHHHh
Q psy13010 182 SSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMI 261 (573)
Q Consensus 182 n~~s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (573)
...|.+++.+.+++|+.|+||||||++|+..|||++++|+.|.+|.+..+|.+||.+.+..........++..+.+|+.+
T Consensus 709 SSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~I 788 (1185)
T KOG0388|consen 709 SSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAI 788 (1185)
T ss_pred hhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred hccceeeccccchhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHHHHHHHHhcC
Q psy13010 262 LKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCN 341 (573)
Q Consensus 262 l~~~~~rr~k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~c~ 341 (573)
|+|||+||.|+++..+|..+.+..|.|+||..|+.+|..+..... ......++++||++|+
T Consensus 789 LKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS-------------------~~E~~~~vmQlrKVCN 849 (1185)
T KOG0388|consen 789 LKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS-------------------SMEMENLVMQLRKVCN 849 (1185)
T ss_pred HhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh-------------------HHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999977642 2334458899999999
Q ss_pred CccccccccccCccccch-hhhhhhhc-cc--------------hhh-------ccccCCCCCCCCCCCCCcccCCCCCC
Q psy13010 342 HPELFERRDAKAPLAMSC-EDYHRLYR-GR--------------QME-------REEGTILPEFPHVPRDPVILPQQPTY 398 (573)
Q Consensus 342 hp~l~~~~~~~~~~~~~~-~~~~~~~~-~~--------------~~~-------~~~~~~~~~~~~~~~~~~~~~c~h~~ 398 (573)
||.|+++.+....+.... ........ ++ .++ +....+|+...-....+.. --|
T Consensus 850 HPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~----~w~ 925 (1185)
T KOG0388|consen 850 HPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPN----AWY 925 (1185)
T ss_pred ChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcc----hhc
Confidence 999998665443322221 11110000 00 000 1111223221111111111 000
Q ss_pred CCccc---ccccccCCchhhhhhhhHhhhhccCCCC---ccccchhHHHHHHHHHHHHHhhc------CCchhhhhhccc
Q psy13010 399 LPVCF---FESTQNMVSPALKKKIKIEDLIHSSSGG---SIQLSNNIASNLMNLVMQFRKVC------NHPELFERRDAK 466 (573)
Q Consensus 399 ~~~c~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 466 (573)
-+.-+ ......-+....++.++ +.+....+.. ...+-+.+... ......| ..|-+. ..+++
T Consensus 926 ~~l~~e~k~G~~~~~n~e~~~Kavt-r~ll~p~~~~~e~~~rvi~~e~~~-----L~~~~y~y~P~v~apPvLI-~~ead 998 (1185)
T KOG0388|consen 926 LRLSLEFKYGGYVFRNVEEAGKAVT-RNLLNPESSLLESMRRVIDEEAYR-----LQRHVYCYSPVVAAPPVLI-SNEAD 998 (1185)
T ss_pred ccceeeeccCCcccccHHHHHHHHH-HHhcCcccchhHHHHHHhhHHHHH-----hhhheeeeccccCCCCeee-ecccC
Confidence 00000 00111112222221111 1121111100 00000000000 0011111 111111 11122
Q ss_pred CcccccccccccchhhHHHHhhccccccccccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEec
Q psy13010 467 APLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLD 546 (573)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~ 546 (573)
.|.- +....+..--..+..+....++.+|+|+..|.+++..++++|.+||+|.|++.|+|+|+++|..+|+.|.|+|
T Consensus 999 ~PeI---d~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLD 1075 (1185)
T KOG0388|consen 999 LPEI---DLENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLD 1075 (1185)
T ss_pred CCCC---CccccCcccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEec
Confidence 1110 0001111111233355566678899999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhCcCCCCCceEEEe
Q psy13010 547 GSSKISERRDMFAVPGILTHQSVGLL 572 (573)
Q Consensus 547 G~~~~~~R~~~i~~F~~~~~~~v~Ll 572 (573)
|+.....|.+++..|+. +.+.||||
T Consensus 1076 GSsk~~dRrd~vrDwQ~-sdiFvFLL 1100 (1185)
T KOG0388|consen 1076 GSSKASDRRDVVRDWQA-SDIFVFLL 1100 (1185)
T ss_pred CcchhhHHHHHHhhccC-CceEEEEE
Confidence 99999999999999999 77899987
No 4
>KOG0389|consensus
Probab=100.00 E-value=1.1e-67 Score=539.72 Aligned_cols=440 Identities=36% Similarity=0.627 Sum_probs=339.0
Q ss_pred cCCCCchhhh--ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHH
Q psy13010 30 ERPQPGLFRG--NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQ 107 (573)
Q Consensus 30 ~~~~p~~l~~--~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~ 107 (573)
..++|+.+.. +|+|||+.||+||.-++..+..||||||||+|||+++|||+++++..+. .||+|||||.+.+++|.+
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~-~gpHLVVvPsSTleNWlr 465 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGN-PGPHLVVVPSSTLENWLR 465 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCC-CCCcEEEecchhHHHHHH
Confidence 4458888876 8999999999999998999999999999999999999999999999866 799999999999999999
Q ss_pred HHHHHCCCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHh---hHhhhhccCccEEEEcccccccCcc
Q psy13010 108 EMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVS---DFKYFNRIKWQYLILDEAQAIKSSS 184 (573)
Q Consensus 108 el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~---~~~~l~~~~~~~vIiDE~h~~kn~~ 184 (573)
||.+|+|.++|..|+|+..+++.++..... ...+|+|++|||..+.. +...|...+|+++|+||+|.+||..
T Consensus 466 Ef~kwCPsl~Ve~YyGSq~ER~~lR~~i~~-----~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~ 540 (941)
T KOG0389|consen 466 EFAKWCPSLKVEPYYGSQDERRELRERIKK-----NKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT 540 (941)
T ss_pred HHHHhCCceEEEeccCcHHHHHHHHHHHhc-----cCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc
Confidence 999999999999999999999888765332 22599999999998864 4568889999999999999999999
Q ss_pred hHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCCh-HHHHHHHhhhhh-hhhcccccccHHHHHHHHHhh
Q psy13010 185 SMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSH-DEFNEWFSKDIE-SHAENKTSIDERHLSRLHMIL 262 (573)
Q Consensus 185 s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~-~~f~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l 262 (573)
|.+|+.+..+.+..|+||||||++|++.||+++|.|+.|+.|.+. ..+...|..... .+..........++.+.+.++
T Consensus 541 SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im 620 (941)
T KOG0389|consen 541 SERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIM 620 (941)
T ss_pred hHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999765 446665653222 122222222335688899999
Q ss_pred ccceeeccccchhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHHHHHHHHhcCC
Q psy13010 263 KPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNH 342 (573)
Q Consensus 263 ~~~~~rr~k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~c~h 342 (573)
+||++||.|.+|...|||+..++.+|+|++.|+.+|..+.+............ ... . --..+++||++++|
T Consensus 621 ~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~n---s~~----~--~~~vlmqlRK~AnH 691 (941)
T KOG0389|consen 621 KPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKN---SEL----K--SGNVLMQLRKAANH 691 (941)
T ss_pred hHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccc---ccc----c--cchHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999988763221111111 000 1 14578899999999
Q ss_pred ccccccccccCccccchhhhhhhhccchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccCCchhhhhhhhHh
Q psy13010 343 PELFERRDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKIE 422 (573)
Q Consensus 343 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~~~~~~~~~~~~~ 422 (573)
|.|+.....+......+... +.+. .||. |- ....++
T Consensus 692 PLL~R~~Y~de~L~~mak~i--------l~e~----------------------ay~~-~n-------------~qyIfE 727 (941)
T KOG0389|consen 692 PLLFRSIYTDEKLRKMAKRI--------LNEP----------------------AYKK-AN-------------EQYIFE 727 (941)
T ss_pred hhHHHHhccHHHHHHHHHHH--------hCch----------------------hhhh-cC-------------HHHHHH
Confidence 99987543332111100000 0000 0000 00 000000
Q ss_pred hhhccCCCCccccchhHHHHHHHHHHHHHhhcC-CchhhhhhcccCcccccccccccchhhHHHHhhccccccccccccH
Q psy13010 423 DLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCN-HPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501 (573)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl 501 (573)
++ ..++- -.+.++|. .+-+ .. ..-+...+.+|+|+
T Consensus 728 Dm-----------------~~msD-felHqLc~~f~~~------------------------~~--f~L~d~~~mdSgK~ 763 (941)
T KOG0389|consen 728 DM-----------------EVMSD-FELHQLCCQFRHL------------------------SK--FQLKDDLWMDSGKC 763 (941)
T ss_pred HH-----------------HhhhH-HHHHHHHHhcCCC------------------------cc--cccCCchhhhhhhH
Confidence 00 00000 01111111 0000 00 01123346689999
Q ss_pred HHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEEe
Q psy13010 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGLL 572 (573)
Q Consensus 502 ~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~Ll 572 (573)
++|.+++..++..|+||||||||+.|||+|+..|...|+.|+|+||+|....|+.+|++|+++..+.||||
T Consensus 764 r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLL 834 (941)
T KOG0389|consen 764 RKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLL 834 (941)
T ss_pred hHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998
No 5
>KOG0391|consensus
Probab=100.00 E-value=4.1e-65 Score=533.67 Aligned_cols=319 Identities=47% Similarity=0.889 Sum_probs=290.0
Q ss_pred CCCCCCccCCCCchhhhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccH
Q psy13010 23 PSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTL 102 (573)
Q Consensus 23 ~~~~~~~~~~~p~~l~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~ 102 (573)
...-+..+.+.|..|.++|+.||+.|++||..++.++.+||||||||+|||++.|++++++.-..+.|||+|||+|.+++
T Consensus 598 tl~tTqVktpvPsLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsvi 677 (1958)
T KOG0391|consen 598 TLVTTQVKTPVPSLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVI 677 (1958)
T ss_pred eeeeeeeccCchHHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhh
Confidence 33445678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccC
Q psy13010 103 HNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKS 182 (573)
Q Consensus 103 ~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn 182 (573)
-+|.=||++|+|+++|+.|.|+.++++.-++-| .....|+|+||+|..+..+...|...+|.++|+||+|+|||
T Consensus 678 LnWEMElKRwcPglKILTYyGs~kErkeKRqgW------~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKn 751 (1958)
T KOG0391|consen 678 LNWEMELKRWCPGLKILTYYGSHKERKEKRQGW------AKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKN 751 (1958)
T ss_pred hhhhHHHhhhCCcceEeeecCCHHHHHHHhhcc------cCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcc
Confidence 999999999999999999999999888666543 55578999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccHHHHHHHHHhh
Q psy13010 183 SSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMIL 262 (573)
Q Consensus 183 ~~s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (573)
..|++|+++..+.+.+|+||||||++|++.|||+++.||.|..|.+.+.|..||..|..+--......+..-..+|++++
T Consensus 752 fksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVl 831 (1958)
T KOG0391|consen 752 FKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVL 831 (1958)
T ss_pred hhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999887766555555778899999999
Q ss_pred ccceeeccccchhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHHHHHHHHhcCC
Q psy13010 263 KPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNH 342 (573)
Q Consensus 263 ~~~~~rr~k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~c~h 342 (573)
++|++||+|.|+.+.||.+-+++|.|.||..|+.+|+.+..+.. ....+..+.+.++++.+++||++|||
T Consensus 832 rPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~----------TKetLkSGhfmsVlnilmqLrKvCNH 901 (1958)
T KOG0391|consen 832 RPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPG----------TKETLKSGHFMSVLNILMQLRKVCNH 901 (1958)
T ss_pred HHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccc----------hhhHhhcCchhHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999876543 22233455688999999999999999
Q ss_pred ccccccccccCcccc
Q psy13010 343 PELFERRDAKAPLAM 357 (573)
Q Consensus 343 p~l~~~~~~~~~~~~ 357 (573)
|.|++.+...+++..
T Consensus 902 PnLfEpRpv~ssfV~ 916 (1958)
T KOG0391|consen 902 PNLFEPRPVGSSFVA 916 (1958)
T ss_pred CCcCCCCCCCccccc
Confidence 999987766655443
No 6
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=4.4e-64 Score=553.67 Aligned_cols=384 Identities=40% Similarity=0.742 Sum_probs=330.9
Q ss_pred CCCchhhhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHH
Q psy13010 32 PQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMER 111 (573)
Q Consensus 32 ~~p~~l~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~ 111 (573)
.+|..++.+|+|||++|++||+.++..+.+||||||||+|||+++++++..+....+..+|+|||||.+++.+|.+||.+
T Consensus 161 ~qP~~i~~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei~k 240 (1033)
T PLN03142 161 VQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRR 240 (1033)
T ss_pred cCChHhccchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999988766777899999999999999999999
Q ss_pred HCCCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHH
Q psy13010 112 FVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLL 191 (573)
Q Consensus 112 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~ 191 (573)
|+|.+++++|+|+...+....... ...+.++|+||||+++.++...|..+.|++||+||+|++||..|.+++++
T Consensus 241 w~p~l~v~~~~G~~~eR~~~~~~~------~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskal 314 (1033)
T PLN03142 241 FCPVLRAVKFHGNPEERAHQREEL------LVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTM 314 (1033)
T ss_pred HCCCCceEEEeCCHHHHHHHHHHH------hcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHH
Confidence 999999999999988766554321 12256899999999999999999999999999999999999999999999
Q ss_pred HhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccHHHHHHHHHhhccceeeccc
Q psy13010 192 LGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIK 271 (573)
Q Consensus 192 ~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~k 271 (573)
+.+++.+||+|||||++|++.|||++++||.|+.+++...|..+|..... .........|+.+++++++||+|
T Consensus 315 r~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~-------~~~~e~i~~L~~~L~pf~LRR~K 387 (1033)
T PLN03142 315 RLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGE-------NDQQEVVQQLHKVLRPFLLRRLK 387 (1033)
T ss_pred HHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccc-------cchHHHHHHHHHHhhHHHhhhhH
Confidence 99999999999999999999999999999999999999999999975321 11345678899999999999999
Q ss_pred cchhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHHHHHHHHhcCCccccccccc
Q psy13010 272 KDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDA 351 (573)
Q Consensus 272 ~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~c~hp~l~~~~~~ 351 (573)
.++...|||+.+..+.|.||+.|++.|..+....... +. .++ ....++..+++||++|+||+++.....
T Consensus 388 sdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~--l~--~g~-------~~~~LlnilmqLRk~cnHP~L~~~~ep 456 (1033)
T PLN03142 388 SDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDV--VN--AGG-------ERKRLLNIAMQLRKCCNHPYLFQGAEP 456 (1033)
T ss_pred HHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHH--Hh--ccc-------cHHHHHHHHHHHHHHhCCHHhhhcccc
Confidence 9999999999999999999999999999998764211 11 111 134678889999999999999752110
Q ss_pred cCccccchhhhhhhhccchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccCCchhhhhhhhHhhhhccCCCC
Q psy13010 352 KAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGG 431 (573)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (573)
...
T Consensus 457 ~~~----------------------------------------------------------------------------- 459 (1033)
T PLN03142 457 GPP----------------------------------------------------------------------------- 459 (1033)
T ss_pred cCc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred ccccchhHHHHHHHHHHHHHhhcCCchhhhhhcccCcccccccccccchhhHHHHhhccccccccccccHHHHHHHHHHH
Q psy13010 432 SIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511 (573)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~li~~~ 511 (573)
......++..|+|+.+|..++..+
T Consensus 460 --------------------------------------------------------~~~~e~lie~SgKl~lLdkLL~~L 483 (1033)
T PLN03142 460 --------------------------------------------------------YTTGEHLVENSGKMVLLDKLLPKL 483 (1033)
T ss_pred --------------------------------------------------------ccchhHHhhhhhHHHHHHHHHHHH
Confidence 000112344689999999999999
Q ss_pred HhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCC-ceEEEe
Q psy13010 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTH-QSVGLL 572 (573)
Q Consensus 512 ~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~-~~v~Ll 572 (573)
...|.||||||||+.|+++|+++|...|+.|++|+|+++.++|++++++|++++. ..||||
T Consensus 484 k~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLL 545 (1033)
T PLN03142 484 KERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLL 545 (1033)
T ss_pred HhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEE
Confidence 8899999999999999999999999999999999999999999999999997654 456664
No 7
>KOG0384|consensus
Probab=100.00 E-value=7.1e-65 Score=540.32 Aligned_cols=395 Identities=41% Similarity=0.695 Sum_probs=343.1
Q ss_pred CCCchhhh-ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHH
Q psy13010 32 PQPGLFRG-NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEME 110 (573)
Q Consensus 32 ~~p~~l~~-~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~ 110 (573)
++|..+++ +|++||++|++||...+.++.+||||||||+|||++.++++.++...+...||+|||+|.+.+..|.+||.
T Consensus 361 ~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~ 440 (1373)
T KOG0384|consen 361 KQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFE 440 (1373)
T ss_pred cCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHH
Confidence 45555555 89999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHCCCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHH
Q psy13010 111 RFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKL 190 (573)
Q Consensus 111 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~ 190 (573)
.|. +.++++|.|+..++..++++............|+++||||+.+-++...|..++|.++++||+|++||..|..+..
T Consensus 441 ~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~ 519 (1373)
T KOG0384|consen 441 TWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYES 519 (1373)
T ss_pred HHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHH
Confidence 999 9999999999999999999877666545556899999999999999999999999999999999999999999999
Q ss_pred HHhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccHHHHHHHHHhhccceeecc
Q psy13010 191 LLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRI 270 (573)
Q Consensus 191 ~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~ 270 (573)
+..++..+|+|+||||++|++.|||++++||.|+.|.++..|...|... .+..+..|+..|+|+++||.
T Consensus 520 l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~-----------~e~~~~~L~~~L~P~~lRr~ 588 (1373)
T KOG0384|consen 520 LNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEE-----------TEEQVRKLQQILKPFLLRRL 588 (1373)
T ss_pred HHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcch-----------hHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999988322 55678899999999999999
Q ss_pred ccchhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHHHHHHHHhcCCcccccccc
Q psy13010 271 KKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRD 350 (573)
Q Consensus 271 k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~c~hp~l~~~~~ 350 (573)
++|+...||++.+.++.|+||+.|++.|+.++.+- .-+...+.... ...+++.++.|++|||||+|+...+
T Consensus 589 kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN----~~~LtKG~~g~-----~~~lLNimmELkKccNHpyLi~gae 659 (1373)
T KOG0384|consen 589 KKDVEKSLPPKEETILRVELSDLQKQYYKAILTKN----FSALTKGAKGS-----TPSLLNIMMELKKCCNHPYLIKGAE 659 (1373)
T ss_pred HhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhh----HHHHhccCCCC-----CchHHHHHHHHHHhcCCccccCcHH
Confidence 99999999999999999999999999999998763 22222222211 2578999999999999999996422
Q ss_pred ccCccccchhhhhhhhccchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccCCchhhhhhhhHhhhhccCCC
Q psy13010 351 AKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSG 430 (573)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (573)
....
T Consensus 660 e~~~---------------------------------------------------------------------------- 663 (1373)
T KOG0384|consen 660 EKIL---------------------------------------------------------------------------- 663 (1373)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1100
Q ss_pred CccccchhHHHHHHHHHHHHHhhcCCchhhhhhcccCcccccccccccchhhHHHHhhccccccccccccHHHHHHHHHH
Q psy13010 431 GSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKR 510 (573)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~li~~ 510 (573)
..++. .. .-..-.++|..|||+..|..|+-.
T Consensus 664 -----------------~~~~~-~~-------------------------------~d~~L~~lI~sSGKlVLLDKLL~r 694 (1373)
T KOG0384|consen 664 -----------------GDFRD-KM-------------------------------RDEALQALIQSSGKLVLLDKLLPR 694 (1373)
T ss_pred -----------------Hhhhh-cc-------------------------------hHHHHHHHHHhcCcEEeHHHHHHH
Confidence 00000 00 001123457789999999999999
Q ss_pred HHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCc-eEEEe
Q psy13010 511 LKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQ-SVGLL 572 (573)
Q Consensus 511 ~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~-~v~Ll 572 (573)
++..|.|||||||++.|||+|+++|..++++|-||||+++.+.|+++|+.||.++.- .||||
T Consensus 695 Lk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLL 757 (1373)
T KOG0384|consen 695 LKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLL 757 (1373)
T ss_pred HhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEE
Confidence 999999999999999999999999999999999999999999999999999966544 45554
No 8
>KOG0392|consensus
Probab=100.00 E-value=1.9e-63 Score=526.83 Aligned_cols=428 Identities=34% Similarity=0.546 Sum_probs=356.7
Q ss_pred HHHHHHhhccCCCCCCCCCccCCCCchhhhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcC-
Q psy13010 10 VEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYD- 88 (573)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~- 88 (573)
..++|-+.|..+.-...+.+++.+|--++..||.||.+||+|+--+.....-|||||+||+|||+|++.+++.-.....
T Consensus 945 ~~ke~erkFLeqlldpski~~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s 1024 (1549)
T KOG0392|consen 945 ASKEEERKFLEQLLDPSKIPEYKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRS 1024 (1549)
T ss_pred HhHHHHHHHHHHhcCcccCCccccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcc
Confidence 3456777777777777888888899999999999999999999887788899999999999999999988875544320
Q ss_pred -----CCCCEEEEcCcccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh
Q psy13010 89 -----VWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY 163 (573)
Q Consensus 89 -----~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~ 163 (573)
..-|.|||||+++...|..|+.+|+|-++|+.|.|.+..+..++. .....+|+||+|+.++++.+.
T Consensus 1025 ~~~e~~~~PSLIVCPsTLtGHW~~E~~kf~pfL~v~~yvg~p~~r~~lR~---------q~~~~~iiVtSYDv~RnD~d~ 1095 (1549)
T KOG0392|consen 1025 ESSEFNRLPSLIVCPSTLTGHWKSEVKKFFPFLKVLQYVGPPAERRELRD---------QYKNANIIVTSYDVVRNDVDY 1095 (1549)
T ss_pred cchhhccCCeEEECCchhhhHHHHHHHHhcchhhhhhhcCChHHHHHHHh---------hccccceEEeeHHHHHHHHHH
Confidence 124899999999999999999999999999999999999887774 335668999999999999999
Q ss_pred hhccCccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhh
Q psy13010 164 FNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESH 243 (573)
Q Consensus 164 l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~ 243 (573)
|.++.|.++|+||+|-+||..++.+++++.+++.+|++|||||++|++.|||++++||.||++|+...|..+|++|+...
T Consensus 1096 l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~as 1175 (1549)
T KOG0392|consen 1096 LIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILAS 1175 (1549)
T ss_pred HHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcccccccH-----HHHHHHHHhhccceeeccccchhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy13010 244 AENKTSIDE-----RHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGS 318 (573)
Q Consensus 244 ~~~~~~~~~-----~~~~~l~~~l~~~~~rr~k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~ 318 (573)
+..+....+ .++..|++.+=||++||.|+|+..+|||+..+..+|+|||.|+++|+.+.++.+.. ......+.
T Consensus 1176 Rd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~--~~~~~d~~ 1253 (1549)
T KOG0392|consen 1176 RDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQC--VSSQIDGG 1253 (1549)
T ss_pred cCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccc--cccccccc
Confidence 887766433 45788999999999999999999999999999999999999999999999884321 11111111
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCccccccccccCccccchhhhhhhhccchhhccccCCCCCCCCCCCCCcccCCCCCC
Q psy13010 319 IQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTY 398 (573)
Q Consensus 319 ~~~~~~~~~~~~~~l~~lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~ 398 (573)
.....+...++|+.++.+|+.|+||.++...-
T Consensus 1254 ~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~------------------------------------------------ 1285 (1549)
T KOG0392|consen 1254 EESLGTDKTHVFQALQYLRKLCNHPALVLTPV------------------------------------------------ 1285 (1549)
T ss_pred hhccCcchHHHHHHHHHHHHhcCCcceeeCCC------------------------------------------------
Confidence 11111127899999999999999999986320
Q ss_pred CCcccccccccCCchhhhhhhhHhhhhccCCCCccccchhHHHHHHHHHHHHHhhcCCchhhhhhcccCccccccccccc
Q psy13010 399 LPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVI 478 (573)
Q Consensus 399 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (573)
||.++.-..
T Consensus 1286 ---------------------------------------------------------hp~la~i~~-------------- 1294 (1549)
T KOG0392|consen 1286 ---------------------------------------------------------HPDLAAIVS-------------- 1294 (1549)
T ss_pred ---------------------------------------------------------cchHHHHHH--------------
Confidence 000000000
Q ss_pred chhhHHHHhhccccccccccccHHHHHHHHHHHHh--------------CCCeEEEEecchhHHHHHHHHHHhC---CCe
Q psy13010 479 PKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRLKA--------------SGHRVLVYSQMTKMIDLLEEFMVYR---KYR 541 (573)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~s~Kl~~l~~li~~~~~--------------~~~KvlIFsq~~~~l~~l~~~L~~~---gi~ 541 (573)
.-......-.-+..|+|+.+|.+++.++-- .+.|+||||||.+|+|+++.-|-+. .+.
T Consensus 1295 -----~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVt 1369 (1549)
T KOG0392|consen 1295 -----HLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVT 1369 (1549)
T ss_pred -----HHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCcee
Confidence 000000011114468899999999998742 2579999999999999999999764 788
Q ss_pred EEEecCCCCHHHHHHHHhCcCCCCCceEEEe
Q psy13010 542 FMRLDGSSKISERRDMFAVPGILTHQSVGLL 572 (573)
Q Consensus 542 ~~~i~G~~~~~~R~~~i~~F~~~~~~~v~Ll 572 (573)
|.|+||++++..|++++.+||+||++.|+||
T Consensus 1370 ymRLDGSVpp~~R~kiV~~FN~DptIDvLlL 1400 (1549)
T KOG0392|consen 1370 YMRLDGSVPPGDRQKIVERFNEDPTIDVLLL 1400 (1549)
T ss_pred EEEecCCCCcHHHHHHHHHhcCCCceeEEEE
Confidence 9999999999999999999999999999997
No 9
>KOG1002|consensus
Probab=100.00 E-value=8e-64 Score=486.29 Aligned_cols=462 Identities=25% Similarity=0.353 Sum_probs=366.0
Q ss_pred CccCCCCchhhhccHHHHHHHHHHHHHHHh-CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHH
Q psy13010 28 EVERPQPGLFRGNLKHYQLKGMNWLANLYD-QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQ 106 (573)
Q Consensus 28 ~~~~~~p~~l~~~L~~~Q~~~v~~l~~~~~-~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~ 106 (573)
....+||..+...|.|||++++.|+..+.. .-.|||||||||+|||+++|+++..-.. ..|+|||||.-.+.||+
T Consensus 172 ~e~aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~----ra~tLVvaP~VAlmQW~ 247 (791)
T KOG1002|consen 172 AERAEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD----RAPTLVVAPTVALMQWK 247 (791)
T ss_pred hhcccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc----cCCeeEEccHHHHHHHH
Confidence 345789999999999999999999988876 5667899999999999999998877332 25899999999999999
Q ss_pred HHHHHHCC-CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH-----------------hhhhccC
Q psy13010 107 QEMERFVP-DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF-----------------KYFNRIK 168 (573)
Q Consensus 107 ~el~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~-----------------~~l~~~~ 168 (573)
+||.+++. ..++++|+|.+..+.. .....||+|+|||..+.+.. +.|.+++
T Consensus 248 nEI~~~T~gslkv~~YhG~~R~~ni-----------kel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~ 316 (791)
T KOG1002|consen 248 NEIERHTSGSLKVYIYHGAKRDKNI-----------KELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIK 316 (791)
T ss_pred HHHHHhccCceEEEEEecccccCCH-----------HHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhce
Confidence 99999874 4899999998765432 22378999999999997643 4577789
Q ss_pred ccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCC--------------------
Q psy13010 169 WQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDS-------------------- 228 (573)
Q Consensus 169 ~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~-------------------- 228 (573)
|.+||+||+|.||+..|.+.+++..|++.+||+|||||++|+..|||++++||...+|.-
T Consensus 317 ~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~ 396 (791)
T KOG1002|consen 317 FYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMH 396 (791)
T ss_pred eeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeeccccc
Confidence 999999999999999999999999999999999999999999999999999997776531
Q ss_pred -----------hHHHHHHHhhhhhhhhcccccccHHHHHHHHHhhccceeeccccchhc--cCCCceEEEEEcCCCHHHH
Q psy13010 229 -----------HDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVEN--ELSDKIEIMVYCPLTSRQK 295 (573)
Q Consensus 229 -----------~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~k~~~~~--~LP~~~~~~v~v~ls~~q~ 295 (573)
...|++...+|++..+.. .++.......+.+++.+|+|||+-.-.+ .|||+......--++.++.
T Consensus 397 c~~c~h~~m~h~~~~n~~mlk~IqkfG~e--GpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~ 474 (791)
T KOG1002|consen 397 CDHCSHNIMQHTCFFNHFMLKPIQKFGVE--GPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEK 474 (791)
T ss_pred CCcccchhhhhhhhhcccccccchhhccc--CchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHH
Confidence 122333334566554332 2245666788999999999999877554 3899988777778999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHHHHHHHHhcCCccccccccccCccccchhhhhhhhccchhh--c
Q psy13010 296 LLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQME--R 373 (573)
Q Consensus 296 ~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 373 (573)
+.|+.+....+....-....+.. -+++..+|.+++++||+++||+|+.... ...+. .
T Consensus 475 D~YeSLY~dSkrkfntyieeGvv----lNNYAnIF~LitRmRQ~aDHP~LVl~S~-----------------~~n~~~en 533 (791)
T KOG1002|consen 475 DLYESLYKDSKRKFNTYIEEGVV----LNNYANIFTLITRMRQAADHPDLVLYSA-----------------NANLPDEN 533 (791)
T ss_pred HHHHHHHHhhHHhhhhHHhhhhh----hhhHHHHHHHHHHHHHhccCcceeeehh-----------------hcCCCccc
Confidence 99999988776544443333333 3457899999999999999999986421 11122 2
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCCcccc------cccccCCchhhhhhhhHhhhhccCCCCccccchhHHHHHHHHH
Q psy13010 374 EEGTILPEFPHVPRDPVILPQQPTYLPVCFF------ESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLV 447 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (573)
-.+.+|+.|.+..+++..+.|-|.||.-|+. .......||.|-...+++.-.++-+...
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~--------------- 598 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTD--------------- 598 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcc---------------
Confidence 3457899999999999999999999999973 2233467777765555543322222111
Q ss_pred HHHHhhcCCchhhhhhcccCcccccccccccchhhHHHHhhccccccccccccHHHHHHHHHHHHhCC--CeEEEEecch
Q psy13010 448 MQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRLKASG--HRVLVYSQMT 525 (573)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~li~~~~~~~--~KvlIFsq~~ 525 (573)
..+...+.+.-+.+..-+..|+|+++|.+.|.-+++++ -|.||||||+
T Consensus 599 ------------------------------l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFT 648 (791)
T KOG1002|consen 599 ------------------------------LKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFT 648 (791)
T ss_pred ------------------------------hhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHH
Confidence 11122223334444455678999999999999888764 5999999999
Q ss_pred hHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEEe
Q psy13010 526 KMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGLL 572 (573)
Q Consensus 526 ~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~Ll 572 (573)
+|||+|+..|.+.|+.++.+.|+|++..|.+.|+.|.++++++|||+
T Consensus 649 SmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLv 695 (791)
T KOG1002|consen 649 SMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLV 695 (791)
T ss_pred HHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999996
No 10
>KOG0386|consensus
Probab=100.00 E-value=6.3e-59 Score=486.18 Aligned_cols=402 Identities=39% Similarity=0.738 Sum_probs=345.3
Q ss_pred CCCCCccCCCCchhhh-ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccH
Q psy13010 24 SFSTEVERPQPGLFRG-NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTL 102 (573)
Q Consensus 24 ~~~~~~~~~~p~~l~~-~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~ 102 (573)
..-.+...+||..+.+ .|++||+.|++||..++.++.+||+|||||+|||+++|+++.++++..+..||+|||+|.+.+
T Consensus 377 H~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL 456 (1157)
T KOG0386|consen 377 HPIKENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTL 456 (1157)
T ss_pred chhhhccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEecccccc
Confidence 3445667789988876 899999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHHHHCCCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccC
Q psy13010 103 HNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKS 182 (573)
Q Consensus 103 ~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn 182 (573)
.+|..||.+|.|++..+.|.|++..+..+..- -..+.|.|++|+|+.+.++...|.++.|.++||||+|++||
T Consensus 457 ~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~q-------ir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKN 529 (1157)
T KOG0386|consen 457 VNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQ-------QRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKN 529 (1157)
T ss_pred CCchhhccccccceeeeeeeCCHHHHhhHHHH-------HhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccc
Confidence 99999999999999999999999988877653 12289999999999999999999999999999999999999
Q ss_pred cchHHHHHHH-hcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccH---HHHHHH
Q psy13010 183 SSSMRWKLLL-GFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDE---RHLSRL 258 (573)
Q Consensus 183 ~~s~~~~~~~-~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~---~~~~~l 258 (573)
..++...-+. ...+.+|+||||||++|++.|||++|+||.|..|.+...|.+||..|...-+.......+ --+.+|
T Consensus 530 a~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRL 609 (1157)
T KOG0386|consen 530 AICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRL 609 (1157)
T ss_pred hhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHH
Confidence 9988888777 558999999999999999999999999999999999999999999999887633222222 347789
Q ss_pred HHhhccceeeccccchhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHHHHHHHH
Q psy13010 259 HMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRK 338 (573)
Q Consensus 259 ~~~l~~~~~rr~k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~ 338 (573)
+++|+||++||.|.++..+||++++.++.|.||..|+..|..+.+.-. .. ... ......+..+++.++.||+
T Consensus 610 HkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~---l~--~d~---~~g~~g~k~L~N~imqLRK 681 (1157)
T KOG0386|consen 610 HKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQ---LL--KDT---AKGKKGYKPLFNTIMQLRK 681 (1157)
T ss_pred HHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCC---CC--cCc---hhccccchhhhhHhHHHHH
Confidence 999999999999999999999999999999999999999999875421 11 000 1123346689999999999
Q ss_pred hcCCccccccccccCccccchhhhhhhhccchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccCCchhhhhh
Q psy13010 339 VCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKK 418 (573)
Q Consensus 339 ~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~~~~~~~~~ 418 (573)
+||||+++..-+.... .+.
T Consensus 682 iCNHP~lf~~ve~~~~--------------------------~~~----------------------------------- 700 (1157)
T KOG0386|consen 682 LCNHPYLFANVENSYT--------------------------LHY----------------------------------- 700 (1157)
T ss_pred hcCCchhhhhhccccc--------------------------ccc-----------------------------------
Confidence 9999999853111100 000
Q ss_pred hhHhhhhccCCCCccccchhHHHHHHHHHHHHHhhcCCchhhhhhcccCcccccccccccchhhHHHHhhcccccccccc
Q psy13010 419 IKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDA 498 (573)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 498 (573)
....++..|
T Consensus 701 -----------------------------------------------------------------------~~~dL~R~s 709 (1157)
T KOG0386|consen 701 -----------------------------------------------------------------------DIKDLVRVS 709 (1157)
T ss_pred -----------------------------------------------------------------------ChhHHHHhc
Confidence 002245579
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCC-CceEEEe
Q psy13010 499 GKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILT-HQSVGLL 572 (573)
Q Consensus 499 ~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~v~Ll 572 (573)
||++.|..++-.+.+.|.+||.|+|.+..+++++.+|...++.|.|+||.++.++|.+.++.||..+ .+.+|||
T Consensus 710 GKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fll 784 (1157)
T KOG0386|consen 710 GKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLL 784 (1157)
T ss_pred cHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999654 4555554
No 11
>KOG1015|consensus
Probab=100.00 E-value=6.2e-55 Score=450.37 Aligned_cols=505 Identities=21% Similarity=0.263 Sum_probs=354.3
Q ss_pred CCccCCCCchhhhccHHHHHHHHHHHHHHH---------hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhc-CCCCCEEEE
Q psy13010 27 TEVERPQPGLFRGNLKHYQLKGMNWLANLY---------DQGINGILADEMGLGKTVQSIAFLCHIAETY-DVWGPFLII 96 (573)
Q Consensus 27 ~~~~~~~p~~l~~~L~~~Q~~~v~~l~~~~---------~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~-~~~~~~LIV 96 (573)
.++.+..|..+...|+|||..||+|||++. ..|.||||||.||+|||+++++|+..++.-. -..+++|||
T Consensus 655 ~e~~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV 734 (1567)
T KOG1015|consen 655 KEPLVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVV 734 (1567)
T ss_pred ccchhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEE
Confidence 345566777788899999999999999765 4677999999999999999999999766432 345789999
Q ss_pred cCcccHHHHHHHHHHHCCC------ceEEeecC--ChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH-------
Q psy13010 97 SPASTLHNWQQEMERFVPD------FKVVPYWG--SPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF------- 161 (573)
Q Consensus 97 ~P~~l~~qW~~el~~~~~~------~~v~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~------- 161 (573)
||.+++.+|.+||.+|.++ +.|..+.. .+..+..+.+.|. ....|+|+.|+.++...
T Consensus 735 ~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~--------~~ggVmIiGYdmyRnLa~gr~vk~ 806 (1567)
T KOG1015|consen 735 CPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQ--------EDGGVMIIGYDMYRNLAQGRNVKS 806 (1567)
T ss_pred cchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHH--------hcCCEEEEehHHHHHHhcccchhh
Confidence 9999999999999999985 33333322 2344555555443 33379999999997532
Q ss_pred --------hhhhccCccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHH
Q psy13010 162 --------KYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFN 233 (573)
Q Consensus 162 --------~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~ 233 (573)
..+..-++|+||+||+|-+||..|.+++++..+++++||+|||||++|++.|+|+|++|+.|+++++..+|+
T Consensus 807 rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~Efr 886 (1567)
T KOG1015|consen 807 RKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFR 886 (1567)
T ss_pred hHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHH
Confidence 234445899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhccccccc-----HHHHHHHHHhhccceeeccccchhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHH
Q psy13010 234 EWFSKDIESHAENKTSID-----ERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIE 308 (573)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~l~~~~~rr~k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~ 308 (573)
++|.+|+.+++...+... ....+.|+..|+.++.|+....+...|||+++++|.|.||+.|..+|..+++..
T Consensus 887 NRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~--- 963 (1567)
T KOG1015|consen 887 NRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHL--- 963 (1567)
T ss_pred HhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhc---
Confidence 999999999987766543 256788999999999999999999999999999999999999999999998732
Q ss_pred HhhhhcCCCccccchhhHHHHHHHHHHHHHhcCCccccccccccCccccchhhhhhhhccchhhccccCCCCCCCCCCCC
Q psy13010 309 DLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRD 388 (573)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (573)
...++......+-...+|...+-|++|.+||..+.-... ...+.+...+.+ ..-++|.+..+.
T Consensus 964 ----~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~------------~~enkR~~sedd-m~~fi~D~sde~ 1026 (1567)
T KOG1015|consen 964 ----TGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSI------------SKENKRYFSEDD-MDEFIADDSDET 1026 (1567)
T ss_pred ----cccCCccccccchhhhHHHHHHHHHHHhcCCCceeechh------------hhhhcccccccc-hhccccCCCccc
Confidence 222222222233456789999999999999988752111 111122222222 222222222111
Q ss_pred CcccCCCCCCCCcc--cccccccCCchhhhhhhhHhhhhccCCCCccccchhHHHHHHHHHHH-HHhhcCCchhhhhhcc
Q psy13010 389 PVILPQQPTYLPVC--FFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQ-FRKVCNHPELFERRDA 465 (573)
Q Consensus 389 ~~~~~c~h~~~~~c--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 465 (573)
-...+ ..-||..- +..+..+.++. ...++++-..-.......++.... .....+++...=....
T Consensus 1027 e~s~~-s~d~~~~~ks~~~s~~Desss------------~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~ 1093 (1567)
T KOG1015|consen 1027 EMSLS-SDDYTKKKKSGKKSKKDESSS------------GSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLE 1093 (1567)
T ss_pred ccccc-ccchhhccccccccccccccc------------ccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhh
Confidence 11111 11111110 00000000000 000000000000000000000000 0001111111000000
Q ss_pred cCcccccccccccchhhHHHHhhccccccccccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHh--------
Q psy13010 466 KAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVY-------- 537 (573)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~-------- 537 (573)
+ -......+.+.|..||.......+.....-|+|+-.|+++|+..-.-|+|+|||||...+||+|+.+|..
T Consensus 1094 d-lag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~ 1172 (1567)
T KOG1015|consen 1094 D-LAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKED 1172 (1567)
T ss_pred c-ccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccc
Confidence 0 0111224556677888888888888888999999999999999877899999999999999999999974
Q ss_pred --------------CCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEEeC
Q psy13010 538 --------------RKYRFMRLDGSSKISERRDMFAVPGILTHQSVGLLV 573 (573)
Q Consensus 538 --------------~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~Ll~ 573 (573)
.|.+|.||||++...+|+++.++||+..+.++=|+|
T Consensus 1173 ~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~L 1222 (1567)
T KOG1015|consen 1173 KDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFL 1222 (1567)
T ss_pred cccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEE
Confidence 588999999999999999999999999998876653
No 12
>KOG0390|consensus
Probab=100.00 E-value=4.5e-53 Score=445.59 Aligned_cols=406 Identities=27% Similarity=0.410 Sum_probs=322.8
Q ss_pred CCCCchhhhccHHHHHHHHHHHHHHHh------CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCC-----CCCEEEEcCc
Q psy13010 31 RPQPGLFRGNLKHYQLKGMNWLANLYD------QGINGILADEMGLGKTVQSIAFLCHIAETYDV-----WGPFLIISPA 99 (573)
Q Consensus 31 ~~~p~~l~~~L~~~Q~~~v~~l~~~~~------~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~-----~~~~LIV~P~ 99 (573)
+-.-|.+...|+|||.+|+.||++++. ..+|||+||+||+|||++.|+++..+...++. ++| |||||+
T Consensus 229 v~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~-lVV~P~ 307 (776)
T KOG0390|consen 229 VVIDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKP-LVVAPS 307 (776)
T ss_pred EEecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCcccccccc-EEEccH
Confidence 334456778999999999999999884 44688999999999999999999999999877 544 999999
Q ss_pred ccHHHHHHHHHHHCC--CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEccc
Q psy13010 100 STLHNWQQEMERFVP--DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 177 (573)
Q Consensus 100 ~l~~qW~~el~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~ 177 (573)
+++.+|++||.+|.. ....+.+.|..++ .+.............-..-|.+++|++++...+.+....++++|+||+
T Consensus 308 sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~--~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEG 385 (776)
T KOG0390|consen 308 SLVNNWKKEFGKWLGNHRINPLDFYSTKKS--SWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEG 385 (776)
T ss_pred HHHHHHHHHHHHhccccccceeeeecccch--hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCC
Confidence 999999999999986 3556666666554 111111112222333566799999999999999999999999999999
Q ss_pred ccccCcchHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccH----H
Q psy13010 178 QAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDE----R 253 (573)
Q Consensus 178 h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~----~ 253 (573)
|+.||..|.+++++.++++.+|++|||||++|++.|+|++++|+.|+.+++...|.+.|..++..++........ .
T Consensus 386 HrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~ 465 (776)
T KOG0390|consen 386 HRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREE 465 (776)
T ss_pred CCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887665544333 3
Q ss_pred HHHHHHHhhccceeeccccchhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHHH
Q psy13010 254 HLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLV 333 (573)
Q Consensus 254 ~~~~l~~~l~~~~~rr~k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 333 (573)
.+.+|..+...|++||+-....+.||++.+++|.|.+|+.|..+|..+.+.. ..... ....+..+
T Consensus 466 rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~~~--------------~~~~l~~~ 530 (776)
T KOG0390|consen 466 RLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMRTL--------------KGYALELI 530 (776)
T ss_pred HHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhhhh--------------hcchhhHH
Confidence 3888999999999999998999999999999999999999999999998764 22111 12367788
Q ss_pred HHHHHhcCCccccccccccCccccchhhhhhhhccchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccCCch
Q psy13010 334 MQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSP 413 (573)
Q Consensus 334 ~~lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~~~~ 413 (573)
..|.++|+||.|+........ .....
T Consensus 531 ~~L~k~cnhP~L~~~~~~~~~---------------------------------------------------e~~~~--- 556 (776)
T KOG0390|consen 531 TKLKKLCNHPSLLLLCEKTEK---------------------------------------------------EKAFK--- 556 (776)
T ss_pred HHHHHHhcCHHhhcccccccc---------------------------------------------------ccccc---
Confidence 889999999999841110000 00000
Q ss_pred hhhhhhhHhhhhccCCCCccccchhHHHHHHHHHHHHHhhcCCchhhhhhcccCcccccccccccchhhHHHHhhccccc
Q psy13010 414 ALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLT 493 (573)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (573)
+| ..............
T Consensus 557 ------------------------------------------~~----------------------~~~~~~~~~~~~~~ 572 (776)
T KOG0390|consen 557 ------------------------------------------NP----------------------ALLLDPGKLKLDAG 572 (776)
T ss_pred ------------------------------------------Ch----------------------Hhhhcccccccccc
Confidence 00 00000000011111
Q ss_pred cccccccHHHHHHHHHHHHhC-CCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCc-eEEE
Q psy13010 494 LVYDAGKLSVLDDLLKRLKAS-GHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQ-SVGL 571 (573)
Q Consensus 494 ~~~~s~Kl~~l~~li~~~~~~-~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~-~v~L 571 (573)
....|+|+..|+.++...... ..|+++.++|+.|+++++..++.+|..++|+||+|+.++|+.+|++||+.+.. .|||
T Consensus 573 ~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfL 652 (776)
T KOG0390|consen 573 DGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFL 652 (776)
T ss_pred cchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEE
Confidence 223478999999888665554 67999999999999999999999999999999999999999999999988777 7777
Q ss_pred e
Q psy13010 572 L 572 (573)
Q Consensus 572 l 572 (573)
+
T Consensus 653 l 653 (776)
T KOG0390|consen 653 L 653 (776)
T ss_pred E
Confidence 5
No 13
>KOG4439|consensus
Probab=100.00 E-value=7e-54 Score=432.99 Aligned_cols=452 Identities=23% Similarity=0.348 Sum_probs=331.6
Q ss_pred HHHHHHHHHhhccCCCCCCC-CCccCCCCchhhhccHHHHHHHHHHHHHHHh-CCCCeEEeCCCCCCHHHHHHHHHHHHh
Q psy13010 7 AVEVEKQRSQQFGSTTPSFS-TEVERPQPGLFRGNLKHYQLKGMNWLANLYD-QGINGILADEMGLGKTVQSIAFLCHIA 84 (573)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~l~~~L~~~Q~~~v~~l~~~~~-~~~~~ll~de~G~GKT~~~ia~~~~~~ 84 (573)
..+...+-..+++....++. .....+-|.+++..|.|||++|+.||..... .+.||||+|+||+|||+++|++|..-.
T Consensus 291 v~~~~~r~~~ql~~~~e~~P~et~lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK 370 (901)
T KOG4439|consen 291 VNKIFDRLTQQLADATETIPGETDLTETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQK 370 (901)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcccccCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHH
Confidence 33344444555555555555 3445678999999999999999999976664 577889999999999999999998654
Q ss_pred hhc-------CCCCCEEEEcCcccHHHHHHHHHHHCC--CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehH
Q psy13010 85 ETY-------DVWGPFLIISPASTLHNWQQEMERFVP--DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQ 155 (573)
Q Consensus 85 ~~~-------~~~~~~LIV~P~~l~~qW~~el~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~ 155 (573)
... ....++|||||.++++||..|+.+-.. -++|++|+|.....-.. .....||||||||.
T Consensus 371 ~~~~~~~~~~~~a~~TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~~----------~~L~~YDvViTTY~ 440 (901)
T KOG4439|consen 371 AARKAREKKGESASKTLIICPASLIHQWEAEVARRLEQNALSVYLYHGPNKREISA----------KELRKYDVVITTYN 440 (901)
T ss_pred HHHHhhcccccccCCeEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCCccccCCH----------HHHhhcceEEEeee
Confidence 322 122369999999999999999977653 38999999987411111 22378899999999
Q ss_pred hHHhh----------HhhhhccCccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCC
Q psy13010 156 LVVSD----------FKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSM 225 (573)
Q Consensus 156 ~~~~~----------~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~ 225 (573)
.+... ...+..+.|.+||+||||.++|+.++.+.++..|++.+||+|||||++|+..|+|+++.||...+
T Consensus 441 lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~p 520 (901)
T KOG4439|consen 441 LVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPP 520 (901)
T ss_pred ccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCC
Confidence 98772 25678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhhhhhhhhcccccccHHHHHHHHHhhccceeeccccchhc-----cCCCceEEEEEcCCCHHHHHHHHH
Q psy13010 226 FDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVEN-----ELSDKIEIMVYCPLTSRQKLLYSA 300 (573)
Q Consensus 226 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~k~~~~~-----~LP~~~~~~v~v~ls~~q~~~Y~~ 300 (573)
|++...|.+.+..+.. ....++.-+.+++|+||||..... .||.+..+.+.++|+..|...|+-
T Consensus 521 F~D~~~Wke~i~~~s~-----------~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i 589 (901)
T KOG4439|consen 521 FGDLKQWKENIDNMSK-----------GGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQI 589 (901)
T ss_pred cchHHHHHHhccCccc-----------cchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHH
Confidence 9999999988754322 234567788899999999998776 699999999999999999999999
Q ss_pred HHHHHHHHHhh---hhc----CCC-------------------------ccccchhhHHHHHHHHHHHHHhcCCcccccc
Q psy13010 301 LKKKIKIEDLI---HSS----SGG-------------------------SIQLSNNIASNLMNLVMQFRKVCNHPELFER 348 (573)
Q Consensus 301 ~~~~~~~~~~~---~~~----~~~-------------------------~~~~~~~~~~~~~~~l~~lr~~c~hp~l~~~ 348 (573)
+....+.-... ... .++ ....+....+.++.++++|||+|+||.+...
T Consensus 590 ~~~askk~~kq~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~ 669 (901)
T KOG4439|consen 590 MMEASKKLFKQFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKA 669 (901)
T ss_pred HHHHHHHHHHHHHHhhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhcc
Confidence 88776422211 000 000 0112345667899999999999999977753
Q ss_pred ccccCccccchhhhh--hhhccchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccCCchhhhhhhhHhhhhc
Q psy13010 349 RDAKAPLAMSCEDYH--RLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIH 426 (573)
Q Consensus 349 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 426 (573)
.............-. .......+.+.+......|.+..+ .
T Consensus 670 ~ld~~~~~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~------------e-------------------------- 711 (901)
T KOG4439|consen 670 ALDPEEFQMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNC------------E-------------------------- 711 (901)
T ss_pred ccCHHHhhhcCcchhhhhhhhhhHHHhhhhccccccccccc------------c--------------------------
Confidence 322211111100000 000001111111111111111000 0
Q ss_pred cCCCCccccchhHHHHHHHHHHHHHhhcCCchhhhhhcccCcccccccccccchhhHHHHhhccccccccccccHHHHHH
Q psy13010 427 SSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDD 506 (573)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~ 506 (573)
+.|.. .|.. .+.....|.|+..+++
T Consensus 712 ----------------------------d~p~~------------------~~~q---------~Fe~~r~S~Ki~~~l~ 736 (901)
T KOG4439|consen 712 ----------------------------DLPTA------------------FPDQ---------AFEPDRPSCKIAMVLE 736 (901)
T ss_pred ----------------------------ccccc------------------chhh---------hcccccchhHHHHHHH
Confidence 00000 0111 1334557999999999
Q ss_pred HHHHHHh-CCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCC-ceEEEe
Q psy13010 507 LLKRLKA-SGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTH-QSVGLL 572 (573)
Q Consensus 507 li~~~~~-~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~-~~v~Ll 572 (573)
.++.++. ..+|++|.|||+++|+++..++.+.|+.|..|+|.+..++|+++++.||...+ .+|+||
T Consensus 737 ~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLl 804 (901)
T KOG4439|consen 737 ILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLL 804 (901)
T ss_pred HHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEE
Confidence 9998854 58999999999999999999999999999999999999999999999997666 888876
No 14
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=1.3e-44 Score=363.14 Aligned_cols=281 Identities=36% Similarity=0.635 Sum_probs=230.8
Q ss_pred HHHHHHHHHHHHH---------hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCC--CCEEEEcCcccHHHHHHHHHHH
Q psy13010 44 YQLKGMNWLANLY---------DQGINGILADEMGLGKTVQSIAFLCHIAETYDVW--GPFLIISPASTLHNWQQEMERF 112 (573)
Q Consensus 44 ~Q~~~v~~l~~~~---------~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~--~~~LIV~P~~l~~qW~~el~~~ 112 (573)
||++|+.||+... ...+||||+||||+|||+++++++..+....+.. +++|||||.+++.+|..|+.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 7788999999999999999999999887765442 3699999999999999999999
Q ss_pred C-C-CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHH-----hhHhhhhccCccEEEEcccccccCcch
Q psy13010 113 V-P-DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVV-----SDFKYFNRIKWQYLILDEAQAIKSSSS 185 (573)
Q Consensus 113 ~-~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~-----~~~~~l~~~~~~~vIiDE~h~~kn~~s 185 (573)
+ | ..+++++.|...... ........++++|++|+.+. ...+.+...+|++||+||+|.++|..|
T Consensus 81 ~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s 151 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRR---------LSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDS 151 (299)
T ss_dssp SGT-TS-EEEESSSCHHHH---------TTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTS
T ss_pred ccccccccccccccccccc---------ccccccccceeeeccccccccccccccccccccccceeEEEecccccccccc
Confidence 9 3 589999998872211 12244578899999999999 667788889999999999999999999
Q ss_pred HHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccHHHHHHHHHhhccc
Q psy13010 186 MRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265 (573)
Q Consensus 186 ~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (573)
..++++..+++.++|+|||||+.|++.|+|++++||.++.+.+...|.+.|..+.. .........|..+++++
T Consensus 152 ~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~-------~~~~~~~~~L~~~l~~~ 224 (299)
T PF00176_consen 152 KRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDK-------ENSYENIERLRELLSEF 224 (299)
T ss_dssp HHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHH-------THHHHHHHHHHHHHCCC
T ss_pred cccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhcc-------ccccccccccccccchh
Confidence 99999999999999999999999999999999999999999999999999876511 12557788999999999
Q ss_pred eeeccccchhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHHHHHHHHhcCCccc
Q psy13010 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPEL 345 (573)
Q Consensus 266 ~~rr~k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~c~hp~l 345 (573)
++|+++.++...||+..+.++.|+||+.|++.|+.+......... ............++..+.+||++|+||.|
T Consensus 225 ~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~lr~~c~hp~l 298 (299)
T PF00176_consen 225 MIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLK------QSSRKKSKKLSSLLQILKRLRQVCNHPYL 298 (299)
T ss_dssp EECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCT------T-T--TCHHHHHHHHHHHHHHHHHH-THH
T ss_pred hhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHHhCCccc
Confidence 999999999778999999999999999999999988876532111 11123456688999999999999999987
Q ss_pred c
Q psy13010 346 F 346 (573)
Q Consensus 346 ~ 346 (573)
+
T Consensus 299 ~ 299 (299)
T PF00176_consen 299 V 299 (299)
T ss_dssp C
T ss_pred C
Confidence 4
No 15
>KOG1000|consensus
Probab=100.00 E-value=4.7e-44 Score=348.91 Aligned_cols=352 Identities=23% Similarity=0.301 Sum_probs=274.5
Q ss_pred CCCchhhhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHH
Q psy13010 32 PQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMER 111 (573)
Q Consensus 32 ~~p~~l~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~ 111 (573)
-+|+.+...|.|||++|+.|.++ ++++++||||||+|||++||++..+.... +|.|||||.++...|.+++.+
T Consensus 190 v~d~kLvs~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyraE----wplliVcPAsvrftWa~al~r 262 (689)
T KOG1000|consen 190 VMDPKLVSRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRAE----WPLLIVCPASVRFTWAKALNR 262 (689)
T ss_pred ccCHHHHHhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhhc----CcEEEEecHHHhHHHHHHHHH
Confidence 45677778999999999998754 78899999999999999999998887766 699999999999999999999
Q ss_pred HCCC-ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHH
Q psy13010 112 FVPD-FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKL 190 (573)
Q Consensus 112 ~~~~-~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~ 190 (573)
|+|. ..+.+..+..+... .-.....|.|+||+.+....+.+...+|.+||+||+|.+|+..+++.++
T Consensus 263 ~lps~~pi~vv~~~~D~~~------------~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka 330 (689)
T KOG1000|consen 263 FLPSIHPIFVVDKSSDPLP------------DVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKA 330 (689)
T ss_pred hcccccceEEEecccCCcc------------ccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhh
Confidence 9987 33444444322111 1113346999999999999999999899999999999999999999999
Q ss_pred HHhc--ccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccHHHHHHHHHhh-cccee
Q psy13010 191 LLGF--SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMIL-KPFML 267 (573)
Q Consensus 191 ~~~l--~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~ 267 (573)
+..+ .+++.+||||||.-.++.|||.++..+++.+|+++.+|..+||.....+... ...+..+..+|+.+| +..|+
T Consensus 331 ~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~-Dykg~tnl~EL~~lL~k~lMI 409 (689)
T KOG1000|consen 331 ATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCF-DYKGCTNLEELAALLFKRLMI 409 (689)
T ss_pred hhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceee-ecCCCCCHHHHHHHHHHHHHH
Confidence 8887 5889999999999999999999999999999999999999999755443221 222567788888887 55689
Q ss_pred eccccchhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHHHHHHHHhcCCccccc
Q psy13010 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347 (573)
Q Consensus 268 rr~k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~c~hp~l~~ 347 (573)
||+|.++..+|||++. .|.+-..+.+-+.-..+.+.... .......+. .-...++.-++.
T Consensus 410 RRlK~dvL~qLPpKrr-~Vv~~~~gr~da~~~~lv~~a~~--------~t~~~~~e~---~~~~l~l~y~~t-------- 469 (689)
T KOG1000|consen 410 RRLKADVLKQLPPKRR-EVVYVSGGRIDARMDDLVKAAAD--------YTKVNSMER---KHESLLLFYSLT-------- 469 (689)
T ss_pred HHHHHHHHhhCCccce-EEEEEcCCccchHHHHHHHHhhh--------cchhhhhhh---hhHHHHHHHHHh--------
Confidence 9999999999999954 44445555555555555443221 000000000 000000000000
Q ss_pred cccccCccccchhhhhhhhccchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccCCchhhhhhhhHhhhhcc
Q psy13010 348 RRDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHS 427 (573)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (573)
T Consensus 470 -------------------------------------------------------------------------------- 469 (689)
T KOG1000|consen 470 -------------------------------------------------------------------------------- 469 (689)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccchhHHHHHHHHHHHHHhhcCCchhhhhhcccCcccccccccccchhhHHHHhhccccccccccccHHHHHHH
Q psy13010 428 SSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDL 507 (573)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~l 507 (573)
.-.|+.++.+.
T Consensus 470 ---------------------------------------------------------------------giaK~~av~ey 480 (689)
T KOG1000|consen 470 ---------------------------------------------------------------------GIAKAAAVCEY 480 (689)
T ss_pred ---------------------------------------------------------------------cccccHHHHHH
Confidence 13488888888
Q ss_pred HHH----HHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEEe
Q psy13010 508 LKR----LKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGLL 572 (573)
Q Consensus 508 i~~----~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~Ll 572 (573)
|.. .-..+.|+|||+++..+||-|+..+..+++...||||+++..+|+..++.|+.+.+++|.+|
T Consensus 481 i~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvl 549 (689)
T KOG1000|consen 481 ILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVL 549 (689)
T ss_pred HHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEE
Confidence 877 33458999999999999999999999999999999999999999999999999999999886
No 16
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=3.3e-43 Score=403.62 Aligned_cols=412 Identities=37% Similarity=0.593 Sum_probs=329.6
Q ss_pred chhhhccHHHHHHHHHHHH-HHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCC-CCCEEEEcCcccHHHHHHHHHHH
Q psy13010 35 GLFRGNLKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDV-WGPFLIISPASTLHNWQQEMERF 112 (573)
Q Consensus 35 ~~l~~~L~~~Q~~~v~~l~-~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~-~~~~LIV~P~~l~~qW~~el~~~ 112 (573)
..+...|++||.++++|+. .......+|+++|+||+|||+++++++......... .+|.|||||.+++.+|.+|+.+|
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~ 412 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKF 412 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhh
Confidence 4666789999999999999 677788999999999999999999999886665554 57999999999999999999999
Q ss_pred CCCce-EEeecCChhH----HHHHHHHhhhcccccCCCCceEEEeehHhHHh---hHhhhhccCccEEEEcccccccCcc
Q psy13010 113 VPDFK-VVPYWGSPQE----RKILRQFWDMKNLHTKDASFHVVITSYQLVVS---DFKYFNRIKWQYLILDEAQAIKSSS 184 (573)
Q Consensus 113 ~~~~~-v~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~---~~~~l~~~~~~~vIiDE~h~~kn~~ 184 (573)
.|..+ +.++.|.... +..+........ ...++++++||+.+.. +...+....|+.+|+||+|++||..
T Consensus 413 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~ 488 (866)
T COG0553 413 APDLRLVLVYHGEKSELDKKREALRDLLKLHL----VIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ 488 (866)
T ss_pred CccccceeeeeCCcccccHHHHHHHHHhhhcc----cceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh
Confidence 99999 9999998763 444444321111 3458999999999999 8999999999999999999999999
Q ss_pred hHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHH-hhCCCCCC-ChHHHHHHHhhhhhhhhcccc-cccHHHHHHHHHh
Q psy13010 185 SMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLH-FIMPSMFD-SHDEFNEWFSKDIESHAENKT-SIDERHLSRLHMI 261 (573)
Q Consensus 185 s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~-~L~~~~~~-~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~ 261 (573)
|..+++++.+++.++++|||||+.|+..+||++++ |+.|+.++ +...|..+|..+......... .........|+.+
T Consensus 489 s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 568 (866)
T COG0553 489 SSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKL 568 (866)
T ss_pred hHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999 568999999988876654322 1122345558899
Q ss_pred hccceeeccccc--hhccCCCceEEEEEcCCCHHHHHHHHHHHH---HHHHHHhhhhcCCCccccchh-hHHHHHHHHHH
Q psy13010 262 LKPFMLRRIKKD--VENELSDKIEIMVYCPLTSRQKLLYSALKK---KIKIEDLIHSSSGGSIQLSNN-IASNLMNLVMQ 335 (573)
Q Consensus 262 l~~~~~rr~k~~--~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 335 (573)
++++++||++.+ +..+||++.+..+.|.|++.|..+|..... ................ .... ....++..+.+
T Consensus 569 i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 647 (866)
T COG0553 569 LSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDE-NRIGDSELNILALLTR 647 (866)
T ss_pred HHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccccchhhHHHHHHHH
Confidence 999999999999 888999999999999999999999999998 4322211111111100 0000 35688999999
Q ss_pred HHHhcCCcccccccc-ccCccccchhhhhhhhccchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccCCchh
Q psy13010 336 FRKVCNHPELFERRD-AKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPA 414 (573)
Q Consensus 336 lr~~c~hp~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~~~~~ 414 (573)
+|++|+||.++.... .... ..+.....+
T Consensus 648 lr~~~~~p~l~~~~~~~~~~-------------------------~~~~~~~~~-------------------------- 676 (866)
T COG0553 648 LRQICNHPALVDEGLEATFD-------------------------RIVLLLRED-------------------------- 676 (866)
T ss_pred HHHhccCccccccccccccc-------------------------hhhhhhhcc--------------------------
Confidence 999999999987431 0000 000000000
Q ss_pred hhhhhhHhhhhccCCCCccccchhHHHHHHHHHHHHHhhcCCchhhhhhcccCcccccccccccchhhHHHHhhcccccc
Q psy13010 415 LKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTL 494 (573)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (573)
..........
T Consensus 677 ----------------------------------------------------------------------~~~~~~~~~~ 686 (866)
T COG0553 677 ----------------------------------------------------------------------KDFDYLKKPL 686 (866)
T ss_pred ----------------------------------------------------------------------cccccccchh
Confidence 0000001122
Q ss_pred cccc-ccHHHHHHHH-HHHHhCCC--eEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEE
Q psy13010 495 VYDA-GKLSVLDDLL-KRLKASGH--RVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVG 570 (573)
Q Consensus 495 ~~~s-~Kl~~l~~li-~~~~~~~~--KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~ 570 (573)
+..| +|+..+.+++ ..++.+|. |+|||+||+.++++|+..|...++.+++++|+++.++|+..+++|++++...||
T Consensus 687 ~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~ 766 (866)
T COG0553 687 IQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVF 766 (866)
T ss_pred hhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceE
Confidence 3456 8999999999 78888898 999999999999999999999999999999999999999999999999888888
Q ss_pred Ee
Q psy13010 571 LL 572 (573)
Q Consensus 571 Ll 572 (573)
|+
T Consensus 767 ll 768 (866)
T COG0553 767 LL 768 (866)
T ss_pred EE
Confidence 86
No 17
>KOG1016|consensus
Probab=100.00 E-value=1.6e-44 Score=366.70 Aligned_cols=467 Identities=22% Similarity=0.292 Sum_probs=330.1
Q ss_pred CCccCCCCchhhhccHHHHHHHHHHHHHHH---------hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc
Q psy13010 27 TEVERPQPGLFRGNLKHYQLKGMNWLANLY---------DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS 97 (573)
Q Consensus 27 ~~~~~~~p~~l~~~L~~~Q~~~v~~l~~~~---------~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~ 97 (573)
.++.+-+-+.+...++|||+-||+||++.. ..|.||||||.||+|||+++++|+...+... ..+++|+|+
T Consensus 241 eee~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT-~AKtVL~iv 319 (1387)
T KOG1016|consen 241 EEEDIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHT-KAKTVLVIV 319 (1387)
T ss_pred CCcceeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcC-ccceEEEEE
Confidence 344556667777889999999999998655 4577999999999999999999999888764 447999999
Q ss_pred CcccHHHHHHHHHHHCCC-----------ceEEeecCChh---HHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH--
Q psy13010 98 PASTLHNWQQEMERFVPD-----------FKVVPYWGSPQ---ERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF-- 161 (573)
Q Consensus 98 P~~l~~qW~~el~~~~~~-----------~~v~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~-- 161 (573)
|...+.+|..|+..|.|. ++|.++.+..+ .+..+.. .+.....|+++.|+.|+-..
T Consensus 320 PiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~--------~Wv~~GGVlLvGYemfRLL~lk 391 (1387)
T KOG1016|consen 320 PINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIE--------QWVQTGGVLLVGYEMFRLLILK 391 (1387)
T ss_pred ehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHH--------HHhccCCEEEehHHHHHHHHHh
Confidence 999999999999999965 55666655432 2222222 22355579999999997532
Q ss_pred ------------------------------------hhhhccCccEEEEcccccccCcchHHHHHHHhcccCcEEEEecc
Q psy13010 162 ------------------------------------KYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205 (573)
Q Consensus 162 ------------------------------------~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgT 205 (573)
..|..-++|+||+||+|+|||..+.++.+++.++.++|+.|||-
T Consensus 392 ~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGY 471 (1387)
T KOG1016|consen 392 TLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGY 471 (1387)
T ss_pred cccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEecc
Confidence 12223478999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccH-----HHHHHHHHhhccceeeccccchhccCCC
Q psy13010 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDE-----RHLSRLHMILKPFMLRRIKKDVENELSD 280 (573)
Q Consensus 206 P~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~l~~~~~rr~k~~~~~~LP~ 280 (573)
|++|++-|.|+|+.|+.|+.+++..+|.+.|..|+.+++-.++.++. -..+.|+.+|.+|+.||+...+..-||.
T Consensus 472 PLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~ 551 (1387)
T KOG1016|consen 472 PLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPE 551 (1387)
T ss_pred ccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhccc
Confidence 99999999999999999999999999999999999998777777655 4467799999999999999999999999
Q ss_pred ceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHHHHHHHHhcCCccccccccccCccccchh
Q psy13010 281 KIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCE 360 (573)
Q Consensus 281 ~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~c~hp~l~~~~~~~~~~~~~~~ 360 (573)
+.++++.|.+|..|+++|+.+.-... .+...++... ...+.+..-.-++.+||.++.+..........-+
T Consensus 552 k~EyViLvr~s~iQR~LY~~Fm~d~~----r~~~~~~~~~------~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~d 621 (1387)
T KOG1016|consen 552 KKEYVILVRKSQIQRQLYRNFMLDAK----REIAANNDAV------FNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDD 621 (1387)
T ss_pred ccceEEEEeHHHHHHHHHHHHHHHHH----Hhhccccccc------cChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhh
Confidence 99999999999999999998873321 1111222211 1345566667788999998754332211111100
Q ss_pred hhhhhhccchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccCCchhhhhhhhHhhhhccCCCCccccchhHH
Q psy13010 361 DYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIA 440 (573)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (573)
.........+ ...-|+-.+..+.++.. ...+..
T Consensus 622 l~vee~~~ag----~~~~~~P~~~~~~~~s~-------------------------------------------~laSs~ 654 (1387)
T KOG1016|consen 622 LRVEEMKFAG----LQQQQSPFNSIPSNPST-------------------------------------------PLASST 654 (1387)
T ss_pred hhHHHHhhhc----ccccCCCCCCCCCCCCC-------------------------------------------cccchh
Confidence 0000000000 00111111111111111 011111
Q ss_pred HHHHHHHHHHHhhcCCchhhhhhcccCcccccccccccchhhHHHHhhccccccccccccHHHHHHHHHHHHhCCCeEEE
Q psy13010 441 SNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRLKASGHRVLV 520 (573)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~li~~~~~~~~KvlI 520 (573)
+...|.....+.....|...+++++.- .| ..+-.+....=.......++|+..+++++.+-..-|+|+||
T Consensus 655 ~k~~n~t~kp~~s~~~p~f~ee~~e~~-------~y---~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~kil~ 724 (1387)
T KOG1016|consen 655 SKSANKTKKPRGSKKAPKFDEEDEEVE-------KY---SDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEKILI 724 (1387)
T ss_pred hhhhcccCCcccCcCCCCccccccccc-------ch---hhHHHHHHhhhhcccccCCCceEEEEeeeccccccCceEEE
Confidence 111111111112122222222211110 00 11222223333445566788999999999987778999999
Q ss_pred EecchhHHHHHHHHHHh------------------CCCeEEEecCCCCHHHHHHHHhCcCCCCCceE
Q psy13010 521 YSQMTKMIDLLEEFMVY------------------RKYRFMRLDGSSKISERRDMFAVPGILTHQSV 569 (573)
Q Consensus 521 Fsq~~~~l~~l~~~L~~------------------~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 569 (573)
|||...+||+|++.|.. +++.|++++|.++...|++.|++||..+++.-
T Consensus 725 fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsW 791 (1387)
T KOG1016|consen 725 FSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSW 791 (1387)
T ss_pred eecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCcee
Confidence 99999999999999975 35779999999999999999999999999983
No 18
>KOG1001|consensus
Probab=100.00 E-value=9.9e-43 Score=370.24 Aligned_cols=444 Identities=23% Similarity=0.315 Sum_probs=344.8
Q ss_pred HHHHHHHHHHHHHH-hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcC------CCCCEEEEcCcccHHHHHHHHHHHCC-
Q psy13010 43 HYQLKGMNWLANLY-DQGINGILADEMGLGKTVQSIAFLCHIAETYD------VWGPFLIISPASTLHNWQQEMERFVP- 114 (573)
Q Consensus 43 ~~Q~~~v~~l~~~~-~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~------~~~~~LIV~P~~l~~qW~~el~~~~~- 114 (573)
.+|..+--|+-... ..-.|||++|+||+|||+++++++..-..... ..+.+|||||.+++.||..|+.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 55555544332222 23458899999999999999999987766555 56789999999999999999955443
Q ss_pred -CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHh
Q psy13010 115 -DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLG 193 (573)
Q Consensus 115 -~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~ 193 (573)
.+.+.+|+|..++. ....+++||+|||..+.. ..+..+.|-++|+||+|.++|.+++.++++..
T Consensus 215 ~~l~v~v~~gr~kd~-------------~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~ 279 (674)
T KOG1001|consen 215 DKLSIYVYHGRTKDK-------------SELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQ 279 (674)
T ss_pred cceEEEEeccccccc-------------chhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhhee
Confidence 37788888811111 233788899999999986 56677899999999999999999999999999
Q ss_pred cccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccHHHHHHHHHhhccceeeccccc
Q psy13010 194 FSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKD 273 (573)
Q Consensus 194 l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~k~~ 273 (573)
+++.+||.|||||++|+..|+|+++.|+.-+++..+..|...+..|...... ......++..|+.+++||+|..
T Consensus 280 L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~------~~~~k~l~~~L~~v~lrrtK~~ 353 (674)
T KOG1001|consen 280 LDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY------KEGVKTLQGILKKVMLRRTKEM 353 (674)
T ss_pred eccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH------HHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999999999999888765521 4567889999999999999974
Q ss_pred hh-----ccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHHHHHHHHhcCCcccccc
Q psy13010 274 VE-----NELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFER 348 (573)
Q Consensus 274 ~~-----~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~c~hp~l~~~ 348 (573)
-. -.|||+....+.+.++..++..|..+..............+.. ...+..++..+.+|||+|+||.++..
T Consensus 354 ~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~----~~~Y~~~l~~lLrlrq~c~h~~lv~~ 429 (674)
T KOG1001|consen 354 EVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTV----SSTYAFFLKNLLRLRQACDHSLLVMY 429 (674)
T ss_pred cccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchh----hhhHHHHHHHHHHHHHHccchHhhhh
Confidence 22 2599999999999999999999999998876554444444433 23467889999999999999999875
Q ss_pred ccccCccccchhhhhhhhccchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccc---cCCchhhhhhhhHhhhh
Q psy13010 349 RDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQ---NMVSPALKKKIKIEDLI 425 (573)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~---~~~~~~~~~~~~~~~~~ 425 (573)
...........+........+ +... ..|.+|.+ .+.+.++.|+|.+|..|.+.... ...|+.|+.......+.
T Consensus 430 ~~~~~~~~~~~~~~~~~~i~~-l~~~--~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~ 505 (674)
T KOG1001|consen 430 EMDSLGDSGSAAALIIRLIVD-LSVS--HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLL 505 (674)
T ss_pred hhhccccccccchHHHHHHHH-Hhhc--cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHh
Confidence 444333332222222111100 1111 89999999 99999999999999999875533 34577777777666665
Q ss_pred ccCCCCccccchhHHHHHHHHHHHHHhhcCCchhhhhhcccCcccccccccccchhhHHHHhhccccccccccccHHHHH
Q psy13010 426 HSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLD 505 (573)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~ 505 (573)
......+.... . . ..|.|+..+.
T Consensus 506 s~~~~~~~~~~------~-----------------------------------------------~----~~s~ki~~~~ 528 (674)
T KOG1001|consen 506 SANPLPSIIND------L-----------------------------------------------L----PESSKIYAFL 528 (674)
T ss_pred hcccccchhhh------c-----------------------------------------------c----chhhhhHHHH
Confidence 43332222111 0 0 0377999999
Q ss_pred HHHHHHHhCCC-eEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEEe
Q psy13010 506 DLLKRLKASGH-RVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGLL 572 (573)
Q Consensus 506 ~li~~~~~~~~-KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~Ll 572 (573)
.++........ |+||||||+.++++++..|...|+.+.+++|.++++.|.+.+..|..++..+|+|+
T Consensus 529 ~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~ 596 (674)
T KOG1001|consen 529 KILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLM 596 (674)
T ss_pred HHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHH
Confidence 98884433334 99999999999999999999999999999999999999999999999998888764
No 19
>KOG0383|consensus
Probab=100.00 E-value=1.6e-44 Score=377.81 Aligned_cols=391 Identities=38% Similarity=0.611 Sum_probs=333.2
Q ss_pred ccCCCCchhh---hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHH
Q psy13010 29 VERPQPGLFR---GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNW 105 (573)
Q Consensus 29 ~~~~~p~~l~---~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW 105 (573)
..-.+|..++ ..|.+||.+|++|+...+..+..+|+|||||+|||++++.++..++.....++|.|+++|.+.+-+|
T Consensus 281 ~~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nw 360 (696)
T KOG0383|consen 281 PYEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNW 360 (696)
T ss_pred CcccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCC
Confidence 3345666666 5899999999999999999999999999999999999999999999988888999999999999999
Q ss_pred HHHHHHHCCCceEEeecCChhHHHHHHHHhhhccc-------------ccCCCCceEEEeehHhHHhhHhhhhccCccEE
Q psy13010 106 QQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNL-------------HTKDASFHVVITSYQLVVSDFKYFNRIKWQYL 172 (573)
Q Consensus 106 ~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~-------------~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~v 172 (573)
..++..|.|...+..|.|+.+.+..++....-... ......+.+.+++|++...+..-+..+.|..+
T Consensus 361 e~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~l 440 (696)
T KOG0383|consen 361 EREFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLL 440 (696)
T ss_pred CCchhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhccee
Confidence 99999999999999999999888877765532221 23456788999999999999999999999999
Q ss_pred EEcccccccCcchHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccH
Q psy13010 173 ILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDE 252 (573)
Q Consensus 173 IiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 252 (573)
|+||+|+++|..|..++.+......++++|||||.+|++.+|+++|+||.++.+.+...|.+.|..-. .+
T Consensus 441 ivde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~----------~~ 510 (696)
T KOG0383|consen 441 IVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDIS----------CE 510 (696)
T ss_pred EeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhh----------HH
Confidence 99999999999999999999999999999999999999999999999999999999999998886432 45
Q ss_pred HHHHHHHHhhccceeeccccchhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHH
Q psy13010 253 RHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNL 332 (573)
Q Consensus 253 ~~~~~l~~~l~~~~~rr~k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (573)
.....++.++.++|+||.+.|+....|++.+-.+.+.||+-|++.|+.++.+--.- ...+. ....+.+.
T Consensus 511 ~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~----l~~~~-------~~~s~~n~ 579 (696)
T KOG0383|consen 511 EQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQG----LLAGV-------HQYSLLNI 579 (696)
T ss_pred HHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHH----Hhhcc-------hhHHHHHH
Confidence 67888999999999999999999999999999999999999999999887653111 11111 13467889
Q ss_pred HHHHHHhcCCccccccccccCccccchhhhhhhhccchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccCCc
Q psy13010 333 VMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVS 412 (573)
Q Consensus 333 l~~lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~~~ 412 (573)
++.||++|+||+++...+..
T Consensus 580 ~mel~K~~~hpy~~~~~e~~------------------------------------------------------------ 599 (696)
T KOG0383|consen 580 VMELRKQCNHPYLSPLEEPL------------------------------------------------------------ 599 (696)
T ss_pred HHHHHHhhcCcccCcccccc------------------------------------------------------------
Confidence 99999999999998631100
Q ss_pred hhhhhhhhHhhhhccCCCCccccchhHHHHHHHHHHHHHhhcCCchhhhhhcccCcccccccccccchhhHHHHhhcccc
Q psy13010 413 PALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKL 492 (573)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (573)
+........
T Consensus 600 -----------------------------------------------------------------------~~~~~~~~~ 608 (696)
T KOG0383|consen 600 -----------------------------------------------------------------------EENGEYLGS 608 (696)
T ss_pred -----------------------------------------------------------------------ccchHHHHH
Confidence 000011122
Q ss_pred ccccccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcC-CCCCceEEE
Q psy13010 493 TLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPG-ILTHQSVGL 571 (573)
Q Consensus 493 ~~~~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~-~~~~~~v~L 571 (573)
+++..|+|+..|...++.+.+.|+||+||+|++.++|+|+.++...| .|.||||.....+|++++++|| .+.+-.+||
T Consensus 609 ~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfl 687 (696)
T KOG0383|consen 609 ALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFL 687 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEE
Confidence 33446899999999999999999999999999999999999999999 9999999999999999999999 445555555
Q ss_pred e
Q psy13010 572 L 572 (573)
Q Consensus 572 l 572 (573)
|
T Consensus 688 l 688 (696)
T KOG0383|consen 688 L 688 (696)
T ss_pred e
Confidence 4
No 20
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.9e-38 Score=349.88 Aligned_cols=351 Identities=19% Similarity=0.187 Sum_probs=249.6
Q ss_pred hhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCce
Q psy13010 38 RGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFK 117 (573)
Q Consensus 38 ~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~ 117 (573)
...|.|||+.++..+.. ....+.|||||||+|||++|++++..+... +..+|+|||||.+++.||..|+.+++ ++.
T Consensus 150 ~~~l~pHQl~~~~~vl~--~~~~R~LLADEvGLGKTIeAglil~~l~~~-g~~~rvLIVvP~sL~~QW~~El~~kF-~l~ 225 (956)
T PRK04914 150 RASLIPHQLYIAHEVGR--RHAPRVLLADEVGLGKTIEAGMIIHQQLLT-GRAERVLILVPETLQHQWLVEMLRRF-NLR 225 (956)
T ss_pred CCCCCHHHHHHHHHHhh--ccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-CCCCcEEEEcCHHHHHHHHHHHHHHh-CCC
Confidence 45799999999876544 346778999999999999999999888776 44579999999999999999998776 455
Q ss_pred EEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH---hhhhccCccEEEEcccccccC---cchHHHHHH
Q psy13010 118 VVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF---KYFNRIKWQYLILDEAQAIKS---SSSMRWKLL 191 (573)
Q Consensus 118 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~---~~l~~~~~~~vIiDE~h~~kn---~~s~~~~~~ 191 (573)
+.++.+..-.... ....+....++++|+||+.+.++. ..+....|++||+||||++++ ..|..++.+
T Consensus 226 ~~i~~~~~~~~~~-------~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v 298 (956)
T PRK04914 226 FSLFDEERYAEAQ-------HDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV 298 (956)
T ss_pred eEEEcCcchhhhc-------ccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHH
Confidence 5566554321100 011122245789999999998753 456778999999999999985 356779999
Q ss_pred Hhc--ccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhh--hhhhhh---cccccccHHH----------
Q psy13010 192 LGF--SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSK--DIESHA---ENKTSIDERH---------- 254 (573)
Q Consensus 192 ~~l--~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~--~~~~~~---~~~~~~~~~~---------- 254 (573)
..+ ++.++++|||||++|+..++|++++||+|+.|+++..|.+..+. ++.... ..........
T Consensus 299 ~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~ 378 (956)
T PRK04914 299 EQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGE 378 (956)
T ss_pred HHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcc
Confidence 888 57799999999999999999999999999999999999875542 210000 0000000000
Q ss_pred ---------------------HHHHHHh-----hccceeeccccchhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHH
Q psy13010 255 ---------------------LSRLHMI-----LKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIE 308 (573)
Q Consensus 255 ---------------------~~~l~~~-----l~~~~~rr~k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~ 308 (573)
-..+..+ ...+|+|+++.++.. +|++..+.+.+++++...+.+....
T Consensus 379 ~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~-fp~R~~~~~~l~~~~~y~~~~~~~~------ 451 (956)
T PRK04914 379 QDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKG-FPKRELHPIPLPLPEQYQTAIKVSL------ 451 (956)
T ss_pred cchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcC-CCcCceeEeecCCCHHHHHHHHHhH------
Confidence 0111222 236788999999875 9999999999999765333332100
Q ss_pred HhhhhcCCCccccchhhHHHHHHHHHHHHHhcCCccccccccccCccccchhhhhhhhccchhhccccCCCCCCCCCCCC
Q psy13010 309 DLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRD 388 (573)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (573)
...+++ +.+|.-+....
T Consensus 452 ------------------------~~~~~~-~l~pe~~~~~~-------------------------------------- 468 (956)
T PRK04914 452 ------------------------EARARD-MLYPEQIYQEF-------------------------------------- 468 (956)
T ss_pred ------------------------HHHHHh-hcCHHHHHHHH--------------------------------------
Confidence 001111 12221110000
Q ss_pred CcccCCCCCCCCcccccccccCCchhhhhhhhHhhhhccCCCCccccchhHHHHHHHHHHHHHhhcCCchhhhhhcccCc
Q psy13010 389 PVILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAP 468 (573)
Q Consensus 389 ~~~~~c~h~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (573)
.
T Consensus 469 --------------------------------------------------------------~----------------- 469 (956)
T PRK04914 469 --------------------------------------------------------------E----------------- 469 (956)
T ss_pred --------------------------------------------------------------h-----------------
Confidence 0
Q ss_pred ccccccccccchhhHHHHhhccccccccccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHH-hCCCeEEEecC
Q psy13010 469 LAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMV-YRKYRFMRLDG 547 (573)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~-~~gi~~~~i~G 547 (573)
........++|+.+|.++++.. .++|+||||++..+++.|.+.|+ ..|+.+..|+|
T Consensus 470 ---------------------~~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG 526 (956)
T PRK04914 470 ---------------------DNATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHE 526 (956)
T ss_pred ---------------------hhhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEEC
Confidence 0000011367999999999875 37899999999999999999994 67999999999
Q ss_pred CCCHHHHHHHHhCcCCCC-CceEEE
Q psy13010 548 SSKISERRDMFAVPGILT-HQSVGL 571 (573)
Q Consensus 548 ~~~~~~R~~~i~~F~~~~-~~~v~L 571 (573)
+++..+|.++++.|++++ .+.|++
T Consensus 527 ~~s~~eR~~~~~~F~~~~~~~~VLI 551 (956)
T PRK04914 527 GMSIIERDRAAAYFADEEDGAQVLL 551 (956)
T ss_pred CCCHHHHHHHHHHHhcCCCCccEEE
Confidence 999999999999999864 666664
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=2.7e-29 Score=268.44 Aligned_cols=196 Identities=18% Similarity=0.390 Sum_probs=138.3
Q ss_pred hhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcc-cHHHHHHHHHHHC--C
Q psy13010 38 RGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS-TLHNWQQEMERFV--P 114 (573)
Q Consensus 38 ~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~-l~~qW~~el~~~~--~ 114 (573)
..+|+|||.+++.++... ....+|+|..++|+|||+++++++..+. +++|||||.. ++.||.++|.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~~~-gr~r~GIIvLPtGaGKTlvai~aa~~l~------k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVTAACTVK------KSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHHhc-CCCCCcEEEeCCCCChHHHHHHHHHHhC------CCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 458999999999877431 1125789999999999999998877652 5899999955 5889999999996 3
Q ss_pred CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhh----------HhhhhccCccEEEEcccccccCcc
Q psy13010 115 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD----------FKYFNRIKWQYLILDEAQAIKSSS 184 (573)
Q Consensus 115 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~----------~~~l~~~~~~~vIiDE~h~~kn~~ 184 (573)
...+..|.|..+.. .....+|+|+||+++... .+.|....|++||+||+|++...
T Consensus 326 ~~~I~~~tg~~k~~--------------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~- 390 (732)
T TIGR00603 326 DSQICRFTSDAKER--------------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA- 390 (732)
T ss_pred CceEEEEecCcccc--------------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH-
Confidence 46677777754321 113467999999998642 23455668999999999999543
Q ss_pred hHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccHHHHHHHHHhhcc
Q psy13010 185 SMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKP 264 (573)
Q Consensus 185 s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (573)
...+.+..+.+.++|+|||||.+++- .+..+.++ +.|
T Consensus 391 -~fr~il~~l~a~~RLGLTATP~ReD~--~~~~L~~L----------------------------------------iGP 427 (732)
T TIGR00603 391 -MFRRVLTIVQAHCKLGLTATLVREDD--KITDLNFL----------------------------------------IGP 427 (732)
T ss_pred -HHHHHHHhcCcCcEEEEeecCcccCC--chhhhhhh----------------------------------------cCC
Confidence 23335666789999999999998762 22223332 222
Q ss_pred ceeeccccchh--ccCCCceEEEEEcCCCHHHHHHH
Q psy13010 265 FMLRRIKKDVE--NELSDKIEIMVYCPLTSRQKLLY 298 (573)
Q Consensus 265 ~~~rr~k~~~~--~~LP~~~~~~v~v~ls~~q~~~Y 298 (573)
.+.+....++. ..|.+.....|.|+|+++....|
T Consensus 428 ~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~y 463 (732)
T TIGR00603 428 KLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREY 463 (732)
T ss_pred eeeecCHHHHHhCCccccceEEEEEecCCHHHHHHH
Confidence 22222222222 24778888899999999865555
No 22
>KOG0298|consensus
Probab=99.91 E-value=1.6e-24 Score=233.82 Aligned_cols=270 Identities=24% Similarity=0.368 Sum_probs=205.0
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhh---------------cCCCCCEEEEcCcccHHHHHHHHHHHCCCc-eEEee
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAET---------------YDVWGPFLIISPASTLHNWQQEMERFVPDF-KVVPY 121 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~---------------~~~~~~~LIV~P~~l~~qW~~el~~~~~~~-~v~~~ 121 (573)
.+..++.+++||+|||...+++...-... ...-|++|||||..++.||..||.++.+.. +++.|
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEEE
Confidence 34466999999999999887765533211 112468999999999999999999999876 99999
Q ss_pred cCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH----------------------hhhhccCccEEEEccccc
Q psy13010 122 WGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF----------------------KYFNRIKWQYLILDEAQA 179 (573)
Q Consensus 122 ~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~----------------------~~l~~~~~~~vIiDE~h~ 179 (573)
.|-.+.- ........+||||+|||+.++.+. ..|..+.|.+|++|||+.
T Consensus 453 ~Girk~~---------~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQM 523 (1394)
T KOG0298|consen 453 FGIRKTF---------WLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQM 523 (1394)
T ss_pred echhhhc---------ccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHh
Confidence 9964321 112244589999999999998764 345557899999999999
Q ss_pred ccCcchHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccHHHHHHHH
Q psy13010 180 IKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLH 259 (573)
Q Consensus 180 ~kn~~s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (573)
+....|+..+-+..|.+.++|++||||+++ ..+|+.++.||.-.+|.....|.+....+.... .....+.
T Consensus 524 vesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r---------a~~~~~~ 593 (1394)
T KOG0298|consen 524 VESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR---------AKCEPLL 593 (1394)
T ss_pred hcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH---------hhhhhHH
Confidence 998888888889999999999999999999 999999999999888999999998887766543 2234567
Q ss_pred Hhhccceeeccccchhcc--CCCceEEEEEcCCCHHHHHHH----HHHHHHHHHHHhhhh-----cCCCccccchhhHHH
Q psy13010 260 MILKPFMLRRIKKDVENE--LSDKIEIMVYCPLTSRQKLLY----SALKKKIKIEDLIHS-----SSGGSIQLSNNIASN 328 (573)
Q Consensus 260 ~~l~~~~~rr~k~~~~~~--LP~~~~~~v~v~ls~~q~~~Y----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 328 (573)
.++...+.|+.+..+..+ +||..+.+....+++.|...| ......+........ .+.+...........
T Consensus 594 dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~ 673 (1394)
T KOG0298|consen 594 DLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAI 673 (1394)
T ss_pred HHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHH
Confidence 788888899999888764 788877666667776664444 444444432222222 122223445666788
Q ss_pred HHHHHHHHHHhcCCcccc
Q psy13010 329 LMNLVMQFRKVCNHPELF 346 (573)
Q Consensus 329 ~~~~l~~lr~~c~hp~l~ 346 (573)
+...+.+|||+|+||.+.
T Consensus 674 i~~~l~rLRq~Cchplv~ 691 (1394)
T KOG0298|consen 674 ILKWLLRLRQACCHPLVG 691 (1394)
T ss_pred HHHHHHHHHHhhcccccc
Confidence 999999999999999764
No 23
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.91 E-value=8.1e-23 Score=213.19 Aligned_cols=298 Identities=17% Similarity=0.244 Sum_probs=212.9
Q ss_pred hhhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCC
Q psy13010 37 FRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPD 115 (573)
Q Consensus 37 l~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~ 115 (573)
....|++||.+++.-+...+..+.+|++...+|.|||++++.++..+.. ++||||| ..++.||.+.+.+++..
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCC
Confidence 3457999999999866665555888899999999999999998888765 4899999 88889999888888754
Q ss_pred c-eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhh--HhhhhccCccEEEEcccccccCcchHHHHHHH
Q psy13010 116 F-KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD--FKYFNRIKWQYLILDEAQAIKSSSSMRWKLLL 192 (573)
Q Consensus 116 ~-~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~--~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~ 192 (573)
. .+..+.|..++.. . ..|.+.||+++.+. ...+..-+|++||+||+|++..+.... ...
T Consensus 107 ~~~~g~~~~~~~~~~---------------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~--~~~ 168 (442)
T COG1061 107 NDEIGIYGGGEKELE---------------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRR--ILE 168 (442)
T ss_pred ccccceecCceeccC---------------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHH--HHH
Confidence 3 4556666543211 1 46999999999885 455555589999999999997654322 233
Q ss_pred hcccCc-EEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccHHHHHHHHHhhccceeeccc
Q psy13010 193 GFSCRN-RLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIK 271 (573)
Q Consensus 193 ~l~~~~-~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~k 271 (573)
.+.+.+ +++|||||...+......+ ...+.+.+.....
T Consensus 169 ~~~~~~~~LGLTATp~R~D~~~~~~l-----------------------------------------~~~~g~~vy~~~~ 207 (442)
T COG1061 169 LLSAAYPRLGLTATPEREDGGRIGDL-----------------------------------------FDLIGPIVYEVSL 207 (442)
T ss_pred hhhcccceeeeccCceeecCCchhHH-----------------------------------------HHhcCCeEeecCH
Confidence 344555 9999999987553333333 3333344444444
Q ss_pred cchh--ccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHHHHHHHHhcCCccccccc
Q psy13010 272 KDVE--NELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 349 (573)
Q Consensus 272 ~~~~--~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~c~hp~l~~~~ 349 (573)
.+.. ..|.|.....+.+.+++.++..|................ .......+.
T Consensus 208 ~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~----------- 261 (442)
T COG1061 208 KELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT---------------LRAENEARR----------- 261 (442)
T ss_pred HHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh---------------hhHHHHHHH-----------
Confidence 4432 358899999999999999999998776554211000000 000000000
Q ss_pred cccCccccchhhhhhhhccchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccCCchhhhhhhhHhhhhccCC
Q psy13010 350 DAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSS 429 (573)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (573)
T Consensus 262 -------------------------------------------------------------------------------- 261 (442)
T COG1061 262 -------------------------------------------------------------------------------- 261 (442)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccchhHHHHHHHHHHHHHhhcCCchhhhhhcccCcccccccccccchhhHHHHhhccccccccccccHHHHHHHHH
Q psy13010 430 GGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLK 509 (573)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~li~ 509 (573)
.......|+..+..++.
T Consensus 262 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 278 (442)
T COG1061 262 ---------------------------------------------------------------IAIASERKIAAVRGLLL 278 (442)
T ss_pred ---------------------------------------------------------------HhhccHHHHHHHHHHHH
Confidence 00113457777888887
Q ss_pred HHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 510 RLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 510 ~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
... .+.+++||+.+......+...|...|+ +..++|++|.++|.+++++|++++ ..|+.
T Consensus 279 ~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~-~~~lv 337 (442)
T COG1061 279 KHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG-IKVLV 337 (442)
T ss_pred Hhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC-CCEEE
Confidence 654 789999999999999999999999999 899999999999999999999866 55543
No 24
>PRK13766 Hef nuclease; Provisional
Probab=99.90 E-value=3.9e-21 Score=216.75 Aligned_cols=210 Identities=16% Similarity=0.145 Sum_probs=138.9
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc-ccHHHHHHHHHHHCCC--c
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA-STLHNWQQEMERFVPD--F 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~-~l~~qW~~el~~~~~~--~ 116 (573)
++++||.+.+..+.. .++|++.++|+|||++++.++...... ..+++|||||. .++.||.+++.+++.. .
T Consensus 15 ~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~~--~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 87 (773)
T PRK13766 15 EARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLHK--KGGKVLILAPTKPLVEQHAEFFRKFLNIPEE 87 (773)
T ss_pred CccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHHh--CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCc
Confidence 689999998875533 278999999999999988877766542 23689999995 8999999999988643 4
Q ss_pred eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH--hhhhccCccEEEEcccccccCcchHHHHHHHhc
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF--KYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF 194 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~--~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l 194 (573)
++.++.|..........+ ..++|+++|++.+..+. ..+....|++||+||+|++.+..+..+.+-...
T Consensus 88 ~v~~~~g~~~~~~r~~~~----------~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~ 157 (773)
T PRK13766 88 KIVVFTGEVSPEKRAELW----------EKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYH 157 (773)
T ss_pred eEEEEeCCCCHHHHHHHH----------hCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHH
Confidence 777787764433221111 34679999999997754 233445789999999999976554433322222
Q ss_pred ---ccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccHHHHHHHHHhhccceeeccc
Q psy13010 195 ---SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIK 271 (573)
Q Consensus 195 ---~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~k 271 (573)
+..++++|||||..+ ...+..++.-|.......+. +..
T Consensus 158 ~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~--------------------------------------~~~ 198 (773)
T PRK13766 158 EDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRT--------------------------------------EDD 198 (773)
T ss_pred hcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcC--------------------------------------CCC
Confidence 244689999999875 44555444444221111100 111
Q ss_pred cchhccCCCceEEEEEcCCCHHHHHHHHHHHHHH
Q psy13010 272 KDVENELSDKIEIMVYCPLTSRQKLLYSALKKKI 305 (573)
Q Consensus 272 ~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~ 305 (573)
.++...+.+....++.++|++....++..+....
T Consensus 199 ~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~ 232 (773)
T PRK13766 199 PDVKPYVHKVKIEWVRVELPEELKEIRDLLNEAL 232 (773)
T ss_pred hhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHH
Confidence 1222234445567788888888877777665544
No 25
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.9e-20 Score=186.19 Aligned_cols=391 Identities=16% Similarity=0.156 Sum_probs=225.6
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHC--CC
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFV--PD 115 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~--~~ 115 (573)
.+.+.||...+.-. +. .+++++-++|+|||++|+.++...+...+ |.+|+++| +.|+.|-.+.+.+.+ |.
T Consensus 14 ie~R~YQ~~i~a~a---l~--~NtLvvlPTGLGKT~IA~~V~~~~l~~~~--~kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 14 IEPRLYQLNIAAKA---LF--KNTLVVLPTGLGKTFIAAMVIANRLRWFG--GKVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccHHHHHHHHHHHH---hh--cCeEEEecCCccHHHHHHHHHHHHHHhcC--CeEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 36899999887633 33 36799999999999999888886666544 47999999 999999999999887 55
Q ss_pred ceEEeecCCh--hHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH--hhhhccCccEEEEcccccccCcchHHHHHH
Q psy13010 116 FKVVPYWGSP--QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF--KYFNRIKWQYLILDEAQAIKSSSSMRWKLL 191 (573)
Q Consensus 116 ~~v~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~--~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~ 191 (573)
..+..+.|.- +.+...+ ....|++.|..++.++. ..+.--.+.++||||||+.-+..+-.+-+=
T Consensus 87 ~~i~~ltGev~p~~R~~~w------------~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~ 154 (542)
T COG1111 87 DEIAALTGEVRPEEREELW------------AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAK 154 (542)
T ss_pred hheeeecCCCChHHHHHHH------------hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHH
Confidence 7888898863 3344333 45679999999999875 345555788999999999866555444433
Q ss_pred Hhc---ccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccHHHHHHHHHhhccceee
Q psy13010 192 LGF---SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLR 268 (573)
Q Consensus 192 ~~l---~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~r 268 (573)
..+ +...+++|||||-.. .+.+...++=|+ ++.+.+|
T Consensus 155 ~y~~~~k~~~ilgLTASPGs~-~ekI~eV~~nLg---------------------------------------Ie~vevr 194 (542)
T COG1111 155 EYLRSAKNPLILGLTASPGSD-LEKIQEVVENLG---------------------------------------IEKVEVR 194 (542)
T ss_pred HHHHhccCceEEEEecCCCCC-HHHHHHHHHhCC---------------------------------------cceEEEe
Confidence 333 344689999999763 233333332221 1222222
Q ss_pred cc-ccchhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccch-hhHHHHHHHH-HHHHHhcCCccc
Q psy13010 269 RI-KKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSN-NIASNLMNLV-MQFRKVCNHPEL 345 (573)
Q Consensus 269 r~-k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l-~~lr~~c~hp~l 345 (573)
.- -.|+..++-+...+++.|+|+++=.++-+.+.+-+. ..+......+-..... .....++... .++....+-..
T Consensus 195 TE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~-~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~- 272 (542)
T COG1111 195 TEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALK-PRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDS- 272 (542)
T ss_pred cCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHH-HHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccH-
Confidence 21 123556677888999999999887665554444332 1111122111111100 1111222222 11111110000
Q ss_pred cccccccCccccchhhhhhhhccchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccCCchhhhhhhhHhhhh
Q psy13010 346 FERRDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLI 425 (573)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 425 (573)
..+. ..+.-..+-+.....+-+-
T Consensus 273 --------------~~~~-------------------------------------------~l~~~a~~~kl~~a~elle 295 (542)
T COG1111 273 --------------DKFR-------------------------------------------LLSVLAEAIKLAHALELLE 295 (542)
T ss_pred --------------HHHH-------------------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 0000 0000001111111122222
Q ss_pred ccCCCCccccchhHHHHHH-HHHHHHHhhcCCchhhhhhcccCcccccccccccchhhHHHHhhccccccccccccHHHH
Q psy13010 426 HSSSGGSIQLSNNIASNLM-NLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVL 504 (573)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l 504 (573)
++....-.++-....+... +.......+..+++.+.... ..... .......+|++.+
T Consensus 296 tqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~---------------------~~~~~-~~~~v~HPKl~~l 353 (542)
T COG1111 296 TQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALR---------------------LLIRA-DESGVEHPKLEKL 353 (542)
T ss_pred hhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHH---------------------HHHHh-ccccCCCccHHHH
Confidence 2211111111110000000 00111112222222221110 00111 2333467899999
Q ss_pred HHHHHHHHh--CCCeEEEEecchhHHHHHHHHHHhCCCeEE-EecC--------CCCHHHHHHHHhCcCCCCCceEE
Q psy13010 505 DDLLKRLKA--SGHRVLVYSQMTKMIDLLEEFMVYRKYRFM-RLDG--------SSKISERRDMFAVPGILTHQSVG 570 (573)
Q Consensus 505 ~~li~~~~~--~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~-~i~G--------~~~~~~R~~~i~~F~~~~~~~v~ 570 (573)
.+++++..+ .+.+|||||+|.+|+..|-..|...|+... +|-| +|++++..++|++|+++. +.|+
T Consensus 354 ~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge-~nVL 429 (542)
T COG1111 354 REILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGE-YNVL 429 (542)
T ss_pred HHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCC-ceEE
Confidence 999999874 578999999999999999999999988876 7755 599999999999999865 4554
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.86 E-value=7.8e-20 Score=194.70 Aligned_cols=146 Identities=18% Similarity=0.259 Sum_probs=105.9
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHC--CC
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFV--PD 115 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~--~~ 115 (573)
..|+|||.+++..++. +..+++..++|+|||+++++++....... .+++||+|| ..|+.||.+++.+|. +.
T Consensus 113 ~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~~~--~~~vLilvpt~eL~~Q~~~~l~~~~~~~~ 186 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLENY--EGKVLIIVPTTSLVTQMIDDFVDYRLFPR 186 (501)
T ss_pred CCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHHHHHHHHHHHhccccc
Confidence 4799999999865443 56689999999999999877665544432 248999999 789999999999875 32
Q ss_pred ceE-EeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhc
Q psy13010 116 FKV-VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF 194 (573)
Q Consensus 116 ~~v-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l 194 (573)
..+ .++.|.... .+.+|+|+|++.+.+....+. -.+++||+||+|++.... ....+..+
T Consensus 187 ~~~~~i~~g~~~~-----------------~~~~I~VaT~qsl~~~~~~~~-~~~~~iIvDEaH~~~~~~--~~~il~~~ 246 (501)
T PHA02558 187 EAMHKIYSGTAKD-----------------TDAPIVVSTWQSAVKQPKEWF-DQFGMVIVDECHLFTGKS--LTSIITKL 246 (501)
T ss_pred cceeEEecCcccC-----------------CCCCEEEeeHHHHhhchhhhc-cccCEEEEEchhcccchh--HHHHHHhh
Confidence 333 334443211 346899999999876544332 378999999999997542 33445555
Q ss_pred -ccCcEEEEeccCCCCC
Q psy13010 195 -SCRNRLLLSGTPIQNS 210 (573)
Q Consensus 195 -~~~~~~lLTgTP~~n~ 210 (573)
.++++++|||||....
T Consensus 247 ~~~~~~lGLTATp~~~~ 263 (501)
T PHA02558 247 DNCKFKFGLTGSLRDGK 263 (501)
T ss_pred hccceEEEEeccCCCcc
Confidence 5778999999996543
No 27
>KOG1123|consensus
Probab=99.83 E-value=3.8e-20 Score=182.23 Aligned_cols=197 Identities=19% Similarity=0.354 Sum_probs=141.8
Q ss_pred hhHHHHHHHHHHhhccCCCCCCCCCccCCCCchhh------hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHH
Q psy13010 4 VRHAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFR------GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSI 77 (573)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~------~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~i 77 (573)
.|..||+-++|=-......-..++..+....+.+. .+++|||...+..|-..- ..+.|||..+.|.|||++.+
T Consensus 260 ~~e~vE~vkkRCieidyPlLeEYDFRND~~npdl~idLKPst~iRpYQEksL~KMFGNg-RARSGiIVLPCGAGKtLVGv 338 (776)
T KOG1123|consen 260 KQESVETVKKRCIEIDYPLLEEYDFRNDNVNPDLDIDLKPSTQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKTLVGV 338 (776)
T ss_pred cHHHHHHHHHhhhccCchhhhhhccccCCCCCCCCcCcCcccccCchHHHHHHHHhCCC-cccCceEEEecCCCCceeee
Confidence 46788888888887777777777777766665553 379999999998764321 23356888999999999887
Q ss_pred HHHHHHhhhcCCCCCEEEEcCccc-HHHHHHHHHHHCC--CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeeh
Q psy13010 78 AFLCHIAETYDVWGPFLIISPAST-LHNWQQEMERFVP--DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSY 154 (573)
Q Consensus 78 a~~~~~~~~~~~~~~~LIV~P~~l-~~qW~~el~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy 154 (573)
..+..+. +.+||+|..++ ++||+.++..|.. +..+..+....+++ ......|+|+||
T Consensus 339 TAa~tik------K~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~--------------~~~~~gvvvsTY 398 (776)
T KOG1123|consen 339 TAACTIK------KSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKER--------------FPSGAGVVVTTY 398 (776)
T ss_pred eeeeeec------ccEEEEecCccCHHHHHHHHHhhcccCccceEEeecccccc--------------CCCCCcEEEEee
Confidence 6665443 47899999555 6799999999973 35566666554432 226677999999
Q ss_pred HhHHh----------hHhhhhccCccEEEEcccccccCcchHHHHHHHhc-ccCcEEEEeccCCCCCHHHHHHHHHhh-C
Q psy13010 155 QLVVS----------DFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF-SCRNRLLLSGTPIQNSMAELWALLHFI-M 222 (573)
Q Consensus 155 ~~~~~----------~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l-~~~~~~lLTgTP~~n~~~el~~ll~~L-~ 222 (573)
+++.. -.+.+....|+++++||+|.+ .+..++.+..+ ++..+++||||.++.+ |-..=|+|| +
T Consensus 399 sMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv---PA~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIG 473 (776)
T KOG1123|consen 399 SMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV---PAKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIG 473 (776)
T ss_pred ehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc---hHHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeec
Confidence 99853 246777889999999999987 34455555554 6778899999998854 222234555 6
Q ss_pred CCCC
Q psy13010 223 PSMF 226 (573)
Q Consensus 223 ~~~~ 226 (573)
|+++
T Consensus 474 PKlY 477 (776)
T KOG1123|consen 474 PKLY 477 (776)
T ss_pred chhh
Confidence 6554
No 28
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.71 E-value=1.4e-16 Score=147.48 Aligned_cols=151 Identities=26% Similarity=0.407 Sum_probs=109.9
Q ss_pred ccHHHHHHHHHHHHHHHhCC---CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCC
Q psy13010 40 NLKHYQLKGMNWLANLYDQG---INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPD 115 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~---~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~ 115 (573)
.|+|||.+++.-+.+.+... ..+++..++|+|||+++++++..+.. ++||||| .+++.||.+++..+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 59999999999888877654 77899999999999999988888876 7899999 58899999999877755
Q ss_pred ceEEeecC--------------ChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh-------------hhccC
Q psy13010 116 FKVVPYWG--------------SPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY-------------FNRIK 168 (573)
Q Consensus 116 ~~v~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~-------------l~~~~ 168 (573)
........ ....... .......+++++++..+...... .....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKS----------ESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNK 146 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHH----------HHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGS
T ss_pred hhhhccccccccccccccccccccccccc----------ccccccccchhhHHHHHHhhcccccccccchhhhhhhcccc
Confidence 33332111 0000100 02236778999999999876432 23357
Q ss_pred ccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCCC
Q psy13010 169 WQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208 (573)
Q Consensus 169 ~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~ 208 (573)
+++||+||+|++.+... ++.+....+.++++|||||.+
T Consensus 147 ~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 147 FDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPFR 184 (184)
T ss_dssp ESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S-
T ss_pred CCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCccC
Confidence 89999999999866542 666666788899999999964
No 29
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.66 E-value=1.1e-14 Score=165.78 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=106.7
Q ss_pred hccHHHHHHHHHHHHHHHhC-CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCc
Q psy13010 39 GNLKHYQLKGMNWLANLYDQ-GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDF 116 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~-~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~ 116 (573)
..|++||.+||..+.+.+.. ..++++.+.+|+|||.++++++..+..... .+++|+++| ..|+.||.++|..+.+..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~-~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKR-FRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCc-cCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 46999999999877766653 457899999999999999999888876533 468999999 888999999998874321
Q ss_pred e-EE--eecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh-------hhhccCccEEEEcccccccCcc--
Q psy13010 117 K-VV--PYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK-------YFNRIKWQYLILDEAQAIKSSS-- 184 (573)
Q Consensus 117 ~-v~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~-------~l~~~~~~~vIiDE~h~~kn~~-- 184 (573)
. .+ ++ +... +... .......|+++|+.++.+... .+.-..|++||+||||+.....
T Consensus 491 ~~~~~~i~-~i~~----L~~~-------~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~ 558 (1123)
T PRK11448 491 DQTFASIY-DIKG----LEDK-------FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKE 558 (1123)
T ss_pred ccchhhhh-chhh----hhhh-------cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccc
Confidence 1 11 11 1110 1100 112456899999999866431 1223468999999999952100
Q ss_pred --------------hHHHHHHHhcccCcEEEEeccCCCC
Q psy13010 185 --------------SMRWKLLLGFSCRNRLLLSGTPIQN 209 (573)
Q Consensus 185 --------------s~~~~~~~~l~~~~~~lLTgTP~~n 209 (573)
...++.+...-...+++|||||..+
T Consensus 559 ~~~~~~~~~~~~~~~~~yr~iL~yFdA~~IGLTATP~r~ 597 (1123)
T PRK11448 559 MSEGELQFRDQLDYVSKYRRVLDYFDAVKIGLTATPALH 597 (1123)
T ss_pred cccchhccchhhhHHHHHHHHHhhcCccEEEEecCCccc
Confidence 1233333332124789999999854
No 30
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.64 E-value=8.1e-14 Score=147.96 Aligned_cols=153 Identities=18% Similarity=0.246 Sum_probs=103.3
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHH-HHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHC---C
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSI-AFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFV---P 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~i-a~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~---~ 114 (573)
.+.|+|.+++..+.. +...++..++|+|||...+ .++..+... .....+||+|| ..|..||.+++.++. +
T Consensus 26 ~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~-~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 100 (460)
T PRK11776 26 EMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVK-RFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (460)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhc-cCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 588999999976643 7788999999999998753 444444322 22235899999 778889999888764 4
Q ss_pred CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCcc--hHHHHH
Q psy13010 115 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSSS--SMRWKL 190 (573)
Q Consensus 115 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~~--s~~~~~ 190 (573)
+.++..+.|........... ....+|+++|++.+..... .+.-..+++||+||+|++.+.. ......
T Consensus 101 ~~~v~~~~Gg~~~~~~~~~l---------~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i 171 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQIDSL---------EHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAI 171 (460)
T ss_pred CcEEEEEECCCChHHHHHHh---------cCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHH
Confidence 67887777765443333222 1466899999998865432 2223367899999999976543 222233
Q ss_pred HHhcc-cCcEEEEeccC
Q psy13010 191 LLGFS-CRNRLLLSGTP 206 (573)
Q Consensus 191 ~~~l~-~~~~~lLTgTP 206 (573)
+..+. ....+++|||+
T Consensus 172 ~~~~~~~~q~ll~SAT~ 188 (460)
T PRK11776 172 IRQAPARRQTLLFSATY 188 (460)
T ss_pred HHhCCcccEEEEEEecC
Confidence 33332 34578999996
No 31
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=9.9e-14 Score=147.20 Aligned_cols=156 Identities=17% Similarity=0.170 Sum_probs=101.6
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKV 118 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v 118 (573)
.++|+|.+++..++. +..+++..++|+|||+..+.- .+.. .+.+|||+| ..|+.+|...+... +...
T Consensus 11 ~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp--~l~~----~~~~lVi~P~~~L~~dq~~~l~~~--gi~~ 78 (470)
T TIGR00614 11 SFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLP--ALCS----DGITLVISPLISLMEDQVLQLKAS--GIPA 78 (470)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHH--HHHc----CCcEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 699999999976544 668899999999999864322 2222 257899999 77888899998765 3445
Q ss_pred EeecCChhHH--HHHHHHhhhcccccCCCCceEEEeehHhHHhhH---hhh-hccCccEEEEcccccccCcc---hHHHH
Q psy13010 119 VPYWGSPQER--KILRQFWDMKNLHTKDASFHVVITSYQLVVSDF---KYF-NRIKWQYLILDEAQAIKSSS---SMRWK 189 (573)
Q Consensus 119 ~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~---~~l-~~~~~~~vIiDE~h~~kn~~---s~~~~ 189 (573)
..+.+..... ..+... . ..+.++++++|.+.+.... ..+ ...+..+||+||+|.+...+ ...+.
T Consensus 79 ~~l~~~~~~~~~~~i~~~--~-----~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~ 151 (470)
T TIGR00614 79 TFLNSSQSKEQQKNVLTD--L-----KDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYK 151 (470)
T ss_pred EEEeCCCCHHHHHHHHHH--H-----hcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHH
Confidence 4455443322 212111 1 2256889999999886533 233 34578999999999985422 11222
Q ss_pred HH----HhcccCcEEEEeccCCCCCHHHH
Q psy13010 190 LL----LGFSCRNRLLLSGTPIQNSMAEL 214 (573)
Q Consensus 190 ~~----~~l~~~~~~lLTgTP~~n~~~el 214 (573)
.+ ..+.....++|||||......++
T Consensus 152 ~l~~l~~~~~~~~~l~lTAT~~~~~~~di 180 (470)
T TIGR00614 152 ALGSLKQKFPNVPIMALTATASPSVREDI 180 (470)
T ss_pred HHHHHHHHcCCCceEEEecCCCHHHHHHH
Confidence 22 22345678999999866444443
No 32
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.62 E-value=1.5e-13 Score=150.83 Aligned_cols=157 Identities=16% Similarity=0.135 Sum_probs=108.7
Q ss_pred hhccHHHHHHHHHHHHHHHhC------CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHH
Q psy13010 38 RGNLKHYQLKGMNWLANLYDQ------GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEME 110 (573)
Q Consensus 38 ~~~L~~~Q~~~v~~l~~~~~~------~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~ 110 (573)
+...++||..||+.+.+.... ..+|+|.+.+|+|||++++.++..+....+ ..++|||+| ..|..||.++|.
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~-~~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLK-NPKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcC-CCeEEEEECcHHHHHHHHHHHH
Confidence 446899999999988877654 357899999999999999998888775433 357899999 778899999999
Q ss_pred HHCCCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh-hhcc---Cc-cEEEEcccccccCcch
Q psy13010 111 RFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY-FNRI---KW-QYLILDEAQAIKSSSS 185 (573)
Q Consensus 111 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~-l~~~---~~-~~vIiDE~h~~kn~~s 185 (573)
.+.++. +. -.++ ...+.... ...+..|+++|..++...... +..+ .. .+||+||||+....
T Consensus 315 ~~~~~~-~~-~~~s---~~~L~~~l-------~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~-- 380 (667)
T TIGR00348 315 SLQKDC-AE-RIES---IAELKRLL-------EKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG-- 380 (667)
T ss_pred hhCCCC-Cc-ccCC---HHHHHHHH-------hCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch--
Confidence 986431 11 1111 12222110 113467999999999864322 2222 12 38999999986432
Q ss_pred HHHHHHH-hcccCcEEEEeccCCCC
Q psy13010 186 MRWKLLL-GFSCRNRLLLSGTPIQN 209 (573)
Q Consensus 186 ~~~~~~~-~l~~~~~~lLTgTP~~n 209 (573)
...+.++ .+...++++|||||...
T Consensus 381 ~~~~~l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 381 ELAKNLKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred HHHHHHHhhCCCCcEEEEeCCCccc
Confidence 2234453 45677899999999874
No 33
>PTZ00110 helicase; Provisional
Probab=99.62 E-value=2.2e-13 Score=146.42 Aligned_cols=169 Identities=18% Similarity=0.199 Sum_probs=105.7
Q ss_pred CCCCccCCCCchhhh--------ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHH-HHHHHHhhhc----CCCC
Q psy13010 25 FSTEVERPQPGLFRG--------NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSI-AFLCHIAETY----DVWG 91 (573)
Q Consensus 25 ~~~~~~~~~p~~l~~--------~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~i-a~~~~~~~~~----~~~~ 91 (573)
.........|+.+.. .+.|+|..++-.++ .+...|+..++|+|||+..+ .++..+.... ....
T Consensus 129 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l----~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp 204 (545)
T PTZ00110 129 VVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIAL----SGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGP 204 (545)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh----cCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCc
Confidence 334444556665532 58899999986543 47788999999999999753 3333333221 1112
Q ss_pred CEEEEcC-cccHHHHHHHHHHHCCC--ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhc
Q psy13010 92 PFLIISP-ASTLHNWQQEMERFVPD--FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNR 166 (573)
Q Consensus 92 ~~LIV~P-~~l~~qW~~el~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~ 166 (573)
.+|||+| ..|..|+.+++.++... .++.+..|........... ....+|+|+|...+..... .+.-
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l---------~~~~~IlVaTPgrL~d~l~~~~~~l 275 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYAL---------RRGVEILIACPGRLIDFLESNVTNL 275 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHH---------HcCCCEEEECHHHHHHHHHcCCCCh
Confidence 4799999 77888999999988643 4554444443322222221 1346899999988765432 1222
Q ss_pred cCccEEEEcccccccCcc--hHHHHHHHhcc-cCcEEEEeccC
Q psy13010 167 IKWQYLILDEAQAIKSSS--SMRWKLLLGFS-CRNRLLLSGTP 206 (573)
Q Consensus 167 ~~~~~vIiDE~h~~kn~~--s~~~~~~~~l~-~~~~~lLTgTP 206 (573)
.+..+||+||+|++.... ....+.+..+. ....+++|||.
T Consensus 276 ~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~ 318 (545)
T PTZ00110 276 RRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATW 318 (545)
T ss_pred hhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 357899999999986543 22333334443 34578899994
No 34
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.61 E-value=2.6e-13 Score=143.62 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=101.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHH-HHHHhhhcC-----CCCCEEEEcC-cccHHHHHHHHHHH
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAF-LCHIAETYD-----VWGPFLIISP-ASTLHNWQQEMERF 112 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~-~~~~~~~~~-----~~~~~LIV~P-~~l~~qW~~el~~~ 112 (573)
.+.|+|.+++..+++ +...|+..++|+|||+..+.. +..+..... ....+|||+| ..|..||.+++..+
T Consensus 23 ~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 23 EPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 688999999976543 677899999999999986543 333332211 1125899999 78888999999887
Q ss_pred CC--CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCcc--hH
Q psy13010 113 VP--DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSSS--SM 186 (573)
Q Consensus 113 ~~--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~~--s~ 186 (573)
.. +.++..+.|........... ...++|+|+|.+.+..... .+.-...++||+||+|++.... ..
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~~~l---------~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~ 169 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQMMKL---------RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHD 169 (456)
T ss_pred hccCCCEEEEEECCcCHHHHHHHH---------cCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHH
Confidence 54 35555555543332222211 1567899999998865432 2223467899999999986533 12
Q ss_pred HHHHHHhccc-CcEEEEeccCC
Q psy13010 187 RWKLLLGFSC-RNRLLLSGTPI 207 (573)
Q Consensus 187 ~~~~~~~l~~-~~~~lLTgTP~ 207 (573)
....+..+.. ...+++|||+-
T Consensus 170 i~~il~~l~~~~q~l~~SAT~~ 191 (456)
T PRK10590 170 IRRVLAKLPAKRQNLLFSATFS 191 (456)
T ss_pred HHHHHHhCCccCeEEEEeCCCc
Confidence 2223333433 34789999953
No 35
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.60 E-value=2.6e-13 Score=148.53 Aligned_cols=158 Identities=17% Similarity=0.200 Sum_probs=109.3
Q ss_pred hccHHHHHHHHHHHHHHHhCC--CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC-
Q psy13010 39 GNLKHYQLKGMNWLANLYDQG--INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP- 114 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~--~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~- 114 (573)
-+|.++|..++..+...+... ...++..++|+|||+.++..+......+ ..++|++| ..|..||.+.+.++++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g---~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG---YQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC---CcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 379999999999887655432 3569999999999998865554444432 47899999 6777899999999886
Q ss_pred -CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHh
Q psy13010 115 -DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLG 193 (573)
Q Consensus 115 -~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~ 193 (573)
+.++.++.|+............ ...+..+|+|.|+..+.... .-.+.++||+||+|++.-. ++......
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~~-----i~~g~~~IiVgT~~ll~~~~---~~~~l~lvVIDEaH~fg~~--qr~~l~~~ 380 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLET-----IASGQIHLVVGTHALIQEKV---EFKRLALVIIDEQHRFGVE--QRKKLREK 380 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHHH-----HhCCCCCEEEecHHHHhccc---cccccceEEEechhhccHH--HHHHHHHh
Confidence 4788888886443322111111 12256789999998875432 2235789999999998432 22222222
Q ss_pred cc---cCcEEEEeccCCCC
Q psy13010 194 FS---CRNRLLLSGTPIQN 209 (573)
Q Consensus 194 l~---~~~~~lLTgTP~~n 209 (573)
.. ..+.+++||||.+.
T Consensus 381 ~~~~~~~~~l~~SATp~pr 399 (630)
T TIGR00643 381 GQGGFTPHVLVMSATPIPR 399 (630)
T ss_pred cccCCCCCEEEEeCCCCcH
Confidence 23 56789999999874
No 36
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.59 E-value=5.7e-13 Score=140.58 Aligned_cols=156 Identities=17% Similarity=0.139 Sum_probs=101.3
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHH-HHHHHhhh---cCCCCCEEEEcC-cccHHHHHHHHHHHCC
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIA-FLCHIAET---YDVWGPFLIISP-ASTLHNWQQEMERFVP 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia-~~~~~~~~---~~~~~~~LIV~P-~~l~~qW~~el~~~~~ 114 (573)
.++++|.+++..+++ +...++...+|+|||+..+. ++..+... ......+||++| ..|+.|+.+.+..+..
T Consensus 23 ~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~ 98 (434)
T PRK11192 23 RPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAK 98 (434)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHc
Confidence 578999999976543 67789999999999987643 33333321 111246899999 6688888888777653
Q ss_pred --CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCcc--hHHH
Q psy13010 115 --DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSSS--SMRW 188 (573)
Q Consensus 115 --~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~~--s~~~ 188 (573)
+.++..+.|........... ...++|+|+|.+.+..... .+.....++||+||+|++.... ....
T Consensus 99 ~~~~~v~~~~gg~~~~~~~~~l---------~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~ 169 (434)
T PRK11192 99 HTHLDIATITGGVAYMNHAEVF---------SENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIE 169 (434)
T ss_pred cCCcEEEEEECCCCHHHHHHHh---------cCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHH
Confidence 46777777764332222111 1456899999988865432 2333457889999999986533 1222
Q ss_pred HHHHhcc-cCcEEEEeccCCC
Q psy13010 189 KLLLGFS-CRNRLLLSGTPIQ 208 (573)
Q Consensus 189 ~~~~~l~-~~~~~lLTgTP~~ 208 (573)
.....+. ....+++|||+-.
T Consensus 170 ~i~~~~~~~~q~~~~SAT~~~ 190 (434)
T PRK11192 170 TIAAETRWRKQTLLFSATLEG 190 (434)
T ss_pred HHHHhCccccEEEEEEeecCH
Confidence 2222222 3456999999753
No 37
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.59 E-value=3.3e-13 Score=147.44 Aligned_cols=159 Identities=13% Similarity=0.149 Sum_probs=104.4
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKV 118 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v 118 (573)
.++|.|.+++..+++ +...++..++|.|||+..... .+.. .+.++||+| .+++.++...+... +..+
T Consensus 13 ~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lp--al~~----~g~~lVisPl~sL~~dq~~~l~~~--gi~~ 80 (591)
T TIGR01389 13 DFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVP--ALLL----KGLTVVISPLISLMKDQVDQLRAA--GVAA 80 (591)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHH--HHHc----CCcEEEEcCCHHHHHHHHHHHHHc--CCcE
Confidence 699999999976654 678899999999999876432 2222 257899999 77888999998875 3455
Q ss_pred EeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhh--HhhhhccCccEEEEcccccccCcc---hHHHHHH--
Q psy13010 119 VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD--FKYFNRIKWQYLILDEAQAIKSSS---SMRWKLL-- 191 (573)
Q Consensus 119 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~--~~~l~~~~~~~vIiDE~h~~kn~~---s~~~~~~-- 191 (573)
..+.++....+....... -..+..++++++.+.+... ...+......+||+||+|.+..-+ ...+..+
T Consensus 81 ~~~~s~~~~~~~~~~~~~-----l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~ 155 (591)
T TIGR01389 81 AYLNSTLSAKEQQDIEKA-----LVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGS 155 (591)
T ss_pred EEEeCCCCHHHHHHHHHH-----HhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHH
Confidence 555554322221111111 1125678999999988543 345556688999999999985321 1122222
Q ss_pred --HhcccCcEEEEeccCCCCCHHHHH
Q psy13010 192 --LGFSCRNRLLLSGTPIQNSMAELW 215 (573)
Q Consensus 192 --~~l~~~~~~lLTgTP~~n~~~el~ 215 (573)
..+.....+++|||+......++.
T Consensus 156 l~~~~~~~~vi~lTAT~~~~~~~~i~ 181 (591)
T TIGR01389 156 LAERFPQVPRIALTATADAETRQDIR 181 (591)
T ss_pred HHHhCCCCCEEEEEeCCCHHHHHHHH
Confidence 233345589999998765544443
No 38
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.59 E-value=4.2e-13 Score=143.87 Aligned_cols=171 Identities=12% Similarity=0.113 Sum_probs=108.7
Q ss_pred CCCCCccCCCCchhhh--------ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHH-HHHHHhhh------cC
Q psy13010 24 SFSTEVERPQPGLFRG--------NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIA-FLCHIAET------YD 88 (573)
Q Consensus 24 ~~~~~~~~~~p~~l~~--------~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia-~~~~~~~~------~~ 88 (573)
++.......+|+.+.. .+.|+|..++..++ .+...++..++|+|||+..+. ++..+... ..
T Consensus 119 pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il----~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~ 194 (518)
T PLN00206 119 PILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAAL----SGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQ 194 (518)
T ss_pred hhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh----cCCCEEEEecCCCCccHHHHHHHHHHHHhhcccccccc
Confidence 3444444556655532 57899999987654 477889999999999987643 33333221 11
Q ss_pred CCCCEEEEcC-cccHHHHHHHHHHHCCC--ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--h
Q psy13010 89 VWGPFLIISP-ASTLHNWQQEMERFVPD--FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--Y 163 (573)
Q Consensus 89 ~~~~~LIV~P-~~l~~qW~~el~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~ 163 (573)
....+|||+| ..|..|+.+++..+... .++..+.|.......+... ...++|+|+|.+.+..... .
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l---------~~~~~IiV~TPgrL~~~l~~~~ 265 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRI---------QQGVELIVGTPGRLIDLLSKHD 265 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHh---------cCCCCEEEECHHHHHHHHHcCC
Confidence 2236899999 77888888888777543 4444444433322222221 1456899999998755432 2
Q ss_pred hhccCccEEEEcccccccCcc--hHHHHHHHhcccCcEEEEeccCC
Q psy13010 164 FNRIKWQYLILDEAQAIKSSS--SMRWKLLLGFSCRNRLLLSGTPI 207 (573)
Q Consensus 164 l~~~~~~~vIiDE~h~~kn~~--s~~~~~~~~l~~~~~~lLTgTP~ 207 (573)
+.-.+..+||+||+|++...+ ....+.+..+.....+++|||.-
T Consensus 266 ~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~ 311 (518)
T PLN00206 266 IELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVS 311 (518)
T ss_pred ccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCC
Confidence 223356899999999985532 33344445556677899999953
No 39
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.59 E-value=6.2e-13 Score=144.45 Aligned_cols=153 Identities=19% Similarity=0.210 Sum_probs=102.4
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHH-HHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHC---C
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSI-AFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFV---P 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~i-a~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~---~ 114 (573)
.+.|+|.+++..++. +...|+..++|+|||+..+ .++..+... .....+||+|| ..|..||.+++.++. +
T Consensus 28 ~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~-~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 28 KPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPE-LKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhc-cCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 688999999976643 6778999999999998763 344444332 22236899999 778889998887654 5
Q ss_pred CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCcc--hHHHHH
Q psy13010 115 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSSS--SMRWKL 190 (573)
Q Consensus 115 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~~--s~~~~~ 190 (573)
+..++.++|.......+... ....+|+|+|...+..... .+.-....+||+||+|.+.+.. ......
T Consensus 103 ~i~v~~~~gG~~~~~q~~~l---------~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~I 173 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRAL---------RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETI 173 (629)
T ss_pred CceEEEEECCcCHHHHHHHh---------cCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHH
Confidence 67777776664433322221 1456899999998865432 2223356789999999875543 223334
Q ss_pred HHhcc-cCcEEEEeccC
Q psy13010 191 LLGFS-CRNRLLLSGTP 206 (573)
Q Consensus 191 ~~~l~-~~~~~lLTgTP 206 (573)
+..+. ....+++|||.
T Consensus 174 l~~lp~~~q~llfSAT~ 190 (629)
T PRK11634 174 MAQIPEGHQTALFSATM 190 (629)
T ss_pred HHhCCCCCeEEEEEccC
Confidence 44443 34568899995
No 40
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.59 E-value=6.3e-13 Score=139.60 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=99.4
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHH-HHHHhhhcC------CCCCEEEEcC-cccHHHHHHHHHH
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAF-LCHIAETYD------VWGPFLIISP-ASTLHNWQQEMER 111 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~-~~~~~~~~~------~~~~~LIV~P-~~l~~qW~~el~~ 111 (573)
.+.|.|.+++..++ .+...++..++|+|||+..+.. +..+..... ....+||++| ..|..||.+++..
T Consensus 30 ~pt~iQ~~aip~il----~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLTL----AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHHh----CCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 57899999987554 3778899999999999976433 333332211 1135899999 7788899888877
Q ss_pred HCC--CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCcc--h
Q psy13010 112 FVP--DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSSS--S 185 (573)
Q Consensus 112 ~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~~--s 185 (573)
+.. +.++..+.|........... ...++|+|+|.+.+..... .+.-....++|+||+|++.+.. .
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~~l---------~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~ 176 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLKVL---------ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIK 176 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHHHh---------cCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHH
Confidence 653 46776666654333222221 1346899999998865432 2333467899999999986533 2
Q ss_pred HHHHHHHhcc---cCcEEEEeccC
Q psy13010 186 MRWKLLLGFS---CRNRLLLSGTP 206 (573)
Q Consensus 186 ~~~~~~~~l~---~~~~~lLTgTP 206 (573)
.....+..+. ....+++|||.
T Consensus 177 ~i~~i~~~~~~~~~~~~~l~SAT~ 200 (423)
T PRK04837 177 DIRWLFRRMPPANQRLNMLFSATL 200 (423)
T ss_pred HHHHHHHhCCCccceeEEEEeccC
Confidence 2222233332 22357888885
No 41
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.58 E-value=8e-13 Score=140.78 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=100.9
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHH-HHHHHHhhhcCC------CCCEEEEcC-cccHHHHHHHHHH
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSI-AFLCHIAETYDV------WGPFLIISP-ASTLHNWQQEMER 111 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~i-a~~~~~~~~~~~------~~~~LIV~P-~~l~~qW~~el~~ 111 (573)
.+++||.+++..++ .+...|+...+|+|||+..+ .++..+...... ...+|||+| ..|..||.+.+..
T Consensus 109 ~~~~iQ~~ai~~~~----~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 109 YCTPIQAQVLGYTL----AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 58999999997554 47788999999999998764 334444332111 236899999 8888899998887
Q ss_pred HCC--CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh--hhccCccEEEEcccccccCcch--
Q psy13010 112 FVP--DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIKSSSS-- 185 (573)
Q Consensus 112 ~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~--l~~~~~~~vIiDE~h~~kn~~s-- 185 (573)
+.. +..+..+.|........+.. ....++|+|+|.+.+...... +.-....+||+||+|.+.+..-
T Consensus 185 l~~~~~~~v~~~~gg~~~~~~~~~~--------~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~ 256 (475)
T PRK01297 185 LTKYTGLNVMTFVGGMDFDKQLKQL--------EARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIP 256 (475)
T ss_pred hhccCCCEEEEEEccCChHHHHHHH--------hCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHH
Confidence 753 46677777754333222221 114568999999998543321 1223567999999999865431
Q ss_pred HHHHHHHhcc---cCcEEEEeccC
Q psy13010 186 MRWKLLLGFS---CRNRLLLSGTP 206 (573)
Q Consensus 186 ~~~~~~~~l~---~~~~~lLTgTP 206 (573)
...+.+..+. ....+++|||.
T Consensus 257 ~l~~i~~~~~~~~~~q~i~~SAT~ 280 (475)
T PRK01297 257 QVRQIIRQTPRKEERQTLLFSATF 280 (475)
T ss_pred HHHHHHHhCCCCCCceEEEEEeec
Confidence 1222233332 23578899985
No 42
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.58 E-value=5.3e-13 Score=144.07 Aligned_cols=154 Identities=18% Similarity=0.145 Sum_probs=100.4
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHH-HHHHhhhc------CCCCCEEEEcC-cccHHHHHHHHHH
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAF-LCHIAETY------DVWGPFLIISP-ASTLHNWQQEMER 111 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~-~~~~~~~~------~~~~~~LIV~P-~~l~~qW~~el~~ 111 (573)
.+.|.|..++..++. +...++..++|+|||+..+.. +..+.... .....+|||+| ..|+.|+.+.+.+
T Consensus 31 ~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 31 RCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 689999999976643 778899999999999887543 33333211 11236899999 7788899999988
Q ss_pred HCCC--ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh---hhhccCccEEEEcccccccCcc--
Q psy13010 112 FVPD--FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK---YFNRIKWQYLILDEAQAIKSSS-- 184 (573)
Q Consensus 112 ~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~---~l~~~~~~~vIiDE~h~~kn~~-- 184 (573)
+... .++..+.|........... ...++|+|+|.+.+..... .+.-....+||+||+|.+....
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~~~l---------~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~ 177 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQRELL---------QQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFI 177 (572)
T ss_pred HhccCCceEEEEECCCCHHHHHHHH---------hCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchH
Confidence 8643 5666666654322221111 1357899999998865432 2223356789999999885432
Q ss_pred hHHHHHHHhcc---cCcEEEEeccC
Q psy13010 185 SMRWKLLLGFS---CRNRLLLSGTP 206 (573)
Q Consensus 185 s~~~~~~~~l~---~~~~~lLTgTP 206 (573)
......+..+. ....+++|||.
T Consensus 178 ~~i~~il~~lp~~~~~q~ll~SATl 202 (572)
T PRK04537 178 KDIRFLLRRMPERGTRQTLLFSATL 202 (572)
T ss_pred HHHHHHHHhcccccCceEEEEeCCc
Confidence 22222333332 34578899995
No 43
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.58 E-value=5.9e-13 Score=145.17 Aligned_cols=159 Identities=13% Similarity=0.126 Sum_probs=102.9
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKV 118 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v 118 (573)
.++|+|.+++..++ .+..+++..++|.|||+....- .+... +.+|||+| .+|+.+|.+.+... +...
T Consensus 25 ~~r~~Q~~ai~~il----~g~dvlv~apTGsGKTl~y~lp--al~~~----g~tlVisPl~sL~~dqv~~l~~~--gi~~ 92 (607)
T PRK11057 25 QFRPGQQEIIDAVL----SGRDCLVVMPTGGGKSLCYQIP--ALVLD----GLTLVVSPLISLMKDQVDQLLAN--GVAA 92 (607)
T ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHH--HHHcC----CCEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 69999999997554 3778899999999999865322 22222 57899999 78888899998775 3444
Q ss_pred EeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhh--HhhhhccCccEEEEcccccccCcc---hHHHHHHHh
Q psy13010 119 VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD--FKYFNRIKWQYLILDEAQAIKSSS---SMRWKLLLG 193 (573)
Q Consensus 119 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~--~~~l~~~~~~~vIiDE~h~~kn~~---s~~~~~~~~ 193 (573)
..+.++............. ..+..++++++.+.+... ...+...++.+||+||+|.+...+ ...++.+..
T Consensus 93 ~~~~s~~~~~~~~~~~~~~-----~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~ 167 (607)
T PRK11057 93 ACLNSTQTREQQLEVMAGC-----RTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQ 167 (607)
T ss_pred EEEcCCCCHHHHHHHHHHH-----hCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHH
Confidence 4454443322221111111 125678999999887642 344555678999999999975422 122333333
Q ss_pred c----ccCcEEEEeccCCCCCHHHHH
Q psy13010 194 F----SCRNRLLLSGTPIQNSMAELW 215 (573)
Q Consensus 194 l----~~~~~~lLTgTP~~n~~~el~ 215 (573)
+ .....+++|||+-.....++.
T Consensus 168 l~~~~p~~~~v~lTAT~~~~~~~di~ 193 (607)
T PRK11057 168 LRQRFPTLPFMALTATADDTTRQDIV 193 (607)
T ss_pred HHHhCCCCcEEEEecCCChhHHHHHH
Confidence 3 355689999998765444443
No 44
>KOG0354|consensus
Probab=99.57 E-value=8.8e-13 Score=139.58 Aligned_cols=166 Identities=17% Similarity=0.208 Sum_probs=113.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKV 118 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v 118 (573)
+||+||.+-++-. + +.+.|++.++|+|||.+|+.++....+..+. +++++.+| ..|+.|=...+..++.+-.+
T Consensus 62 ~lR~YQ~eivq~A---L--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~ 135 (746)
T KOG0354|consen 62 ELRNYQEELVQPA---L--GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIPYSV 135 (746)
T ss_pred cccHHHHHHhHHh---h--cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCcccc
Confidence 7999999998743 3 6778999999999999997777666665444 89999999 66777777888777644555
Q ss_pred EeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhcc---CccEEEEcccccccCcc--hHHHHHHHh
Q psy13010 119 VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRI---KWQYLILDEAQAIKSSS--SMRWKLLLG 193 (573)
Q Consensus 119 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~---~~~~vIiDE~h~~kn~~--s~~~~~~~~ 193 (573)
....|+...+...... ....+|++.|...+.++...-..- .|-++||||||+..... +..-+....
T Consensus 136 T~~l~~~~~~~~r~~i---------~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~ 206 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRGEI---------VASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLD 206 (746)
T ss_pred eeeccCccCCCchhhh---------hcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHH
Confidence 5555542222211121 145679999999999876544433 48999999999974422 223223333
Q ss_pred c--ccCcEEEEeccCCCCCHHHHHHHHHhh
Q psy13010 194 F--SCRNRLLLSGTPIQNSMAELWALLHFI 221 (573)
Q Consensus 194 l--~~~~~~lLTgTP~~n~~~el~~ll~~L 221 (573)
+ .....++|||||- ++.....+.+.=|
T Consensus 207 ~k~~~~qILgLTASpG-~~~~~v~~~I~~L 235 (746)
T KOG0354|consen 207 LKNQGNQILGLTASPG-SKLEQVQNVIDNL 235 (746)
T ss_pred hhhccccEEEEecCCC-ccHHHHHHHHHhh
Confidence 3 2347899999999 5666555555433
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.57 E-value=3.6e-13 Score=150.77 Aligned_cols=154 Identities=16% Similarity=0.185 Sum_probs=104.5
Q ss_pred ccHHHHHHHHHHHHHHHhCC--CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCC-
Q psy13010 40 NLKHYQLKGMNWLANLYDQG--INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPD- 115 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~--~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~- 115 (573)
.+.|.|..++..+.+-+..+ ...+++.++|+|||.+++..+......+ ..++|++| ..|..|..+.|.+++..
T Consensus 451 ~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT~~LA~Q~~~~f~~~~~~~ 527 (926)
T TIGR00580 451 EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPTTLLAQQHFETFKERFANF 527 (926)
T ss_pred CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCcHHHHHHHHHHHHHHhccC
Confidence 68999999999887655443 4569999999999998864443333332 47899999 77778999999887754
Q ss_pred -ceEEeecCChh--HHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHH
Q psy13010 116 -FKVVPYWGSPQ--ERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLL 192 (573)
Q Consensus 116 -~~v~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~ 192 (573)
.++.++.|... +...+... . ..+..+|+|.|+..+... +.-.+.++||+||+|++.. .....++
T Consensus 528 ~i~v~~Lsg~~~~~e~~~~~~~--l-----~~g~~dIVIGTp~ll~~~---v~f~~L~llVIDEahrfgv---~~~~~L~ 594 (926)
T TIGR00580 528 PVTIELLSRFRSAKEQNEILKE--L-----ASGKIDILIGTHKLLQKD---VKFKDLGLLIIDEEQRFGV---KQKEKLK 594 (926)
T ss_pred CcEEEEEeccccHHHHHHHHHH--H-----HcCCceEEEchHHHhhCC---CCcccCCEEEeecccccch---hHHHHHH
Confidence 45556665432 22222111 0 115678999999766432 1223568999999999843 2344455
Q ss_pred hcc-cCcEEEEeccCCCC
Q psy13010 193 GFS-CRNRLLLSGTPIQN 209 (573)
Q Consensus 193 ~l~-~~~~~lLTgTP~~n 209 (573)
.+. ....+++||||++.
T Consensus 595 ~~~~~~~vL~~SATpipr 612 (926)
T TIGR00580 595 ELRTSVDVLTLSATPIPR 612 (926)
T ss_pred hcCCCCCEEEEecCCCHH
Confidence 553 45789999999764
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.56 E-value=1.2e-12 Score=144.50 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=108.7
Q ss_pred hccHHHHHHHHHHHHHHHhCC--CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCC
Q psy13010 39 GNLKHYQLKGMNWLANLYDQG--INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPD 115 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~--~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~ 115 (573)
-.|.+.|..++.-+..-+..+ ...++..++|+|||+.++..+......+ ..+||++| ..|..|+.+.+.++++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g---~q~lilaPT~~LA~Q~~~~l~~l~~~ 336 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG---YQAALMAPTEILAEQHYENLKKLLEP 336 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 379999999998777655432 3569999999999998875554444332 37899999 77778999999998764
Q ss_pred --ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHh
Q psy13010 116 --FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLG 193 (573)
Q Consensus 116 --~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~ 193 (573)
.++.++.|+......-...... ..+..+|+|.|+..+.... .+ .+.++||+||+|++.- .....+..
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~~~l-----~~g~~~IvVgT~~ll~~~v-~~--~~l~lvVIDE~Hrfg~---~qr~~l~~ 405 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREILEAI-----ASGEADIVIGTHALIQDDV-EF--HNLGLVIIDEQHRFGV---EQRLALRE 405 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHHHHH-----hCCCCCEEEchHHHhcccc-hh--cccceEEEechhhhhH---HHHHHHHh
Confidence 7788888875432221111111 1256899999998775421 12 3578999999999842 23333443
Q ss_pred c-ccCcEEEEeccCCCC
Q psy13010 194 F-SCRNRLLLSGTPIQN 209 (573)
Q Consensus 194 l-~~~~~~lLTgTP~~n 209 (573)
. .....+++||||.+.
T Consensus 406 ~~~~~~iL~~SATp~pr 422 (681)
T PRK10917 406 KGENPHVLVMTATPIPR 422 (681)
T ss_pred cCCCCCEEEEeCCCCHH
Confidence 3 346789999999763
No 47
>PTZ00424 helicase 45; Provisional
Probab=99.56 E-value=1.9e-12 Score=135.40 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=100.6
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC--Cc
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP--DF 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~--~~ 116 (573)
.+.|+|..++..+.+ +...++..++|+|||..++..+............+|||+| ..|+.|+.+.+..... ..
T Consensus 50 ~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 50 KPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 589999999976543 7778999999999998765433333322222346899999 7777888887776653 34
Q ss_pred eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCcc--hHHHHHHH
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSSS--SMRWKLLL 192 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~~--s~~~~~~~ 192 (573)
.+..+.|........... ....+|+|+|.+.+..... .+.-.++++||+||+|++.... ......+.
T Consensus 126 ~~~~~~g~~~~~~~~~~~---------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~ 196 (401)
T PTZ00424 126 RCHACVGGTVVRDDINKL---------KAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFK 196 (401)
T ss_pred eEEEEECCcCHHHHHHHH---------cCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHh
Confidence 444455554333332221 1345899999988764332 2233467899999999975432 33344444
Q ss_pred hcc-cCcEEEEeccCC
Q psy13010 193 GFS-CRNRLLLSGTPI 207 (573)
Q Consensus 193 ~l~-~~~~~lLTgTP~ 207 (573)
.+. ....+++|||+-
T Consensus 197 ~~~~~~~~i~~SAT~~ 212 (401)
T PTZ00424 197 KLPPDVQVALFSATMP 212 (401)
T ss_pred hCCCCcEEEEEEecCC
Confidence 443 346899999963
No 48
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.55 E-value=1.4e-13 Score=128.74 Aligned_cols=159 Identities=23% Similarity=0.299 Sum_probs=113.1
Q ss_pred hccHHHHHHHHHHHHHHHhCC-CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCC-
Q psy13010 39 GNLKHYQLKGMNWLANLYDQG-INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPD- 115 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~-~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~- 115 (573)
..++++|.+++..+.. . ..+++..++|+|||.+++.++........ .+++||++| ..+..+|..++..+++.
T Consensus 7 ~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 7 EPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4689999999986654 4 77899999999999977777666665432 358999999 88888999999988765
Q ss_pred --ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh--hhccCccEEEEcccccccC-cchHHHHH
Q psy13010 116 --FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIKS-SSSMRWKL 190 (573)
Q Consensus 116 --~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~--l~~~~~~~vIiDE~h~~kn-~~s~~~~~ 190 (573)
.....+.+... ....... ....+++++++++.+...... +...+++++|+||+|.+.+ ..+.....
T Consensus 82 ~~~~~~~~~~~~~-~~~~~~~--------~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 152 (201)
T smart00487 82 GLKVVGLYGGDSK-REQLRKL--------ESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEK 152 (201)
T ss_pred CeEEEEEeCCcch-HHHHHHH--------hcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHH
Confidence 33444444432 2222211 113348999999999877655 4556788999999999985 33333333
Q ss_pred H-Hhc-ccCcEEEEeccCCCCCH
Q psy13010 191 L-LGF-SCRNRLLLSGTPIQNSM 211 (573)
Q Consensus 191 ~-~~l-~~~~~~lLTgTP~~n~~ 211 (573)
+ ..+ ...+++++||||..+..
T Consensus 153 ~~~~~~~~~~~v~~saT~~~~~~ 175 (201)
T smart00487 153 LLKLLPKNVQLLLLSATPPEEIE 175 (201)
T ss_pred HHHhCCccceEEEEecCCchhHH
Confidence 3 333 47789999999975433
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.51 E-value=5.1e-12 Score=144.73 Aligned_cols=156 Identities=15% Similarity=0.188 Sum_probs=103.2
Q ss_pred hccHHHHHHHHHHHHHHHhC--CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCC
Q psy13010 39 GNLKHYQLKGMNWLANLYDQ--GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPD 115 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~--~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~ 115 (573)
-.+.+.|..++.-+..-+.+ +...+++.++|+|||.+++..+...... ...+||++| ..|..|..+.+.+.+..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 37999999999877665443 3567999999999999876333322222 247999999 66667888888876643
Q ss_pred --ceEEeecCChh--HHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHH
Q psy13010 116 --FKVVPYWGSPQ--ERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLL 191 (573)
Q Consensus 116 --~~v~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~ 191 (573)
.++.++.|... +...... .. ..+..+|+|.|++.+... +.-.+.+++|+||+|++... ....+
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~--~l-----~~g~~dIVVgTp~lL~~~---v~~~~L~lLVIDEahrfG~~---~~e~l 742 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILA--EA-----AEGKIDILIGTHKLLQSD---VKWKDLGLLIVDEEHRFGVR---HKERI 742 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHH--HH-----HhCCCCEEEECHHHHhCC---CCHhhCCEEEEechhhcchh---HHHHH
Confidence 45555555432 2222111 00 124678999999876532 22236789999999998432 33445
Q ss_pred Hhcc-cCcEEEEeccCCCCC
Q psy13010 192 LGFS-CRNRLLLSGTPIQNS 210 (573)
Q Consensus 192 ~~l~-~~~~~lLTgTP~~n~ 210 (573)
+.+. ....+++||||.+..
T Consensus 743 k~l~~~~qvLl~SATpiprt 762 (1147)
T PRK10689 743 KAMRADVDILTLTATPIPRT 762 (1147)
T ss_pred HhcCCCCcEEEEcCCCCHHH
Confidence 5553 457899999998744
No 50
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.51 E-value=2.7e-13 Score=119.20 Aligned_cols=136 Identities=22% Similarity=0.267 Sum_probs=97.8
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHH-HHHHHHHHHCC-CceEEeecCChhHHHHHHHHhhhc
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLH-NWQQEMERFVP-DFKVVPYWGSPQERKILRQFWDMK 138 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~-qW~~el~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~ 138 (573)
++++..++|+|||.+++.++..+... +..++++|+||...+. +|.+.+..+.. ...+.++.+.........
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 74 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEK------ 74 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHH------
Confidence 56899999999999999999988876 3347999999966555 56677777764 455666665543332221
Q ss_pred ccccCCCCceEEEeehHhHHhhHhhh--hccCccEEEEcccccccCcchHHH---HHHHhcccCcEEEEeccC
Q psy13010 139 NLHTKDASFHVVITSYQLVVSDFKYF--NRIKWQYLILDEAQAIKSSSSMRW---KLLLGFSCRNRLLLSGTP 206 (573)
Q Consensus 139 ~~~~~~~~~~i~i~sy~~~~~~~~~l--~~~~~~~vIiDE~h~~kn~~s~~~---~~~~~l~~~~~~lLTgTP 206 (573)
......++++++|+.+....... ....++++|+||+|.+.+...... ..........++++||||
T Consensus 75 ---~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 75 ---LLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred ---HhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 11256789999999887654432 345799999999999988765443 233344677899999998
No 51
>PRK02362 ski2-like helicase; Provisional
Probab=99.45 E-value=7.3e-12 Score=140.16 Aligned_cols=149 Identities=22% Similarity=0.121 Sum_probs=102.9
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHH-HHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC-Cc
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSI-AFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP-DF 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~i-a~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~-~~ 116 (573)
.|+|+|.+++.. .+..+.+.+++.++|+|||+.+. +++..+.. .+++|+|+| ..++.|+.+++.++.+ +.
T Consensus 23 ~l~p~Q~~ai~~---~~~~g~nvlv~APTGSGKTlia~lail~~l~~----~~kal~i~P~raLa~q~~~~~~~~~~~g~ 95 (737)
T PRK02362 23 ELYPPQAEAVEA---GLLDGKNLLAAIPTASGKTLIAELAMLKAIAR----GGKALYIVPLRALASEKFEEFERFEELGV 95 (737)
T ss_pred cCCHHHHHHHHH---HHhCCCcEEEECCCcchHHHHHHHHHHHHHhc----CCcEEEEeChHHHHHHHHHHHHHhhcCCC
Confidence 699999999863 24457889999999999999984 44444432 257999999 8899999999987643 57
Q ss_pred eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhh--hccCccEEEEcccccccCcc-hHHHH-H--
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYF--NRIKWQYLILDEAQAIKSSS-SMRWK-L-- 190 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l--~~~~~~~vIiDE~h~~kn~~-s~~~~-~-- 190 (573)
++..+.|...... ......+|+|+|++.+......- .-...++||+||+|.+.+.. ...+. .
T Consensus 96 ~v~~~tGd~~~~~------------~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~ 163 (737)
T PRK02362 96 RVGISTGDYDSRD------------EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLA 163 (737)
T ss_pred EEEEEeCCcCccc------------cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHH
Confidence 8888877543211 11245789999999886543311 11256899999999997533 11211 1
Q ss_pred -HHhc-ccCcEEEEeccCC
Q psy13010 191 -LLGF-SCRNRLLLSGTPI 207 (573)
Q Consensus 191 -~~~l-~~~~~~lLTgTP~ 207 (573)
++.+ .....++||||.-
T Consensus 164 rl~~~~~~~qii~lSATl~ 182 (737)
T PRK02362 164 KLRRLNPDLQVVALSATIG 182 (737)
T ss_pred HHHhcCCCCcEEEEcccCC
Confidence 2222 2457899999974
No 52
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.44 E-value=2.9e-11 Score=136.78 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=98.6
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHH-HHHHHHhhhcC-----CCCCEEEEcC-cccHHHHHHHHH--
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSI-AFLCHIAETYD-----VWGPFLIISP-ASTLHNWQQEME-- 110 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~i-a~~~~~~~~~~-----~~~~~LIV~P-~~l~~qW~~el~-- 110 (573)
.|+|+|.+++..+ ..+..+++..++|+|||..++ .++..+..... ....+|+|+| ..|..|+.+.+.
T Consensus 32 ~~tpiQ~~Ai~~i----l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~ 107 (876)
T PRK13767 32 TFTPPQRYAIPLI----HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEP 107 (876)
T ss_pred CCCHHHHHHHHHH----HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHH
Confidence 5999999998754 347789999999999999875 34444443211 1224899999 777777765433
Q ss_pred -----HHC-------CCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhh--ccCccEEEE
Q psy13010 111 -----RFV-------PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFN--RIKWQYLIL 174 (573)
Q Consensus 111 -----~~~-------~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~--~~~~~~vIi 174 (573)
.+. ++.++.+.+|........+.. ...++|+|+|.+.+..... .+. -.+.++||+
T Consensus 108 l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l---------~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 108 LTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML---------KKPPHILITTPESLAILLNSPKFREKLRTVKWVIV 178 (876)
T ss_pred HHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH---------hCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEE
Confidence 332 356778888865443322221 1456899999999854321 110 125688999
Q ss_pred cccccccCcc--hHHHHH---HHhcc--cCcEEEEeccCC
Q psy13010 175 DEAQAIKSSS--SMRWKL---LLGFS--CRNRLLLSGTPI 207 (573)
Q Consensus 175 DE~h~~kn~~--s~~~~~---~~~l~--~~~~~lLTgTP~ 207 (573)
||+|.+.+.. ...... +..+. ...++++|||.-
T Consensus 179 DE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~ 218 (876)
T PRK13767 179 DEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIE 218 (876)
T ss_pred echhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccC
Confidence 9999986432 212222 22222 346899999974
No 53
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.38 E-value=8.5e-11 Score=130.42 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=100.4
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHH-HHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHC-CCc
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSI-AFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFV-PDF 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~i-a~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~-~~~ 116 (573)
.|++||.+++..+. .+...++...+|+|||+..+ .++..+... + ....|||+| ..|..|=.+++.++. .+.
T Consensus 36 ~p~~~Q~~ai~~il----~G~nvvv~apTGSGKTla~~LPiL~~l~~~-~-~~~aL~l~PtraLa~q~~~~l~~l~~~~i 109 (742)
T TIGR03817 36 RPWQHQARAAELAH----AGRHVVVATGTASGKSLAYQLPVLSALADD-P-RATALYLAPTKALAADQLRAVRELTLRGV 109 (742)
T ss_pred cCCHHHHHHHHHHH----CCCCEEEECCCCCcHHHHHHHHHHHHHhhC-C-CcEEEEEcChHHHHHHHHHHHHHhccCCe
Confidence 69999999997553 47889999999999999864 444444442 2 247899999 777777777777764 357
Q ss_pred eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH-------hhhhccCccEEEEcccccccC-cchHHH
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF-------KYFNRIKWQYLILDEAQAIKS-SSSMRW 188 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~-------~~l~~~~~~~vIiDE~h~~kn-~~s~~~ 188 (573)
++.+|.|.......... ....+|+++|.+.+.... ..+ -.+..+||+||+|.+.+ ..+...
T Consensus 110 ~v~~~~Gdt~~~~r~~i----------~~~~~IivtTPd~L~~~~L~~~~~~~~~-l~~l~~vViDEah~~~g~fg~~~~ 178 (742)
T TIGR03817 110 RPATYDGDTPTEERRWA----------REHARYVLTNPDMLHRGILPSHARWARF-LRRLRYVVIDECHSYRGVFGSHVA 178 (742)
T ss_pred EEEEEeCCCCHHHHHHH----------hcCCCEEEEChHHHHHhhccchhHHHHH-HhcCCEEEEeChhhccCccHHHHH
Confidence 88888886543221110 033589999999886421 111 12568999999999865 233333
Q ss_pred HHHHhc---c-----cCcEEEEeccCC
Q psy13010 189 KLLLGF---S-----CRNRLLLSGTPI 207 (573)
Q Consensus 189 ~~~~~l---~-----~~~~~lLTgTP~ 207 (573)
..+..+ . ....+++|||.-
T Consensus 179 ~il~rL~ri~~~~g~~~q~i~~SATi~ 205 (742)
T TIGR03817 179 LVLRRLRRLCARYGASPVFVLASATTA 205 (742)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEecCCC
Confidence 333333 1 235789999953
No 54
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.37 E-value=7e-11 Score=131.24 Aligned_cols=162 Identities=14% Similarity=0.152 Sum_probs=99.6
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKV 118 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v 118 (573)
.|+|.|.+++..++ .+..+|+...+|.|||+....-+ +.. .+.+|||+| .+|+.++...+... +.+.
T Consensus 460 sFRp~Q~eaI~aiL----~GrDVLVimPTGSGKSLcYQLPA--L~~----~GiTLVISPLiSLmqDQV~~L~~~--GI~A 527 (1195)
T PLN03137 460 SFRPNQREIINATM----SGYDVFVLMPTGGGKSLTYQLPA--LIC----PGITLVISPLVSLIQDQIMNLLQA--NIPA 527 (1195)
T ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCccHHHHHHHHH--HHc----CCcEEEEeCHHHHHHHHHHHHHhC--CCeE
Confidence 69999999997554 37789999999999998653222 222 257899999 67777666666553 4555
Q ss_pred EeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhh---Hhhhh----ccCccEEEEcccccccCcc---hHHH
Q psy13010 119 VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD---FKYFN----RIKWQYLILDEAQAIKSSS---SMRW 188 (573)
Q Consensus 119 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~---~~~l~----~~~~~~vIiDE~h~~kn~~---s~~~ 188 (573)
..+.++....+....+... ....+.++|+++|.+.+... ...+. .....+|||||+|.+..-+ -.-+
T Consensus 528 a~L~s~~s~~eq~~ilr~l---~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdY 604 (1195)
T PLN03137 528 ASLSAGMEWAEQLEILQEL---SSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDY 604 (1195)
T ss_pred EEEECCCCHHHHHHHHHHH---HhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHH
Confidence 5555543322221111111 11235689999999987532 12222 1346889999999975321 1122
Q ss_pred HHH----HhcccCcEEEEeccCCCCCHHHHHH
Q psy13010 189 KLL----LGFSCRNRLLLSGTPIQNSMAELWA 216 (573)
Q Consensus 189 ~~~----~~l~~~~~~lLTgTP~~n~~~el~~ 216 (573)
+.+ ..+....+++||||....-..++..
T Consensus 605 r~L~~Lr~~fp~vPilALTATAT~~V~eDI~~ 636 (1195)
T PLN03137 605 QGLGILKQKFPNIPVLALTATATASVKEDVVQ 636 (1195)
T ss_pred HHHHHHHHhCCCCCeEEEEecCCHHHHHHHHH
Confidence 222 2234567899999987665555443
No 55
>KOG0331|consensus
Probab=99.36 E-value=6.1e-11 Score=121.92 Aligned_cols=152 Identities=23% Similarity=0.303 Sum_probs=100.7
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHH-HHHHHHhh-hc---CCCCC-EEEEcC-cccHHHHHHHHHHH
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSI-AFLCHIAE-TY---DVWGP-FLIISP-ASTLHNWQQEMERF 112 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~i-a~~~~~~~-~~---~~~~~-~LIV~P-~~l~~qW~~el~~~ 112 (573)
.+.|-|-.+.-.+ ..+..++...++|+|||+.=+ -+|..+.. .+ ...+| +||++| .-|..|=..++.++
T Consensus 113 ~PtpIQaq~wp~~----l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIA----LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhccccee----ccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 5777777775443 347888999999999998642 33333333 11 11234 899999 66777888888888
Q ss_pred CCCce--E-EeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH--hhhhccCccEEEEcccccccC--cch
Q psy13010 113 VPDFK--V-VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF--KYFNRIKWQYLILDEAQAIKS--SSS 185 (573)
Q Consensus 113 ~~~~~--v-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~--~~l~~~~~~~vIiDE~h~~kn--~~s 185 (573)
...+. . ++|.|.+.... ++.. ....+|+|.|...+.... ..+.-.+..++|+||+.++-. ...
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q-~~~l---------~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~ 258 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQ-LRDL---------ERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEP 258 (519)
T ss_pred cCCCCccEEEEeCCCCccHH-HHHH---------hcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHH
Confidence 76544 4 55555544332 3222 166899999999886643 344455788999999999854 446
Q ss_pred HHHHHHHhc-ccCc-EEEEecc
Q psy13010 186 MRWKLLLGF-SCRN-RLLLSGT 205 (573)
Q Consensus 186 ~~~~~~~~l-~~~~-~~lLTgT 205 (573)
+.-+.+..+ .+.. .++.|||
T Consensus 259 qI~~Il~~i~~~~rQtlm~saT 280 (519)
T KOG0331|consen 259 QIRKILSQIPRPDRQTLMFSAT 280 (519)
T ss_pred HHHHHHHhcCCCcccEEEEeee
Confidence 666667777 4443 5666666
No 56
>PRK00254 ski2-like helicase; Provisional
Probab=99.35 E-value=1.4e-10 Score=129.44 Aligned_cols=156 Identities=18% Similarity=0.108 Sum_probs=106.3
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHH-HHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC-Cc
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQS-IAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP-DF 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~-ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~-~~ 116 (573)
.|+|+|.+++.- .+..+...+++.++|+|||+.+ ++++..+... .+.+|+|+| ..++.|+.+++.+|.. +.
T Consensus 23 ~l~~~Q~~ai~~---~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~---~~~~l~l~P~~aLa~q~~~~~~~~~~~g~ 96 (720)
T PRK00254 23 ELYPPQAEALKS---GVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE---GGKAVYLVPLKALAEEKYREFKDWEKLGL 96 (720)
T ss_pred CCCHHHHHHHHH---HHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHHHHHHHHHHHHhhcCC
Confidence 699999999862 2345788999999999999998 4555555432 257899999 7888899988887642 57
Q ss_pred eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh--hhccCccEEEEcccccccCc--chHHHHHHH
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIKSS--SSMRWKLLL 192 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~--l~~~~~~~vIiDE~h~~kn~--~s~~~~~~~ 192 (573)
++..+.|....... ....++|+|+|++.+...... ..-.+.++||+||+|.+... .......+.
T Consensus 97 ~v~~~~Gd~~~~~~------------~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~ 164 (720)
T PRK00254 97 RVAMTTGDYDSTDE------------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILT 164 (720)
T ss_pred EEEEEeCCCCCchh------------hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHH
Confidence 77777775432211 114578999999987654321 01135789999999998643 233333343
Q ss_pred hc-ccCcEEEEeccCCCCCHHHHH
Q psy13010 193 GF-SCRNRLLLSGTPIQNSMAELW 215 (573)
Q Consensus 193 ~l-~~~~~~lLTgTP~~n~~~el~ 215 (573)
.+ .....+++|||.-+ +.++.
T Consensus 165 ~l~~~~qiI~lSATl~n--~~~la 186 (720)
T PRK00254 165 HMLGRAQILGLSATVGN--AEELA 186 (720)
T ss_pred hcCcCCcEEEEEccCCC--HHHHH
Confidence 44 34578999999743 45543
No 57
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.34 E-value=9.2e-11 Score=126.83 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=62.3
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCC
Q psy13010 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGIL 564 (573)
Q Consensus 496 ~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~ 564 (573)
....|..++.+.+.+....+..|||||......+.+...|.+.|+++..++|+++.++|..+...|+..
T Consensus 405 ~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g 473 (762)
T TIGR03714 405 TLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG 473 (762)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC
Confidence 345699999999998878899999999999999999999999999999999999999988888777665
No 58
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.34 E-value=3.4e-11 Score=113.39 Aligned_cols=156 Identities=22% Similarity=0.245 Sum_probs=105.9
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHH-HHHHHHHhhhc-CCCCCEEEEcC-cccHHHHHHHHHHHCC--
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQS-IAFLCHIAETY-DVWGPFLIISP-ASTLHNWQQEMERFVP-- 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~-ia~~~~~~~~~-~~~~~~LIV~P-~~l~~qW~~el~~~~~-- 114 (573)
+|+++|.++++.+.+ +...++..++|+|||.+. +.++..+.... .....++||+| ..++.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 589999999976644 778899999999999885 45555555441 22346899999 7788899999988764
Q ss_pred CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCcc-hH-HHHH
Q psy13010 115 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSSS-SM-RWKL 190 (573)
Q Consensus 115 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~~-s~-~~~~ 190 (573)
+..+..+.|........... ....+|+++|.+.+..... .+.-..++++|+||+|.+.+.. .. ....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~---------~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~ 167 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKL---------KRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREI 167 (203)
T ss_pred CceEEEEECCCCHHHHHHHh---------cCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHH
Confidence 46666677765443333221 1466899999887755322 1222357899999999986443 11 2222
Q ss_pred HHhcc-cCcEEEEeccCCC
Q psy13010 191 LLGFS-CRNRLLLSGTPIQ 208 (573)
Q Consensus 191 ~~~l~-~~~~~lLTgTP~~ 208 (573)
+..+. ....+++||||-.
T Consensus 168 ~~~l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 168 LKLLPKDRQTLLFSATMPK 186 (203)
T ss_pred HHhCCcccEEEEEeccCCH
Confidence 33333 5678999999983
No 59
>PRK01172 ski2-like helicase; Provisional
Probab=99.33 E-value=1.6e-10 Score=128.43 Aligned_cols=149 Identities=18% Similarity=0.079 Sum_probs=99.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC-Cce
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP-DFK 117 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~-~~~ 117 (573)
.|+|+|.+++..+ ..+...+++.++|+|||+.+...+......+ +.+++|+| ..+..|+.+++.++.. +.+
T Consensus 22 ~l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~~~---~k~v~i~P~raLa~q~~~~~~~l~~~g~~ 94 (674)
T PRK01172 22 ELYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFLAG---LKSIYIVPLRSLAMEKYEELSRLRSLGMR 94 (674)
T ss_pred CCCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHHhC---CcEEEEechHHHHHHHHHHHHHHhhcCCe
Confidence 5899999999754 4577899999999999998765444333322 47899999 7888899998887643 466
Q ss_pred EEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhh--ccCccEEEEcccccccCcc-hHHHHH----
Q psy13010 118 VVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFN--RIKWQYLILDEAQAIKSSS-SMRWKL---- 190 (573)
Q Consensus 118 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~--~~~~~~vIiDE~h~~kn~~-s~~~~~---- 190 (573)
+....|........ ....+|+++|++.+........ -..+++||+||+|.+.+.. ......
T Consensus 95 v~~~~G~~~~~~~~------------~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~ 162 (674)
T PRK01172 95 VKISIGDYDDPPDF------------IKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSS 162 (674)
T ss_pred EEEEeCCCCCChhh------------hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHH
Confidence 66666653322111 1356899999998755432211 1357899999999986532 112222
Q ss_pred HHhc-ccCcEEEEeccCC
Q psy13010 191 LLGF-SCRNRLLLSGTPI 207 (573)
Q Consensus 191 ~~~l-~~~~~~lLTgTP~ 207 (573)
++.+ ...+.+++|||+-
T Consensus 163 ~~~~~~~~riI~lSATl~ 180 (674)
T PRK01172 163 ARYVNPDARILALSATVS 180 (674)
T ss_pred HHhcCcCCcEEEEeCccC
Confidence 2222 2346899999973
No 60
>PRK09401 reverse gyrase; Reviewed
Probab=99.33 E-value=2.6e-10 Score=131.12 Aligned_cols=130 Identities=18% Similarity=0.253 Sum_probs=90.0
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCC--
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPD-- 115 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~-- 115 (573)
..++++|..++..++ .+...++..++|+|||..++..+..+... ...+|||+| ..|+.||.+.+.++...
T Consensus 79 ~~pt~iQ~~~i~~il----~g~dv~i~ApTGsGKT~f~l~~~~~l~~~---g~~alIL~PTreLa~Qi~~~l~~l~~~~~ 151 (1176)
T PRK09401 79 SKPWSLQRTWAKRLL----LGESFAIIAPTGVGKTTFGLVMSLYLAKK---GKKSYIIFPTRLLVEQVVEKLEKFGEKVG 151 (1176)
T ss_pred CCCcHHHHHHHHHHH----CCCcEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEeccHHHHHHHHHHHHHHhhhcC
Confidence 368999999886443 47778888899999997554433333322 257899999 88888999999988753
Q ss_pred ceEEeecCCh----hHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccC
Q psy13010 116 FKVVPYWGSP----QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKS 182 (573)
Q Consensus 116 ~~v~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn 182 (573)
..+.+..|.. +.+...... -..+.++|+|+|...+......+...+++++|+||+|++-.
T Consensus 152 ~~~~~~~g~~~~~~~ek~~~~~~-------l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~ 215 (1176)
T PRK09401 152 CGVKILYYHSSLKKKEKEEFLER-------LKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLK 215 (1176)
T ss_pred ceEEEEEccCCcchhHHHHHHHH-------HhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhh
Confidence 3443333321 122211110 01156899999999998877767667799999999999754
No 61
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.32 E-value=2.8e-11 Score=110.33 Aligned_cols=157 Identities=17% Similarity=0.217 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCC--ceE
Q psy13010 42 KHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPD--FKV 118 (573)
Q Consensus 42 ~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~--~~v 118 (573)
.|+|.+++..+. .+...++..++|+|||..++..+....... ..+.++|++| ..++.|-.+++.+++.. .++
T Consensus 1 t~~Q~~~~~~i~----~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAII----SGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRV 75 (169)
T ss_dssp -HHHHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSE
T ss_pred CHHHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccc
Confidence 379999987554 366689999999999999875555444433 3358999999 77888888999888754 566
Q ss_pred EeecCChhHH-HHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh--hhccCccEEEEcccccccCc--chHHHHHHHh
Q psy13010 119 VPYWGSPQER-KILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIKSS--SSMRWKLLLG 193 (573)
Q Consensus 119 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~--l~~~~~~~vIiDE~h~~kn~--~s~~~~~~~~ 193 (573)
..+.|..... ...... ....+|+++|++.+...... +.-...++||+||+|.+... .......+..
T Consensus 76 ~~~~~~~~~~~~~~~~~---------~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~ 146 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVL---------SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRR 146 (169)
T ss_dssp EEESTTSCHHHHHHHHH---------HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHH
T ss_pred ccccccccccccccccc---------cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHH
Confidence 6666544322 211111 15678999999999876653 22234799999999998652 2222333333
Q ss_pred c---ccCcEEEEeccCCCCCHHH
Q psy13010 194 F---SCRNRLLLSGTPIQNSMAE 213 (573)
Q Consensus 194 l---~~~~~~lLTgTP~~n~~~e 213 (573)
+ +....+++||||- ..+.+
T Consensus 147 ~~~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 147 LKRFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp SHTTTTSEEEEEESSST-HHHHH
T ss_pred hcCCCCCcEEEEeeCCC-hhHhh
Confidence 3 2457899999998 55443
No 62
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=8.2e-10 Score=117.85 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=103.4
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHH-HHHHHHHhh-hcCCCCCEEEEcC-cccHHHHHHHHHHHCC--
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQS-IAFLCHIAE-TYDVWGPFLIISP-ASTLHNWQQEMERFVP-- 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~-ia~~~~~~~-~~~~~~~~LIV~P-~~l~~qW~~el~~~~~-- 114 (573)
.+.|.|..++-.++. +...+....+|+|||+.- +-++..+.. ......+.||++| ..|..|=.+++.++..
T Consensus 51 ~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 51 EPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhc
Confidence 577899999865443 678899999999999754 344444432 1111112899999 6677788888877653
Q ss_pred -CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH--hhhhccCccEEEEcccccccCcc--hHHHH
Q psy13010 115 -DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF--KYFNRIKWQYLILDEAQAIKSSS--SMRWK 189 (573)
Q Consensus 115 -~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~--~~l~~~~~~~vIiDE~h~~kn~~--s~~~~ 189 (573)
++++..+.|............ ...+|+|.|...+.... ..+...+..++|+||+.++-+.+ .....
T Consensus 127 ~~~~~~~i~GG~~~~~q~~~l~---------~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~ 197 (513)
T COG0513 127 GGLRVAVVYGGVSIRKQIEALK---------RGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEK 197 (513)
T ss_pred CCccEEEEECCCCHHHHHHHHh---------cCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHH
Confidence 466666666544333333321 13899999999887543 24555678899999999997754 33444
Q ss_pred HHHhcc-cCcEEEEeccCCC
Q psy13010 190 LLLGFS-CRNRLLLSGTPIQ 208 (573)
Q Consensus 190 ~~~~l~-~~~~~lLTgTP~~ 208 (573)
.+..+. ....++.|||.-.
T Consensus 198 I~~~~p~~~qtllfSAT~~~ 217 (513)
T COG0513 198 ILKALPPDRQTLLFSATMPD 217 (513)
T ss_pred HHHhCCcccEEEEEecCCCH
Confidence 444443 3567899999544
No 63
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.30 E-value=2.7e-10 Score=119.23 Aligned_cols=159 Identities=16% Similarity=0.238 Sum_probs=113.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCC--CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC--
Q psy13010 40 NLKHYQLKGMNWLANLYDQGI--NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP-- 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~--~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~-- 114 (573)
.|...|+.++.-+..-+.++. .-+|--|+|+|||++|+..+......+. -+...+| .-|.+|-.+.+.+|++
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~---Q~ALMAPTEILA~QH~~~~~~~l~~~ 338 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY---QAALMAPTEILAEQHYESLRKWLEPL 338 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC---eeEEeccHHHHHHHHHHHHHHHhhhc
Confidence 789999999987766555443 3388889999999998766666666542 5677889 4555689999999997
Q ss_pred CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhc
Q psy13010 115 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF 194 (573)
Q Consensus 115 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l 194 (573)
+.+|....|+-+.+..-...... ..+..+++|-|+..+.....+ .+..+||+||-|+|.-. +-..++.-
T Consensus 339 ~i~V~lLtG~~kgk~r~~~l~~l-----~~G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQHRFGV~---QR~~L~~K 407 (677)
T COG1200 339 GIRVALLTGSLKGKARKEILEQL-----ASGEIDIVVGTHALIQDKVEF---HNLGLVIIDEQHRFGVH---QRLALREK 407 (677)
T ss_pred CCeEEEeecccchhHHHHHHHHH-----hCCCCCEEEEcchhhhcceee---cceeEEEEeccccccHH---HHHHHHHh
Confidence 47788888874433332222222 237889999999988765332 25689999999999643 22333333
Q ss_pred -c-cCcEEEEeccCCCCCHH
Q psy13010 195 -S-CRNRLLLSGTPIQNSMA 212 (573)
Q Consensus 195 -~-~~~~~lLTgTP~~n~~~ 212 (573)
. ..+.+.+||||++.++.
T Consensus 408 G~~~Ph~LvMTATPIPRTLA 427 (677)
T COG1200 408 GEQNPHVLVMTATPIPRTLA 427 (677)
T ss_pred CCCCCcEEEEeCCCchHHHH
Confidence 3 46899999999997754
No 64
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.27 E-value=4.2e-09 Score=107.62 Aligned_cols=156 Identities=16% Similarity=0.144 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHhCC-CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHC------CC
Q psy13010 44 YQLKGMNWLANLYDQG-INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFV------PD 115 (573)
Q Consensus 44 ~Q~~~v~~l~~~~~~~-~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~------~~ 115 (573)
||.++++.+.+ .+ ...+++..+|+|||..++..+. .. ..++++++| ..+..+|.+.+..++ .+
T Consensus 1 hQ~~~~~~~~~---~~~~~~~i~apTGsGKT~~~~~~~l--~~----~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~ 71 (357)
T TIGR03158 1 HQVATFEALQS---KDADIIFNTAPTGAGKTLAWLTPLL--HG----ENDTIALYPTNALIEDQTEAIKEFVDVFKPERD 71 (357)
T ss_pred CHHHHHHHHHc---CCCCEEEEECCCCCCHHHHHHHHHH--Hc----CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCC
Confidence 79999875543 22 2358899999999987654333 21 246799999 778888888887776 24
Q ss_pred ceEEeecCChhHH-HHHH-HHhhhcc---------cccCCCCceEEEeehHhHHhhHhhhh----------ccCccEEEE
Q psy13010 116 FKVVPYWGSPQER-KILR-QFWDMKN---------LHTKDASFHVVITSYQLVVSDFKYFN----------RIKWQYLIL 174 (573)
Q Consensus 116 ~~v~~~~g~~~~~-~~~~-~~~~~~~---------~~~~~~~~~i~i~sy~~~~~~~~~l~----------~~~~~~vIi 174 (573)
..+..+.|..... +... ......+ .........+++|+++.+......+. .....+||+
T Consensus 72 ~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 72 VNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred ceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 5666677752111 1111 0000000 00112467899999998874332110 135789999
Q ss_pred cccccccCcch-------HHHHHHHhcc-cCcEEEEeccCCC
Q psy13010 175 DEAQAIKSSSS-------MRWKLLLGFS-CRNRLLLSGTPIQ 208 (573)
Q Consensus 175 DE~h~~kn~~s-------~~~~~~~~l~-~~~~~lLTgTP~~ 208 (573)
||+|.+....- .....+.... ..+.+++||||-+
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~ 193 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDP 193 (357)
T ss_pred ecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCH
Confidence 99999874221 1122222222 3588999999853
No 65
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.26 E-value=2.1e-11 Score=129.19 Aligned_cols=161 Identities=16% Similarity=0.189 Sum_probs=120.9
Q ss_pred CccCCCCchhhhccHHHHHHHHHHHHHHHhC-CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHH
Q psy13010 28 EVERPQPGLFRGNLKHYQLKGMNWLANLYDQ-GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNW 105 (573)
Q Consensus 28 ~~~~~~p~~l~~~L~~~Q~~~v~~l~~~~~~-~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW 105 (573)
......|......++.||..|++.+.+.+.+ ..++||..-+|+|||.+|+++|..+... +..+++|.++- .+|+.|=
T Consensus 153 ~~~~~~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~-~~~KRVLFLaDR~~Lv~QA 231 (875)
T COG4096 153 QQLAYIDIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKS-GWVKRVLFLADRNALVDQA 231 (875)
T ss_pred cccccCcccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhc-chhheeeEEechHHHHHHH
Confidence 3445556656668999999999999998875 4467999999999999999999999987 44578999999 8899999
Q ss_pred HHHHHHHCCCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh-------hhhccCccEEEEcccc
Q psy13010 106 QQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK-------YFNRIKWQYLILDEAQ 178 (573)
Q Consensus 106 ~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~-------~l~~~~~~~vIiDE~h 178 (573)
..++..+.|........... ....++.|++.+|.++..... .+....||+||+||||
T Consensus 232 ~~af~~~~P~~~~~n~i~~~----------------~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH 295 (875)
T COG4096 232 YGAFEDFLPFGTKMNKIEDK----------------KGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH 295 (875)
T ss_pred HHHHHHhCCCccceeeeecc----------------cCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh
Confidence 99999999987665544332 122467999999999976532 3344569999999999
Q ss_pred cccCcchHHHHHHHhcccCcEEEEeccCCC
Q psy13010 179 AIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208 (573)
Q Consensus 179 ~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~ 208 (573)
+-- .+.++++...=...+++|||||-.
T Consensus 296 Rgi---~~~~~~I~dYFdA~~~gLTATP~~ 322 (875)
T COG4096 296 RGI---YSEWSSILDYFDAATQGLTATPKE 322 (875)
T ss_pred hhH---HhhhHHHHHHHHHHHHhhccCccc
Confidence 831 112233333334456777999977
No 66
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.24 E-value=1.4e-09 Score=125.26 Aligned_cols=130 Identities=14% Similarity=0.226 Sum_probs=90.3
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCC--c
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPD--F 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~--~ 116 (573)
.+++.|..++..++ .+...++..++|+|||..++.++..+... ...+|||+| ..|+.|+.+.+..+... .
T Consensus 78 ~p~~iQ~~~i~~il----~G~d~vi~ApTGsGKT~f~l~~~~~l~~~---g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i 150 (1171)
T TIGR01054 78 EPWSIQKMWAKRVL----RGDSFAIIAPTGVGKTTFGLAMSLFLAKK---GKRCYIILPTTLLVIQVAEKISSLAEKAGV 150 (1171)
T ss_pred CCcHHHHHHHHHHh----CCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEeCHHHHHHHHHHHHHHHHHhcCC
Confidence 68999999886443 36777889999999998665555444332 247899999 88888999999887743 2
Q ss_pred e---EEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccC
Q psy13010 117 K---VVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKS 182 (573)
Q Consensus 117 ~---v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn 182 (573)
. +.+|+|.-............ ..+.++|+|+|...+......+.. +++++|+||+|.+-.
T Consensus 151 ~~~~i~~~~Gg~~~~e~~~~~~~l-----~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 151 GTVNIGAYHSRLPTKEKKEFMERI-----ENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred ceeeeeeecCCCCHHHHHHHHHHH-----hcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhh
Confidence 2 33465643222211110000 115689999999999877666654 899999999999855
No 67
>KOG0330|consensus
Probab=99.23 E-value=4.5e-10 Score=108.81 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=102.3
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHH-HHHHHHHhhhcCCCCCEEEEcCc-ccHHHHHHHHHHHC--CC
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQS-IAFLCHIAETYDVWGPFLIISPA-STLHNWQQEMERFV--PD 115 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~-ia~~~~~~~~~~~~~~~LIV~P~-~l~~qW~~el~~~~--~~ 115 (573)
.+.+-|.+++=.++ .+.-+|.+.|+|+|||..- +-++..+...... -..||++|. .+..|-.+.+.... .+
T Consensus 83 ~PT~IQ~~aiP~~L----~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~-~~~lVLtPtRELA~QI~e~fe~Lg~~ig 157 (476)
T KOG0330|consen 83 KPTKIQSEAIPVAL----GGRDVIGLAETGSGKTGAFALPILQRLLQEPKL-FFALVLTPTRELAQQIAEQFEALGSGIG 157 (476)
T ss_pred CCchhhhhhcchhh----CCCcEEEEeccCCCchhhhHHHHHHHHHcCCCC-ceEEEecCcHHHHHHHHHHHHHhccccC
Confidence 45667777775443 3778899999999999864 4556666665333 467999994 45556666666653 35
Q ss_pred ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh---hhhccCccEEEEcccccccCcc--hHHHHH
Q psy13010 116 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK---YFNRIKWQYLILDEAQAIKSSS--SMRWKL 190 (573)
Q Consensus 116 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~---~l~~~~~~~vIiDE~h~~kn~~--s~~~~~ 190 (573)
+++.++.|.-.-.....+ ....++|++.|...+..... -|.--...++|+|||.++-|.+ -..-+.
T Consensus 158 lr~~~lvGG~~m~~q~~~---------L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~I 228 (476)
T KOG0330|consen 158 LRVAVLVGGMDMMLQANQ---------LSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYI 228 (476)
T ss_pred eEEEEEecCchHHHHHHH---------hhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHH
Confidence 888888887554333322 12667899999998876544 2223345789999999998754 344455
Q ss_pred HHhccc-CcEEEEeccCC
Q psy13010 191 LLGFSC-RNRLLLSGTPI 207 (573)
Q Consensus 191 ~~~l~~-~~~~lLTgTP~ 207 (573)
++.+.. +..+|.|||..
T Consensus 229 Lk~ip~erqt~LfsATMt 246 (476)
T KOG0330|consen 229 LKVIPRERQTFLFSATMT 246 (476)
T ss_pred HHhcCccceEEEEEeecc
Confidence 555643 45577888843
No 68
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.22 E-value=2.5e-09 Score=117.16 Aligned_cols=153 Identities=14% Similarity=0.075 Sum_probs=91.4
Q ss_pred ccHHHHHHHHHHHHHHHhCCC-CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC---
Q psy13010 40 NLKHYQLKGMNWLANLYDQGI-NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP--- 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~-~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~--- 114 (573)
.++|+|.+++..+. .|. ..++..++|+|||..+.+++..+.......+.+++++| ..++.|=.+++.++..
T Consensus 15 ~PtpiQ~~~i~~il----~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~ 90 (844)
T TIGR02621 15 SPFPWQLSLAERFV----AGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLP 90 (844)
T ss_pred CCCHHHHHHHHHHH----cCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhc
Confidence 38999999997543 244 45667899999998654444433222222334445779 6677777777766542
Q ss_pred ----------------------CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhh-------
Q psy13010 115 ----------------------DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFN------- 165 (573)
Q Consensus 115 ----------------------~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~------- 165 (573)
.+++..+.|........... ....+|+|.|.+.+.+. .+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l---------~~~p~IIVgT~D~i~sr--~L~~gYg~~~ 159 (844)
T TIGR02621 91 DVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLD---------PHRPAVIVGTVDMIGSR--LLFSGYGCGF 159 (844)
T ss_pred ccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhc---------CCCCcEEEECHHHHcCC--cccccccccc
Confidence 25566556654433333321 14557999998777553 221
Q ss_pred ---------ccCccEEEEcccccccCcchHHHHHHHhc--cc----CcEEEEeccCC
Q psy13010 166 ---------RIKWQYLILDEAQAIKSSSSMRWKLLLGF--SC----RNRLLLSGTPI 207 (573)
Q Consensus 166 ---------~~~~~~vIiDE~h~~kn~~s~~~~~~~~l--~~----~~~~lLTgTP~ 207 (573)
-.+-.++|+||+|..........+.+..+ .. ...+++|||+-
T Consensus 160 ~~~pi~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p 216 (844)
T TIGR02621 160 KSRPLHAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSR 216 (844)
T ss_pred ccccchhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCC
Confidence 12457899999995444433333333322 11 36899999974
No 69
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.21 E-value=3.7e-09 Score=118.05 Aligned_cols=149 Identities=17% Similarity=0.237 Sum_probs=105.7
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHH-HHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHC---C
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSI-AFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFV---P 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~i-a~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~---~ 114 (573)
.|+.||.+|++.+. .+...++...+|+|||..-+ .++..+..... .+.|+|-| +.|...=.+.|.++. |
T Consensus 70 ~lY~HQ~~A~~~~~----~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~--a~AL~lYPtnALa~DQ~~rl~~~~~~~~ 143 (851)
T COG1205 70 RLYSHQVDALRLIR----EGRNVVVTTGTGSGKTESFLLPILDHLLRDPS--ARALLLYPTNALANDQAERLRELISDLP 143 (851)
T ss_pred cccHHHHHHHHHHH----CCCCEEEECCCCCchhHHHHHHHHHHHhhCcC--ccEEEEechhhhHhhHHHHHHHHHHhCC
Confidence 59999999987654 47889999999999999874 45555555432 47899999 666666777777765 3
Q ss_pred -CceEEeecCChhHHH--HHHHHhhhcccccCCCCceEEEeehHhHHhhH------hhhhccCccEEEEcccccccC-cc
Q psy13010 115 -DFKVVPYWGSPQERK--ILRQFWDMKNLHTKDASFHVVITSYQLVVSDF------KYFNRIKWQYLILDEAQAIKS-SS 184 (573)
Q Consensus 115 -~~~v~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~------~~l~~~~~~~vIiDE~h~~kn-~~ 184 (573)
...+..|+|.....+ .+.. .+.+|++|||+++.-.. ..+...++.+||+||+|.+++ ..
T Consensus 144 ~~v~~~~y~Gdt~~~~r~~~~~-----------~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~G 212 (851)
T COG1205 144 GKVTFGRYTGDTPPEERRAIIR-----------NPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQG 212 (851)
T ss_pred CcceeeeecCCCChHHHHHHHh-----------CCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccch
Confidence 467888998744322 2332 78899999999997621 223333589999999999965 44
Q ss_pred hHHHHHHHhcc--------cCcEEEEecc
Q psy13010 185 SMRWKLLLGFS--------CRNRLLLSGT 205 (573)
Q Consensus 185 s~~~~~~~~l~--------~~~~~lLTgT 205 (573)
|...-.++.|. ....++.|||
T Consensus 213 S~vA~llRRL~~~~~~~~~~~q~i~~SAT 241 (851)
T COG1205 213 SEVALLLRRLLRRLRRYGSPLQIICTSAT 241 (851)
T ss_pred hHHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 55555566552 2345777777
No 70
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.18 E-value=6.3e-10 Score=106.78 Aligned_cols=241 Identities=16% Similarity=0.140 Sum_probs=150.0
Q ss_pred ccCCCCchh--hhccHHHHHHHHHHHHHHHhC------CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcc
Q psy13010 29 VERPQPGLF--RGNLKHYQLKGMNWLANLYDQ------GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS 100 (573)
Q Consensus 29 ~~~~~p~~l--~~~L~~~Q~~~v~~l~~~~~~------~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~ 100 (573)
....+|..+ ...|.+-|+++|.|....... ..|-+|+|.+|.||--++.++|......+. .+++.|-+...
T Consensus 24 y~~~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr-~r~vwvS~s~d 102 (303)
T PF13872_consen 24 YRLHLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR-KRAVWVSVSND 102 (303)
T ss_pred cccCCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC-CceEEEECChh
Confidence 555777754 348999999999988766642 334499999999999999999998877654 35666666688
Q ss_pred cHHHHHHHHHHHCC-CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH-------hhhhc------
Q psy13010 101 TLHNWQQEMERFVP-DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF-------KYFNR------ 166 (573)
Q Consensus 101 l~~qW~~el~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~-------~~l~~------ 166 (573)
|...=.+++..-.. ...+..+..-+.. .....+..|+.+||+.+.... ..+.+
T Consensus 103 L~~Da~RDl~DIG~~~i~v~~l~~~~~~-------------~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g 169 (303)
T PF13872_consen 103 LKYDAERDLRDIGADNIPVHPLNKFKYG-------------DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCG 169 (303)
T ss_pred hhhHHHHHHHHhCCCcccceechhhccC-------------cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHh
Confidence 88877777765431 1222222221100 012245679999999987653 12222
Q ss_pred cCc-cEEEEcccccccCcch------HHHHHHHhcc----cCcEEEEeccCCCCCHHHHHHHHHh-hCC--CCCCChHHH
Q psy13010 167 IKW-QYLILDEAQAIKSSSS------MRWKLLLGFS----CRNRLLLSGTPIQNSMAELWALLHF-IMP--SMFDSHDEF 232 (573)
Q Consensus 167 ~~~-~~vIiDE~h~~kn~~s------~~~~~~~~l~----~~~~~lLTgTP~~n~~~el~~ll~~-L~~--~~~~~~~~f 232 (573)
-.| .+||+||+|..+|..+ ++..+...|+ .-+.+..|||... .+..+.-+-++ |+. .+|.+...|
T Consensus 170 ~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgas-ep~NmaYm~RLGLWG~gtpf~~~~~f 248 (303)
T PF13872_consen 170 EDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGAS-EPRNMAYMSRLGLWGPGTPFPDFDDF 248 (303)
T ss_pred cCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccC-CCceeeeeeeccccCCCCCCCCHHHH
Confidence 122 4899999999998654 5666766653 3468899999874 33443322222 121 134555666
Q ss_pred HHHHhhhhhhhhcccccccHHHHHHHHH--hhccceeeccccchhccCCCceEEEEEcCCCHHHHHHHHH
Q psy13010 233 NEWFSKDIESHAENKTSIDERHLSRLHM--ILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSA 300 (573)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~l~~~~~rr~k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~ 300 (573)
.+.+.+ + +......+.. .....+++|... +-..++..+.++||++|.++|+.
T Consensus 249 ~~a~~~----g-------Gv~amE~vA~dlKa~G~yiaR~LS-----f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 249 LEAMEK----G-------GVGAMEMVAMDLKARGMYIARQLS-----FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred HHHHHh----c-------CchHHHHHHHHHHhcchheeeecc-----cCCceEEEEEecCCHHHHHHhcC
Confidence 554432 1 1112222222 234555555433 34457889999999999999974
No 71
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.18 E-value=3.4e-09 Score=115.44 Aligned_cols=155 Identities=19% Similarity=0.160 Sum_probs=105.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHH-HHHHHHhhhc-CCC---CCEEEEcC-cccHHHHHHHHHHHC
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSI-AFLCHIAETY-DVW---GPFLIISP-ASTLHNWQQEMERFV 113 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~i-a~~~~~~~~~-~~~---~~~LIV~P-~~l~~qW~~el~~~~ 113 (573)
.|.|+|+.++-.+ ..|.+.|+..++|+|||..|+ .++..+...+ +.. =.+|.|.| +.|-..-.+.|..|.
T Consensus 22 ~~t~~Q~~a~~~i----~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~ 97 (814)
T COG1201 22 SLTPPQRYAIPEI----HSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPL 97 (814)
T ss_pred CCCHHHHHHHHHH----hCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHH
Confidence 7999999998644 469999999999999999984 6666666653 211 14799999 555445555555554
Q ss_pred --CCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhc--cCccEEEEcccccccC--cch
Q psy13010 114 --PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNR--IKWQYLILDEAQAIKS--SSS 185 (573)
Q Consensus 114 --~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~--~~~~~vIiDE~h~~kn--~~s 185 (573)
-+.++-+-+|.....+.-++ ...+++|+|||.+++.-... .+.. ..-..||+||.|.+.+ .++
T Consensus 98 ~~~G~~v~vRhGDT~~~er~r~---------~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~ 168 (814)
T COG1201 98 RELGIEVAVRHGDTPQSEKQKM---------LKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGV 168 (814)
T ss_pred HHcCCccceecCCCChHHhhhc---------cCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccch
Confidence 25667666776444333222 23788999999999865321 1211 1567899999999864 345
Q ss_pred HHHHHHHhcc---c-CcEEEEeccCC
Q psy13010 186 MRWKLLLGFS---C-RNRLLLSGTPI 207 (573)
Q Consensus 186 ~~~~~~~~l~---~-~~~~lLTgTP~ 207 (573)
+.+-.+..+. . -.|++||||=-
T Consensus 169 ~Lsl~LeRL~~l~~~~qRIGLSATV~ 194 (814)
T COG1201 169 QLALSLERLRELAGDFQRIGLSATVG 194 (814)
T ss_pred hhhhhHHHHHhhCcccEEEeehhccC
Confidence 5555555553 2 46899999954
No 72
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.18 E-value=9.3e-09 Score=105.79 Aligned_cols=144 Identities=15% Similarity=0.146 Sum_probs=86.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceEEeecCChhHHH--------HHH
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKVVPYWGSPQERK--------ILR 132 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~--------~~~ 132 (573)
.++..++|+|||..++..+...... ...+++++|+| ..++.|+.+.+..+++. .+..+++...... ...
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~-~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKS-QKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhh-CCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHH
Confidence 3778899999999988776665543 33468899999 88889999999988754 3443444322100 000
Q ss_pred HHhhh-cccccCCCCceEEEeehHhHHhhHhh--------hhccCccEEEEcccccccCcch-HHHHHHHhcc--cCcEE
Q psy13010 133 QFWDM-KNLHTKDASFHVVITSYQLVVSDFKY--------FNRIKWQYLILDEAQAIKSSSS-MRWKLLLGFS--CRNRL 200 (573)
Q Consensus 133 ~~~~~-~~~~~~~~~~~i~i~sy~~~~~~~~~--------l~~~~~~~vIiDE~h~~kn~~s-~~~~~~~~l~--~~~~~ 200 (573)
..... ..........+|+++|.+.+...... +......+||+||+|.+..... .....+..+. ....+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 00000 00001123457999999887543222 2223447899999999875322 1222222232 34679
Q ss_pred EEeccCC
Q psy13010 201 LLSGTPI 207 (573)
Q Consensus 201 lLTgTP~ 207 (573)
++|||+-
T Consensus 160 ~~SATlp 166 (358)
T TIGR01587 160 LMSATLP 166 (358)
T ss_pred EEecCch
Confidence 9999953
No 73
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.16 E-value=5.5e-09 Score=113.53 Aligned_cols=155 Identities=14% Similarity=0.166 Sum_probs=95.9
Q ss_pred hhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHH----------HHHHh--hhcCCCCCEEEEcC-cccHHH
Q psy13010 38 RGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAF----------LCHIA--ETYDVWGPFLIISP-ASTLHN 104 (573)
Q Consensus 38 ~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~----------~~~~~--~~~~~~~~~LIV~P-~~l~~q 104 (573)
+.+|++-|...-+.++..+.++...|+..++|+|||.++=-+ +..+. ......++++|++| ..++.|
T Consensus 158 ~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~q 237 (675)
T PHA02653 158 KIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRL 237 (675)
T ss_pred cccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHH
Confidence 348999999998888888888999999999999999874211 11111 10122358999999 666678
Q ss_pred HHHHHHHHC-----CCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEccccc
Q psy13010 105 WQQEMERFV-----PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQA 179 (573)
Q Consensus 105 W~~el~~~~-----~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~ 179 (573)
...++.+.. ++..+.+..|...+. ... ......++++.|..... ..+ .++.+||+||+|.
T Consensus 238 i~~~i~~~vg~~~~~g~~v~v~~Gg~~~~--~~~--------t~~k~~~Ilv~T~~L~l---~~L--~~v~~VVIDEaHE 302 (675)
T PHA02653 238 HSITLLKSLGFDEIDGSPISLKYGSIPDE--LIN--------TNPKPYGLVFSTHKLTL---NKL--FDYGTVIIDEVHE 302 (675)
T ss_pred HHHHHHHHhCccccCCceEEEEECCcchH--Hhh--------cccCCCCEEEEeCcccc---ccc--ccCCEEEcccccc
Confidence 888876543 234454444443321 000 01124478888743211 112 3678999999999
Q ss_pred ccCcchHHHHHHHhcc--cCcEEEEeccCC
Q psy13010 180 IKSSSSMRWKLLLGFS--CRNRLLLSGTPI 207 (573)
Q Consensus 180 ~kn~~s~~~~~~~~l~--~~~~~lLTgTP~ 207 (573)
...........++.+. -+..+++|||+-
T Consensus 303 r~~~~DllL~llk~~~~~~rq~ILmSATl~ 332 (675)
T PHA02653 303 HDQIGDIIIAVARKHIDKIRSLFLMTATLE 332 (675)
T ss_pred CccchhHHHHHHHHhhhhcCEEEEEccCCc
Confidence 8654433333333332 235799999973
No 74
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.08 E-value=1.7e-08 Score=110.45 Aligned_cols=69 Identities=10% Similarity=0.022 Sum_probs=61.6
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCC
Q psy13010 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGIL 564 (573)
Q Consensus 496 ~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~ 564 (573)
....|..++.+.+......+.++||||......+.+...|.+.|+++..++|+++.++|..+...|+..
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g 477 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG 477 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC
Confidence 345689999999988767899999999999999999999999999999999999999988888887754
No 75
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.08 E-value=1.4e-09 Score=119.74 Aligned_cols=165 Identities=15% Similarity=0.095 Sum_probs=114.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHC-CCce
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFV-PDFK 117 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~-~~~~ 117 (573)
.|++.|..++.- ...++.+.+++..+|+|||++|...+.....++ .++++.||| ++|..+=.+++.+|- -+.+
T Consensus 31 el~~~qq~av~~---~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEK---GLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhc---cccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 899999999853 333478899999999999999965555555443 369999999 888888888888442 2799
Q ss_pred EEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhc--cCccEEEEcccccccCcc------hHHHH
Q psy13010 118 VVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNR--IKWQYLILDEAQAIKSSS------SMRWK 189 (573)
Q Consensus 118 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~--~~~~~vIiDE~h~~kn~~------s~~~~ 189 (573)
|.++.|...... .....++|+|+||+.+.+..+.... ...++||+||+|.+.... +-..+
T Consensus 106 V~~~TgD~~~~~------------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r 173 (766)
T COG1204 106 VGISTGDYDLDD------------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVAR 173 (766)
T ss_pred EEEecCCcccch------------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHH
Confidence 999999765432 2237789999999999754333222 367899999999997651 22222
Q ss_pred HHHhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCC
Q psy13010 190 LLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMF 226 (573)
Q Consensus 190 ~~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~ 226 (573)
....-...+.+.||||--+ +.| +..||+....
T Consensus 174 ~~~~~~~~rivgLSATlpN--~~e---vA~wL~a~~~ 205 (766)
T COG1204 174 MRRLNELIRIVGLSATLPN--AEE---VADWLNAKLV 205 (766)
T ss_pred HHhhCcceEEEEEeeecCC--HHH---HHHHhCCccc
Confidence 2222123478999999433 333 4456654433
No 76
>PRK14701 reverse gyrase; Provisional
Probab=99.08 E-value=2.3e-08 Score=118.00 Aligned_cols=130 Identities=16% Similarity=0.299 Sum_probs=88.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC----
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP---- 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~---- 114 (573)
.+++.|..++..++. +...++..++|+|||...+.+....... + ..+|||+| ..|+.|..+.+..+..
T Consensus 79 ~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~~~-g--~~aLVl~PTreLa~Qi~~~l~~l~~~~~~ 151 (1638)
T PRK14701 79 EFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLALK-G--KKCYIILPTTLLVKQTVEKIESFCEKANL 151 (1638)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHHhc-C--CeEEEEECHHHHHHHHHHHHHHHHhhcCC
Confidence 588999999865544 6677888899999998433222222211 1 36899999 7888899999988653
Q ss_pred CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEccccccc
Q psy13010 115 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIK 181 (573)
Q Consensus 115 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~k 181 (573)
+.++..++|+-...+........ ..+.++|+|+|...+......+...+++++|+||+|.+-
T Consensus 152 ~v~v~~~~g~~s~~e~~~~~~~l-----~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 152 DVRLVYYHSNLRKKEKEEFLERI-----ENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred ceeEEEEeCCCCHHHHHHHHHHH-----hcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceecc
Confidence 35666677664332221111001 125688999999988766554544679999999999984
No 77
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=2.4e-08 Score=106.10 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=87.4
Q ss_pred EeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhhhccccc
Q psy13010 64 LADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHT 142 (573)
Q Consensus 64 l~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~ 142 (573)
|.-.+|+|||.+.+.++......+ +.+||++| ..+..|+.+.|.+.++ .++.++++.-...+....+....
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~~g---~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er~~~~~~~~---- 73 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLALG---KSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEKLQAWRKVK---- 73 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHHHHHHHHHH----
Confidence 455899999999887777666543 47899999 7788999999998874 56777777543333222222211
Q ss_pred CCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccC--cchHHHH-----HHH-hcccCcEEEEeccCCC
Q psy13010 143 KDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKS--SSSMRWK-----LLL-GFSCRNRLLLSGTPIQ 208 (573)
Q Consensus 143 ~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn--~~s~~~~-----~~~-~l~~~~~~lLTgTP~~ 208 (573)
.+..+|++.|.+.+.. .+ .+.++||+||.|...- .....+. .++ .......+++||||..
T Consensus 74 -~g~~~IVVGTrsalf~---p~--~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsl 141 (505)
T TIGR00595 74 -NGEILVVIGTRSALFL---PF--KNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSL 141 (505)
T ss_pred -cCCCCEEECChHHHcC---cc--cCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCH
Confidence 2567899999887642 22 3579999999998642 2222221 111 2245678999999874
No 78
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.05 E-value=1.1e-08 Score=107.58 Aligned_cols=161 Identities=17% Similarity=0.210 Sum_probs=112.3
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKV 118 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v 118 (573)
.+++-|.++|..+.+ +..+|.-..+|.||++. .-+-.+... |.+|||.| .+|+..=.+.+.... .++
T Consensus 17 ~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlC--yQiPAll~~----G~TLVVSPLiSLM~DQV~~l~~~G--i~A 84 (590)
T COG0514 17 SFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLC--YQIPALLLE----GLTLVVSPLISLMKDQVDQLEAAG--IRA 84 (590)
T ss_pred ccCCCHHHHHHHHHc----CCcEEEEccCCCCcchH--hhhHHHhcC----CCEEEECchHHHHHHHHHHHHHcC--cee
Confidence 689999999976655 68889999999999974 333333332 69999999 778877888887753 555
Q ss_pred EeecCC--hhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhh--HhhhhccCccEEEEcccccccC-------cchHH
Q psy13010 119 VPYWGS--PQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD--FKYFNRIKWQYLILDEAQAIKS-------SSSMR 187 (573)
Q Consensus 119 ~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~--~~~l~~~~~~~vIiDE~h~~kn-------~~s~~ 187 (573)
..++++ ..++..+... -..+..+++.++.+.+... .+.+...+..+++|||||-+.. .....
T Consensus 85 ~~lnS~l~~~e~~~v~~~-------l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~l 157 (590)
T COG0514 85 AYLNSTLSREERQQVLNQ-------LKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRL 157 (590)
T ss_pred ehhhcccCHHHHHHHHHH-------HhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHH
Confidence 555554 3344433332 2236789999999999765 4566678899999999998743 22333
Q ss_pred HHHHHhcccCcEEEEeccCCCCCHHHHHHHHH
Q psy13010 188 WKLLLGFSCRNRLLLSGTPIQNSMAELWALLH 219 (573)
Q Consensus 188 ~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~ 219 (573)
......+....++.||||-.+.--.|+-.+|.
T Consensus 158 g~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~ 189 (590)
T COG0514 158 GRLRAGLPNPPVLALTATATPRVRDDIREQLG 189 (590)
T ss_pred HHHHhhCCCCCEEEEeCCCChHHHHHHHHHhc
Confidence 33344444557899999977766666655554
No 79
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.04 E-value=2.9e-08 Score=106.41 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=54.4
Q ss_pred ccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcC
Q psy13010 497 DAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPG 562 (573)
Q Consensus 497 ~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~ 562 (573)
...|..+|.+++..+...+..+|||+......+.|...|...|+++..++|+.+..+|.-+..+|.
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~ii~~ag~ 520 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIVARAGQ 520 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHHHHHHcCC
Confidence 355899999999887767889999999999999999999999999999999976544444444433
No 80
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.03 E-value=5.5e-08 Score=106.53 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=64.6
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCC
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILT 565 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~ 565 (573)
..|..++.+.+.++.+.|.-|||||.+....+.|...|...||++..++|+.+.++|+.+...|+.+.
T Consensus 427 ~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~ 494 (896)
T PRK13104 427 ADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA 494 (896)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc
Confidence 45899999999999899999999999999999999999999999999999999999999999999884
No 81
>KOG0350|consensus
Probab=99.01 E-value=1.2e-08 Score=102.13 Aligned_cols=141 Identities=15% Similarity=0.168 Sum_probs=98.1
Q ss_pred hccHHHHHHHHHHHHHHHhC-----CCCeEEeCCCCCCHHHHH-HHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHH
Q psy13010 39 GNLKHYQLKGMNWLANLYDQ-----GINGILADEMGLGKTVQS-IAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMER 111 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~-----~~~~ll~de~G~GKT~~~-ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~ 111 (573)
..++|-|...+-|++.-+.. ++...++..+|+|||+.- |-++..+....-.+-+.+||+| ..|..|=.+.|.+
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred ccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 36899999999999776652 334588999999999863 3444444443333446799999 7777799999999
Q ss_pred HCCC--ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh---hhccCccEEEEcccccccCc
Q psy13010 112 FVPD--FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY---FNRIKWQYLILDEAQAIKSS 183 (573)
Q Consensus 112 ~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~---l~~~~~~~vIiDE~h~~kn~ 183 (573)
|.++ +.|....|...-++-.++. .........||+++|...+...... |.--+-.++|+||+.++.+.
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~qL----~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~q 310 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQL----ASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQ 310 (620)
T ss_pred hccCCceEEEecccccchHHHHHHH----hcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHH
Confidence 9976 5555566655544444443 1223334679999999998776542 33335678999999998764
No 82
>KOG0328|consensus
Probab=98.97 E-value=2.1e-08 Score=93.31 Aligned_cols=150 Identities=19% Similarity=0.166 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHH-HHHHHHHhhhcCCCCCEEEEcCcc-cHHHHHHHHHHHCC--CceE
Q psy13010 43 HYQLKGMNWLANLYDQGINGILADEMGLGKTVQS-IAFLCHIAETYDVWGPFLIISPAS-TLHNWQQEMERFVP--DFKV 118 (573)
Q Consensus 43 ~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~-ia~~~~~~~~~~~~~~~LIV~P~~-l~~qW~~el~~~~~--~~~v 118 (573)
.-|..|+--+ -++...|.-...|+|||.+- ++++..+.-. ...-.+||+.|.. +..|-.+-+.-... +..+
T Consensus 52 ~IQqrAi~~I----lkGrdViaQaqSGTGKTa~~si~vlq~~d~~-~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~ 126 (400)
T KOG0328|consen 52 AIQQRAIPQI----LKGRDVIAQAQSGTGKTATFSISVLQSLDIS-VRETQALILSPTRELAVQIQKVILALGDYMNVQC 126 (400)
T ss_pred HHHhhhhhhh----hcccceEEEecCCCCceEEEEeeeeeecccc-cceeeEEEecChHHHHHHHHHHHHHhcccccceE
Confidence 3455555333 34777888899999999763 3444333222 1123579999944 44455444444332 3566
Q ss_pred EeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhh--HhhhhccCccEEEEcccccccC--cchHHHHHHHhc
Q psy13010 119 VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD--FKYFNRIKWQYLILDEAQAIKS--SSSMRWKLLLGF 194 (573)
Q Consensus 119 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~--~~~l~~~~~~~vIiDE~h~~kn--~~s~~~~~~~~l 194 (573)
..+.|.+.-.+.++.. ....+++.-|..++-.. ...|.-....++|+||+..+-| ...++|...+.+
T Consensus 127 hacigg~n~gedikkl---------d~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~l 197 (400)
T KOG0328|consen 127 HACIGGKNLGEDIKKL---------DYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYL 197 (400)
T ss_pred EEEecCCccchhhhhh---------cccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhC
Confidence 6667777666656543 13445666666666443 3456666789999999998855 446777777777
Q ss_pred c-cCcEEEEeccC
Q psy13010 195 S-CRNRLLLSGTP 206 (573)
Q Consensus 195 ~-~~~~~lLTgTP 206 (573)
. ....+++|||.
T Consensus 198 p~~~Qvv~~SATl 210 (400)
T KOG0328|consen 198 PPGAQVVLVSATL 210 (400)
T ss_pred CCCceEEEEeccC
Confidence 5 55677888883
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.96 E-value=1.3e-08 Score=112.18 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=104.1
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCce
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFK 117 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~ 117 (573)
..|.++|.+++..+.+.. .....++...+|+|||...+.++......+ +.+||++| ..+..||.+.+.+.++ .+
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g---~~vLvLvPt~~L~~Q~~~~l~~~fg-~~ 217 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG---KQALVLVPEIALTPQMLARFRARFG-AP 217 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHhC-CC
Confidence 369999999998775533 345578899999999999887776665542 47899999 7788999999998874 57
Q ss_pred EEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCc--chHHH--HHH--
Q psy13010 118 VVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSS--SSMRW--KLL-- 191 (573)
Q Consensus 118 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~--~s~~~--~~~-- 191 (573)
+.+++|.-...+....+... ..+..+|+|.|.+.+.. .-.+.++||+||+|...-. ....+ +.+
T Consensus 218 v~~~~s~~s~~~r~~~~~~~-----~~g~~~IVVgTrsal~~-----p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~ 287 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKA-----KRGEAKVVIGARSALFL-----PFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAV 287 (679)
T ss_pred EEEEECCCCHHHHHHHHHHH-----HcCCCCEEEeccHHhcc-----cccCCCEEEEECCCccccccCcCCCCcHHHHHH
Confidence 77777754333222221111 12557899999876531 1235789999999986422 11111 111
Q ss_pred -Hh-cccCcEEEEeccCCC
Q psy13010 192 -LG-FSCRNRLLLSGTPIQ 208 (573)
Q Consensus 192 -~~-l~~~~~~lLTgTP~~ 208 (573)
+. ......+++||||-.
T Consensus 288 ~ra~~~~~~~il~SATps~ 306 (679)
T PRK05580 288 VRAKLENIPVVLGSATPSL 306 (679)
T ss_pred HHhhccCCCEEEEcCCCCH
Confidence 11 234568999999864
No 84
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.95 E-value=4.3e-07 Score=87.19 Aligned_cols=146 Identities=21% Similarity=0.205 Sum_probs=110.0
Q ss_pred hhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCc
Q psy13010 38 RGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDF 116 (573)
Q Consensus 38 ~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~ 116 (573)
.++|.|+|+.+-+-++..+.+....|+-.-+|.|||=++...+......+ +.+.|..| ..++..-...|..-|++.
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G---~~vciASPRvDVclEl~~Rlk~aF~~~ 171 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG---GRVCIASPRVDVCLELYPRLKQAFSNC 171 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC---CeEEEecCcccchHHHHHHHHHhhccC
Confidence 45999999999999998888888889999999999999999999888875 47899999 667777777787777888
Q ss_pred eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccc--cCcchHHHHHHHhc
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI--KSSSSMRWKLLLGF 194 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~--kn~~s~~~~~~~~l 194 (573)
.+..++|...+.- ...-|+-|++..++-. -.||++|+||+..+ .+..+. ..++++-
T Consensus 172 ~I~~Lyg~S~~~f---------------r~plvVaTtHQLlrFk------~aFD~liIDEVDAFP~~~d~~L-~~Av~~a 229 (441)
T COG4098 172 DIDLLYGDSDSYF---------------RAPLVVATTHQLLRFK------QAFDLLIIDEVDAFPFSDDQSL-QYAVKKA 229 (441)
T ss_pred CeeeEecCCchhc---------------cccEEEEehHHHHHHH------hhccEEEEeccccccccCCHHH-HHHHHHh
Confidence 8877776544321 1234667777777544 26899999999987 232333 3334433
Q ss_pred -c-cCcEEEEeccCCC
Q psy13010 195 -S-CRNRLLLSGTPIQ 208 (573)
Q Consensus 195 -~-~~~~~lLTgTP~~ 208 (573)
+ ...++.|||||..
T Consensus 230 rk~~g~~IylTATp~k 245 (441)
T COG4098 230 RKKEGATIYLTATPTK 245 (441)
T ss_pred hcccCceEEEecCChH
Confidence 2 4468999999975
No 85
>COG4889 Predicted helicase [General function prediction only]
Probab=98.93 E-value=2e-09 Score=113.80 Aligned_cols=172 Identities=19% Similarity=0.151 Sum_probs=110.2
Q ss_pred CCccCCCCchhhhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHH
Q psy13010 27 TEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNW 105 (573)
Q Consensus 27 ~~~~~~~p~~l~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW 105 (573)
.+...++|..=+..|+|||..|+....+.+..+.+|-|...+|+|||.+++-+...+... .+|.++| .+|+.|-
T Consensus 148 ~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~~-----~iL~LvPSIsLLsQT 222 (1518)
T COG4889 148 TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAAA-----RILFLVPSISLLSQT 222 (1518)
T ss_pred cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhhh-----heEeecchHHHHHHH
Confidence 344556666656689999999999888888877788666679999999999999988874 7899999 6777775
Q ss_pred HHHHHHHC--CCceEEeecCCh-------------------hHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--
Q psy13010 106 QQEMERFV--PDFKVVPYWGSP-------------------QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK-- 162 (573)
Q Consensus 106 ~~el~~~~--~~~~v~~~~g~~-------------------~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~-- 162 (573)
.+|..... +--...|+..++ ..+..+....+.. ...+--||.+||..+..-..
T Consensus 223 lrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~----k~~~~~vvFsTYQSl~~i~eAQ 298 (1518)
T COG4889 223 LREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQ----KANGLTVVFSTYQSLPRIKEAQ 298 (1518)
T ss_pred HHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhh----ccCCcEEEEEcccchHHHHHHH
Confidence 44442221 111223333222 1122222221111 23455689999998865432
Q ss_pred hhhccCccEEEEcccccccCcc------hHH--HHHHHhcccCcEEEEeccCC
Q psy13010 163 YFNRIKWQYLILDEAQAIKSSS------SMR--WKLLLGFSCRNRLLLSGTPI 207 (573)
Q Consensus 163 ~l~~~~~~~vIiDE~h~~kn~~------s~~--~~~~~~l~~~~~~lLTgTP~ 207 (573)
..---+|++||+||+|+-.+.. |.. ...-..+++.+|+-+||||-
T Consensus 299 e~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPk 351 (1518)
T COG4889 299 EAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPK 351 (1518)
T ss_pred HcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCch
Confidence 3333579999999999964311 111 11122335678899999994
No 86
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=98.92 E-value=5.6e-08 Score=104.94 Aligned_cols=66 Identities=21% Similarity=0.183 Sum_probs=59.7
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCC
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILT 565 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~ 565 (573)
..|..++.+.+.+....|..|||||......+.|...|.+.|+++..++|+ ..+|++.+-.|...+
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~ 453 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRK 453 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCC
Confidence 358888989888888889999999999999999999999999999999999 669999999997654
No 87
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=98.90 E-value=1.7e-07 Score=109.05 Aligned_cols=139 Identities=17% Similarity=0.112 Sum_probs=84.5
Q ss_pred eCCCCCCHHHHHHH-HHHHHhhhc---------CCCCCEEEEcC-cccHHHHHHHHHH-----------H---CCCceEE
Q psy13010 65 ADEMGLGKTVQSIA-FLCHIAETY---------DVWGPFLIISP-ASTLHNWQQEMER-----------F---VPDFKVV 119 (573)
Q Consensus 65 ~de~G~GKT~~~ia-~~~~~~~~~---------~~~~~~LIV~P-~~l~~qW~~el~~-----------~---~~~~~v~ 119 (573)
...+|+|||+.+.. ++..+.... .....+|+|+| +.|..|=.+.++. + .++.++.
T Consensus 2 ~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~ 81 (1490)
T PRK09751 2 IAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVG 81 (1490)
T ss_pred cCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEE
Confidence 56899999999854 566655431 11246899999 6665554444432 1 1357888
Q ss_pred eecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh---hhccCccEEEEcccccccCc--chHHHHHHHhc
Q psy13010 120 PYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY---FNRIKWQYLILDEAQAIKSS--SSMRWKLLLGF 194 (573)
Q Consensus 120 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~---l~~~~~~~vIiDE~h~~kn~--~s~~~~~~~~l 194 (573)
+++|.....+..+.. ...++|+|||++.+...... ..-...++||+||+|.+.+. ++.....+..|
T Consensus 82 vrtGDt~~~eR~rll---------~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL 152 (1490)
T PRK09751 82 IRTGDTPAQERSKLT---------RNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERL 152 (1490)
T ss_pred EEECCCCHHHHHHHh---------cCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHH
Confidence 888865443322211 14678999999998654221 11135689999999999753 23322233333
Q ss_pred -----ccCcEEEEeccCCCCCHHHH
Q psy13010 195 -----SCRNRLLLSGTPIQNSMAEL 214 (573)
Q Consensus 195 -----~~~~~~lLTgTP~~n~~~el 214 (573)
....+|+||||--+ +.++
T Consensus 153 ~~l~~~~~QrIgLSATI~n--~eev 175 (1490)
T PRK09751 153 DALLHTSAQRIGLSATVRS--ASDV 175 (1490)
T ss_pred HHhCCCCCeEEEEEeeCCC--HHHH
Confidence 23468999999743 4443
No 88
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.89 E-value=2.3e-07 Score=101.54 Aligned_cols=69 Identities=19% Similarity=0.121 Sum_probs=65.1
Q ss_pred ccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCC
Q psy13010 497 DAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILT 565 (573)
Q Consensus 497 ~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~ 565 (573)
...|..++.+.|.++.+.|..|||||......++|...|...|+++..++|+.+..+|+.+...|+.+.
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~ 499 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA 499 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc
Confidence 356899999999999999999999999999999999999999999999999999999999999999876
No 89
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.86 E-value=2.1e-07 Score=101.88 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=61.3
Q ss_pred ccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCC
Q psy13010 497 DAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTH 566 (573)
Q Consensus 497 ~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~ 566 (573)
...|..++.+.+.+....|..|||||......+.|...|...|+++..++|+ ..+|++.+..|...+.
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g 479 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPG 479 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCc
Confidence 3459999999999888889999999999999999999999999999999996 6699999999987653
No 90
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.85 E-value=2.2e-07 Score=94.78 Aligned_cols=169 Identities=14% Similarity=0.098 Sum_probs=109.0
Q ss_pred CCCccCCCCchhhh--------ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHH-HHHHHHHhhhcCCCCCEEEE
Q psy13010 26 STEVERPQPGLFRG--------NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQS-IAFLCHIAETYDVWGPFLII 96 (573)
Q Consensus 26 ~~~~~~~~p~~l~~--------~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~-ia~~~~~~~~~~~~~~~LIV 96 (573)
....++.+|..++. .|.|-|.-+|. +-+-.|.+-++...+++|||+++ +|-+..+... .+++|.+
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe---~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~---g~KmlfL 267 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVE---AGLLEGENLLVVSATASGKTLIGELAGIPRLLSG---GKKMLFL 267 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhh---hccccCCceEEEeccCCCcchHHHhhCcHHHHhC---CCeEEEE
Confidence 34456788888864 58899999985 44556777899999999999987 4545555443 2689999
Q ss_pred cC-cccHHHHHHHHHHHCCC--ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh-hhccCccEE
Q psy13010 97 SP-ASTLHNWQQEMERFVPD--FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY-FNRIKWQYL 172 (573)
Q Consensus 97 ~P-~~l~~qW~~el~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~-l~~~~~~~v 172 (573)
+| ..+..|=.++|.+-+.. +++-+-.|....++.- ..-......++||++-||+-+.-.... -.-.+.+.|
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~-----~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtV 342 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTRE-----EPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTV 342 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccC-----CccccCCCCCCcEEEeechhHHHHHHcCCcccccceE
Confidence 99 66667777888665433 5554555655443321 001134568899999999988433222 112357899
Q ss_pred EEcccccccCcc--h---HHHHHHHhcc-cCcEEEEecc
Q psy13010 173 ILDEAQAIKSSS--S---MRWKLLLGFS-CRNRLLLSGT 205 (573)
Q Consensus 173 IiDE~h~~kn~~--s---~~~~~~~~l~-~~~~~lLTgT 205 (573)
|+||.|.+.... . ....-++.+- ....+.||||
T Consensus 343 VIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSAT 381 (830)
T COG1202 343 VIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSAT 381 (830)
T ss_pred EeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEee
Confidence 999999997622 1 1122233332 2456778887
No 91
>KOG0343|consensus
Probab=98.84 E-value=9.1e-08 Score=96.95 Aligned_cols=155 Identities=19% Similarity=0.203 Sum_probs=96.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHH-HHHHHHhhh---cCCCCCEEEEcC-cccHHHHHHHHHHHC-
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSI-AFLCHIAET---YDVWGPFLIISP-ASTLHNWQQEMERFV- 113 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~i-a~~~~~~~~---~~~~~~~LIV~P-~~l~~qW~~el~~~~- 113 (573)
.+..-|...|-..+. |...|=+..+|+|||+.-+ -++..++.. ...--..|||.| ..|..|-.+-|.+-.
T Consensus 91 ~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred cHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 577788888864433 6666778899999997532 233333332 111124799999 556667665554432
Q ss_pred -CCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh---hhhccCccEEEEcccccccCcc-hHHH
Q psy13010 114 -PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK---YFNRIKWQYLILDEAQAIKSSS-SMRW 188 (573)
Q Consensus 114 -~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~---~l~~~~~~~vIiDE~h~~kn~~-s~~~ 188 (573)
..+..-.+.|..+-..-..+. ....|++||...+-...+ .|....-.++|+|||.++-..+ ..+.
T Consensus 167 ~h~fSaGLiiGG~~~k~E~eRi----------~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL 236 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVKFELERI----------SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTL 236 (758)
T ss_pred ccccccceeecCchhHHHHHhh----------hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHH
Confidence 234554444544433322222 667899999998865443 4555678899999999987654 2223
Q ss_pred HHH-Hhc-ccCcEEEEeccCCC
Q psy13010 189 KLL-LGF-SCRNRLLLSGTPIQ 208 (573)
Q Consensus 189 ~~~-~~l-~~~~~~lLTgTP~~ 208 (573)
.++ ..+ ..+..+|+|||+..
T Consensus 237 ~~Ii~~lP~~RQTLLFSATqt~ 258 (758)
T KOG0343|consen 237 NAIIENLPKKRQTLLFSATQTK 258 (758)
T ss_pred HHHHHhCChhheeeeeecccch
Confidence 333 233 35567999999876
No 92
>PRK09694 helicase Cas3; Provisional
Probab=98.84 E-value=7.9e-07 Score=99.39 Aligned_cols=164 Identities=15% Similarity=0.119 Sum_probs=96.1
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHH----HCC
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMER----FVP 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~----~~~ 114 (573)
.++|+|..+.+. ...++-.||-..||.|||-.|+.++..+...+. .+.+++..| ..+..+-.+.+.+ .++
T Consensus 286 ~p~p~Q~~~~~~----~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~-~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~ 360 (878)
T PRK09694 286 QPRQLQTLVDAL----PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL-ADSIIFALPTQATANAMLSRLEALASKLFP 360 (878)
T ss_pred CChHHHHHHHhh----ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-CCeEEEECcHHHHHHHHHHHHHHHHHHhcC
Confidence 689999987431 123444588999999999999988887776533 357899999 4455566565543 445
Q ss_pred CceEEeecCChhHHHHHHHHhhhc-c-----------------cccCCCCceEEEeehHhHHhhH-----hhhh--ccCc
Q psy13010 115 DFKVVPYWGSPQERKILRQFWDMK-N-----------------LHTKDASFHVVITSYQLVVSDF-----KYFN--RIKW 169 (573)
Q Consensus 115 ~~~v~~~~g~~~~~~~~~~~~~~~-~-----------------~~~~~~~~~i~i~sy~~~~~~~-----~~l~--~~~~ 169 (573)
...+...+|............... + ..+..--.+|+++|.+.+-.-. ..+. ...-
T Consensus 361 ~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~ 440 (878)
T PRK09694 361 SPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGR 440 (878)
T ss_pred CCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhcc
Confidence 566777776543211111110000 0 0011122578898888765321 1111 1223
Q ss_pred cEEEEcccccccCcchHH-HHHHHhcc--cCcEEEEeccCCC
Q psy13010 170 QYLILDEAQAIKSSSSMR-WKLLLGFS--CRNRLLLSGTPIQ 208 (573)
Q Consensus 170 ~~vIiDE~h~~kn~~s~~-~~~~~~l~--~~~~~lLTgTP~~ 208 (573)
.+|||||+|.+-...+.. ...++.+. ....++||||+-.
T Consensus 441 svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~ 482 (878)
T PRK09694 441 SVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPA 482 (878)
T ss_pred CeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCH
Confidence 489999999984433322 22333322 3568999999744
No 93
>KOG0345|consensus
Probab=98.83 E-value=5.2e-07 Score=90.04 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=90.4
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHh-hhcCC--CC--CEEEEcCc-ccHHH---HHHHHH
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIA-ETYDV--WG--PFLIISPA-STLHN---WQQEME 110 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~-~~~~~--~~--~~LIV~P~-~l~~q---W~~el~ 110 (573)
.+.|-|..++-.++. +....+-..+|+|||+.-+.=+..+. ..... ++ ..|||+|. .|..| =...|.
T Consensus 28 ~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~ 103 (567)
T KOG0345|consen 28 KMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFL 103 (567)
T ss_pred ccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHH
Confidence 578889999865544 77788888999999986544333333 22111 22 46999994 34444 345566
Q ss_pred HHCCCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh----hhhccCccEEEEcccccccCcc
Q psy13010 111 RFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK----YFNRIKWQYLILDEAQAIKSSS 184 (573)
Q Consensus 111 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~----~l~~~~~~~vIiDE~h~~kn~~ 184 (573)
.+++++....+.|+..-.+.+..+.. ....|+|.|...+..-.. .+.-..-.++|+|||.++-..+
T Consensus 104 ~~l~~l~~~l~vGG~~v~~Di~~fke--------e~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmg 173 (567)
T KOG0345|consen 104 EHLPNLNCELLVGGRSVEEDIKTFKE--------EGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMG 173 (567)
T ss_pred HhhhccceEEEecCccHHHHHHHHHH--------hCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhccc
Confidence 66788999899998777777766533 344699999987755432 2443456799999999986654
No 94
>KOG0335|consensus
Probab=98.83 E-value=1.4e-07 Score=95.83 Aligned_cols=130 Identities=17% Similarity=0.224 Sum_probs=88.7
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHH-HHHHHHhhhcC---------CCCCEEEEcC-cccHHHHHHH
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSI-AFLCHIAETYD---------VWGPFLIISP-ASTLHNWQQE 108 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~i-a~~~~~~~~~~---------~~~~~LIV~P-~~l~~qW~~e 108 (573)
.+.|.|+.++. ....+++.+.+.++|+|||..-+ -++..++.... .....||++| ..|+.|=.+|
T Consensus 96 ~ptpvQk~sip----~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ne 171 (482)
T KOG0335|consen 96 KPTPVQKYSIP----IISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNE 171 (482)
T ss_pred CCCcceeeccc----eeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHH
Confidence 57888999885 34558888999999999998653 44455554422 1235799999 7888899999
Q ss_pred HHHHCCC--ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccC
Q psy13010 109 MERFVPD--FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKS 182 (573)
Q Consensus 109 l~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn 182 (573)
.+++... .+.++.+|..+.....+. ....++|+++|...+....+ .+.--...++|+||+.++-.
T Consensus 172 a~k~~~~s~~~~~~~ygg~~~~~q~~~---------~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD 240 (482)
T KOG0335|consen 172 ARKFSYLSGMKSVVVYGGTDLGAQLRF---------IKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLD 240 (482)
T ss_pred HHhhcccccceeeeeeCCcchhhhhhh---------hccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhh
Confidence 9888643 555444444333333332 23788999999998865432 23233445999999999855
No 95
>KOG0333|consensus
Probab=98.75 E-value=5.9e-07 Score=90.76 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=60.7
Q ss_pred ccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCC
Q psy13010 497 DAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGIL 564 (573)
Q Consensus 497 ~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~ 564 (573)
.+.|...|+++|++. ....+|||.+.....|+|...|.+.|+.+++++|+-++++|+.++..|+++
T Consensus 501 ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~ 566 (673)
T KOG0333|consen 501 EDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREG 566 (673)
T ss_pred chHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhc
Confidence 466889999999874 467899999999999999999999999999999999999999999999974
No 96
>KOG4284|consensus
Probab=98.74 E-value=1.3e-07 Score=97.43 Aligned_cols=138 Identities=15% Similarity=0.195 Sum_probs=92.6
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc-ccHHHHHHHHHHHCC---CceEEeecCChhHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA-STLHNWQQEMERFVP---DFKVVPYWGSPQERKILRQF 134 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~-~l~~qW~~el~~~~~---~~~v~~~~g~~~~~~~~~~~ 134 (573)
+..-|+-.-.|+|||++-..+....+......-..+||+|. .+.-|-.+-+.+..| +++.-+|.|+........++
T Consensus 62 kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl 141 (980)
T KOG4284|consen 62 KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL 141 (980)
T ss_pred ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh
Confidence 44558889999999986432222222222222357999994 444566666666554 68898998876655554443
Q ss_pred hhhcccccCCCCceEEEeehHhHHhh--HhhhhccCccEEEEcccccccCcchH---HHHHHHhc-ccCcEEEEeccC
Q psy13010 135 WDMKNLHTKDASFHVVITSYQLVVSD--FKYFNRIKWQYLILDEAQAIKSSSSM---RWKLLLGF-SCRNRLLLSGTP 206 (573)
Q Consensus 135 ~~~~~~~~~~~~~~i~i~sy~~~~~~--~~~l~~~~~~~vIiDE~h~~kn~~s~---~~~~~~~l-~~~~~~lLTgTP 206 (573)
....|+|-|...+.-. .+.+.-...+++|+||+..+-...|. ..+.+..| +.+..+.+|||-
T Consensus 142 ----------k~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATY 209 (980)
T KOG4284|consen 142 ----------KQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATY 209 (980)
T ss_pred ----------hhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccC
Confidence 5556999999988764 35677778899999999988665543 34445555 456678888883
No 97
>KOG0340|consensus
Probab=98.67 E-value=2.3e-06 Score=82.62 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=62.5
Q ss_pred cccHHHHHHHHHHHHh-CCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEE
Q psy13010 498 AGKLSVLDDLLKRLKA-SGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVG 570 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~-~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~ 570 (573)
..|=.++..++.+..+ ++..++||+|-+.+-..|...|+..++.+..++|.+++++|.+++.+|+... .+++
T Consensus 236 ~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~-~~il 308 (442)
T KOG0340|consen 236 DVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNA-ARIL 308 (442)
T ss_pred hhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcC-ccEE
Confidence 3466688888887766 5779999999999999999999999999999999999999999999999764 3444
No 98
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.66 E-value=3.3e-06 Score=94.39 Aligned_cols=56 Identities=14% Similarity=0.079 Sum_probs=48.3
Q ss_pred CCeEEEEecchhHHHHHHHHHHh---CCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 515 GHRVLVYSQMTKMIDLLEEFMVY---RKYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 515 ~~KvlIFsq~~~~l~~l~~~L~~---~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
+.++|||..-...+..+.+.|.. .++.++.++|+++.++|.++++.|.++. .+|+|
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~-rkVlV 267 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGR-RKVVL 267 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCC-eEEEE
Confidence 45799999999999999999987 4899999999999999999999998764 45543
No 99
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.64 E-value=4.8e-06 Score=93.24 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=48.6
Q ss_pred CCeEEEEecchhHHHHHHHHHHh---CCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 515 GHRVLVYSQMTKMIDLLEEFMVY---RKYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 515 ~~KvlIFsq~~~~l~~l~~~L~~---~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
+.++|||..-...+..+.+.|.. .++.+..++|+++.++|.+++..|.++. .+|++
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~-rkVlv 270 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGR-RKVVL 270 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCC-eEEEE
Confidence 56899999999999999999987 6899999999999999999999998653 45543
No 100
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.62 E-value=5.9e-07 Score=99.99 Aligned_cols=159 Identities=21% Similarity=0.305 Sum_probs=109.9
Q ss_pred hhhhccHHHHHHHHHHHHHHHhCCCCe--EEeCCCCCCHHHHHH-HHHHHHhhhcCCCCCEEEEcCcccHH-HHHHHHHH
Q psy13010 36 LFRGNLKHYQLKGMNWLANLYDQGING--ILADEMGLGKTVQSI-AFLCHIAETYDVWGPFLIISPASTLH-NWQQEMER 111 (573)
Q Consensus 36 ~l~~~L~~~Q~~~v~~l~~~~~~~~~~--ll~de~G~GKT~~~i-a~~~~~~~~~~~~~~~LIV~P~~l~~-qW~~el~~ 111 (573)
.|.-.-.|-|+.+++-+.+=+.++... +||-++|.|||=+|+ |.....+.. +-+.|+||..++- |-.+-|.+
T Consensus 590 ~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G----KQVAvLVPTTlLA~QHy~tFke 665 (1139)
T COG1197 590 SFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG----KQVAVLVPTTLLAQQHYETFKE 665 (1139)
T ss_pred cCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC----CeEEEEcccHHhHHHHHHHHHH
Confidence 344467889999999887766655543 999999999999886 333333332 4789999966665 67777765
Q ss_pred HCCCceEE--eec---CChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchH
Q psy13010 112 FVPDFKVV--PYW---GSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSM 186 (573)
Q Consensus 112 ~~~~~~v~--~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~ 186 (573)
-|.++.|- ++. +.+..+..+.. -..+..||+|-|+..+.++...- +-+++|+||=|+|+=.
T Consensus 666 RF~~fPV~I~~LSRF~s~kE~~~il~~--------la~G~vDIvIGTHrLL~kdv~Fk---dLGLlIIDEEqRFGVk--- 731 (1139)
T COG1197 666 RFAGFPVRIEVLSRFRSAKEQKEILKG--------LAEGKVDIVIGTHRLLSKDVKFK---DLGLLIIDEEQRFGVK--- 731 (1139)
T ss_pred HhcCCCeeEEEecccCCHHHHHHHHHH--------HhcCCccEEEechHhhCCCcEEe---cCCeEEEechhhcCcc---
Confidence 55454443 332 23333333333 23388999999999987764322 4589999999999543
Q ss_pred HHHHHHhccc-CcEEEEeccCCCCCHH
Q psy13010 187 RWKLLLGFSC-RNRLLLSGTPIQNSMA 212 (573)
Q Consensus 187 ~~~~~~~l~~-~~~~lLTgTP~~n~~~ 212 (573)
.-..++.+++ -..+-|||||++.++.
T Consensus 732 ~KEkLK~Lr~~VDvLTLSATPIPRTL~ 758 (1139)
T COG1197 732 HKEKLKELRANVDVLTLSATPIPRTLN 758 (1139)
T ss_pred HHHHHHHHhccCcEEEeeCCCCcchHH
Confidence 4556777754 5789999999998855
No 101
>KOG0338|consensus
Probab=98.59 E-value=1.3e-06 Score=87.97 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 502 ~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
..|..++.... .++++||.+-..+..-|.-.|-..|+....++|++++.+|.+.+..|++.. +.|++
T Consensus 415 a~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~e-idvLi 481 (691)
T KOG0338|consen 415 AMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEE-IDVLI 481 (691)
T ss_pred HHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhcc-CCEEE
Confidence 34556666544 678999999999999999999999999999999999999999999999764 44443
No 102
>KOG0342|consensus
Probab=98.56 E-value=3.7e-06 Score=84.62 Aligned_cols=67 Identities=16% Similarity=0.272 Sum_probs=59.8
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCC
Q psy13010 499 GKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTH 566 (573)
Q Consensus 499 ~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~ 566 (573)
.++..+..++++...+ .||+||+....+..++.+.|....+++..|+|+.++..|.....+|.+...
T Consensus 315 ~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaes 381 (543)
T KOG0342|consen 315 SRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAES 381 (543)
T ss_pred chHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhccc
Confidence 3567788888876533 899999999999999999999999999999999999999999999998764
No 103
>KOG0339|consensus
Probab=98.54 E-value=1.2e-05 Score=81.21 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=56.5
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCC
Q psy13010 499 GKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILT 565 (573)
Q Consensus 499 ~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~ 565 (573)
.|+.+|..-+-+..+.| |||||..=....+-|...|..+|+.+..++|.+.+.+|.+++.+|+...
T Consensus 453 ~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~ 518 (731)
T KOG0339|consen 453 KKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKR 518 (731)
T ss_pred HHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcC
Confidence 36666665555544444 8999999999999999999999999999999999999999999999774
No 104
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.54 E-value=1.6e-06 Score=96.12 Aligned_cols=144 Identities=13% Similarity=0.187 Sum_probs=94.2
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHH-HHHHHHH-----HHC----CC--ceEEeecCChhH-
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLH-NWQQEME-----RFV----PD--FKVVPYWGSPQE- 127 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~-qW~~el~-----~~~----~~--~~v~~~~g~~~~- 127 (573)
...+..++|+|||.+++..|..+....+. ..+|||||...+. ...+-+. .+| ++ .++.+|.+.++.
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~~~-~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKYGL-FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 55788899999999999999999887554 6889999965443 3433322 233 22 566677654311
Q ss_pred ------HHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh------hh--hc--cC-------ccEEEEcccccccCcc
Q psy13010 128 ------RKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK------YF--NR--IK-------WQYLILDEAQAIKSSS 184 (573)
Q Consensus 128 ------~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~------~l--~~--~~-------~~~vIiDE~h~~kn~~ 184 (573)
...++.+....+ .......|+++|-+.+.++.. .+ .. .. -.+||+||+|++.. .
T Consensus 140 ~gr~~~~~~i~~Fa~~~~--~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~ 216 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASR--QNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-D 216 (986)
T ss_pred cccccChHHHHHHHhccc--cCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-c
Confidence 223333321110 112357899999998876421 11 11 12 24799999999965 3
Q ss_pred hHHHHHHHhcccCcEEEEeccCCC
Q psy13010 185 SMRWKLLLGFSCRNRLLLSGTPIQ 208 (573)
Q Consensus 185 s~~~~~~~~l~~~~~~lLTgTP~~ 208 (573)
...++++..+...+++..|||--.
T Consensus 217 ~k~~~~i~~lnpl~~lrysAT~~~ 240 (986)
T PRK15483 217 NKFYQAIEALKPQMIIRFGATFPD 240 (986)
T ss_pred hHHHHHHHhcCcccEEEEeeecCC
Confidence 457888999999999999999644
No 105
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.51 E-value=4.8e-06 Score=91.06 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=61.2
Q ss_pred ccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCC
Q psy13010 497 DAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILT 565 (573)
Q Consensus 497 ~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~ 565 (573)
...|..++.+.+.+....|..|||||.+....+.|...|.+.|+++..++|+....+++-+...|+.+.
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~ 490 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA 490 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce
Confidence 345889999999888788999999999999999999999999999999999999777877777777654
No 106
>KOG0336|consensus
Probab=98.51 E-value=2.1e-05 Score=77.30 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=62.1
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEE
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVG 570 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~ 570 (573)
+.|+..+..+++++ ..++|+|||+...-++|.|..-|...||..--++|.-.+..|+.+++.|+.+. ++++
T Consensus 449 ~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~-vrIL 519 (629)
T KOG0336|consen 449 SEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGE-VRIL 519 (629)
T ss_pred HHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCc-eEEE
Confidence 45777777777765 57889999999999999999999999999999999999999999999999875 4554
No 107
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.50 E-value=1.3e-06 Score=85.76 Aligned_cols=64 Identities=31% Similarity=0.538 Sum_probs=49.2
Q ss_pred ccccccccHHHHHHHHHHH-----HhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHH
Q psy13010 493 TLVYDAGKLSVLDDLLKRL-----KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRD 556 (573)
Q Consensus 493 ~~~~~s~Kl~~l~~li~~~-----~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~ 556 (573)
+.++.|+|...|.++|..+ ...+.++||.++...++|+||..|--.++.|-|++|..-..+...
T Consensus 90 ~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~ 158 (297)
T PF11496_consen 90 WLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHK 158 (297)
T ss_dssp HHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---
T ss_pred HHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCcccc
Confidence 3456799999999999998 445789999999999999999999999999999999866555443
No 108
>KOG0952|consensus
Probab=98.47 E-value=8.7e-07 Score=96.39 Aligned_cols=164 Identities=16% Similarity=0.154 Sum_probs=104.4
Q ss_pred HHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcC-------CCCCEEEEcC-cccHHHHHHHHHHHCC--CceEEeecCC
Q psy13010 55 LYDQGINGILADEMGLGKTVQSIAFLCHIAETYD-------VWGPFLIISP-ASTLHNWQQEMERFVP--DFKVVPYWGS 124 (573)
Q Consensus 55 ~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~-------~~~~~LIV~P-~~l~~qW~~el~~~~~--~~~v~~~~g~ 124 (573)
.++.+.++||+.++|+|||..|...|..+...+. ..-+++.|+| +.|...-.+.+.+-+. +..|.-+.|.
T Consensus 122 aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD 201 (1230)
T KOG0952|consen 122 AYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGD 201 (1230)
T ss_pred hhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCc
Confidence 3467889999999999999999655544444211 1237899999 7776655555544333 6888888886
Q ss_pred hhHHHHHHHHhhhcccccCCCCceEEEeehHhHHh-------hHhhhhccCccEEEEcccccccCcch-----HHHHHHH
Q psy13010 125 PQERKILRQFWDMKNLHTKDASFHVVITSYQLVVS-------DFKYFNRIKWQYLILDEAQAIKSSSS-----MRWKLLL 192 (573)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~-------~~~~l~~~~~~~vIiDE~h~~kn~~s-----~~~~~~~ 192 (573)
-.-.+. .....+|++||.+.+.- +...+ ....+||+||+|.+..... -..+.++
T Consensus 202 ~ql~~t------------ei~~tqiiVTTPEKwDvvTRk~~~d~~l~--~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr 267 (1230)
T KOG0952|consen 202 TQLTKT------------EIADTQIIVTTPEKWDVVTRKSVGDSALF--SLVRLVIIDEVHLLHDDRGPVLETIVARTLR 267 (1230)
T ss_pred chhhHH------------HHHhcCEEEecccceeeeeeeeccchhhh--hheeeEEeeeehhhcCcccchHHHHHHHHHH
Confidence 443221 12556899999987631 11112 2467999999999976542 2222222
Q ss_pred hc----ccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHh
Q psy13010 193 GF----SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFS 237 (573)
Q Consensus 193 ~l----~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~ 237 (573)
.. +.-+.++||||--+ +-....||..++......|...|.
T Consensus 268 ~vessqs~IRivgLSATlPN-----~eDvA~fL~vn~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 268 LVESSQSMIRIVGLSATLPN-----YEDVARFLRVNPYAGLFSFDQRYR 311 (1230)
T ss_pred HHHhhhhheEEEEeeccCCC-----HHHHHHHhcCCCccceeeeccccc
Confidence 22 24477999999543 445567887766666555655553
No 109
>KOG0334|consensus
Probab=98.47 E-value=5e-06 Score=91.14 Aligned_cols=67 Identities=15% Similarity=0.102 Sum_probs=62.2
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCC
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILT 565 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~ 565 (573)
+.|+..|.++|.+... +-|+|||++-..-+|.|-+-|...|+.+..++|+.+...|...++.|+++.
T Consensus 597 ~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~ 663 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGV 663 (997)
T ss_pred hHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccC
Confidence 5699999999998754 679999999999999999999999999999999999999999999999886
No 110
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.45 E-value=3.5e-05 Score=84.43 Aligned_cols=72 Identities=19% Similarity=0.172 Sum_probs=64.5
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEE
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVG 570 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~ 570 (573)
.+++..+.+.|..+.+.|.++|||+........|.+.|...|+++..++|.++..+|.+++..|..+. +.|+
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~-i~VL 496 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGE-FDVL 496 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCC-ceEE
Confidence 45778888888888888999999999999999999999999999999999999999999999998754 4444
No 111
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.44 E-value=2.2e-06 Score=73.29 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=70.0
Q ss_pred CCCCeEEeCCCCCCHHHHHHH-HHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhh
Q psy13010 58 QGINGILADEMGLGKTVQSIA-FLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWD 136 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia-~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~ 136 (573)
++..-+|-.-+|.|||-.++- ++...... .+++||+.|..++-. |..+...+..+..-......
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~---~~rvLvL~PTRvva~---em~~aL~~~~~~~~t~~~~~--------- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR---RLRVLVLAPTRVVAE---EMYEALKGLPVRFHTNARMR--------- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT---T--EEEEESSHHHHH---HHHHHTTTSSEEEESTTSS----------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc---cCeEEEecccHHHHH---HHHHHHhcCCcccCceeeec---------
Confidence 344558888999999997764 33333333 258999999766643 33333333333222211100
Q ss_pred hcccccCCCCceEEEeehHhHHhh-HhhhhccCccEEEEcccccccCcchHHHHHH-Hhc--c-cCcEEEEeccCCC
Q psy13010 137 MKNLHTKDASFHVVITSYQLVVSD-FKYFNRIKWQYLILDEAQAIKSSSSMRWKLL-LGF--S-CRNRLLLSGTPIQ 208 (573)
Q Consensus 137 ~~~~~~~~~~~~i~i~sy~~~~~~-~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~-~~l--~-~~~~~lLTgTP~~ 208 (573)
...+.--|-+++|.++... .......+|++||+||+|-. ++.|-..+.. ..+ . ....+++||||-.
T Consensus 68 -----~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 68 -----THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp --------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred -----cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 1114556788999988654 23444468999999999974 4444333221 112 1 2368999999965
No 112
>KOG0348|consensus
Probab=98.43 E-value=7.7e-05 Score=76.01 Aligned_cols=112 Identities=21% Similarity=0.349 Sum_probs=69.2
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHH-HHhhhcC----CCCC-EEEEcC-cccHHHHHHHHHHHCCCce----EEeecCChh-
Q psy13010 59 GINGILADEMGLGKTVQSIAFLC-HIAETYD----VWGP-FLIISP-ASTLHNWQQEMERFVPDFK----VVPYWGSPQ- 126 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~-~~~~~~~----~~~~-~LIV~P-~~l~~qW~~el~~~~~~~~----v~~~~g~~~- 126 (573)
++..++-.++|+|||+.-+.=+. .+..-.+ ..|+ .||++| ..|..|-.+-+.+...... -++..|-++
T Consensus 174 grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkK 253 (708)
T KOG0348|consen 174 GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKK 253 (708)
T ss_pred CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccc
Confidence 77789999999999986543333 3322111 1233 599999 6666676666666543322 233444433
Q ss_pred -HHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh---hhccCccEEEEcccccccC
Q psy13010 127 -ERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY---FNRIKWQYLILDEAQAIKS 182 (573)
Q Consensus 127 -~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~---l~~~~~~~vIiDE~h~~kn 182 (573)
++..++ ....|+|.|...+...... +.-.+-.+||+||+.++-.
T Consensus 254 SEKARLR------------KGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlle 301 (708)
T KOG0348|consen 254 SEKARLR------------KGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLE 301 (708)
T ss_pred cHHHHHh------------cCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHh
Confidence 333333 5668999999988765533 2233457899999988743
No 113
>KOG0353|consensus
Probab=98.39 E-value=4.9e-06 Score=80.69 Aligned_cols=165 Identities=17% Similarity=0.181 Sum_probs=116.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKV 118 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v 118 (573)
.++|-|+++++..+. +...++...+|-||++.- -+ -.+.. .|..||||| .++++.-.-.++....+...
T Consensus 94 kfrplq~~ain~~ma----~ed~~lil~tgggkslcy-ql-pal~a----dg~alvi~plislmedqil~lkqlgi~as~ 163 (695)
T KOG0353|consen 94 KFRPLQLAAINATMA----GEDAFLILPTGGGKSLCY-QL-PALCA----DGFALVICPLISLMEDQILQLKQLGIDASM 163 (695)
T ss_pred hcChhHHHHhhhhhc----cCceEEEEeCCCccchhh-hh-hHHhc----CCceEeechhHHHHHHHHHHHHHhCcchhh
Confidence 689999999975544 777788889999998632 11 11222 268899999 77887777777776666666
Q ss_pred EeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH-------hhhhccCccEEEEccccccc-------Ccc
Q psy13010 119 VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF-------KYFNRIKWQYLILDEAQAIK-------SSS 184 (573)
Q Consensus 119 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~-------~~l~~~~~~~vIiDE~h~~k-------n~~ 184 (573)
+....++...+.+..... +..+.+.++.++.+.+.... ..+....|.++-+||+|-+. ...
T Consensus 164 lnansske~~k~v~~~i~-----nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy 238 (695)
T KOG0353|consen 164 LNANSSKEEAKRVEAAIT-----NKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDY 238 (695)
T ss_pred ccCcccHHHHHHHHHHHc-----CCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcch
Confidence 777777777766665443 34488899999999886532 33444678899999999863 222
Q ss_pred hHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHH
Q psy13010 185 SMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLH 219 (573)
Q Consensus 185 s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~ 219 (573)
+...-.-+.++....++||||...+-+.|...++-
T Consensus 239 ~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ 273 (695)
T KOG0353|consen 239 KALGILKRQFKGAPIIGLTATATNHVLDDAKDILC 273 (695)
T ss_pred HHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHh
Confidence 33333334456778899999999988887777654
No 114
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.37 E-value=3.6e-06 Score=95.96 Aligned_cols=162 Identities=18% Similarity=0.173 Sum_probs=103.1
Q ss_pred hhccHHHHHHHHH-HHHHHHh-----CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHH
Q psy13010 38 RGNLKHYQLKGMN-WLANLYD-----QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEME 110 (573)
Q Consensus 38 ~~~L~~~Q~~~v~-~l~~~~~-----~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~ 110 (573)
+..-+-||..+++ .+.+... .+.+|+|=|-.|+|||++++-+...+... .....+++|+- .-|-.|-.++|.
T Consensus 246 k~~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~ 324 (962)
T COG0610 246 KKYQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDEFQ 324 (962)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHHHH
Confidence 3456667777776 3322222 33579999999999999998777777776 44456777777 666678999998
Q ss_pred HHCCCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh----hhccCccEEEEcccccccCcchH
Q psy13010 111 RFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY----FNRIKWQYLILDEAQAIKSSSSM 186 (573)
Q Consensus 111 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~----l~~~~~~~vIiDE~h~~kn~~s~ 186 (573)
.+........ ...+...+++... ...-.|++||-..|...... ....+.-+||+||||+--...
T Consensus 325 ~~~~~~~~~~---~~~s~~~Lk~~l~-------~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~-- 392 (962)
T COG0610 325 SFGKVAFNDP---KAESTSELKELLE-------DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGE-- 392 (962)
T ss_pred HHHHhhhhcc---cccCHHHHHHHHh-------cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccH--
Confidence 8764333222 2222222332211 12457999999999776533 245567799999999854322
Q ss_pred HHHHHHh-cccCcEEEEeccCCCCCHH
Q psy13010 187 RWKLLLG-FSCRNRLLLSGTPIQNSMA 212 (573)
Q Consensus 187 ~~~~~~~-l~~~~~~lLTgTP~~n~~~ 212 (573)
..+.++. +....-+++||||+...-.
T Consensus 393 ~~~~~~~~~~~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 393 LAKLLKKALKKAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHHHHHHHhccceEEEeeCCccccccc
Confidence 2222222 3446679999999885533
No 115
>KOG0341|consensus
Probab=98.35 E-value=2.7e-06 Score=82.81 Aligned_cols=65 Identities=14% Similarity=0.269 Sum_probs=58.6
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCC
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILT 565 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~ 565 (573)
.+|+.+|+++++. ..-+||||++-..-.|-|.++|-.+|+..+.|+|+-.+++|..+|+.|+.+.
T Consensus 407 EaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gk 471 (610)
T KOG0341|consen 407 EAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGK 471 (610)
T ss_pred hhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCC
Confidence 5688888888864 4568999999999999999999999999999999999999999999999653
No 116
>KOG1513|consensus
Probab=98.34 E-value=7.1e-06 Score=86.67 Aligned_cols=253 Identities=12% Similarity=0.187 Sum_probs=141.8
Q ss_pred CccCCCCchhhhccHHHHHHHHHHHHHHHhC-----CC-CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCccc
Q psy13010 28 EVERPQPGLFRGNLKHYQLKGMNWLANLYDQ-----GI-NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAST 101 (573)
Q Consensus 28 ~~~~~~p~~l~~~L~~~Q~~~v~~l~~~~~~-----~~-~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l 101 (573)
-..+.+|..-...|..-|+++|-|....... .. |-||+|.-|.||--++..+|-..+-++. ++...+-+...|
T Consensus 252 ~YqlalP~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGR-KrAlW~SVSsDL 330 (1300)
T KOG1513|consen 252 TYQLALPSIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGR-KRALWFSVSSDL 330 (1300)
T ss_pred eEEEecccCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhccc-ceeEEEEecccc
Confidence 3456677755668999999999998766532 11 3399999999997766666666655533 244444455555
Q ss_pred HHHHHHHHHHHC-CCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhh-----------Hhhhhcc--
Q psy13010 102 LHNWQQEMERFV-PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD-----------FKYFNRI-- 167 (573)
Q Consensus 102 ~~qW~~el~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~-----------~~~l~~~-- 167 (573)
-..=.++|+... ++..|..+..-+ -. ......+....-.|+.+||..+--+ .+.|.++
T Consensus 331 KfDAERDL~DigA~~I~V~alnK~K--Ya------kIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~G 402 (1300)
T KOG1513|consen 331 KFDAERDLRDIGATGIAVHALNKFK--YA------KISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCG 402 (1300)
T ss_pred ccchhhchhhcCCCCccceehhhcc--cc------cccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhh
Confidence 556677776653 233333222110 00 0011113335567999999987432 2222221
Q ss_pred -Cc-cEEEEcccccccC-------cchHHHHHHHhcc----cCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCC---hHH
Q psy13010 168 -KW-QYLILDEAQAIKS-------SSSMRWKLLLGFS----CRNRLLLSGTPIQNSMAELWALLHFIMPSMFDS---HDE 231 (573)
Q Consensus 168 -~~-~~vIiDE~h~~kn-------~~s~~~~~~~~l~----~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~---~~~ 231 (573)
.| ++||+||+|..|| ..+++.+.+..|+ ..+.+..|||-...- ..+. -+..-++|+. +.+
T Consensus 403 e~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsEP-rNMa---YM~RLGlWGegtaf~e 478 (1300)
T KOG1513|consen 403 EDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASEP-RNMA---YMVRLGLWGEGTAFPE 478 (1300)
T ss_pred hccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCCc-chhh---hhhhhccccCCCcCcc
Confidence 22 5899999999998 4466667666663 446778888865432 2222 2333344433 344
Q ss_pred HHHHHhhhhhhhhcccccccHHHHHHHHHhhccceeeccccchhccCCCceEEEEEcCCCHHHHHHHHHHHHH
Q psy13010 232 FNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK 304 (573)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~ 304 (573)
|..++.. +...+... -.+..+...++.+.+.|- ..+......+-.|+||++=+..|+...+-
T Consensus 479 F~eFi~A-vEkRGvGA-----MEIVAMDMK~rGmYiARQ-----LSFkgVsFrieEv~ls~eF~k~Yn~a~~L 540 (1300)
T KOG1513|consen 479 FEEFIHA-VEKRGVGA-----MEIVAMDMKLRGMYIARQ-----LSFKGVSFRIEEVPLSKEFRKVYNRAAEL 540 (1300)
T ss_pred HHHHHHH-HHhcCCce-----eeeeehhhhhhhhhhhhh-----ccccCceEEEEecccCHHHHHHHHHHHHH
Confidence 4443332 22221111 111122223333333221 12445567888999999999999977543
No 117
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.32 E-value=0.00036 Score=77.02 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=64.3
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEE
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVG 570 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~ 570 (573)
.+++..+.+.|..+.++|.++|||+......+.|.+.|...|+++..++|+++..+|..++..|..+. +.|+
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~-i~vl 500 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE-FDVL 500 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCC-ceEE
Confidence 45678888888888888999999999999999999999999999999999999999999999998654 4443
No 118
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.29 E-value=4.1e-05 Score=84.77 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=60.3
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCC
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILT 565 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~ 565 (573)
..|..++.+.|.+....|..|||||.+......|.+.|...||++..+++ +..+|++.|..|...+
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~ 646 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQK 646 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCC
Confidence 45899999999988888999999999999999999999999999999997 5679999999998765
No 119
>KOG0346|consensus
Probab=98.28 E-value=4.4e-05 Score=75.96 Aligned_cols=65 Identities=15% Similarity=0.057 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCC
Q psy13010 500 KLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILT 565 (573)
Q Consensus 500 Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~ 565 (573)
|.-.+..+++=-+- ..|+|||.+-.+.---|.-.|++-||..+.++|++|...|.-+|++||.+-
T Consensus 254 KflllyallKL~LI-~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~ 318 (569)
T KOG0346|consen 254 KFLLLYALLKLRLI-RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGL 318 (569)
T ss_pred hHHHHHHHHHHHHh-cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcc
Confidence 44444444442122 238999999988888889999999999999999999999999999999764
No 120
>KOG0332|consensus
Probab=98.27 E-value=3.6e-05 Score=75.03 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=58.9
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 499 GKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 499 ~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
.|.++|.++..- ..-| ..||||+-..++.+|...|.+.|-.+..++|.+..++|.+++++|+.+.. +|++
T Consensus 316 ~K~~~l~~lyg~-~tig-qsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~-kVLi 385 (477)
T KOG0332|consen 316 DKYQALVNLYGL-LTIG-QSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKE-KVLI 385 (477)
T ss_pred hHHHHHHHHHhh-hhhh-heEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcc-eEEE
Confidence 377888775543 2223 67899999999999999999999999999999999999999999998875 5543
No 121
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.21 E-value=1.1e-05 Score=88.23 Aligned_cols=125 Identities=23% Similarity=0.424 Sum_probs=91.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC----
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP---- 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~---- 114 (573)
.|+..|+. |..+........|+| ++|+|||.-.+.....+..++ ++++||+| ..|+.|=.+.|.++..
T Consensus 82 ~~ws~QR~---WakR~~rg~SFaiiA-PTGvGKTTfg~~~sl~~a~kg---kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~ 154 (1187)
T COG1110 82 RPWSAQRV---WAKRLVRGKSFAIIA-PTGVGKTTFGLLMSLYLAKKG---KRVYIIVPTTTLVRQVYERLKKFAEDAGS 154 (1187)
T ss_pred CchHHHHH---HHHHHHcCCceEEEc-CCCCchhHHHHHHHHHHHhcC---CeEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 45666654 455556666677777 999999987665555555543 58899999 7777888888877762
Q ss_pred -CceEEeecCC--hhH-HHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccc
Q psy13010 115 -DFKVVPYWGS--PQE-RKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 180 (573)
Q Consensus 115 -~~~v~~~~g~--~~~-~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~ 180 (573)
...++ |++. .+. ...+.++ ..++|||+|||-..+..+.+.+.+.+|++|++|.+..+
T Consensus 155 ~~~~~~-yh~~l~~~ekee~le~i--------~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 155 LDVLVV-YHSALPTKEKEEALERI--------ESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred cceeee-eccccchHHHHHHHHHH--------hcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHH
Confidence 23334 8886 333 2233322 23899999999999999999999999999999999876
No 122
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.13 E-value=0.0012 Score=67.79 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCC
Q psy13010 500 KLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILT 565 (573)
Q Consensus 500 Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~ 565 (573)
-+.-|+..|+...+.|+++||-+--..|..-|.++|...||.+..++.+...-+|.++|...+.+.
T Consensus 431 QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~ 496 (663)
T COG0556 431 QVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE 496 (663)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCC
Confidence 345566666665667999999999999999999999999999999999999999999999887653
No 123
>KOG0351|consensus
Probab=98.13 E-value=4.8e-05 Score=85.29 Aligned_cols=167 Identities=15% Similarity=0.155 Sum_probs=100.3
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKV 118 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v 118 (573)
.++|.|.++|+.. ..|.-+++-..+|.||++.= -+... -..+-+|||.| .+|+..=...+... +..-
T Consensus 264 ~FR~~Q~eaI~~~----l~Gkd~fvlmpTG~GKSLCY-----QlPA~-l~~gitvVISPL~SLm~DQv~~L~~~--~I~a 331 (941)
T KOG0351|consen 264 GFRPNQLEAINAT----LSGKDCFVLMPTGGGKSLCY-----QLPAL-LLGGVTVVISPLISLMQDQVTHLSKK--GIPA 331 (941)
T ss_pred cCChhHHHHHHHH----HcCCceEEEeecCCceeeEe-----ecccc-ccCCceEEeccHHHHHHHHHHhhhhc--Ccce
Confidence 6999999999733 34778888889999998632 11110 11246899999 77777655555333 3444
Q ss_pred EeecCChhH--HHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh---hhcc-C---ccEEEEcccccccCcc---hH
Q psy13010 119 VPYWGSPQE--RKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY---FNRI-K---WQYLILDEAQAIKSSS---SM 186 (573)
Q Consensus 119 ~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~---l~~~-~---~~~vIiDE~h~~kn~~---s~ 186 (573)
..+.+.... +..+.+.. ..+...+.|+.+|.+.+...... +... . --++|+||||-...-. ..
T Consensus 332 ~~L~s~q~~~~~~~i~q~l-----~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp 406 (941)
T KOG0351|consen 332 CFLSSIQTAAERLAILQKL-----ANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRP 406 (941)
T ss_pred eeccccccHHHHHHHHHHH-----hCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccH
Confidence 444444333 33333321 12235889999999998764322 2222 2 4689999999864210 12
Q ss_pred HHHHHHhc----ccCcEEEEeccCCCCCHHHHHHHHHhhCC
Q psy13010 187 RWKLLLGF----SCRNRLLLSGTPIQNSMAELWALLHFIMP 223 (573)
Q Consensus 187 ~~~~~~~l----~~~~~~lLTgTP~~n~~~el~~ll~~L~~ 223 (573)
-|+.+..+ .....+.||||-...--.|+...|++-.+
T Consensus 407 ~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~ 447 (941)
T KOG0351|consen 407 SYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNP 447 (941)
T ss_pred HHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCc
Confidence 23434433 34467899999766666666655554444
No 124
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.13 E-value=0.00024 Score=76.62 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=58.1
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCce
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQS 568 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 568 (573)
..|..++.+.+.++.+.|.-|||.|.+...-..|...|.+.||++..++.+-. ++-+++|.+=-....+.
T Consensus 410 ~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~AG~~gaVT 479 (764)
T PRK12326 410 AEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEAGKYGAVT 479 (764)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhcCCCCcEE
Confidence 45899999999999889999999999999999999999999999999998855 44566776654444433
No 125
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.11 E-value=1.6e-05 Score=88.66 Aligned_cols=144 Identities=13% Similarity=0.099 Sum_probs=98.7
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCc--
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDF-- 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~-- 116 (573)
.|-++|.+++. .+..+.+.+++..+|.|||+++-.++......+ .++....| +.+..|=.++|..-+.+.
T Consensus 119 ~LD~fQ~~a~~----~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~---qrviYTsPIKALsNQKyrdl~~~fgdv~~ 191 (1041)
T COG4581 119 ELDPFQQEAIA----ILERGESVLVCAPTSSGKTVVAEYAIALALRDG---QRVIYTSPIKALSNQKYRDLLAKFGDVAD 191 (1041)
T ss_pred CcCHHHHHHHH----HHhCCCcEEEEccCCCCcchHHHHHHHHHHHcC---CceEeccchhhhhhhHHHHHHHHhhhhhh
Confidence 79999999985 456688999999999999999977777666553 25899999 888888778886655432
Q ss_pred eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH--hhhhccCccEEEEcccccccCcchHHHHH-HHh
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF--KYFNRIKWQYLILDEAQAIKSSSSMRWKL-LLG 193 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~--~~l~~~~~~~vIiDE~h~~kn~~s~~~~~-~~~ 193 (573)
.+-++.|.-.. + +++.+++.|-+.+++-. ..........||+||+|.+....-..-.. +.-
T Consensus 192 ~vGL~TGDv~I--------------N--~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii 255 (1041)
T COG4581 192 MVGLMTGDVSI--------------N--PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVII 255 (1041)
T ss_pred hccceecceee--------------C--CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHH
Confidence 23444443211 1 44556666668887642 11222356789999999998766444333 222
Q ss_pred c--ccCcEEEEeccC
Q psy13010 194 F--SCRNRLLLSGTP 206 (573)
Q Consensus 194 l--~~~~~~lLTgTP 206 (573)
+ +.-..++||||-
T Consensus 256 ~lP~~v~~v~LSATv 270 (1041)
T COG4581 256 LLPDHVRFVFLSATV 270 (1041)
T ss_pred hcCCCCcEEEEeCCC
Confidence 2 344789999994
No 126
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.08 E-value=0.00022 Score=78.72 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=57.9
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCc
Q psy13010 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQ 567 (573)
Q Consensus 496 ~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~ 567 (573)
....|..++.+.|.++.+.|.-|||-|.+...-..|...|...||++-.++.+.. ++-+++|.+=-....+
T Consensus 430 t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa~AG~~GaV 500 (913)
T PRK13103 430 TAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIAQAGRPGAL 500 (913)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHHcCCCCCcE
Confidence 3456999999999999999999999999999999999999999999988888754 4555666654444433
No 127
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.07 E-value=0.00017 Score=80.69 Aligned_cols=169 Identities=17% Similarity=0.185 Sum_probs=97.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhc-CCCCCEEEEcC-cccHHHHHHHHHHHCCCce
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY-DVWGPFLIISP-ASTLHNWQQEMERFVPDFK 117 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~-~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~ 117 (573)
..+++|..+++........+...+|..++|.|||..+++........+ .....++.|.| .+++++-.+.+..++....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 469999999987766555443778999999999999988888777762 33457888888 7777888888888775544
Q ss_pred EEee--cCChhHHHHHHHHh------hhcccccCCCCceEEEeehHhHHhh-----HhhhhccCccEEEEcccccccCc-
Q psy13010 118 VVPY--WGSPQERKILRQFW------DMKNLHTKDASFHVVITSYQLVVSD-----FKYFNRIKWQYLILDEAQAIKSS- 183 (573)
Q Consensus 118 v~~~--~g~~~~~~~~~~~~------~~~~~~~~~~~~~i~i~sy~~~~~~-----~~~l~~~~~~~vIiDE~h~~kn~- 183 (573)
+... ++...........+ ...+......-.-+++++...+... ...+..+....+|+||+|.+...
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 4433 44433322111100 0000000001111111222211100 01123344568999999999765
Q ss_pred chHHHHHH-Hhc--ccCcEEEEeccCCC
Q psy13010 184 SSMRWKLL-LGF--SCRNRLLLSGTPIQ 208 (573)
Q Consensus 184 ~s~~~~~~-~~l--~~~~~~lLTgTP~~ 208 (573)
.+...-++ ..+ .....+++|||+-.
T Consensus 355 ~~~~l~~~i~~l~~~g~~ill~SATlP~ 382 (733)
T COG1203 355 MLAALLALLEALAEAGVPVLLMSATLPP 382 (733)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEecCCCH
Confidence 33222222 222 26688999999655
No 128
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.03 E-value=0.00079 Score=77.88 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=44.6
Q ss_pred CCCeEEEEecchhHHHHHHHHHHhCCCe---EEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 514 SGHRVLVYSQMTKMIDLLEEFMVYRKYR---FMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 514 ~~~KvlIFsq~~~~l~~l~~~L~~~gi~---~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
...++|||..-...++.+.+.|...+++ +.-++|.++.++|..+.+.+ +..+|++
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~---g~rkIIV 342 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH---SGRRIVL 342 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc---CCeeEEE
Confidence 3468999999999999999999988765 56789999999999987753 3345543
No 129
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.00 E-value=0.0001 Score=72.99 Aligned_cols=73 Identities=21% Similarity=0.270 Sum_probs=52.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCC---CCCEEEEcC-cccHHHHHHHHHHH
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDV---WGPFLIISP-ASTLHNWQQEMERF 112 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~---~~~~LIV~P-~~l~~qW~~el~~~ 112 (573)
..+|.|++-+..+...+..+..+++-.++|+|||+..+..+.......+. ..+++++++ .++.++=..++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 45999999999999999989899999999999999887555433332222 126777777 44445555666554
No 130
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.00 E-value=0.0001 Score=72.99 Aligned_cols=73 Identities=21% Similarity=0.270 Sum_probs=52.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCC---CCCEEEEcC-cccHHHHHHHHHHH
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDV---WGPFLIISP-ASTLHNWQQEMERF 112 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~---~~~~LIV~P-~~l~~qW~~el~~~ 112 (573)
..+|.|++-+..+...+..+..+++-.++|+|||+..+..+.......+. ..+++++++ .++.++=..++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 45999999999999999989899999999999999887555433332222 126777777 44445555666554
No 131
>KOG0347|consensus
Probab=97.99 E-value=3.8e-05 Score=78.42 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=48.5
Q ss_pred CeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCC
Q psy13010 516 HRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTH 566 (573)
Q Consensus 516 ~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~ 566 (573)
-+.|||++..+-+.-|.-.|...+|+...++..|.+++|.+.+++|.+.++
T Consensus 464 GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~ 514 (731)
T KOG0347|consen 464 GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPS 514 (731)
T ss_pred CceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCC
Confidence 378999999999999999999999999999999999999999999998775
No 132
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.97 E-value=5.1e-05 Score=72.73 Aligned_cols=68 Identities=16% Similarity=0.287 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHHHHHHHhCCCC-eEEeCCCCCCHHHHHHHHHHHHhh-----hcCCCCCEEEEcC-cccHHHHHHHHHH
Q psy13010 40 NLKHYQLKGMNWLANLYDQGIN-GILADEMGLGKTVQSIAFLCHIAE-----TYDVWGPFLIISP-ASTLHNWQQEMER 111 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~-~ll~de~G~GKT~~~ia~~~~~~~-----~~~~~~~~LIV~P-~~l~~qW~~el~~ 111 (573)
+|-+.|..|+..+. .... .+|.-.+|+|||.++.+++..+.. .....+++||++| ...+.+=.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~----~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSAL----SSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHC----TSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH----cCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 47899999996442 2444 789999999999988888888732 2344579999999 4444555555544
No 133
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.95 E-value=0.00012 Score=80.97 Aligned_cols=147 Identities=17% Similarity=0.173 Sum_probs=92.4
Q ss_pred cHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHH---HHHHHHHHCCCc
Q psy13010 41 LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHN---WQQEMERFVPDF 116 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~q---W~~el~~~~~~~ 116 (573)
++|+|...+.-+.. +.+.+.-..+|.|||+.++.-+......+ ++++||+| .-|..| |...+.+++ ++
T Consensus 93 ~tp~qvQ~I~~i~l----~~gvIAeaqTGeGKTLAf~LP~l~~aL~g---~~v~IVTpTrELA~Qdae~m~~L~k~l-GL 164 (970)
T PRK12899 93 MVPYDVQILGAIAM----HKGFITEMQTGEGKTLTAVMPLYLNALTG---KPVHLVTVNDYLAQRDCEWVGSVLRWL-GL 164 (970)
T ss_pred CChHHHHHhhhhhc----CCCeEEEeCCCCChHHHHHHHHHHHHhhc---CCeEEEeCCHHHHHHHHHHHHHHHhhc-CC
Confidence 78999888864433 56678889999999998753333222221 35788888 444444 888888776 57
Q ss_pred eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhH-HhhHh---------hhhccCccEEEEcccccccCcchH
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLV-VSDFK---------YFNRIKWQYLILDEAQAIKSSSSM 186 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~-~~~~~---------~l~~~~~~~vIiDE~h~~kn~~s~ 186 (573)
++.++.|.......... ...+|++.|...+ ..... .....++.++|+||+..+---
T Consensus 165 sV~~i~GG~~~~eq~~~-----------y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLiD--- 230 (970)
T PRK12899 165 TTGVLVSGSPLEKRKEI-----------YQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILID--- 230 (970)
T ss_pred eEEEEeCCCCHHHHHHH-----------cCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhhh---
Confidence 77666655333332222 2368999998888 32211 112346789999999876321
Q ss_pred HHHHHHhcccCcEEEEeccCCCCCHHHHHHHHH
Q psy13010 187 RWKLLLGFSCRNRLLLSGTPIQNSMAELWALLH 219 (573)
Q Consensus 187 ~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~ 219 (573)
.++--+++||.+-.. .++|..++
T Consensus 231 --------EArTPLIISg~~~~~--~~~Y~~~~ 253 (970)
T PRK12899 231 --------EARTPLIISGPGEKH--NPVYFELK 253 (970)
T ss_pred --------ccCCceeeeCCCccc--cHHHHHHh
Confidence 355568888876443 44554443
No 134
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.94 E-value=0.00014 Score=78.59 Aligned_cols=78 Identities=19% Similarity=0.110 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHC-----CCceE
Q psy13010 45 QLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFV-----PDFKV 118 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~-----~~~~v 118 (573)
|.+-+..+.+.+..+...++-..+|+|||+..+.-+....... ..+++||++| ..+..|+.+++.... ..+++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER-PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 7788888888888888888889999999987754443332221 1268999999 777788888876554 13555
Q ss_pred EeecC
Q psy13010 119 VPYWG 123 (573)
Q Consensus 119 ~~~~g 123 (573)
.+..|
T Consensus 81 ~~lkG 85 (636)
T TIGR03117 81 GFFPG 85 (636)
T ss_pred EEEEC
Confidence 55444
No 135
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.88 E-value=0.00075 Score=78.26 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=47.6
Q ss_pred HHHHHHHHHh-CCCeEEEEecchhHHHHHHHHHHhCC---CeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 504 LDDLLKRLKA-SGHRVLVYSQMTKMIDLLEEFMVYRK---YRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 504 l~~li~~~~~-~~~KvlIFsq~~~~l~~l~~~L~~~g---i~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
+...|..+.. ...+||||..-...+..+.+.|...+ +.+.-++|.++.++|++++..+ +..+|+|
T Consensus 267 i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~rkIVL 335 (1283)
T TIGR01967 267 ILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SGRRIVL 335 (1283)
T ss_pred HHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CCceEEE
Confidence 3333444333 34589999999999999999998764 4578899999999999986554 3345543
No 136
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.87 E-value=0.00014 Score=83.06 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=57.7
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHH-HHHH---HHCC
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQ-QEME---RFVP 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~-~el~---~~~~ 114 (573)
..+|.|.+.+..+...+..+..+++-..+|+|||+..+.-+..... ..++++|.+| ..|..||. +++. +.++
T Consensus 245 ~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~ 321 (850)
T TIGR01407 245 EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQSQLLEKDIPLLNEILN 321 (850)
T ss_pred ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHHHHHHHHcC
Confidence 5899999999988888887777888889999999877554433332 1258999999 56677874 3554 3333
Q ss_pred -CceEEeecCC
Q psy13010 115 -DFKVVPYWGS 124 (573)
Q Consensus 115 -~~~v~~~~g~ 124 (573)
++++.+..|.
T Consensus 322 ~~~~~~~~kG~ 332 (850)
T TIGR01407 322 FKINAALIKGK 332 (850)
T ss_pred CCceEEEEEcc
Confidence 3555555543
No 137
>KOG0948|consensus
Probab=97.82 E-value=5.9e-05 Score=79.70 Aligned_cols=140 Identities=15% Similarity=0.148 Sum_probs=93.4
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKV 118 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v 118 (573)
+|-|||..+|. ++.++...++..-+..|||+.|=-.|+..+.. +.+++.-.| +.|..|=.+|+..-|.+ |
T Consensus 129 ~LDpFQ~~aI~----Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQRVIYTSPIKALSNQKYREl~~EF~D--V 199 (1041)
T KOG0948|consen 129 TLDPFQSTAIK----CIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQRVIYTSPIKALSNQKYRELLEEFKD--V 199 (1041)
T ss_pred ccCchHhhhhh----hhcCCceEEEEeecCCCcchHHHHHHHHHHHh---cCeEEeeChhhhhcchhHHHHHHHhcc--c
Confidence 78999999984 67778888999999999999995444444433 147888899 77777877888665533 3
Q ss_pred EeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH----hhhhccCccEEEEcccccccCcchHHHHH--HH
Q psy13010 119 VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF----KYFNRIKWQYLILDEAQAIKSSSSMRWKL--LL 192 (573)
Q Consensus 119 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~----~~l~~~~~~~vIiDE~h~~kn~~s~~~~~--~~ 192 (573)
-...|.-. -.+++..+++|-+.+++-. .-+. ....||+||.|.+++.....-.. +.
T Consensus 200 GLMTGDVT----------------InP~ASCLVMTTEILRsMLYRGSEvmr--EVaWVIFDEIHYMRDkERGVVWEETII 261 (1041)
T KOG0948|consen 200 GLMTGDVT----------------INPDASCLVMTTEILRSMLYRGSEVMR--EVAWVIFDEIHYMRDKERGVVWEETII 261 (1041)
T ss_pred ceeeccee----------------eCCCCceeeeHHHHHHHHHhccchHhh--eeeeEEeeeehhccccccceeeeeeEE
Confidence 33334211 1155667888888887642 2333 45669999999998865322111 11
Q ss_pred hc-ccCcEEEEeccC
Q psy13010 193 GF-SCRNRLLLSGTP 206 (573)
Q Consensus 193 ~l-~~~~~~lLTgTP 206 (573)
-+ ..-+-+.||||-
T Consensus 262 llP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 262 LLPDNVRFVFLSATI 276 (1041)
T ss_pred eccccceEEEEeccC
Confidence 11 345668899993
No 138
>KOG0947|consensus
Probab=97.82 E-value=6.8e-05 Score=81.27 Aligned_cols=139 Identities=18% Similarity=0.225 Sum_probs=96.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKV 118 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v 118 (573)
.|-.||++|+-. +..+...+++.-+-.|||++|=..++..... . .+++.-.| +.+..|=.++|+..|.+..
T Consensus 297 elD~FQk~Ai~~----lerg~SVFVAAHTSAGKTvVAEYAialaq~h-~--TR~iYTSPIKALSNQKfRDFk~tF~Dvg- 368 (1248)
T KOG0947|consen 297 ELDTFQKEAIYH----LERGDSVFVAAHTSAGKTVVAEYAIALAQKH-M--TRTIYTSPIKALSNQKFRDFKETFGDVG- 368 (1248)
T ss_pred CccHHHHHHHHH----HHcCCeEEEEecCCCCcchHHHHHHHHHHhh-c--cceEecchhhhhccchHHHHHHhccccc-
Confidence 688999999854 4458888999999999999985555544332 2 47788899 7777788899998886544
Q ss_pred EeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH----hhhhccCccEEEEcccccccCcchHH-HHHHHh
Q psy13010 119 VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF----KYFNRIKWQYLILDEAQAIKSSSSMR-WKLLLG 193 (573)
Q Consensus 119 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~----~~l~~~~~~~vIiDE~h~~kn~~s~~-~~~~~~ 193 (573)
.+.|.-.. ...+.++|+|-+.+++.. +.+. ....||+||+|.+.+..... +..+.-
T Consensus 369 -LlTGDvqi----------------nPeAsCLIMTTEILRsMLYrgadliR--DvE~VIFDEVHYiND~eRGvVWEEViI 429 (1248)
T KOG0947|consen 369 -LLTGDVQI----------------NPEASCLIMTTEILRSMLYRGADLIR--DVEFVIFDEVHYINDVERGVVWEEVII 429 (1248)
T ss_pred -eeecceee----------------CCCcceEeehHHHHHHHHhcccchhh--ccceEEEeeeeecccccccccceeeee
Confidence 44554221 156679999999998742 3343 35779999999998754322 222222
Q ss_pred c--ccCcEEEEecc
Q psy13010 194 F--SCRNRLLLSGT 205 (573)
Q Consensus 194 l--~~~~~~lLTgT 205 (573)
+ +.-..++||||
T Consensus 430 MlP~HV~~IlLSAT 443 (1248)
T KOG0947|consen 430 MLPRHVNFILLSAT 443 (1248)
T ss_pred eccccceEEEEecc
Confidence 2 33456888888
No 139
>KOG0326|consensus
Probab=97.77 E-value=4.5e-05 Score=72.79 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=57.8
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCC
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILT 565 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~ 565 (573)
+.|+.-|..+...+. -...||||+.+....+|.......|+++..++.+|.++.|..+.-+|+++.
T Consensus 307 ~qKvhCLntLfskLq--INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~ 372 (459)
T KOG0326|consen 307 RQKVHCLNTLFSKLQ--INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGK 372 (459)
T ss_pred hhhhhhHHHHHHHhc--ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccc
Confidence 457777777777653 447899999999999999999999999999999999999999999999875
No 140
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.76 E-value=0.00028 Score=77.12 Aligned_cols=158 Identities=17% Similarity=0.143 Sum_probs=109.6
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCce
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFK 117 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~ 117 (573)
..|-+-|..++..+..........++.--+|+|||=.=+-++......+ +.+||++| .++..|-...|+..|+ .+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg-~~ 272 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFG-AK 272 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---CEEEEEeccccchHHHHHHHHHHhC-CC
Confidence 4788999999988766542234458999999999988888888888875 47899999 8899998888877775 78
Q ss_pred EEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccc--cCcchHHHHH--HHh
Q psy13010 118 VVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI--KSSSSMRWKL--LLG 193 (573)
Q Consensus 118 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~--kn~~s~~~~~--~~~ 193 (573)
+.++++.=...+....+... ..+...|||-+-+.+..-.. +-++||+||=|.- |..++.+|.+ +..
T Consensus 273 v~vlHS~Ls~~er~~~W~~~-----~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sYKq~~~prYhARdvA~ 342 (730)
T COG1198 273 VAVLHSGLSPGERYRVWRRA-----RRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSYKQEDGPRYHARDVAV 342 (730)
T ss_pred hhhhcccCChHHHHHHHHHH-----hcCCceEEEEechhhcCchh-----hccEEEEeccccccccCCcCCCcCHHHHHH
Confidence 88887753333333222222 23788899998887754322 3479999999984 4433323322 222
Q ss_pred c----ccCcEEEEeccCCCCC
Q psy13010 194 F----SCRNRLLLSGTPIQNS 210 (573)
Q Consensus 194 l----~~~~~~lLTgTP~~n~ 210 (573)
+ .....++-||||--.+
T Consensus 343 ~Ra~~~~~pvvLgSATPSLES 363 (730)
T COG1198 343 LRAKKENAPVVLGSATPSLES 363 (730)
T ss_pred HHHHHhCCCEEEecCCCCHHH
Confidence 2 2446799999996544
No 141
>KOG0344|consensus
Probab=97.70 E-value=0.00044 Score=71.61 Aligned_cols=66 Identities=21% Similarity=0.225 Sum_probs=58.2
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHH-HhCCCeEEEecCCCCHHHHHHHHhCcCCCC
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFM-VYRKYRFMRLDGSSKISERRDMFAVPGILT 565 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L-~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~ 565 (573)
.+|+-++.++|..-.+ --+|||-|......-|-+.| ...+|.+..++|+.++.+|.+.+++|+.+.
T Consensus 372 ~~K~lA~rq~v~~g~~--PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~ 438 (593)
T KOG0344|consen 372 KGKLLALRQLVASGFK--PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGK 438 (593)
T ss_pred hhHHHHHHHHHhccCC--CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccC
Confidence 4588888888877543 36999999999999999999 778999999999999999999999999775
No 142
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.64 E-value=0.011 Score=65.46 Aligned_cols=71 Identities=13% Similarity=0.225 Sum_probs=58.7
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCC-CHHHHHHHHhCcCCCCCce
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSS-KISERRDMFAVPGILTHQS 568 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~-~~~~R~~~i~~F~~~~~~~ 568 (573)
..|..++.+-+.+..+.|.-|||-|.+...-..|...|.+.||++-.++.+. ..++-+++|.+=-....+.
T Consensus 407 ~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG~~G~VT 478 (870)
T CHL00122 407 LSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRKGSIT 478 (870)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcCCCCcEE
Confidence 4589999999988888999999999999999999999999999999999973 4466667777644444433
No 143
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.62 E-value=0.00044 Score=77.47 Aligned_cols=73 Identities=21% Similarity=0.211 Sum_probs=56.7
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHH
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERF 112 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~ 112 (573)
.++|.|++.+..++..+..+..+++-.++|+|||+.++..........+...++++.+. .+.+.|-.+|+++.
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 46999999999999999999999999999999999887555544443333345666666 56667899999883
No 144
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.61 E-value=0.0043 Score=68.51 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=60.0
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCC-CCHHHHHHHHhCcCCCCCceE
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGS-SKISERRDMFAVPGILTHQSV 569 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~-~~~~~R~~~i~~F~~~~~~~v 569 (573)
..|..++.+.|.++.+.|.-|||-|.....-..|.+.|.+.||++-.++.+ ...++-+++|.+=-....+.|
T Consensus 422 ~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~~GaVTI 494 (939)
T PRK12902 422 IAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGRKGAVTI 494 (939)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCCCCcEEE
Confidence 569999999999988899999999999999999999999999999999997 455666777776544444433
No 145
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=97.59 E-value=0.00025 Score=60.98 Aligned_cols=67 Identities=27% Similarity=0.340 Sum_probs=62.7
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCC
Q psy13010 499 GKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILT 565 (573)
Q Consensus 499 ~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~ 565 (573)
.|...+.+++.+..+++.++|||+.....+..+.+.|...++.+..++|+++..+|..+++.|+++.
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 78 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE 78 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC
Confidence 5999999999987667889999999999999999999999999999999999999999999999877
No 146
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.56 E-value=0.00042 Score=75.91 Aligned_cols=130 Identities=8% Similarity=-0.015 Sum_probs=91.9
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhhhcccccCCCC
Q psy13010 68 MGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDAS 146 (573)
Q Consensus 68 ~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 146 (573)
.|+|||-.-+.++......+ +.+||++| .++..|+...|...|++..+.++++.-...+..+.+....+ +.
T Consensus 169 ~GSGKTevyl~~i~~~l~~G---k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~-----G~ 240 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG---RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR-----GQ 240 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC---CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC-----CC
Confidence 59999999999999888864 46899999 88889999999999976789899987666655555444333 67
Q ss_pred ceEEEeehHhHHhhHhhhhccCccEEEEcccccc--cCcchHHH--HHHHhc----ccCcEEEEeccCCCCC
Q psy13010 147 FHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI--KSSSSMRW--KLLLGF----SCRNRLLLSGTPIQNS 210 (573)
Q Consensus 147 ~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~--kn~~s~~~--~~~~~l----~~~~~~lLTgTP~~n~ 210 (573)
..|+|-|.+.+..-. -+.++||+||=|.- |...+.++ +.+-.+ .....++-|+||--..
T Consensus 241 ~~IViGtRSAvFaP~-----~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles 307 (665)
T PRK14873 241 ARVVVGTRSAVFAPV-----EDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEA 307 (665)
T ss_pred CcEEEEcceeEEecc-----CCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHH
Confidence 789999888663321 25689999999874 43322221 112212 3445678899986543
No 147
>KOG0951|consensus
Probab=97.50 E-value=0.00046 Score=77.11 Aligned_cols=151 Identities=13% Similarity=0.079 Sum_probs=87.2
Q ss_pred HhCCCCeEEeCCCCCCHHHHHHHHH-HHHhhhcC-------CCCCEEEEcC-cccHHHHHHHHHHHCCCceEEeecCChh
Q psy13010 56 YDQGINGILADEMGLGKTVQSIAFL-CHIAETYD-------VWGPFLIISP-ASTLHNWQQEMERFVPDFKVVPYWGSPQ 126 (573)
Q Consensus 56 ~~~~~~~ll~de~G~GKT~~~ia~~-~~~~~~~~-------~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v~~~~g~~~ 126 (573)
+....+.++|.++|.|||..|+.-+ ..+....+ ....+..|+| +.|+..|.+.|-+++.++.|.|..-+++
T Consensus 322 l~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD 401 (1674)
T KOG0951|consen 322 LRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGD 401 (1674)
T ss_pred hcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEeccc
Confidence 3456677999999999999875433 33322211 1226788999 8888899999988886655555443332
Q ss_pred HHHHHHHHhhhcccccCCCCceEEEeehHhHH---hh-HhhhhccCccEEEEcccccccCc-c----hHHHHHHHhc---
Q psy13010 127 ERKILRQFWDMKNLHTKDASFHVVITSYQLVV---SD-FKYFNRIKWQYLILDEAQAIKSS-S----SMRWKLLLGF--- 194 (573)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~---~~-~~~l~~~~~~~vIiDE~h~~kn~-~----s~~~~~~~~l--- 194 (573)
......+. ..-.|+++|.+... ++ .+.-...-++++|+||.|..-.. + |-..+-.+..
T Consensus 402 ~~l~~~qi----------eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~ 471 (1674)
T KOG0951|consen 402 SQLGKEQI----------EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSEST 471 (1674)
T ss_pred ccchhhhh----------hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhc
Confidence 22111111 23357777777551 11 11111113678999999999321 1 1112222222
Q ss_pred -ccCcEEEEeccCCCCCHHHHHHHH
Q psy13010 195 -SCRNRLLLSGTPIQNSMAELWALL 218 (573)
Q Consensus 195 -~~~~~~lLTgTP~~n~~~el~~ll 218 (573)
...+.++||||.-+ +.|..+.+
T Consensus 472 ~e~~RlVGLSATLPN--y~DV~~Fl 494 (1674)
T KOG0951|consen 472 EEGSRLVGLSATLPN--YEDVASFL 494 (1674)
T ss_pred ccCceeeeecccCCc--hhhhHHHh
Confidence 24578999999543 44544433
No 148
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.46 E-value=0.00023 Score=65.83 Aligned_cols=153 Identities=18% Similarity=0.236 Sum_probs=66.4
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCC---c
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPD---F 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~---~ 116 (573)
.+...|..+++.|. .....++.-..|+|||+.|++....+... +...+++|+-|..-+.++. -|.|+ -
T Consensus 4 p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~l----GflpG~~~e 74 (205)
T PF02562_consen 4 PKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGEDL----GFLPGDLEE 74 (205)
T ss_dssp --SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT--------SS------
T ss_pred CCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCcccc----ccCCCCHHH
Confidence 35678999988665 35566888899999999999988877776 4456777777754332222 12222 0
Q ss_pred eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhccc
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSC 196 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~ 196 (573)
+.-.|.. .-.+.+..+..............|-+.+...++-. .+...+||+||++++... +.-..+..+..
T Consensus 75 K~~p~~~--p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGr-----t~~~~~iIvDEaQN~t~~--~~k~ilTR~g~ 145 (205)
T PF02562_consen 75 KMEPYLR--PIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGR-----TFDNAFIIVDEAQNLTPE--ELKMILTRIGE 145 (205)
T ss_dssp ---TTTH--HHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT-------B-SEEEEE-SGGG--HH--HHHHHHTTB-T
T ss_pred HHHHHHH--HHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCc-----cccceEEEEecccCCCHH--HHHHHHcccCC
Confidence 1111100 00000000000000000001112344444333221 134589999999987543 23334555566
Q ss_pred CcEEEEeccCCCCC
Q psy13010 197 RNRLLLSGTPIQNS 210 (573)
Q Consensus 197 ~~~~lLTgTP~~n~ 210 (573)
..++.++|-|.+.+
T Consensus 146 ~skii~~GD~~Q~D 159 (205)
T PF02562_consen 146 GSKIIITGDPSQID 159 (205)
T ss_dssp T-EEEEEE------
T ss_pred CcEEEEecCceeec
Confidence 68899999987755
No 149
>PRK10536 hypothetical protein; Provisional
Probab=97.44 E-value=0.00075 Score=64.30 Aligned_cols=153 Identities=18% Similarity=0.157 Sum_probs=81.1
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCc---
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDF--- 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~--- 116 (573)
.....|...+.++.+ ....++.-+.|+|||+.++++....... +....++|+-|.--. .+...|.|+-
T Consensus 59 p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~kIiI~RP~v~~----ge~LGfLPG~~~e 129 (262)
T PRK10536 59 ARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIH-KDVDRIIVTRPVLQA----DEDLGFLPGDIAE 129 (262)
T ss_pred CCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeeEEEEeCCCCCc----hhhhCcCCCCHHH
Confidence 566778887776533 5577888999999999999988865433 223455555443211 2333333320
Q ss_pred eEEeecCChhHHHHHHHHhhhcccc--cCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhc
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLH--TKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF 194 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l 194 (573)
++..|.. .--+.+.......... .......|.+.+...++-. .+.-++||+||++++.. .+....+..+
T Consensus 130 K~~p~~~--pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGr-----tl~~~~vIvDEaqn~~~--~~~k~~ltR~ 200 (262)
T PRK10536 130 KFAPYFR--PVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGR-----TFENAVVILDEAQNVTA--AQMKMFLTRL 200 (262)
T ss_pred HHHHHHH--HHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCC-----cccCCEEEEechhcCCH--HHHHHHHhhc
Confidence 0000000 0000000000000000 0001123455555444321 12347999999999855 3344556667
Q ss_pred ccCcEEEEeccCCCCC
Q psy13010 195 SCRNRLLLSGTPIQNS 210 (573)
Q Consensus 195 ~~~~~~lLTgTP~~n~ 210 (573)
....+++++|-|-+-+
T Consensus 201 g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 201 GENVTVIVNGDITQCD 216 (262)
T ss_pred CCCCEEEEeCChhhcc
Confidence 7788999999987655
No 150
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.43 E-value=0.0058 Score=67.29 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=54.0
Q ss_pred ccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhC
Q psy13010 497 DAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAV 560 (573)
Q Consensus 497 ~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~ 560 (573)
...|..++.+.|.+..+.|.-|||.|.+...-..|...|.+.||++-.++.+.. ++-+++|.+
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~-e~EA~IIa~ 470 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN-AREAEIIAK 470 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-hhHHHHHHh
Confidence 457999999999998889999999999999999999999999999999998755 344455553
No 151
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.33 E-value=0.0087 Score=67.00 Aligned_cols=122 Identities=15% Similarity=0.088 Sum_probs=75.4
Q ss_pred CceEEEeehHhHHhhH--hhhhccCccEEEEcccccccCcchHHHHHHHhc----ccCcEEEEeccCCC--CCHHHHHHH
Q psy13010 146 SFHVVITSYQLVVSDF--KYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF----SCRNRLLLSGTPIQ--NSMAELWAL 217 (573)
Q Consensus 146 ~~~i~i~sy~~~~~~~--~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l----~~~~~~lLTgTP~~--n~~~el~~l 217 (573)
...|+++|...+..|. ..+.--....+||||||++....+..+-+ +.+ +...+.++|+.|.. .....+-..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~-rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~v 85 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFIL-RLYRQKNKTGFIKAFSDNPEAFTMGFSPLETK 85 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHH-HHHHHhCCCcceEEecCCCcccccchHHHHHH
Confidence 3458888888887764 23333457889999999997654433322 222 34578999999987 345666666
Q ss_pred HHhhCCCCCCChHHHHHHHhhhhhhhhcccccccHHHHHHHHHhhccceeeccccchhccCCC--ceEEEEEcCCCHHHH
Q psy13010 218 LHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSD--KIEIMVYCPLTSRQK 295 (573)
Q Consensus 218 l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~k~~~~~~LP~--~~~~~v~v~ls~~q~ 295 (573)
+.-|.-...--|..|.. ++...|-+ ....++.|+||+.-+
T Consensus 86 mk~L~i~~v~l~prf~~--------------------------------------~V~~~l~~~~~~V~ei~V~l~~~m~ 127 (814)
T TIGR00596 86 MRNLFLRHVYLWPRFHV--------------------------------------EVASSLEKHKAEVIELHVSLTDSMS 127 (814)
T ss_pred HHHhCcCeEEEeCCCch--------------------------------------HHHHHhccCCCeEEEEEeCCCHHHH
Confidence 66554333222222222 12222222 356789999999998
Q ss_pred HHHHHHHHHHH
Q psy13010 296 LLYSALKKKIK 306 (573)
Q Consensus 296 ~~Y~~~~~~~~ 306 (573)
++...+.+-..
T Consensus 128 ~Iq~~l~~~l~ 138 (814)
T TIGR00596 128 QIQSAILECLN 138 (814)
T ss_pred HHHHHHHHHHH
Confidence 88887776654
No 152
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.30 E-value=0.0041 Score=67.89 Aligned_cols=52 Identities=17% Similarity=0.416 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHH
Q psy13010 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553 (573)
Q Consensus 501 l~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~ 553 (573)
....-++... +..|++|.|||...++.+++++.....+..+..++|+.+..+
T Consensus 269 ~tF~~~L~~~-L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d 320 (824)
T PF02399_consen 269 TTFFSELLAR-LNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED 320 (824)
T ss_pred hhHHHHHHHH-HhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc
Confidence 3444444444 578999999999999999999999999999999999888763
No 153
>KOG0327|consensus
Probab=97.30 E-value=0.0068 Score=59.90 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=56.4
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEE
Q psy13010 500 KLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVG 570 (573)
Q Consensus 500 Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~ 570 (573)
|+.-+-.+.+ +-...+||++-..-++.|...|..+|+....++|.+...+|..++..|+.+.. +|+
T Consensus 252 k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gss-rvl 317 (397)
T KOG0327|consen 252 KLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSS-RVL 317 (397)
T ss_pred cccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCc-eEE
Confidence 5555666665 34578999999999999999999999999999999999999999999998764 444
No 154
>KOG0337|consensus
Probab=97.27 E-value=0.0044 Score=61.80 Aligned_cols=68 Identities=10% Similarity=-0.059 Sum_probs=59.1
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCC
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTH 566 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~ 566 (573)
..|..+|..++.+... ++..+||..-.....++...|...|+....|.|++...-|...+.+|+....
T Consensus 245 a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~ 312 (529)
T KOG0337|consen 245 AEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKT 312 (529)
T ss_pred HHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCcc
Confidence 3477888888877543 5679999999999999999999999999999999999999999999996543
No 155
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.25 E-value=0.0011 Score=71.72 Aligned_cols=133 Identities=15% Similarity=0.158 Sum_probs=86.4
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHH----HHHHHHHHC-----C--CceEEeecCChhHHH
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHN----WQQEMERFV-----P--DFKVVPYWGSPQERK 129 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~q----W~~el~~~~-----~--~~~v~~~~g~~~~~~ 129 (573)
++=+-.|+|+|||.+=+-.|-.+....+. -+++||+|...+.. --..+.++| . ..+.++|.... .+.
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~YG~-~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~-~~~ 153 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKKYGL-FKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDI-EKF 153 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHHhCc-eeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHH-HHH
Confidence 34455699999999988888888887766 46788999655542 223334433 2 35566665211 111
Q ss_pred HHHHHhhhcccccCCCCceEEEeehHhHHhh---Hhhhh-----cc---------------CccEEEEcccccccCcchH
Q psy13010 130 ILRQFWDMKNLHTKDASFHVVITSYQLVVSD---FKYFN-----RI---------------KWQYLILDEAQAIKSSSSM 186 (573)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~---~~~l~-----~~---------------~~~~vIiDE~h~~kn~~s~ 186 (573)
.. .......+++++.+.+.++ ...+. .. .-..||+||.|++... ..
T Consensus 154 ~~----------~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~-~k 222 (985)
T COG3587 154 KF----------KSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD-DK 222 (985)
T ss_pred hh----------ccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc-hH
Confidence 11 2225556888888887665 21111 11 1247999999999775 67
Q ss_pred HHHHHHhcccCcEEEEeccC
Q psy13010 187 RWKLLLGFSCRNRLLLSGTP 206 (573)
Q Consensus 187 ~~~~~~~l~~~~~~lLTgTP 206 (573)
.+.++..+.+-..+=.+||-
T Consensus 223 ~~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 223 TYGAIKQLNPLLILRFGATF 242 (985)
T ss_pred HHHHHHhhCceEEEEecccc
Confidence 89999999988888888884
No 156
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.21 E-value=0.0006 Score=58.82 Aligned_cols=117 Identities=19% Similarity=0.157 Sum_probs=65.0
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhc---CCCCCEEEEcCccc-HHHHHHHHHHHCCCceEEeecCChhHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETY---DVWGPFLIISPAST-LHNWQQEMERFVPDFKVVPYWGSPQERKILRQF 134 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~---~~~~~~LIV~P~~l-~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~ 134 (573)
++.+++.-+.|+|||..+-.++..+.... ....-+.+-+|... ...+..++...+..... + ...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~-~~~------- 71 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK----S-RQT------- 71 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS----S-TS--------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc----c-cCC-------
Confidence 44567888999999999988888776421 01123455555444 34555566444311000 0 000
Q ss_pred hhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhc--ccCcEEEEeccCC
Q psy13010 135 WDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF--SCRNRLLLSGTPI 207 (573)
Q Consensus 135 ~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l--~~~~~~lLTgTP~ 207 (573)
..+....-...+....-.+||+||+|++. .......++.+ .....++++|||-
T Consensus 72 ------------------~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 72 ------------------SDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTPE 126 (131)
T ss_dssp ------------------HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESST
T ss_pred ------------------HHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEEChh
Confidence 11111122334444445799999999984 24556666666 5667899999993
No 157
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.14 E-value=0.0059 Score=69.21 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=48.9
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHH-HHHHHHH
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHN-WQQEMER 111 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~q-W~~el~~ 111 (573)
..|+-|.+-...+.+.+..+...++-..+|+|||+.-+.-+. ... ...+++|.|| ..|..| +.+++..
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l--~~~--~~~~vvI~t~T~~Lq~Ql~~~~i~~ 314 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLL--AQS--DQRQIIVSVPTKILQDQIMAEEVKA 314 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHH--Hhc--CCCcEEEEeCcHHHHHHHHHHHHHH
Confidence 689999999888888888887778888999999986543322 211 1258999999 555556 4555543
No 158
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.13 E-value=0.0049 Score=67.81 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=54.9
Q ss_pred hhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccH-HHHHHHHHHHCCCc
Q psy13010 38 RGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTL-HNWQQEMERFVPDF 116 (573)
Q Consensus 38 ~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~-~qW~~el~~~~~~~ 116 (573)
...|-+.|..++.+... .....+|--.+|+|||.++.+++..+...+ .++|+++|.+.. .+..+.+... +.
T Consensus 155 ~~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g---~~VLv~a~sn~Avd~l~e~l~~~--~~ 226 (637)
T TIGR00376 155 DPNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKRG---LRVLVTAPSNIAVDNLLERLALC--DQ 226 (637)
T ss_pred CCCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEEcCcHHHHHHHHHHHHhC--CC
Confidence 35799999999976532 335568888999999999999988877653 389999996554 4566666553 34
Q ss_pred eEEee
Q psy13010 117 KVVPY 121 (573)
Q Consensus 117 ~v~~~ 121 (573)
+++.+
T Consensus 227 ~vvRl 231 (637)
T TIGR00376 227 KIVRL 231 (637)
T ss_pred cEEEe
Confidence 44443
No 159
>KOG0352|consensus
Probab=97.07 E-value=0.01 Score=59.30 Aligned_cols=168 Identities=15% Similarity=0.191 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceEEee
Q psy13010 43 HYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKVVPY 121 (573)
Q Consensus 43 ~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v~~~ 121 (573)
+-|..++.-+. +......++.++|.||++.- -+-.++.. +-++||.| ..|+..-.+.|.+..-....+.-
T Consensus 23 ~LQE~A~~c~V---K~k~DVyVsMPTGaGKSLCy--QLPaL~~~----gITIV~SPLiALIkDQiDHL~~LKVp~~SLNS 93 (641)
T KOG0352|consen 23 RLQEQAINCIV---KRKCDVYVSMPTGAGKSLCY--QLPALVHG----GITIVISPLIALIKDQIDHLKRLKVPCESLNS 93 (641)
T ss_pred hHHHHHHHHHH---hccCcEEEeccCCCchhhhh--hchHHHhC----CeEEEehHHHHHHHHHHHHHHhcCCchhHhcc
Confidence 55888886443 45666799999999999742 11122222 46788888 66666677777665422222222
Q ss_pred cCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhh-----Hhhhhc-cCccEEEEccccccc------CcchHHHH
Q psy13010 122 WGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD-----FKYFNR-IKWQYLILDEAQAIK------SSSSMRWK 189 (573)
Q Consensus 122 ~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~-----~~~l~~-~~~~~vIiDE~h~~k------n~~s~~~~ 189 (573)
.-+..+++.+. .+.......-.++.+|.+....+ ...|.+ ..-.++++||+|-.. .+.-.+.-
T Consensus 94 KlSt~ER~ri~-----~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG 168 (641)
T KOG0352|consen 94 KLSTVERSRIM-----GDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLG 168 (641)
T ss_pred hhhHHHHHHHH-----HHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhh
Confidence 22233333222 23334445667788888766543 222322 346789999999873 24444444
Q ss_pred HHHhcc-cCcEEEEeccCCCCCHHHHHHHHHhhCCC
Q psy13010 190 LLLGFS-CRNRLLLSGTPIQNSMAELWALLHFIMPS 224 (573)
Q Consensus 190 ~~~~l~-~~~~~lLTgTP~~n~~~el~~ll~~L~~~ 224 (573)
++++.- ...-+.||||-.+.--+|+|.+|.+-.|-
T Consensus 169 ~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PV 204 (641)
T KOG0352|consen 169 SLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPV 204 (641)
T ss_pred hHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcH
Confidence 444432 23457899999999999999999976554
No 160
>KOG1802|consensus
Probab=97.06 E-value=0.0029 Score=66.55 Aligned_cols=75 Identities=23% Similarity=0.390 Sum_probs=58.6
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCccc-HHHHHHHHHHHCCCceE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAST-LHNWQQEMERFVPDFKV 118 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l-~~qW~~el~~~~~~~~v 118 (573)
.|-.-|..||...+. ..-.||--++|+|||+++.+++..+...+. +|+||++|+.+ +.|-.+.|.+. +++|
T Consensus 410 kLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~~~--~~VLvcApSNiAVDqLaeKIh~t--gLKV 481 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQHA--GPVLVCAPSNIAVDQLAEKIHKT--GLKV 481 (935)
T ss_pred hhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHhcC--CceEEEcccchhHHHHHHHHHhc--CceE
Confidence 688999999976654 455688999999999999999888888744 79999999655 55677777664 4777
Q ss_pred Eeec
Q psy13010 119 VPYW 122 (573)
Q Consensus 119 ~~~~ 122 (573)
+-+.
T Consensus 482 vRl~ 485 (935)
T KOG1802|consen 482 VRLC 485 (935)
T ss_pred eeee
Confidence 6553
No 161
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.03 E-value=0.0076 Score=69.53 Aligned_cols=83 Identities=12% Similarity=0.165 Sum_probs=56.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHH-HHHHH---HHHCC
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHN-WQQEM---ERFVP 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~q-W~~el---~~~~~ 114 (573)
..||-|.+-++.+.+.+..+...++=..+|+|||+.-+.-+..... ...++++|.++ ..|.+| +.+++ .+.++
T Consensus 257 e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~--~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~~~~ 334 (928)
T PRK08074 257 EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAK--KKEEPVVISTYTIQLQQQLLEKDIPLLQKIFP 334 (928)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhh--ccCCeEEEEcCCHHHHHHHHHhhHHHHHHHcC
Confidence 6899999999989888888877788889999999855332222222 22368888888 555556 66654 34443
Q ss_pred -CceEEeecCC
Q psy13010 115 -DFKVVPYWGS 124 (573)
Q Consensus 115 -~~~v~~~~g~ 124 (573)
++++.+..|.
T Consensus 335 ~~~~~~~lKGr 345 (928)
T PRK08074 335 FPVEAALLKGR 345 (928)
T ss_pred CCceEEEEEcc
Confidence 3556655543
No 162
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.97 E-value=0.01 Score=57.33 Aligned_cols=118 Identities=15% Similarity=0.144 Sum_probs=68.7
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc-ccHH---HHHHHHHHHCCC
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA-STLH---NWQQEMERFVPD 115 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~-~l~~---qW~~el~~~~~~ 115 (573)
.+++-|+-++-.| .. |-|.=-.+|=|||+++. +...+....+ +++=||+.. .|.. +|...+-+++ +
T Consensus 77 ~p~~vQll~~l~L----~~--G~laEm~TGEGKTli~~-l~a~~~AL~G--~~V~vvT~NdyLA~RD~~~~~~~y~~L-G 146 (266)
T PF07517_consen 77 RPYDVQLLGALAL----HK--GRLAEMKTGEGKTLIAA-LPAALNALQG--KGVHVVTSNDYLAKRDAEEMRPFYEFL-G 146 (266)
T ss_dssp ---HHHHHHHHHH----HT--TSEEEESTTSHHHHHHH-HHHHHHHTTS--S-EEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred cccHHHHhhhhhc----cc--ceeEEecCCCCcHHHHH-HHHHHHHHhc--CCcEEEeccHHHhhccHHHHHHHHHHh-h
Confidence 5777788776433 22 33777789999999884 4444443323 366677774 4444 4888888887 6
Q ss_pred ceEEeecCC-hh-HHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH---------hhhhccCccEEEEcccccc
Q psy13010 116 FKVVPYWGS-PQ-ERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF---------KYFNRIKWQYLILDEAQAI 180 (573)
Q Consensus 116 ~~v~~~~g~-~~-~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~---------~~l~~~~~~~vIiDE~h~~ 180 (573)
+.+-...+. .. .++.. ...+|+.++-..+..+. ......+++++|+||+..+
T Consensus 147 lsv~~~~~~~~~~~r~~~-------------Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 147 LSVGIITSDMSSEERREA-------------YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp --EEEEETTTEHHHHHHH-------------HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred hccccCccccCHHHHHHH-------------HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 666444443 32 22222 34468888777776542 1222457899999998765
No 163
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.96 E-value=0.15 Score=57.63 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=56.9
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCc
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQ 567 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~ 567 (573)
..|..++.+.+.++.+.|.-|||-|.+...-..|.++|...||++-.++.+.. ++-+++|.+=-....+
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~AG~~GaV 679 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEAGQPGTV 679 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhcCCCCcE
Confidence 46899999999999999999999999999999999999999999999988755 4445566554444433
No 164
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.92 E-value=0.0077 Score=56.01 Aligned_cols=131 Identities=19% Similarity=0.181 Sum_probs=66.7
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVV 119 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~ 119 (573)
+|.+-|++++..+.. ......+|.-..|+|||.....+...+... + .++++++|.+-.- .++.+-.. ....
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~-g--~~v~~~apT~~Aa---~~L~~~~~-~~a~ 71 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEAA-G--KRVIGLAPTNKAA---KELREKTG-IEAQ 71 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHHT-T----EEEEESSHHHH---HHHHHHHT-S-EE
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHhC-C--CeEEEECCcHHHH---HHHHHhhC-cchh
Confidence 478899999987644 222345777899999999876666655554 2 5889999964332 22333211 1111
Q ss_pred eecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcc-cCc
Q psy13010 120 PYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFS-CRN 198 (573)
Q Consensus 120 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~-~~~ 198 (573)
.+ ..+.............. ....++||+||+..+.... ....+.... ...
T Consensus 72 Ti----------~~~l~~~~~~~~~~~~~-----------------~~~~~vliVDEasmv~~~~--~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 72 TI----------HSFLYRIPNGDDEGRPE-----------------LPKKDVLIVDEASMVDSRQ--LARLLRLAKKSGA 122 (196)
T ss_dssp EH----------HHHTTEECCEECCSSCC------------------TSTSEEEESSGGG-BHHH--HHHHHHHS-T-T-
T ss_pred hH----------HHHHhcCCccccccccc-----------------CCcccEEEEecccccCHHH--HHHHHHHHHhcCC
Confidence 00 00000000000000000 2356799999999885442 333344443 367
Q ss_pred EEEEeccCCC
Q psy13010 199 RLLLSGTPIQ 208 (573)
Q Consensus 199 ~~lLTgTP~~ 208 (573)
++++.|-|.+
T Consensus 123 klilvGD~~Q 132 (196)
T PF13604_consen 123 KLILVGDPNQ 132 (196)
T ss_dssp EEEEEE-TTS
T ss_pred EEEEECCcch
Confidence 8999999876
No 165
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.89 E-value=0.0045 Score=63.38 Aligned_cols=48 Identities=17% Similarity=0.320 Sum_probs=32.5
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHH-HHHHHH
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNW-QQEMER 111 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW-~~el~~ 111 (573)
+|.-.+|+|||+.++.++..+... ......+++|+...+... ...+..
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~~-~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQNS-EEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhcc-ccCCceEEEEecchHHHHHHHHHhh
Confidence 666789999999999999988222 122466788886655554 444433
No 166
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.72 E-value=0.00045 Score=62.12 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=48.0
Q ss_pred ccccCCCCCCCCCCCCCcccCCCCCCCCcccccc-----------------cccCCchhhhhhhhHhhhhccCCCCc
Q psy13010 373 REEGTILPEFPHVPRDPVILPQQPTYLPVCFFES-----------------TQNMVSPALKKKIKIEDLIHSSSGGS 432 (573)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (573)
...+..|+||.+...+|++++|+|.||..|+.+. .....||.|+..+....++.....+.
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg~ 91 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQ 91 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccCC
Confidence 3456889999999999999999999999998642 12368999999998888776654444
No 167
>KOG1803|consensus
Probab=96.70 E-value=0.0037 Score=65.39 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=48.3
Q ss_pred hhhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHH
Q psy13010 37 FRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNW 105 (573)
Q Consensus 37 l~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW 105 (573)
+...|-+-|+.|+.+.... + .-.+|--++|+|||.+...+|..+...+ +.+||.+|.++.-.-
T Consensus 182 ~~~~ln~SQk~Av~~~~~~--k-~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdN 244 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAINN--K-DLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDN 244 (649)
T ss_pred CCccccHHHHHHHHHHhcc--C-CceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHH
Confidence 4457889999999877552 1 3346667999999999999998888764 589999997765543
No 168
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.68 E-value=0.012 Score=63.81 Aligned_cols=145 Identities=16% Similarity=0.204 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCC--CCCEEEEcCcccHHH-HHHHHHHHCCCceEE
Q psy13010 43 HYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDV--WGPFLIISPASTLHN-WQQEMERFVPDFKVV 119 (573)
Q Consensus 43 ~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~--~~~~LIV~P~~l~~q-W~~el~~~~~~~~v~ 119 (573)
+.|+.++..... +...+|.-.+|+|||.++..++..+....+. ...+++++|.+-.-. ..+.+......+..-
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 799999875543 5677999999999999998888877654322 136899999654443 443333322111100
Q ss_pred --eecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcccC
Q psy13010 120 --PYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCR 197 (573)
Q Consensus 120 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~ 197 (573)
+..........+.++.... . .+ ..+.. ..-....+++||+||+..+-.. ...+.+..+...
T Consensus 224 ~~~~~~~~~~a~TiHrlLg~~------~------~~-~~~~~--~~~~~l~~dvlIiDEaSMvd~~--l~~~ll~al~~~ 286 (586)
T TIGR01447 224 EALIAALPSEAVTIHRLLGIK------P------DT-KRFRH--HERNPLPLDVLVVDEASMVDLP--LMAKLLKALPPN 286 (586)
T ss_pred hhhhhccccccchhhhhhccc------C------Cc-chhhh--cccCCCcccEEEEcccccCCHH--HHHHHHHhcCCC
Confidence 0000000001111110000 0 00 00111 0111236899999999988654 345566677778
Q ss_pred cEEEEeccCCC
Q psy13010 198 NRLLLSGTPIQ 208 (573)
Q Consensus 198 ~~~lLTgTP~~ 208 (573)
.+++|.|=|.+
T Consensus 287 ~rlIlvGD~~Q 297 (586)
T TIGR01447 287 TKLILLGDKNQ 297 (586)
T ss_pred CEEEEECChhh
Confidence 89999998755
No 169
>KOG1805|consensus
Probab=96.60 E-value=0.02 Score=63.21 Aligned_cols=182 Identities=16% Similarity=0.121 Sum_probs=105.2
Q ss_pred HHHHhhccCCCCCCCCCccCCCCchhhh----ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhc
Q psy13010 12 KQRSQQFGSTTPSFSTEVERPQPGLFRG----NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY 87 (573)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~----~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~ 87 (573)
.-|.-.-....|.+-+.....+++.+.. .|-.-|+.|+...+.. ..-.+|--=+|+|||-++.+++..+...+
T Consensus 637 ~lRdlivd~~pP~f~~~~~~~~~p~~~~~~~~~LN~dQr~A~~k~L~a---edy~LI~GMPGTGKTTtI~~LIkiL~~~g 713 (1100)
T KOG1805|consen 637 ILRDLIVDLKPPKFVDALSKVLIPKIKKIILLRLNNDQRQALLKALAA---EDYALILGMPGTGKTTTISLLIKILVALG 713 (1100)
T ss_pred hHHHHhhhcCCchhhcccccccCchhhHHHHhhcCHHHHHHHHHHHhc---cchheeecCCCCCchhhHHHHHHHHHHcC
Confidence 3444455555666767666677776666 8999999998655442 22335555799999999999999988874
Q ss_pred CCCCCEEEEcC-cccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhhhccc--------ccCCCCceEEEeehHhHH
Q psy13010 88 DVWGPFLIISP-ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNL--------HTKDASFHVVITSYQLVV 158 (573)
Q Consensus 88 ~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~~i~i~sy~~~~ 158 (573)
+.+|+.+= -+.+.+=.-.+..+. ..++-+....+....++.+...... .....+..||.+|-=-+.
T Consensus 714 ---kkVLLtsyThsAVDNILiKL~~~~--i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~ 788 (1100)
T KOG1805|consen 714 ---KKVLLTSYTHSAVDNILIKLKGFG--IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN 788 (1100)
T ss_pred ---CeEEEEehhhHHHHHHHHHHhccC--cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC
Confidence 36777665 444444444444332 2333333334444445443210000 001122233333322221
Q ss_pred hhHhhhhccCccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCCC
Q psy13010 159 SDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208 (573)
Q Consensus 159 ~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~ 208 (573)
..-|...+||++|+|||..+.-|- .+.-+.-..+..|-|-+.+
T Consensus 789 --~plf~~R~FD~cIiDEASQI~lP~-----~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 789 --HPLFVNRQFDYCIIDEASQILLPL-----CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred --chhhhccccCEEEEccccccccch-----hhhhhhhcceEEEeccccc
Confidence 133445689999999998876553 3444555667777776655
No 170
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.58 E-value=0.029 Score=63.25 Aligned_cols=112 Identities=15% Similarity=0.131 Sum_probs=71.2
Q ss_pred ccCCCCCCCCCccCCCCchhhhccHHHHHHHHHHHHHHH----hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCE
Q psy13010 18 FGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLY----DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPF 93 (573)
Q Consensus 18 ~~~~~~~~~~~~~~~~p~~l~~~L~~~Q~~~v~~l~~~~----~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~ 93 (573)
+....|.+.....+.+|... .=+-+|-.|++.+.... ..|-.|+.-..+|.|||+.=.-++..+......++-+
T Consensus 388 ~~~~lp~~~~hk~~~~r~~~--~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~Rfs 465 (1110)
T TIGR02562 388 LSRELPAIQTHKYFCQRSAH--PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFA 465 (1110)
T ss_pred hhhcccchhchhhhccCCCC--CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEE
Confidence 44566778888878777533 35788999988776543 3455678889999999998777777776654434434
Q ss_pred EEEcCcccHHHHHHHHHHHC--CCceEEeecCChhHHHHH
Q psy13010 94 LIISPASTLHNWQQEMERFV--PDFKVVPYWGSPQERKIL 131 (573)
Q Consensus 94 LIV~P~~l~~qW~~el~~~~--~~~~v~~~~g~~~~~~~~ 131 (573)
+.+-=.+|.-|--+++++-. .+..+-|..|+...++..
T Consensus 466 iALGLRTLTLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~ 505 (1110)
T TIGR02562 466 IALGLRSLTLQTGHALKTRLNLSDDDLAVLIGGTAVQTLF 505 (1110)
T ss_pred EEccccceeccchHHHHHhcCCCccceEEEECHHHHHHHH
Confidence 44434555556555555433 345555566665544433
No 171
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.57 E-value=0.013 Score=63.76 Aligned_cols=146 Identities=16% Similarity=0.184 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcC-CCCCEEEEcCcccHHH-HHHHHHHHCCCceEE
Q psy13010 42 KHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYD-VWGPFLIISPASTLHN-WQQEMERFVPDFKVV 119 (573)
Q Consensus 42 ~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~-~~~~~LIV~P~~l~~q-W~~el~~~~~~~~v~ 119 (573)
.++|+.|+.-.. .....+|.-.+|+|||.++..++..+..... ....+++++|..-.-. -.+.+..-...+.+-
T Consensus 154 ~d~Qk~Av~~a~----~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~ 229 (615)
T PRK10875 154 VDWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 229 (615)
T ss_pred CHHHHHHHHHHh----cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc
Confidence 489999986432 3667799999999999999888887765322 2246888899655443 233232211111000
Q ss_pred --eecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcccC
Q psy13010 120 --PYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCR 197 (573)
Q Consensus 120 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~ 197 (573)
+-...+.....+.++.... .. + ..+.. ..-....+++||+||+..+-.. ...+.+..+...
T Consensus 230 ~~~~~~~~~~a~TiHrlLg~~---~~---------~-~~~~~--~~~~~l~~dvlIvDEaSMvd~~--lm~~ll~al~~~ 292 (615)
T PRK10875 230 DEQKKRIPEEASTLHRLLGAQ---PG---------S-QRLRY--HAGNPLHLDVLVVDEASMVDLP--MMARLIDALPPH 292 (615)
T ss_pred hhhhhcCCCchHHHHHHhCcC---CC---------c-cchhh--ccccCCCCCeEEEChHhcccHH--HHHHHHHhcccC
Confidence 0000000111122210000 00 0 00000 1111235799999999998543 345667778888
Q ss_pred cEEEEeccCCC
Q psy13010 198 NRLLLSGTPIQ 208 (573)
Q Consensus 198 ~~~lLTgTP~~ 208 (573)
.+++|-|=|-+
T Consensus 293 ~rlIlvGD~~Q 303 (615)
T PRK10875 293 ARVIFLGDRDQ 303 (615)
T ss_pred CEEEEecchhh
Confidence 89999998765
No 172
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.55 E-value=0.042 Score=61.39 Aligned_cols=82 Identities=16% Similarity=0.105 Sum_probs=50.1
Q ss_pred ccHHHHHHHHHHHHHHHhCC-----CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHH-HHHHHH--
Q psy13010 40 NLKHYQLKGMNWLANLYDQG-----INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHN-WQQEME-- 110 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~-----~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~q-W~~el~-- 110 (573)
..|+-|.+-+..+.+.+... ..+++=..+|+|||+-=+.-+...... ..++++|-+. ..|-+| +.++|-
T Consensus 25 e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~--~~k~vVIST~T~~LQeQL~~kDlP~l 102 (697)
T PRK11747 25 IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA--EKKKLVISTATVALQEQLVSKDLPLL 102 (697)
T ss_pred CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHhhhhhHH
Confidence 58999999988888888763 455677799999998543222222221 1247666666 444455 666663
Q ss_pred -HHCC-CceEEeecC
Q psy13010 111 -RFVP-DFKVVPYWG 123 (573)
Q Consensus 111 -~~~~-~~~v~~~~g 123 (573)
+.++ ++++.+..|
T Consensus 103 ~~~l~~~~~~~llKG 117 (697)
T PRK11747 103 LKISGLDFKFTLAKG 117 (697)
T ss_pred HHHcCCCceEEEEcC
Confidence 3332 355554443
No 173
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.48 E-value=0.045 Score=47.53 Aligned_cols=44 Identities=25% Similarity=0.280 Sum_probs=28.9
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNW 105 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW 105 (573)
+...++.-++|+|||..+-.++..+... ..+++++........+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~~~~~~~~ 62 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRP---GAPFLYLNASDLLEGL 62 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcC---CCCeEEEehhhhhhhh
Confidence 4556888999999999887777776532 1355555444433333
No 174
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.46 E-value=0.48 Score=53.49 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=48.1
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcC-CCCCEEEEcC-cccHHHHHHHHHHHC
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYD-VWGPFLIISP-ASTLHNWQQEMERFV 113 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~-~~~~~LIV~P-~~l~~qW~~el~~~~ 113 (573)
..|-|-|+++|.+ ..+..++....|+|||.+.+.-+.++....+ .+..+|+|+- ......-++.+.+..
T Consensus 8 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAA------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 4689999999852 2456677779999999999988888875322 3356888887 444444555555543
No 175
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.40 E-value=0.011 Score=55.24 Aligned_cols=115 Identities=16% Similarity=0.148 Sum_probs=74.6
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCC---c
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPD---F 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~---~ 116 (573)
.+|+-|.+.+..|++. ..+.+.++---||-|||-+++=++......+. +=+-+|+|+.++.|-.+-+...+.+ -
T Consensus 23 liR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~--~LvrviVpk~Ll~q~~~~L~~~lg~l~~r 99 (229)
T PF12340_consen 23 LIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGS--RLVRVIVPKALLEQMRQMLRSRLGGLLNR 99 (229)
T ss_pred eeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHHHHHHHHHHHhCC
Confidence 7999999999888763 44567788889999999998877777776533 4677899999999998888766533 3
Q ss_pred eEEeecCC---hhHHHHHHHHhhhcccccCCCCceEEEeehHhHHh
Q psy13010 117 KVVPYWGS---PQERKILRQFWDMKNLHTKDASFHVVITSYQLVVS 159 (573)
Q Consensus 117 ~v~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~ 159 (573)
+|+.+.-+ +.....+..+........ ....|++++.+.+.+
T Consensus 100 ~i~~lpFsR~~~~~~~~~~~~~~l~~~~~--~~~gill~~PEhilS 143 (229)
T PF12340_consen 100 RIYHLPFSRSTPLTPETLEKIRQLLEECM--RSGGILLATPEHILS 143 (229)
T ss_pred eeEEecccCCCCCCHHHHHHHHHHHHHHH--HcCCEEEeChHHHHH
Confidence 34333221 111222222221111111 233588888887654
No 176
>KOG0823|consensus
Probab=96.38 E-value=0.00086 Score=61.43 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=51.3
Q ss_pred hccccCCCCCCCCCCCCCcccCCCCCCCCccccc----ccccCCchhhhhhhhHhhhhccCCCCc
Q psy13010 372 EREEGTILPEFPHVPRDPVILPQQPTYLPVCFFE----STQNMVSPALKKKIKIEDLIHSSSGGS 432 (573)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (573)
.+....+|.||.+..++|++|.|+|.||=.|+.+ ...+..||-|+..++++.++..+--+.
T Consensus 43 ~~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~ 107 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGS 107 (230)
T ss_pred CCCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCC
Confidence 3566799999999999999999999999999863 345677799999999999887665555
No 177
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.37 E-value=0.03 Score=58.57 Aligned_cols=43 Identities=21% Similarity=0.121 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhCCCC---eEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 44 YQLKGMNWLANLYDQGIN---GILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 44 ~Q~~~v~~l~~~~~~~~~---~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
.|..++..|.+.+..+.- -|+.-+.|+|||..|..++..+...
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 466666666666665553 3899999999999999998887654
No 178
>KOG1132|consensus
Probab=96.25 E-value=0.03 Score=61.22 Aligned_cols=46 Identities=26% Similarity=0.263 Sum_probs=40.2
Q ss_pred CCCchhhhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHH
Q psy13010 32 PQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSI 77 (573)
Q Consensus 32 ~~p~~l~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~i 77 (573)
-.|-.+..++++-|++-+..++..+.....|++-+++|+|||+.-|
T Consensus 13 Gv~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLL 58 (945)
T KOG1132|consen 13 GVPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLL 58 (945)
T ss_pred CceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHH
Confidence 4566666788999999999999999999999999999999998654
No 179
>PRK04296 thymidine kinase; Provisional
Probab=96.22 E-value=0.017 Score=53.37 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=26.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
.++.-+||.|||..++.++..+...+ ++++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g---~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG---MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC---CeEEEEec
Confidence 37788999999999988888776542 46777755
No 180
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.21 E-value=0.03 Score=62.68 Aligned_cols=133 Identities=21% Similarity=0.196 Sum_probs=81.2
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceE
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKV 118 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v 118 (573)
..|.+-|++++..+. ...-.+|.-.+|+|||.++-+++..+...++ ..++++++|....-....+. +. .
T Consensus 322 ~~l~~~Q~~Ai~~~~----~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~-~~~v~l~ApTg~AA~~L~e~---~g-~-- 390 (720)
T TIGR01448 322 KGLSEEQKQALDTAI----QHKVVILTGGPGTGKTTITRAIIELAEELGG-LLPVGLAAPTGRAAKRLGEV---TG-L-- 390 (720)
T ss_pred CCCCHHHHHHHHHHH----hCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CceEEEEeCchHHHHHHHHh---cC-C--
Confidence 469999999997653 3556799999999999988888777665421 24788889977666544432 21 0
Q ss_pred EeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcccCc
Q psy13010 119 VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRN 198 (573)
Q Consensus 119 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~ 198 (573)
........+... ... ....... .....++||+||++.+.... ..+.+..+....
T Consensus 391 ----~a~Tih~lL~~~----------~~~--------~~~~~~~--~~~~~~llIvDEaSMvd~~~--~~~Ll~~~~~~~ 444 (720)
T TIGR01448 391 ----TASTIHRLLGYG----------PDT--------FRHNHLE--DPIDCDLLIVDESSMMDTWL--ALSLLAALPDHA 444 (720)
T ss_pred ----ccccHHHHhhcc----------CCc--------cchhhhh--ccccCCEEEEeccccCCHHH--HHHHHHhCCCCC
Confidence 011111111100 000 0000000 11357899999999985432 355566667778
Q ss_pred EEEEeccCCC
Q psy13010 199 RLLLSGTPIQ 208 (573)
Q Consensus 199 ~~lLTgTP~~ 208 (573)
+++|.|=|.+
T Consensus 445 rlilvGD~~Q 454 (720)
T TIGR01448 445 RLLLVGDTDQ 454 (720)
T ss_pred EEEEECcccc
Confidence 8999987765
No 181
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.03 E-value=0.61 Score=52.63 Aligned_cols=68 Identities=10% Similarity=0.059 Sum_probs=49.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcC-CCCCEEEEcC-cccHHHHHHHHHHHC
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYD-VWGPFLIISP-ASTLHNWQQEMERFV 113 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~-~~~~~LIV~P-~~l~~qW~~el~~~~ 113 (573)
.|-|-|+++|.+ ..+..++....|+|||.+...-+.++....+ .+..+|+|+- ......-++.+.+..
T Consensus 4 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 4 GLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred ccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 588999999852 3456788889999999999988888876422 3456888888 445555666665554
No 182
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.98 E-value=0.034 Score=54.27 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=20.9
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
..+|.-++|+|||..|-++...+...
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 34789999999999998887776543
No 183
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=95.88 E-value=0.0011 Score=44.34 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCcccCCCCCCCCcccccccc
Q psy13010 379 LPEFPHVPRDPVILPQQPTYLPVCFFESTQ 408 (573)
Q Consensus 379 ~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~ 408 (573)
|++|.+...+|+.++|+|.||..|+.+...
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~ 30 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWK 30 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHC
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHH
Confidence 689999999999999999999999765543
No 184
>KOG0949|consensus
Probab=95.88 E-value=0.06 Score=59.52 Aligned_cols=161 Identities=19% Similarity=0.248 Sum_probs=102.9
Q ss_pred cHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHH-HHH-CCCc-
Q psy13010 41 LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEM-ERF-VPDF- 116 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el-~~~-~~~~- 116 (573)
.-.+|.+-+ .....+...+|...+-.|||...--++....+... .+-++.|+| +.++.|=..++ .++ ++.+
T Consensus 512 Pd~WQ~elL----DsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD-~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 512 PDEWQRELL----DSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESD-SDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CcHHHHHHh----hhhhcccceEEEeeccCCceeccHHHHHHHHhhcC-CCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 345676664 44566778888889999999999999998888744 478899999 88888876666 344 2221
Q ss_pred eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh---hh--ccCccEEEEcccccccCcch-HHHHH
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY---FN--RIKWQYLILDEAQAIKSSSS-MRWKL 190 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~---l~--~~~~~~vIiDE~h~~kn~~s-~~~~~ 190 (573)
+..-..|+ ..+.+ .-......|.||-.+-+.+..-. -. .-+..++|+||+|.+++..- ..+..
T Consensus 587 rg~sl~g~-----ltqEY------sinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eq 655 (1330)
T KOG0949|consen 587 RGVSLLGD-----LTQEY------SINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQ 655 (1330)
T ss_pred cchhhHhh-----hhHHh------cCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHH
Confidence 11111221 11111 11124668999999988764321 11 12567999999999998764 44444
Q ss_pred HHhcccCcEEEEeccCCCCCHHHHHHHHH
Q psy13010 191 LLGFSCRNRLLLSGTPIQNSMAELWALLH 219 (573)
Q Consensus 191 ~~~l~~~~~~lLTgTP~~n~~~el~~ll~ 219 (573)
+-.+-....+.||||-- ++..++.-++
T Consensus 656 ll~li~CP~L~LSATig--N~~l~qkWln 682 (1330)
T KOG0949|consen 656 LLLLIPCPFLVLSATIG--NPNLFQKWLN 682 (1330)
T ss_pred HHHhcCCCeeEEecccC--CHHHHHHHHH
Confidence 44455667899999954 3444444333
No 185
>KOG0950|consensus
Probab=95.86 E-value=0.14 Score=56.80 Aligned_cols=154 Identities=18% Similarity=0.127 Sum_probs=95.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHH-HHhhhcCCCCCEEEEcCc-ccHHHHHHHHHHHCC--C
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLC-HIAETYDVWGPFLIISPA-STLHNWQQEMERFVP--D 115 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~-~~~~~~~~~~~~LIV~P~-~l~~qW~~el~~~~~--~ 115 (573)
.++++|-+.+. ......+.+.|.+.+++.|||+.+=-++. ..... .+.+|.+.|- +.+..=..++.-+.. +
T Consensus 223 ~~fewq~ecls--~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~---rr~~llilp~vsiv~Ek~~~l~~~~~~~G 297 (1008)
T KOG0950|consen 223 KLFEWQAECLS--LPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR---RRNVLLILPYVSIVQEKISALSPFSIDLG 297 (1008)
T ss_pred HHHHHHHHHhc--chhhhcccceEEeCCCccchHHHHHHHHHHHHHHH---hhceeEecceeehhHHHHhhhhhhccccC
Confidence 57788877764 23334677889999999999998833333 22222 1467888884 444445555555442 3
Q ss_pred ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhcc----CccEEEEcccccccCcch--HHHH
Q psy13010 116 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRI----KWQYLILDEAQAIKSSSS--MRWK 189 (573)
Q Consensus 116 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~----~~~~vIiDE~h~~kn~~s--~~~~ 189 (573)
+.|-.|.|.-. ..+....-.+.++|-++.......+... ..++||+||-|.+....- -.-.
T Consensus 298 ~~ve~y~g~~~-------------p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~ 364 (1008)
T KOG0950|consen 298 FPVEEYAGRFP-------------PEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILEL 364 (1008)
T ss_pred CcchhhcccCC-------------CCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHH
Confidence 55555555321 1123355679999999998877665543 357999999999965431 1111
Q ss_pred HHHhc----ccC--cEEEEeccCCCCCH
Q psy13010 190 LLLGF----SCR--NRLLLSGTPIQNSM 211 (573)
Q Consensus 190 ~~~~l----~~~--~~~lLTgTP~~n~~ 211 (573)
.+.++ ... ..+++|||-.++..
T Consensus 365 ~l~k~~y~~~~~~~~iIGMSATi~N~~l 392 (1008)
T KOG0950|consen 365 LLAKILYENLETSVQIIGMSATIPNNSL 392 (1008)
T ss_pred HHHHHHHhccccceeEeeeecccCChHH
Confidence 11111 122 37999999877653
No 186
>PRK06526 transposase; Provisional
Probab=95.86 E-value=0.078 Score=51.33 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHH
Q psy13010 46 LKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMER 111 (573)
Q Consensus 46 ~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~ 111 (573)
+.+..|+ ..+.+.+|.-.+|+|||..+.++...+...+ .+++++. ..+|.+++..
T Consensus 89 l~~~~fi----~~~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~t----~~~l~~~l~~ 143 (254)
T PRK06526 89 LGTLDFV----TGKENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFAT----AAQWVARLAA 143 (254)
T ss_pred HhcCchh----hcCceEEEEeCCCCchHHHHHHHHHHHHHCC---Cchhhhh----HHHHHHHHHH
Confidence 4444555 3466778888999999999999988877653 2444432 3457666643
No 187
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.86 E-value=0.093 Score=57.68 Aligned_cols=42 Identities=24% Similarity=0.217 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCC---CeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGI---NGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~---~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|...+..|.+.+..+. .-||.-..|+|||..+..+...+...
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 6666666666665543 23888999999999999999888754
No 188
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.86 E-value=0.12 Score=56.08 Aligned_cols=42 Identities=21% Similarity=0.156 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCC---CeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGI---NGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~---~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|...+..|.+.+..+. .-||.-+.|+|||.++..+...+...
T Consensus 21 Qe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 21 QEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred cHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4444444555555443 23888999999999999999988763
No 189
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.80 E-value=0.13 Score=48.92 Aligned_cols=28 Identities=25% Similarity=0.018 Sum_probs=22.4
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
+...+|.-+.|+|||..+.++.......
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~ 65 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEER 65 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4456888999999999998888776643
No 190
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=95.73 E-value=0.0046 Score=44.55 Aligned_cols=48 Identities=13% Similarity=0.181 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCCCc-ccCCCCCCCCcccccccccCCchhhhhhhhHhhhh
Q psy13010 377 TILPEFPHVPRDPV-ILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLI 425 (573)
Q Consensus 377 ~~~~~~~~~~~~~~-~~~c~h~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 425 (573)
--|..|.+..+.|+ +..|+|.||..|+-+...+ .+|.|..++++.|+.
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~-~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS-ECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTTT-B-SSS--B-S-SS--
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC-CCCCcCChHHHHHHH
Confidence 46899999999997 6999999999999776554 499999999888764
No 191
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.70 E-value=0.057 Score=46.38 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=33.5
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHH
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQE 108 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~e 108 (573)
...+|.-.+|+|||..+..++..+.... ..++++.+......|...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~ 48 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQ 48 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHHH
Confidence 3457888999999999988877776542 367888887766655443
No 192
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.70 E-value=0.1 Score=53.11 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCCC---eEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGIN---GILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~---~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|.+++..+...+..+.. -+|.-+.|+|||..|..++..+...
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 34455667777766653 5889999999999999999988774
No 193
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=95.69 E-value=0.004 Score=45.99 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCcccccccc-cCCchhhhhhhhH
Q psy13010 377 TILPEFPHVPRDPVILPQQPTYLPVCFFESTQ-NMVSPALKKKIKI 421 (573)
Q Consensus 377 ~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~-~~~~~~~~~~~~~ 421 (573)
..|++|.+..++|++++|||.||..|+.+... ...||.++.....
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 47999999999999999999999999765533 3445555444433
No 194
>PRK08181 transposase; Validated
Probab=95.67 E-value=0.24 Score=48.33 Aligned_cols=47 Identities=19% Similarity=0.122 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
.+...|..++.+.......+.+.+|.-++|+|||..+.|+...+...
T Consensus 87 ~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 87 MVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN 133 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 35567777775543344566778999999999999999998887765
No 195
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.66 E-value=0.11 Score=56.41 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCC---CeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGI---NGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~---~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|...+..|.+.+..+. .-|+.-..|+|||..|.++...+...
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4445555556555443 23899999999999999888887654
No 196
>KOG0298|consensus
Probab=95.61 E-value=0.0053 Score=69.24 Aligned_cols=69 Identities=16% Similarity=0.095 Sum_probs=55.1
Q ss_pred cccHHHHHHHHHHHHh--CCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEEe
Q psy13010 498 AGKLSVLDDLLKRLKA--SGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGLL 572 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~--~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~Ll 572 (573)
++|+..+...+.-++- ...|||+||||...+|.++..+..++|.+.+..| + +.-...+..|.+ +.+|||
T Consensus 1202 g~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~-t--~d~~dc~~~fk~---I~clll 1272 (1394)
T KOG0298|consen 1202 GTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE-T--EDFDDCIICFKS---IDCLLL 1272 (1394)
T ss_pred ccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC-C--cchhhhhhhccc---ceEEEE
Confidence 6788888777776643 4689999999999999999999999999776654 3 356678888877 666665
No 197
>PLN03025 replication factor C subunit; Provisional
Probab=95.57 E-value=0.22 Score=50.24 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCC--CeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 45 QLKGMNWLANLYDQGI--NGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~--~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
|.+.+..+......+. ..++.-++|+|||..+.+++..+..
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4445555544444332 3588999999999999999888754
No 198
>KOG0320|consensus
Probab=95.50 E-value=0.0026 Score=55.67 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=40.1
Q ss_pred ccCCCCCCCCCCC--CCcccCCCCCCCCccccccc-ccCCchhhhhhhhHhhhh
Q psy13010 375 EGTILPEFPHVPR--DPVILPQQPTYLPVCFFEST-QNMVSPALKKKIKIEDLI 425 (573)
Q Consensus 375 ~~~~~~~~~~~~~--~~~~~~c~h~~~~~c~~~~~-~~~~~~~~~~~~~~~~~~ 425 (573)
.-..|++|.+... .|+.++|||.||..|+.... .-..||-|++.++..+++
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFH 183 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhhe
Confidence 4488999998554 45679999999999998774 457789999888776654
No 199
>PF13245 AAA_19: Part of AAA domain
Probab=95.42 E-value=0.079 Score=40.69 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=33.3
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhh--cCCCCCEEEEcCcccHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAET--YDVWGPFLIISPASTLHN 104 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~--~~~~~~~LIV~P~~l~~q 104 (573)
+.-.+|.-.+|+|||.+++..+..+... .+ .+++||++|....-.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAAD 56 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHH
Confidence 3334668899999999998888888743 22 468999999654443
No 200
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.42 E-value=0.17 Score=56.77 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCC--Ce-EEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGI--NG-ILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~--~~-ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|...+..|.+.+..+. .. ||.-+.|+|||..|..++..+...
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 4555555555554432 22 789999999999999999888654
No 201
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=95.42 E-value=2.4 Score=47.27 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=49.2
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCC
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~ 550 (573)
..|..++++.|.+....|..|||-|.+...-.++...|.+.||+...++.+-.
T Consensus 412 ~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h 464 (822)
T COG0653 412 EEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH 464 (822)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH
Confidence 45889999999999899999999999999999999999999999989988877
No 202
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.38 E-value=0.33 Score=43.55 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCCCe---EEeCCCCCCHHHHHHHHHHHHhhhcCC
Q psy13010 45 QLKGMNWLANLYDQGING---ILADEMGLGKTVQSIAFLCHIAETYDV 89 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~~---ll~de~G~GKT~~~ia~~~~~~~~~~~ 89 (573)
|.+.+..+.+.+..+.-. |+..+.|.||+..|.+++..++.....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 667777777777665432 888889999999999999999887544
No 203
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.36 E-value=0.18 Score=54.81 Aligned_cols=43 Identities=19% Similarity=0.095 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCCC---eEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 44 YQLKGMNWLANLYDQGIN---GILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 44 ~Q~~~v~~l~~~~~~~~~---~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
.|...+..|.+.+..+.- -|+.-..|+|||..|.+++..+...
T Consensus 17 Gq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 17 GQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 366666666666665432 2789999999999999999888754
No 204
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.34 E-value=0.26 Score=53.98 Aligned_cols=42 Identities=24% Similarity=0.182 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCCCC---eEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGIN---GILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~---~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|..++..|.+.+..+.- -|+.-+.|+|||..|..+...+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 55666666666665543 3789999999999999998888764
No 205
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.34 E-value=0.21 Score=53.59 Aligned_cols=43 Identities=23% Similarity=0.125 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhCCCC---eEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 44 YQLKGMNWLANLYDQGIN---GILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 44 ~Q~~~v~~l~~~~~~~~~---~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
-|...+..|.+.+..+.- -|+.-+.|+|||..|..+...+...
T Consensus 20 Gq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 20 GQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 356666666666654332 2889999999999999998888654
No 206
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.33 E-value=1.7 Score=49.22 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=45.7
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcC-CCCCEEEEcCc-ccHHHHHHHHHHH
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYD-VWGPFLIISPA-STLHNWQQEMERF 112 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~-~~~~~LIV~P~-~l~~qW~~el~~~ 112 (573)
.|-|-|+++|.+ ..+..++....|+|||.+.+.-+..+....+ .+..+|+++-. .....-++.+.+.
T Consensus 4 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 4 HLNPEQREAVKT------TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred ccCHHHHHHHhC------CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 588999999852 2455677789999999999988888876432 23467777773 3333344444433
No 207
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.24 E-value=0.27 Score=47.63 Aligned_cols=53 Identities=23% Similarity=0.347 Sum_probs=38.5
Q ss_pred HHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHH
Q psy13010 54 NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEM 109 (573)
Q Consensus 54 ~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el 109 (573)
..+..+.+.++.-.+|+|||..++|+...+... + .+++++.-+.++.+++..+
T Consensus 100 ~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~-g--~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 100 EFFERGENLVLLGPPGVGKTHLAIAIGNELLKA-G--ISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred HHhccCCcEEEECCCCCcHHHHHHHHHHHHHHc-C--CeEEEEEHHHHHHHHHHHH
Confidence 334467788999999999999999999999943 3 3666665555555555444
No 208
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.15 E-value=0.22 Score=47.70 Aligned_cols=41 Identities=15% Similarity=0.000 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHh--CCCCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 46 LKGMNWLANLYD--QGINGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 46 ~~~v~~l~~~~~--~~~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
..++..+..... .....+|.-+.|+|||..+.+++......
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~ 72 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR 72 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 334444443322 22345888899999999998888876654
No 209
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.12 E-value=0.085 Score=52.15 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=26.0
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCC-CCCEEEEc
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDV-WGPFLIIS 97 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~-~~~~LIV~ 97 (573)
+.+|.-++|+|||..|.++...+...+.. .++++.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 45788899999999998888877664322 23544444
No 210
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.10 E-value=0.19 Score=52.02 Aligned_cols=42 Identities=19% Similarity=0.129 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCC------------CeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGI------------NGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~------------~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|..++..+.+.+..+. .-|+.-+.|+|||..|.++...+...
T Consensus 10 q~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 10 QEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred hHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 5555555555554432 23789999999999999998887664
No 211
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.09 E-value=0.15 Score=51.39 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhc
Q psy13010 41 LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY 87 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~ 87 (573)
++|+|....+-+...-+-.-.-++.-+.|+|||..|.++...+.-..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~ 50 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEA 50 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888888776655311122237889999999999999999988653
No 212
>CHL00181 cbbX CbbX; Provisional
Probab=95.04 E-value=0.1 Score=51.57 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=27.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCC-CCCEEEEcCccc
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDV-WGPFLIISPAST 101 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~-~~~~LIV~P~~l 101 (573)
.+|.-++|+|||..|-++...+...+.. .++++.|....+
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 4888999999999999988877654322 235444443333
No 213
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.04 E-value=0.41 Score=49.24 Aligned_cols=129 Identities=15% Similarity=0.118 Sum_probs=70.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhc-CCCCCEEEEcCcccHHHHHHHHHHHCC--CceEEeecCChhHHHHHHHHhhhc
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETY-DVWGPFLIISPASTLHNWQQEMERFVP--DFKVVPYWGSPQERKILRQFWDMK 138 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~-~~~~~~LIV~P~~l~~qW~~el~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~ 138 (573)
.++.-.+|.|||.++.-+...+.... ...+++.+|+-..-..-=..++..|.. +..+
T Consensus 177 i~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv-------------------- 236 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV-------------------- 236 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce--------------------
Confidence 46778999999999877766655332 122456666553311110111333321 1111
Q ss_pred ccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcch---HHHHHHHhcc--cCcEEEEeccCCCCCHHH
Q psy13010 139 NLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSS---MRWKLLLGFS--CRNRLLLSGTPIQNSMAE 213 (573)
Q Consensus 139 ~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s---~~~~~~~~l~--~~~~~lLTgTP~~n~~~e 213 (573)
.+.-+++.+......+ .++++||+|++.+...... ...+.+.... ....+.|+||--.+...+
T Consensus 237 ----------~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~ 304 (388)
T PRK12723 237 ----------KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKE 304 (388)
T ss_pred ----------EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH
Confidence 1122334443333333 3689999999988643221 1222222222 245688999998888888
Q ss_pred HHHHHHhhC
Q psy13010 214 LWALLHFIM 222 (573)
Q Consensus 214 l~~ll~~L~ 222 (573)
++..+..+.
T Consensus 305 ~~~~~~~~~ 313 (388)
T PRK12723 305 IFHQFSPFS 313 (388)
T ss_pred HHHHhcCCC
Confidence 777766553
No 214
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.99 E-value=0.33 Score=48.71 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHHHHHHhCCCC---eEEeCCCCCCHHHHHHHHHHHHhhhc
Q psy13010 41 LKHYQLKGMNWLANLYDQGIN---GILADEMGLGKTVQSIAFLCHIAETY 87 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~~~~~---~ll~de~G~GKT~~~ia~~~~~~~~~ 87 (573)
++|+|...-+.+.+.+..+.. -++.-+.|+||+..|.++...+.-..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 578888888878777776553 27889999999999999999988753
No 215
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.94 E-value=0.26 Score=49.80 Aligned_cols=132 Identities=17% Similarity=0.115 Sum_probs=73.7
Q ss_pred cHHHHHHHHHHHHHHHhCCC--Ce-EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCce
Q psy13010 41 LKHYQLKGMNWLANLYDQGI--NG-ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFK 117 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~~~~--~~-ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~ 117 (573)
+.--|..++..+...+..+. .+ |+.-+.|.|||..|.+++..+....+..+. |.........-.....|++.
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-----~cg~C~~c~~~~~~~hpD~~ 81 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-----PCGTCTNCKRIDSGNHPDVH 81 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCcCHHHHHHhcCCCCCEE
Confidence 34456667776767665443 23 899999999999999999888764322111 44444443333344456665
Q ss_pred EEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhh----ccCccEEEEcccccccCcchHHHHHHHh
Q psy13010 118 VVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFN----RIKWQYLILDEAQAIKSSSSMRWKLLLG 193 (573)
Q Consensus 118 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~----~~~~~~vIiDE~h~~kn~~s~~~~~~~~ 193 (573)
++...|..-..+.++ ...+.+. ..++.++||||+|++... .....++.
T Consensus 82 ~i~~~~~~i~id~ir--------------------------~l~~~~~~~~~~~~~kvviI~~a~~~~~~--a~NaLLK~ 133 (329)
T PRK08058 82 LVAPDGQSIKKDQIR--------------------------YLKEEFSKSGVESNKKVYIIEHADKMTAS--AANSLLKF 133 (329)
T ss_pred EeccccccCCHHHHH--------------------------HHHHHHhhCCcccCceEEEeehHhhhCHH--HHHHHHHH
Confidence 554444322222222 2222111 236889999999998542 23334444
Q ss_pred cc---cCcEEEEecc
Q psy13010 194 FS---CRNRLLLSGT 205 (573)
Q Consensus 194 l~---~~~~~lLTgT 205 (573)
+. ..-.++|+++
T Consensus 134 LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 134 LEEPSGGTTAILLTE 148 (329)
T ss_pred hcCCCCCceEEEEeC
Confidence 42 3445555544
No 216
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.93 E-value=0.11 Score=51.60 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
+.--+|.-|+..+++ ..-.-..|.-.-|+|||+.|+|....--...+..++++|--|
T Consensus 228 prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp 284 (436)
T COG1875 228 PRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRP 284 (436)
T ss_pred cccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecC
Confidence 455678888764432 112233666789999999887554433222344456555444
No 217
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.92 E-value=0.37 Score=47.19 Aligned_cols=43 Identities=16% Similarity=0.071 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHHHHhCCC-----CeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 41 LKHYQLKGMNWLANLYDQGI-----NGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~~~~-----~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
-+|.=.++++.|.+++..+. +.+|.-+.|.|||.++--|...-
T Consensus 38 gY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 38 GYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred cCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 45666677777777665443 34888899999999876666543
No 218
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.89 E-value=0.22 Score=51.16 Aligned_cols=42 Identities=19% Similarity=0.118 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhCCC--C-eEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 44 YQLKGMNWLANLYDQGI--N-GILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 44 ~Q~~~v~~l~~~~~~~~--~-~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
-|...+..+.+.+..+. . .++.-+.|+|||..|.+++..+..
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 45666666666665443 2 389999999999999998888764
No 219
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.87 E-value=0.18 Score=51.16 Aligned_cols=64 Identities=16% Similarity=0.038 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCC--CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHH
Q psy13010 45 QLKGMNWLANLYDQGI--NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEM 109 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~--~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el 109 (573)
|...+..+.+....+. ..++.-++|+|||..+.+++..+..... ..+++.+-......+|...+
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~ 85 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPW-ENNFTEFNVADFFDQGKKYL 85 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCccc-ccceEEechhhhhhcchhhh
Confidence 4445555655555554 5689999999999999999888765321 12333333333344454444
No 220
>KOG0329|consensus
Probab=94.74 E-value=0.09 Score=49.17 Aligned_cols=132 Identities=18% Similarity=0.253 Sum_probs=78.0
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCC--CEEEEcC-cccHHHHHHHHHH---HCCCceEEeecCChhHHHHHHHHhh
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWG--PFLIISP-ASTLHNWQQEMER---FVPDFKVVPYWGSPQERKILRQFWD 136 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~--~~LIV~P-~~l~~qW~~el~~---~~~~~~v~~~~g~~~~~~~~~~~~~ 136 (573)
+--...|+|||.. -.+..+....+..| .+||+|- ..+..|-.+|..+ +.|+.++-++.|.-..++....+
T Consensus 83 lcqaksgmgktav--fvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~l-- 158 (387)
T KOG0329|consen 83 LCQAKSGMGKTAV--FVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELL-- 158 (387)
T ss_pred heecccCCCceee--eehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHH--
Confidence 4445689999964 33344443333333 4677787 5566677776655 56999999998874333222211
Q ss_pred hcccccCCCCceEEEeehHhHHhhH--hhhhccCccEEEEcccccccCcchHHHHHHHhc-----ccCcEEEEeccC
Q psy13010 137 MKNLHTKDASFHVVITSYQLVVSDF--KYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF-----SCRNRLLLSGTP 206 (573)
Q Consensus 137 ~~~~~~~~~~~~i~i~sy~~~~~~~--~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l-----~~~~~~lLTgTP 206 (573)
+ .-..|++-|...+.... ..+.--.....|+||+..+-.. -...+.++.+ ..+..+.+|||-
T Consensus 159 -----k--~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~-lDMrRDvQEifr~tp~~KQvmmfsatl 227 (387)
T KOG0329|consen 159 -----K--NCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQ-LDMRRDVQEIFRMTPHEKQVMMFSATL 227 (387)
T ss_pred -----h--CCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHH-HHHHHHHHHHhhcCcccceeeeeeeec
Confidence 1 25578888888775432 3444456678999999876321 1122333333 244567888884
No 221
>KOG0951|consensus
Probab=94.74 E-value=0.16 Score=57.84 Aligned_cols=105 Identities=19% Similarity=0.225 Sum_probs=73.2
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHH-----HHHHHHHHHCCCceEEeecCChhHHHHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLH-----NWQQEMERFVPDFKVVPYWGSPQERKILR 132 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~-----qW~~el~~~~~~~~v~~~~g~~~~~~~~~ 132 (573)
.+...+++...|+|||+.|-.++.. ....+.++.++|...+. .|.+.|.+- .+..++...|...-...+.
T Consensus 1158 ~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lkl~ 1232 (1674)
T KOG0951|consen 1158 TNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLKLL 1232 (1674)
T ss_pred ccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchHHh
Confidence 3446799999999999877322222 34457889999976654 488888766 4677777777544333222
Q ss_pred HHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccC
Q psy13010 133 QFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKS 182 (573)
Q Consensus 133 ~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn 182 (573)
...+++|.+.+.+.... .-...++.|+||.|.+..
T Consensus 1233 ------------~~~~vii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg 1267 (1674)
T KOG0951|consen 1233 ------------QKGQVIISTPEQWDLLQ---SIQQVDLFIVDELHLIGG 1267 (1674)
T ss_pred ------------hhcceEEechhHHHHHh---hhhhcceEeeehhhhhcc
Confidence 45579999999886653 223568999999999975
No 222
>PRK08116 hypothetical protein; Validated
Probab=94.68 E-value=0.55 Score=45.93 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=30.1
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHH
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLH 103 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~ 103 (573)
.+.+|.-++|+|||..+.+++..+...+ .+++++.-..++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~---~~v~~~~~~~ll~ 155 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKG---VPVIFVNFPQLLN 155 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEHHHHHH
Confidence 3568899999999999999999988752 3656554344443
No 223
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.68 E-value=0.44 Score=47.96 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=33.6
Q ss_pred ccHHHHHHHHH----HHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 40 NLKHYQLKGMN----WLANLYDQGINGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 40 ~L~~~Q~~~v~----~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
..+.++..++. |+-+....+.+.+|.-++|+|||..+.|++..+...
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 45666666665 332222245566888899999999999999988875
No 224
>KOG0738|consensus
Probab=94.64 E-value=0.17 Score=50.59 Aligned_cols=103 Identities=22% Similarity=0.316 Sum_probs=67.3
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhhhccc
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNL 140 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 140 (573)
|.++.-.+|+|||+.|-|+...+.. ++.=|....+...|+.|=.+.. +-
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc~t------TFFNVSsstltSKwRGeSEKlv------------------Rl------- 295 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATECGT------TFFNVSSSTLTSKWRGESEKLV------------------RL------- 295 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhhcC------eEEEechhhhhhhhccchHHHH------------------HH-------
Confidence 4588999999999999887776542 5677778888999987765532 10
Q ss_pred ccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccC--------cchHHHHH--HHhc--------ccCcEEEE
Q psy13010 141 HTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKS--------SSSMRWKL--LLGF--------SCRNRLLL 202 (573)
Q Consensus 141 ~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn--------~~s~~~~~--~~~l--------~~~~~~lL 202 (573)
..+.-.-+-+..|+|||...+.+ ..|.+.++ +.++ .++.++.|
T Consensus 296 -------------------LFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVL 356 (491)
T KOG0738|consen 296 -------------------LFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVL 356 (491)
T ss_pred -------------------HHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEE
Confidence 11111224577899999887733 11333333 2222 13457889
Q ss_pred eccCCCCCHHH
Q psy13010 203 SGTPIQNSMAE 213 (573)
Q Consensus 203 TgTP~~n~~~e 213 (573)
-||-++.+.+|
T Consensus 357 AATN~PWdiDE 367 (491)
T KOG0738|consen 357 AATNFPWDIDE 367 (491)
T ss_pred eccCCCcchHH
Confidence 99988877776
No 225
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.58 E-value=0.4 Score=51.40 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCCe---EEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGING---ILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~~---ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|..++..|...+..+.-. |+.-+.|+|||..|.+++..+...
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 555555565656555443 889999999999999999888654
No 226
>KOG2164|consensus
Probab=94.58 E-value=0.012 Score=60.28 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=44.1
Q ss_pred cCCCCCCCCCCCCCcccCCCCCCCCcccccc------cccCCchhhhhhhhHhhhhcc
Q psy13010 376 GTILPEFPHVPRDPVILPQQPTYLPVCFFES------TQNMVSPALKKKIKIEDLIHS 427 (573)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~------~~~~~~~~~~~~~~~~~~~~~ 427 (573)
+..|+||...+..|..+.|||+||-.|++.- ..-..||.|+..+...++..-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPV 243 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeee
Confidence 7899999999999999999999999998743 345789999998888776544
No 227
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.57 E-value=0.0096 Score=60.53 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=36.7
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCCccccccccc-CCchhhhhhh
Q psy13010 375 EGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQN-MVSPALKKKI 419 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~-~~~~~~~~~~ 419 (573)
....|++|.+...+|++++|+|.||..|+...... ..||.|+...
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~ 70 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAED 70 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcc
Confidence 45799999999999999999999999998755433 3577777665
No 228
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.55 E-value=0.62 Score=48.52 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCC---eEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGIN---GILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~---~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|..++..|.+.+..+.- -|+.-+.|+|||..|.++...+...
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 55555556666655432 3788999999999999999888754
No 229
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.53 E-value=0.28 Score=53.57 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhCCCC--e-EEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGIN--G-ILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~--~-ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|...+..|.+.+..+.. . |+.-..|+|||..+..+...+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 67777777777765543 2 889999999999999998888754
No 230
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.51 E-value=0.54 Score=53.27 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhCCCC---eEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGIN---GILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~---~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|...+..|.+.+..+.. -||.-..|+|||..+..+...+...
T Consensus 20 qe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 20 QEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred cHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 44444445454544332 3789999999999999999888753
No 231
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.45 E-value=0.25 Score=52.41 Aligned_cols=39 Identities=18% Similarity=0.099 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCC---eEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 48 GMNWLANLYDQGIN---GILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 48 ~v~~l~~~~~~~~~---~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
++..+.+.+..+.- .|+.-++|+|||..|-+++..+...
T Consensus 22 i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 22 VKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 34444444444332 3899999999999998888877653
No 232
>PRK08727 hypothetical protein; Validated
Probab=94.44 E-value=0.35 Score=46.26 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=22.2
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
..+|.-+.|+|||..+.+++..+...
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46889999999999999988887665
No 233
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.29 Score=52.70 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=47.9
Q ss_pred ccHHHHHHHHHHHHHHHh--------CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHH
Q psy13010 40 NLKHYQLKGMNWLANLYD--------QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMER 111 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~--------~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~ 111 (573)
..+....+++.|.+.... ...+.||.-.+|+|||+.|-++...+.. +++-|-...++..|..|..+
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~------~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS------RFISVKGSELLSKWVGESEK 322 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCC------eEEEeeCHHHhccccchHHH
Confidence 467777788877764443 3446699999999999999887774322 45555555999999888766
Q ss_pred H
Q psy13010 112 F 112 (573)
Q Consensus 112 ~ 112 (573)
.
T Consensus 323 ~ 323 (494)
T COG0464 323 N 323 (494)
T ss_pred H
Confidence 4
No 234
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.33 E-value=0.33 Score=52.21 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCCC---eEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGIN---GILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~---~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|..++..+.+.+..+.. -|+.-+.|+|||..|..++..+...
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44555555555655443 3789999999999999999887653
No 235
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.30 E-value=0.6 Score=49.53 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhCCC---CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEee
Q psy13010 45 QLKGMNWLANLYDQGI---NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~---~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~ 121 (573)
|...+..+.+.+..+. .-|+.-..|+|||.+|..+...+....+ +. .-|...+.....-.... +..++.+
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~---~~--~~pCg~C~~C~~i~~~~--~~Dv~ei 90 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNG---PT--SDPCGTCHNCISIKNSN--HPDVIEI 90 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCC---CC--CCCccccHHHHHHhccC--CCCEEEE
Confidence 4455555555555443 3489999999999999888877655432 21 23555555544332222 3445555
Q ss_pred cCCh-hHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcc---cC
Q psy13010 122 WGSP-QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFS---CR 197 (573)
Q Consensus 122 ~g~~-~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~---~~ 197 (573)
.++. ...+.++... +.+. ...+ ..++.++|+||+|.+... .....++.+. ..
T Consensus 91 daas~~~vddIR~Ii-------------------e~~~--~~P~-~~~~KVvIIDEah~Ls~~--A~NaLLK~LEePp~~ 146 (491)
T PRK14964 91 DAASNTSVDDIKVIL-------------------ENSC--YLPI-SSKFKVYIIDEVHMLSNS--AFNALLKTLEEPAPH 146 (491)
T ss_pred ecccCCCHHHHHHHH-------------------HHHH--hccc-cCCceEEEEeChHhCCHH--HHHHHHHHHhCCCCC
Confidence 4431 1122222110 0000 0011 136889999999998542 2222333342 33
Q ss_pred cEEEEeccCCC
Q psy13010 198 NRLLLSGTPIQ 208 (573)
Q Consensus 198 ~~~lLTgTP~~ 208 (573)
-+++++.|-..
T Consensus 147 v~fIlatte~~ 157 (491)
T PRK14964 147 VKFILATTEVK 157 (491)
T ss_pred eEEEEEeCChH
Confidence 45556555433
No 236
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.29 E-value=0.81 Score=44.69 Aligned_cols=44 Identities=20% Similarity=0.186 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHHHHHhCCC-CeEEeCCCCCCHHHHHHHHHHHHh
Q psy13010 41 LKHYQLKGMNWLANLYDQGI-NGILADEMGLGKTVQSIAFLCHIA 84 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~~~~-~~ll~de~G~GKT~~~ia~~~~~~ 84 (573)
..+.+..++..+...+..+. ..+|.-+.|+|||..+-.++..+.
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 44556667776655555444 357889999999988877766544
No 237
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.28 E-value=0.47 Score=51.63 Aligned_cols=72 Identities=17% Similarity=0.019 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhCCCC---eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEee
Q psy13010 45 QLKGMNWLANLYDQGIN---GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~---~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~ 121 (573)
|...+..+.+.+..+.. -|+.-+.|+|||..|-.+...+....+.. .-|...+.....-.. ..+..++.+
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-----~~pC~~C~~C~~i~~--g~~~dv~ei 93 (559)
T PRK05563 21 QEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-----GEPCNECEICKAITN--GSLMDVIEI 93 (559)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-----CCCCCccHHHHHHhc--CCCCCeEEe
Confidence 44455555555554432 27799999999999988888776543221 125555554322221 123455555
Q ss_pred cC
Q psy13010 122 WG 123 (573)
Q Consensus 122 ~g 123 (573)
.+
T Consensus 94 da 95 (559)
T PRK05563 94 DA 95 (559)
T ss_pred ec
Confidence 44
No 238
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=94.28 E-value=0.33 Score=46.04 Aligned_cols=66 Identities=20% Similarity=0.126 Sum_probs=39.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccH------HHHHHHH
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTL------HNWQQEM 109 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~------~qW~~el 109 (573)
-..+|+.....-....-...+.+.+.-++|+|||+..=|+....... .-++|+.|+..+ +-|..++
T Consensus 32 ~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l 103 (269)
T COG3267 32 WAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADL 103 (269)
T ss_pred hhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHh
Confidence 45566655554333333444456889999999999887555544432 344567775544 3365555
No 239
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.26 E-value=0.64 Score=49.69 Aligned_cols=43 Identities=16% Similarity=0.014 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhCCC---CeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 44 YQLKGMNWLANLYDQGI---NGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 44 ~Q~~~v~~l~~~~~~~~---~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
-|...+..+.+.+..+. ..|+.-+.|+|||.+|-.+...+...
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 45666666655555444 45899999999999999998888654
No 240
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.22 E-value=0.44 Score=48.20 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHHHHHHhCCCCe---EEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 41 LKHYQLKGMNWLANLYDQGING---ILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~~~~~~---ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
++|+|...-+.+.+.+..+... |+.-+.|+||+..|.++...+.-.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 6788888888887877665533 799999999999999999998764
No 241
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.19 E-value=0.53 Score=50.42 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCCCCe---EEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGING---ILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~~---ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|..++..|.+....+.-+ |+.-++|+|||..|.+++..+...
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 555666666666655444 899999999999999999888754
No 242
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.18 E-value=0.64 Score=49.33 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=32.0
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHH
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEM 109 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el 109 (573)
..+|.-++|+|||..+-++...+....+. ..++.+........+...+
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~-~~v~yi~~~~~~~~~~~~~ 197 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPN-AKVVYVTSEKFTNDFVNAL 197 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEEEHHHHHHHHHHHH
Confidence 45889999999999999999888765322 2445554444444444443
No 243
>KOG0926|consensus
Probab=94.16 E-value=0.068 Score=57.89 Aligned_cols=143 Identities=18% Similarity=0.178 Sum_probs=78.4
Q ss_pred HHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcC--CCCCEEEEc-CcccHH--H---HHHHHHHHCCCceE-Eeec
Q psy13010 52 LANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYD--VWGPFLIIS-PASTLH--N---WQQEMERFVPDFKV-VPYW 122 (573)
Q Consensus 52 l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~--~~~~~LIV~-P~~l~~--q---W~~el~~~~~~~~v-~~~~ 122 (573)
+++.+..+.-.|||-++|+|||.++=-|+....-... ..+.++=|+ |..+.- . =..|+..+-..... +-|.
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd 343 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFD 343 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEec
Confidence 4466677888899999999999998666654432211 111233343 432221 1 22444442212222 4455
Q ss_pred CChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH-hhhhccCccEEEEcccccccCcchHHH-------------
Q psy13010 123 GSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF-KYFNRIKWQYLILDEAQAIKSSSSMRW------------- 188 (573)
Q Consensus 123 g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~-~~l~~~~~~~vIiDE~h~~kn~~s~~~------------- 188 (573)
|+.... -.|-.+|-..+-++. ..|.-.++.+||+||||.= +-++.+.
T Consensus 344 ~ti~e~------------------T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHER-SvnTDILiGmLSRiV~LR~k 404 (1172)
T KOG0926|consen 344 GTIGED------------------TSIKFMTDGVLLREIENDFLLTKYSVIILDEAHER-SVNTDILIGMLSRIVPLRQK 404 (1172)
T ss_pred cccCCC------------------ceeEEecchHHHHHHHHhHhhhhceeEEechhhhc-cchHHHHHHHHHHHHHHHHH
Confidence 543221 235566666665543 4566678999999999973 2222111
Q ss_pred --HHHHhcccCcEEEEeccCCCCCHHH
Q psy13010 189 --KLLLGFSCRNRLLLSGTPIQNSMAE 213 (573)
Q Consensus 189 --~~~~~l~~~~~~lLTgTP~~n~~~e 213 (573)
+.-..++.-+.++||||.-..++.+
T Consensus 405 ~~ke~~~~kpLKLIIMSATLRVsDFte 431 (1172)
T KOG0926|consen 405 YYKEQCQIKPLKLIIMSATLRVSDFTE 431 (1172)
T ss_pred HhhhhcccCceeEEEEeeeEEeccccc
Confidence 1111122335699999976666554
No 244
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.98 E-value=0.96 Score=46.28 Aligned_cols=124 Identities=18% Similarity=0.220 Sum_probs=65.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc----ccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhhh
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA----STLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDM 137 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~----~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~ 137 (573)
..|.-..|.|||.++..+...+...+ ..+.+|... ..++||+.-.... +..+.+
T Consensus 244 I~LVGptGvGKTTTiaKLA~~L~~~G---kkVglI~aDt~RiaAvEQLk~yae~l--gipv~v----------------- 301 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKK---KTVGFITTDHSRIGTVQQLQDYVKTI--GFEVIA----------------- 301 (436)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC---CcEEEEecCCcchHHHHHHHHHhhhc--CCcEEe-----------------
Confidence 35666899999999988877765432 356666652 3556665422221 222221
Q ss_pred cccccCCCCceEEEeehHhHHhhHhhhhc-cCccEEEEcccccccCcchHHHHHHHhc----ccC-cEEEEeccCCCCCH
Q psy13010 138 KNLHTKDASFHVVITSYQLVVSDFKYFNR-IKWQYLILDEAQAIKSSSSMRWKLLLGF----SCR-NRLLLSGTPIQNSM 211 (573)
Q Consensus 138 ~~~~~~~~~~~i~i~sy~~~~~~~~~l~~-~~~~~vIiDE~h~~kn~~s~~~~~~~~l----~~~-~~~lLTgTP~~n~~ 211 (573)
..+...+......+.. .++++|++|.+-+..+.. .....+..+ ... ..+.|+||--.+..
T Consensus 302 -------------~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~-~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 302 -------------VRDEAAMTRALTYFKEEARVDYILIDTAGKNYRAS-ETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred -------------cCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCH-HHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 1122333333334432 368999999997643322 222222222 222 23557777666666
Q ss_pred HHHHHHHHhh
Q psy13010 212 AELWALLHFI 221 (573)
Q Consensus 212 ~el~~ll~~L 221 (573)
.++...++-+
T Consensus 368 ~~i~~~F~~~ 377 (436)
T PRK11889 368 IEIITNFKDI 377 (436)
T ss_pred HHHHHHhcCC
Confidence 6666555544
No 245
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=93.88 E-value=0.0052 Score=41.14 Aligned_cols=29 Identities=17% Similarity=0.356 Sum_probs=17.4
Q ss_pred CCCCCCCCCC----CcccCCCCCCCCcccccccc
Q psy13010 379 LPEFPHVPRD----PVILPQQPTYLPVCFFESTQ 408 (573)
Q Consensus 379 ~~~~~~~~~~----~~~~~c~h~~~~~c~~~~~~ 408 (573)
|++|.+ ..+ |.+++|||.||.+|+.+-..
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~ 33 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSK 33 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHh
Confidence 566766 455 89999999999999765433
No 246
>KOG0922|consensus
Probab=93.81 E-value=0.2 Score=53.44 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=80.9
Q ss_pred HHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHH-HHHHHH-HHC-CCceEEee----cCC
Q psy13010 52 LANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHN-WQQEME-RFV-PDFKVVPY----WGS 124 (573)
Q Consensus 52 l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~q-W~~el~-~~~-~~~~v~~~----~g~ 124 (573)
++....++.-.|+.-|+|+|||.++==++....... .|.+-+.-|..+.-. -.+... +.. .-..-+-| ..+
T Consensus 59 il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~--~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ 136 (674)
T KOG0922|consen 59 ILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFAS--SGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDS 136 (674)
T ss_pred HHHHHHHCCEEEEEcCCCCCccccHhHHHHhccccc--CCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEeccc
Confidence 345556677889999999999999876665544432 245555556444332 222222 211 00111212 221
Q ss_pred hhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH--hhhhccCccEEEEcccccccCcchHHHHHHHhc---ccC-c
Q psy13010 125 PQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF--KYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF---SCR-N 198 (573)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~--~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l---~~~-~ 198 (573)
.. ..=.|...|=..+-++. +.+ -.++.+||+||||.=.-.+--..-.++++ +.. +
T Consensus 137 ts------------------~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 137 TS------------------KDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLK 197 (674)
T ss_pred CC------------------CceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCce
Confidence 11 11235555555554432 222 24789999999997322222222223333 333 6
Q ss_pred EEEEeccCCCCCHHHHHHHHHhh
Q psy13010 199 RLLLSGTPIQNSMAELWALLHFI 221 (573)
Q Consensus 199 ~~lLTgTP~~n~~~el~~ll~~L 221 (573)
.+++|||--...++++|+....+
T Consensus 198 lIimSATlda~kfS~yF~~a~i~ 220 (674)
T KOG0922|consen 198 LIIMSATLDAEKFSEYFNNAPIL 220 (674)
T ss_pred EEEEeeeecHHHHHHHhcCCceE
Confidence 78999998888888877764444
No 247
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.74 E-value=0.47 Score=49.60 Aligned_cols=36 Identities=25% Similarity=0.176 Sum_probs=26.7
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS 97 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~ 97 (573)
..+|.-.+|+|||..+-++...+....+. ..++.+.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~-~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPN-AKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCC-CcEEEEE
Confidence 34789999999999999999888765322 3455553
No 248
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.74 E-value=0.79 Score=47.05 Aligned_cols=87 Identities=14% Similarity=0.191 Sum_probs=54.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhhhcccc
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLH 141 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~ 141 (573)
.+|.-++|.|||..++.++..+...+ +++|+|.-..-..|.+....+..-..
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g---~~VlYvs~EEs~~qi~~Ra~rlg~~~------------------------- 136 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRG---GKVLYVSGEESPEQIKLRADRLGIST------------------------- 136 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEEECCcCHHHHHHHHHHcCCCc-------------------------
Confidence 48899999999999988887776542 47888876555555554443331100
Q ss_pred cCCCCceEEEeehHhHHhhHhhhhccCccEEEEccccccc
Q psy13010 142 TKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIK 181 (573)
Q Consensus 142 ~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~k 181 (573)
-.+.+.....+..-...+...++++||+|+.+.+.
T Consensus 137 -----~~l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 137 -----ENLYLLAETNLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred -----ccEEEEccCcHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 01222222223333344556689999999998874
No 249
>PRK06893 DNA replication initiation factor; Validated
Probab=93.73 E-value=0.4 Score=45.72 Aligned_cols=25 Identities=16% Similarity=-0.085 Sum_probs=21.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
.+|.-++|+|||..+.|++..+...
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3788999999999999999887765
No 250
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.71 E-value=0.12 Score=56.00 Aligned_cols=172 Identities=15% Similarity=0.197 Sum_probs=101.1
Q ss_pred CCCchhhhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHH-HHH
Q psy13010 32 PQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQ-QEM 109 (573)
Q Consensus 32 ~~p~~l~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~-~el 109 (573)
..|........|||.+.++.|-. ..-....+.-..-+|||.+++.++.+..... ++|+|+|.| ......|. ..|
T Consensus 8 ~~pG~w~~~~~Py~~eimd~~~~--~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~--P~~~l~v~Pt~~~a~~~~~~rl 83 (557)
T PF05876_consen 8 AEPGPWRTDRTPYLREIMDALSD--PSVREVVVMKSAQVGKTELLLNWIGYSIDQD--PGPMLYVQPTDDAAKDFSKERL 83 (557)
T ss_pred CCCCCCCCCCChhHHHHHHhcCC--cCccEEEEEEcchhhHhHHHHhhceEEEEeC--CCCEEEEEEcHHHHHHHHHHHH
Confidence 34555666899999999865422 1123456677888999998888777766653 379999999 66666775 444
Q ss_pred HHHC---CCceEEeecC-ChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEccccccc----
Q psy13010 110 ERFV---PDFKVVPYWG-SPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIK---- 181 (573)
Q Consensus 110 ~~~~---~~~~v~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~k---- 181 (573)
...+ |.++-.+... ++.....+. .+......+.++...+. ..|.....+++++||...+-
T Consensus 84 ~Pmi~~sp~l~~~~~~~~~~~~~~t~~--------~k~f~gg~l~~~ga~S~----~~l~s~~~r~~~~DEvD~~p~~~~ 151 (557)
T PF05876_consen 84 DPMIRASPVLRRKLSPSKSRDSGNTIL--------YKRFPGGFLYLVGANSP----SNLRSRPARYLLLDEVDRYPDDVG 151 (557)
T ss_pred HHHHHhCHHHHHHhCchhhcccCCchh--------heecCCCEEEEEeCCCC----cccccCCcCEEEEechhhccccCc
Confidence 4332 3322111110 000000000 01112223444443332 45667788999999999882
Q ss_pred CcchHHHHH---HHhcccCcEEEEeccCCCCCHHHHHHHHH
Q psy13010 182 SSSSMRWKL---LLGFSCRNRLLLSGTPIQNSMAELWALLH 219 (573)
Q Consensus 182 n~~s~~~~~---~~~l~~~~~~lLTgTP~~n~~~el~~ll~ 219 (573)
+..+....+ ...+....++++..||.....+.+...+.
T Consensus 152 ~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~~~ 192 (557)
T PF05876_consen 152 GEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERLYE 192 (557)
T ss_pred cCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHHHH
Confidence 222333333 33344678899999999887666665554
No 251
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=93.61 E-value=0.0085 Score=39.37 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=24.7
Q ss_pred CCCCCCCCCCC-cccCCCCCCCCcccccccc
Q psy13010 379 LPEFPHVPRDP-VILPQQPTYLPVCFFESTQ 408 (573)
Q Consensus 379 ~~~~~~~~~~~-~~~~c~h~~~~~c~~~~~~ 408 (573)
|++|.+...+| ++++|||.||..|+.+...
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~ 31 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLE 31 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHH
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHH
Confidence 67899999999 6899999999999776544
No 252
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.60 E-value=1.4 Score=46.54 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=27.4
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
..+|.-++|+|||..+-++...+....+. ..++.+..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~-~~v~yi~~ 168 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPD-LRVMYITS 168 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCC-CeEEEEEH
Confidence 46889999999999999999888765332 24555543
No 253
>KOG0989|consensus
Probab=93.60 E-value=0.42 Score=46.48 Aligned_cols=43 Identities=23% Similarity=0.165 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhCCC--CeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 43 HYQLKGMNWLANLYDQGI--NGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 43 ~~Q~~~v~~l~~~~~~~~--~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
-.|...|+-|.+....+. .-++.-++|+|||-+|+++.+.+..
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 368888888887776522 2288889999999999999998876
No 254
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.55 E-value=1.8 Score=47.60 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCCC---CeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGI---NGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~---~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|...+..|.+.+..+. .-||.-..|+|||..|.++...+...
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 5555555555555443 23889999999999999988887654
No 255
>PRK05642 DNA replication initiation factor; Validated
Probab=93.54 E-value=0.88 Score=43.54 Aligned_cols=27 Identities=15% Similarity=0.009 Sum_probs=21.1
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
...+|.-+.|+|||..+-|+...+...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~ 72 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR 72 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345788999999999988887766543
No 256
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.46 E-value=1.4 Score=47.49 Aligned_cols=43 Identities=19% Similarity=0.113 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhCCC---CeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 44 YQLKGMNWLANLYDQGI---NGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 44 ~Q~~~v~~l~~~~~~~~---~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
-|...+..+.+.+..+. .-|+.-+.|+|||..|..+...+...
T Consensus 20 Gq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 20 GQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred CcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34555555555555433 22799999999999999888887653
No 257
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.46 E-value=1 Score=47.09 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=35.4
Q ss_pred CccEEEEcccccccCcchHHHHHHHhc------ccCcEEEEeccCCCCCHHHHHHHHHhhCC
Q psy13010 168 KWQYLILDEAQAIKSSSSMRWKLLLGF------SCRNRLLLSGTPIQNSMAELWALLHFIMP 223 (573)
Q Consensus 168 ~~~~vIiDE~h~~kn~~s~~~~~~~~l------~~~~~~lLTgTP~~n~~~el~~ll~~L~~ 223 (573)
.+++||||.+-+.... ......+..+ .....++|++|+-.+...+++..++.+..
T Consensus 299 ~~DlVlIDt~G~~~~d-~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRD-KRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCC-HHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 5799999999664332 2222222222 12447889999888888888777776644
No 258
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.38 E-value=1.2 Score=44.63 Aligned_cols=48 Identities=17% Similarity=0.028 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCC---eEEeCCCCCCHHHHHHHHHHHHhhhc
Q psy13010 40 NLKHYQLKGMNWLANLYDQGIN---GILADEMGLGKTVQSIAFLCHIAETY 87 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~---~ll~de~G~GKT~~~ia~~~~~~~~~ 87 (573)
.++|+|...-+.+.+.+..+.- -++..+.|+||+..|.++...+.-..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 4678888888888777765553 38899999999999999999888754
No 259
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.37 E-value=1.1 Score=45.95 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHHHH-Hh--CCCCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 41 LKHYQLKGMNWLANL-YD--QGINGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~-~~--~~~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
=++.|++.+...+.. .. .+...+|.-++|+|||.++-+++..+...
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 467777776433332 22 23456889999999999999998877643
No 260
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.33 E-value=0.95 Score=47.86 Aligned_cols=49 Identities=16% Similarity=0.005 Sum_probs=32.6
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHH
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEM 109 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el 109 (573)
++.+|.-++|+|||..+-|+...+....+. ..++.|.+...+......+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~-~~v~yv~~~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSD-LKVSYMSGDEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCC-CeEEEEEHHHHHHHHHHHH
Confidence 345789999999999998888877654322 3556665555444444444
No 261
>KOG0287|consensus
Probab=93.31 E-value=0.0096 Score=57.26 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=35.9
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCcccccccc-cCCchhhhhhh
Q psy13010 377 TILPEFPHVPRDPVILPQQPTYLPVCFFESTQ-NMVSPALKKKI 419 (573)
Q Consensus 377 ~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~-~~~~~~~~~~~ 419 (573)
-.|.||.+..+.|++++|+|.||.-|+-.... ...||.|....
T Consensus 24 LRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~ 67 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTV 67 (442)
T ss_pred HHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceeccc
Confidence 45999999999999999999999999877644 46777776655
No 262
>PRK06921 hypothetical protein; Provisional
Probab=93.28 E-value=1.2 Score=43.40 Aligned_cols=28 Identities=21% Similarity=0.056 Sum_probs=23.9
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
+.+.+|.-++|+|||..+.|++..+...
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 4566888899999999999999988765
No 263
>PRK14974 cell division protein FtsY; Provisional
Probab=93.25 E-value=1.7 Score=43.85 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=31.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc----ccHHHHHHHHHH
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA----STLHNWQQEMER 111 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~----~l~~qW~~el~~ 111 (573)
.++.-.+|.|||.++..++..+...+ .+++++... ...+||......
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~g---~~V~li~~Dt~R~~a~eqL~~~a~~ 193 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKNG---FSVVIAAGDTFRAGAIEQLEEHAER 193 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCcCcHHHHHHHHHHHHH
Confidence 46778999999998877777665542 356666653 445677554443
No 264
>PHA02929 N1R/p28-like protein; Provisional
Probab=93.19 E-value=0.032 Score=52.74 Aligned_cols=46 Identities=7% Similarity=0.018 Sum_probs=34.2
Q ss_pred cccCCCCCCCCCCCCC--------cccCCCCCCCCcccccc-cccCCchhhhhhh
Q psy13010 374 EEGTILPEFPHVPRDP--------VILPQQPTYLPVCFFES-TQNMVSPALKKKI 419 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~--------~~~~c~h~~~~~c~~~~-~~~~~~~~~~~~~ 419 (573)
..+..|++|.+...++ ++++|+|.||..|+..- .....||.||...
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 4568999999864442 56799999999998644 3456788887654
No 265
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.15 E-value=0.82 Score=49.59 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=60.2
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhhhccc
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNL 140 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 140 (573)
..+|.-..|+|||..+.|++..+...... ..++.+....++..+...+...
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g-~~V~Yitaeef~~el~~al~~~---------------------------- 366 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPG-TRVRYVSSEEFTNEFINSIRDG---------------------------- 366 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEeeHHHHHHHHHHHHHhc----------------------------
Confidence 46888999999999999999887754221 3555555554454444443220
Q ss_pred ccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcch---HHHHHHHhc-ccCcEEEEeccCCCC
Q psy13010 141 HTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSS---MRWKLLLGF-SCRNRLLLSGTPIQN 209 (573)
Q Consensus 141 ~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s---~~~~~~~~l-~~~~~~lLTgTP~~n 209 (573)
.++.|.. .+. ..++||||+.+.+.+..+ ..+..+..+ .....+++|+.-.+.
T Consensus 367 ------------~~~~f~~---~y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~ 422 (617)
T PRK14086 367 ------------KGDSFRR---RYR--EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPK 422 (617)
T ss_pred ------------cHHHHHH---Hhh--cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChH
Confidence 0111111 122 469999999999976543 233333333 234557777664443
No 266
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.10 E-value=0.71 Score=51.12 Aligned_cols=43 Identities=19% Similarity=0.134 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCCCCe---EEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 44 YQLKGMNWLANLYDQGING---ILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 44 ~Q~~~v~~l~~~~~~~~~~---ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
.|..+++.+.+.+..+... |+.-+.|+|||..|-+++..+...
T Consensus 22 GQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 22 GQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 3556666666666654432 789999999999999988887654
No 267
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.09 E-value=0.8 Score=50.38 Aligned_cols=43 Identities=16% Similarity=-0.001 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhCCCCe---EEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 44 YQLKGMNWLANLYDQGING---ILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 44 ~Q~~~v~~l~~~~~~~~~~---ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
.|.+++..|.+.+..+... |+.-+.|+|||..|.+++..+...
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 3555666666666655433 889999999999999999988764
No 268
>KOG0740|consensus
Probab=93.05 E-value=0.96 Score=46.62 Aligned_cols=46 Identities=26% Similarity=0.301 Sum_probs=36.8
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHH
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERF 112 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~ 112 (573)
+.+++-++|.|||+.+-+++..... .+-=|.|.++...|..|-.+.
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~~a------tff~iSassLtsK~~Ge~eK~ 233 (428)
T KOG0740|consen 188 GLLLFGPPGTGKTMLAKAIATESGA------TFFNISASSLTSKYVGESEKL 233 (428)
T ss_pred hhheecCCCCchHHHHHHHHhhhcc------eEeeccHHHhhhhccChHHHH
Confidence 4488999999999999887776544 567799999999998777543
No 269
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=93.03 E-value=0.26 Score=55.33 Aligned_cols=147 Identities=16% Similarity=0.101 Sum_probs=77.1
Q ss_pred HHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHH-HHHHHHHHCCC--ceEEeec---CChh
Q psy13010 53 ANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHN-WQQEMERFVPD--FKVVPYW---GSPQ 126 (573)
Q Consensus 53 ~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~q-W~~el~~~~~~--~~v~~~~---g~~~ 126 (573)
...+..+.-.+|.-++|+|||.+.=-++..... ...+.+.+.=|..+.-- =.+.+.+-... ...+-|. .+..
T Consensus 59 ~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~ 136 (845)
T COG1643 59 LKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKV 136 (845)
T ss_pred HHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccC
Confidence 345566778899999999999988666665544 22245555555443322 22222222211 1122221 1111
Q ss_pred HHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH-hhhhccCccEEEEcccccc-cCcch--HHHHH-HHhccc-CcEE
Q psy13010 127 ERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF-KYFNRIKWQYLILDEAQAI-KSSSS--MRWKL-LLGFSC-RNRL 200 (573)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~-~~l~~~~~~~vIiDE~h~~-kn~~s--~~~~~-~~~l~~-~~~~ 200 (573)
+ ..=.|-++|-..+-++. ..-.-.++++||+||+|.= -|..- ...+. +...+. -+.+
T Consensus 137 s-----------------~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiI 199 (845)
T COG1643 137 S-----------------PRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLI 199 (845)
T ss_pred C-----------------CCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEE
Confidence 0 11134555656555543 2333457999999999972 11110 11111 111122 3678
Q ss_pred EEeccCCCCCHHHHHHHH
Q psy13010 201 LLSGTPIQNSMAELWALL 218 (573)
Q Consensus 201 lLTgTP~~n~~~el~~ll 218 (573)
++|||--..+++.+++..
T Consensus 200 imSATld~~rfs~~f~~a 217 (845)
T COG1643 200 IMSATLDAERFSAYFGNA 217 (845)
T ss_pred EEecccCHHHHHHHcCCC
Confidence 999998777777766653
No 270
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.02 E-value=0.65 Score=48.93 Aligned_cols=39 Identities=23% Similarity=0.111 Sum_probs=28.6
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCccc
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAST 101 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l 101 (573)
+..+|.-++|+|||..+-++...+...+ .+++.+....+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~---~~v~yi~~~~f 180 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG---GKILYVRSELF 180 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEeeHHHH
Confidence 3468888999999999999998887642 35565654433
No 271
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.99 E-value=1.4 Score=45.06 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhCCC---CeEEeCCCCCCHHHHHHHHHHHHhhhc
Q psy13010 45 QLKGMNWLANLYDQGI---NGILADEMGLGKTVQSIAFLCHIAETY 87 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~---~~ll~de~G~GKT~~~ia~~~~~~~~~ 87 (573)
|..+...+.+.+..+. .-|+.-+.|+||+..|.++...+....
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 6666666767666554 238899999999999999999998653
No 272
>PRK09183 transposase/IS protein; Provisional
Probab=92.98 E-value=2.3 Score=41.36 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=27.0
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS 97 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~ 97 (573)
..+.+.+|.-++|+|||..+.++.......+ ..++.+.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G---~~v~~~~ 137 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAG---IKVRFTT 137 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEe
Confidence 3466678888999999999998877655442 2555554
No 273
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=92.96 E-value=0.94 Score=45.54 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=17.1
Q ss_pred EEeCCCCCCHHHHHHHHHHHH
Q psy13010 63 ILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~ 83 (573)
++.-+.|+|||..+-+++..+
T Consensus 47 ll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 47 LHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred EeeCcCCCCHHHHHHHHHHHh
Confidence 447999999999988887654
No 274
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=0.73 Score=46.80 Aligned_cols=86 Identities=15% Similarity=0.255 Sum_probs=67.6
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhhhccccc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHT 142 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~ 142 (573)
+|+-++|.||+..-+-++..+... +++|.|+-..-..||+-...+..-
T Consensus 97 LIgGdPGIGKSTLLLQva~~lA~~----~~vLYVsGEES~~QiklRA~RL~~---------------------------- 144 (456)
T COG1066 97 LIGGDPGIGKSTLLLQVAARLAKR----GKVLYVSGEESLQQIKLRADRLGL---------------------------- 144 (456)
T ss_pred EEccCCCCCHHHHHHHHHHHHHhc----CcEEEEeCCcCHHHHHHHHHHhCC----------------------------
Confidence 899999999998777777777665 489999999999999988877631
Q ss_pred CCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccC
Q psy13010 143 KDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKS 182 (573)
Q Consensus 143 ~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn 182 (573)
...++.+.....+..-...+.+.+++++|+|-.+.+-.
T Consensus 145 --~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s 182 (456)
T COG1066 145 --PTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYS 182 (456)
T ss_pred --CccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeec
Confidence 12346666666666667778888999999999988754
No 275
>KOG2879|consensus
Probab=92.87 E-value=0.038 Score=51.96 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=39.6
Q ss_pred hccccCCCCCCCCCCCCCcccC-CCCCCCCcccccc---cccCCchhhhhhhh
Q psy13010 372 EREEGTILPEFPHVPRDPVILP-QQPTYLPVCFFES---TQNMVSPALKKKIK 420 (573)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~-c~h~~~~~c~~~~---~~~~~~~~~~~~~~ 420 (573)
-...+..|++|+..+..|.+.. |+|+||=-|+..+ +.++.||.|+.+..
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3456789999999999999988 9999999998765 44578887766553
No 276
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=92.85 E-value=0.012 Score=41.04 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=34.7
Q ss_pred cCCCCCCCCCCCCCcccCCCCC-CCCccccccc-ccCCchhhhhhh
Q psy13010 376 GTILPEFPHVPRDPVILPQQPT-YLPVCFFEST-QNMVSPALKKKI 419 (573)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~c~h~-~~~~c~~~~~-~~~~~~~~~~~~ 419 (573)
+..|.+|.+...+..+.+|+|. +|..|..+.. ....+|.+|..+
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i 47 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPI 47 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhh
Confidence 5679999999999999999999 9999977653 566677776554
No 277
>PRK07952 DNA replication protein DnaC; Validated
Probab=92.82 E-value=0.93 Score=43.55 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHh---CC-CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHH
Q psy13010 43 HYQLKGMNWLANLYD---QG-INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMER 111 (573)
Q Consensus 43 ~~Q~~~v~~l~~~~~---~~-~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~ 111 (573)
+.|..++..+..... .+ .+.+|.-.+|+|||..+.+++..+...+ .+++++. +..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~it----~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLIIT----VADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEE----HHHHHHHHHH
Confidence 456666655543322 22 3458899999999999999999987753 3555553 3455554443
No 278
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=92.81 E-value=0.19 Score=38.64 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=33.5
Q ss_pred HHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCC
Q psy13010 530 LLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTH 566 (573)
Q Consensus 530 ~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~ 566 (573)
.+.+.|...++.+..++|+++.++|.++++.|+++..
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 38 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI 38 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 4678888889999999999999999999999998765
No 279
>KOG0920|consensus
Probab=92.78 E-value=1.3 Score=50.03 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=95.5
Q ss_pred cHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcc---c--HHHHHHHHHHHCCC
Q psy13010 41 LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS---T--LHNWQQEMERFVPD 115 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~---l--~~qW~~el~~~~~~ 115 (573)
-+.++...++ .+..+.-.+|.-|+|.|||.++--++.......+..-+ +|++-+. . +.+|...=+.+..+
T Consensus 174 a~~~r~~Il~----~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~-IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 174 AYKMRDTILD----AIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACN-IICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred cHHHHHHHHH----HHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCe-EEecCCchHHHHHHHHHHHHHhccccC
Confidence 4455555554 33446677999999999999999888877654443223 3333332 1 22343221222222
Q ss_pred ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh-hhccCccEEEEcccccccCcchHHHHHHHhc
Q psy13010 116 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY-FNRIKWQYLILDEAQAIKSSSSMRWKLLLGF 194 (573)
Q Consensus 116 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~-l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l 194 (573)
+.+-|.-.-..+ ....-.+..+|+..+-+.... -.--....||+||+|.=.-.+--..-.++.+
T Consensus 249 -~~VGYqvrl~~~--------------~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~l 313 (924)
T KOG0920|consen 249 -EEVGYQVRLESK--------------RSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDL 313 (924)
T ss_pred -CeeeEEEeeecc--------------cCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHH
Confidence 333332111000 012235778888877654322 1123567899999998432222233333333
Q ss_pred ----ccCcEEEEeccCCCCCHHHHHHHHHhhC-CC-CCCChHHHHHHHh
Q psy13010 195 ----SCRNRLLLSGTPIQNSMAELWALLHFIM-PS-MFDSHDEFNEWFS 237 (573)
Q Consensus 195 ----~~~~~~lLTgTP~~n~~~el~~ll~~L~-~~-~~~~~~~f~~~~~ 237 (573)
..-+.+|+|||--...+++.++....+. || .++-...|-+.+-
T Consensus 314 L~~~p~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil 362 (924)
T KOG0920|consen 314 LPRNPDLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDIL 362 (924)
T ss_pred hhhCCCceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHH
Confidence 2347899999988777777776544442 22 2344455555543
No 280
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.63 E-value=1.3 Score=48.02 Aligned_cols=42 Identities=21% Similarity=0.159 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCCCe---EEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGING---ILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~~---ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|..++..|.+.+..+... |+.-+.|+|||..|.+++..+...
T Consensus 21 qe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 21 QDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 444444455555544433 899999999999999998888754
No 281
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.61 E-value=3 Score=38.23 Aligned_cols=140 Identities=9% Similarity=0.022 Sum_probs=73.5
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceEEeecCChh----H-HHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKVVPYWGSPQ----E-RKIL 131 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v~~~~g~~~----~-~~~~ 131 (573)
..+..++....|.|||..|+++.......+ .+++||-= +.-...=...+.+..+++.+..+...-. . ....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G---~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHG---KKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCC---CeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHH
Confidence 455668899999999999999888777664 36666521 2111110111222223333333222100 0 0000
Q ss_pred HHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCc----chHHHHHHHhcccCcEEEEeccCC
Q psy13010 132 RQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSS----SSMRWKLLLGFSCRNRLLLSGTPI 207 (573)
Q Consensus 132 ~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~----~s~~~~~~~~l~~~~~~lLTgTP~ 207 (573)
.. --..+..-...+....|++||+||.-..-+. .......+..-...--++|||--.
T Consensus 98 ~~-------------------~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 98 AA-------------------AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HH-------------------HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 00 0001111224455678999999999765442 234444444434445799999866
Q ss_pred CCCHHHHHHHHH
Q psy13010 208 QNSMAELWALLH 219 (573)
Q Consensus 208 ~n~~~el~~ll~ 219 (573)
+..+.++..++.
T Consensus 159 p~~Lie~ADlVT 170 (191)
T PRK05986 159 PRELIEAADLVT 170 (191)
T ss_pred CHHHHHhCchhe
Confidence 655555554444
No 282
>KOG0317|consensus
Probab=92.60 E-value=0.026 Score=53.61 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=38.2
Q ss_pred ccccCCCCCCCCCCCCCcccCCCCCCCCcccccc-cccCCchhhhhhh
Q psy13010 373 REEGTILPEFPHVPRDPVILPQQPTYLPVCFFES-TQNMVSPALKKKI 419 (573)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~-~~~~~~~~~~~~~ 419 (573)
.+...-|..|.+...+|..|+|||+||=.|+.+- .....||.||..-
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~ 283 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKF 283 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccC
Confidence 3456789999999999999999999999998654 4556688887543
No 283
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.59 E-value=1.4 Score=46.97 Aligned_cols=42 Identities=21% Similarity=0.041 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhCCCCe---EEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 44 YQLKGMNWLANLYDQGING---ILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 44 ~Q~~~v~~l~~~~~~~~~~---ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
-|..++..+.+.+..+.-. ++.-+.|+|||..|..+...+..
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4566666676767654432 78999999999999888887764
No 284
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.58 E-value=1.2 Score=48.77 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCCCe---EEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 45 QLKGMNWLANLYDQGING---ILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~~---ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
|..++..|.+.+..+..+ ||.-+.|+|||..+.+++..+..
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 666666676666655443 88999999999999999988764
No 285
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.56 E-value=2 Score=46.65 Aligned_cols=42 Identities=24% Similarity=0.070 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCCCC---eEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGIN---GILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~---~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|..++..+.+.+..+.. -|+.-+.|+|||..|.++...+...
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 44455555555544432 3789999999999999999988654
No 286
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.55 E-value=2.3 Score=42.67 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=41.0
Q ss_pred hccHHHHHHHHHHHHHHHhCCC---CeEEeCCCCCCHHHHHHHHHHHHhhhc
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGI---NGILADEMGLGKTVQSIAFLCHIAETY 87 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~---~~ll~de~G~GKT~~~ia~~~~~~~~~ 87 (573)
..++|+|..+.+.+...+..+. .-++..+.|+||+..|.+++..+.-..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 4689999999998888776555 338899999999999999999888753
No 287
>PHA02533 17 large terminase protein; Provisional
Probab=92.54 E-value=1.1 Score=48.23 Aligned_cols=55 Identities=18% Similarity=0.102 Sum_probs=36.6
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
-.|.|+|+..+..|. .+...++.-.=..|||..+.+++....-..+ ...+++++|
T Consensus 58 f~L~p~Q~~i~~~~~----~~R~~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~ 112 (534)
T PHA02533 58 VQMRDYQKDMLKIMH----KNRFNACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAH 112 (534)
T ss_pred cCCcHHHHHHHHHHh----cCeEEEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeC
Confidence 368899999887652 2344467678889999988765544333222 236778888
No 288
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.52 E-value=0.81 Score=41.84 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=36.1
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHH
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERF 112 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~ 112 (573)
+|.-++|+|||..++.++......+ ++++++.......+..+.+..+
T Consensus 3 li~G~~G~GKT~l~~~~~~~~~~~g---~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLARG---EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCC---CcEEEEECCCCHHHHHHHHHHc
Confidence 6788999999999998888776543 4789998876666666665544
No 289
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.47 E-value=1.5 Score=47.78 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCC---CeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGI---NGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~---~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|...+..|.+.+..+. .-|+.-+.|+|||.+|..+...+...
T Consensus 21 Qe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 21 QETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred CHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 3344555555555443 23789999999999999999888753
No 290
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.45 E-value=2.3 Score=46.53 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCCCC--e-EEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGIN--G-ILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~--~-ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|...+..|.+.+..+.- + |+.-+.|+|||..|.+++..+...
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 44555555555554432 2 788999999999999998888654
No 291
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.45 E-value=1.2 Score=48.95 Aligned_cols=42 Identities=19% Similarity=0.094 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhCCCC---eEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGIN---GILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~---~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|...+..+.+.+..+.- -|+.-+.|+|||..|..+...+...
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 66677767676665432 3789999999999999999888764
No 292
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=92.42 E-value=0.92 Score=51.20 Aligned_cols=59 Identities=12% Similarity=0.019 Sum_probs=43.1
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHH
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLH 103 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~ 103 (573)
..|.+-|++++..+. ..+...+|.-..|+|||.++-+++..+...+ ..++.++|.+..-
T Consensus 351 ~~Ls~~Q~~Av~~i~---~s~~~~il~G~aGTGKTtll~~i~~~~~~~g---~~V~~~ApTg~Aa 409 (744)
T TIGR02768 351 YRLSEEQYEAVRHVT---GSGDIAVVVGRAGTGKSTMLKAAREAWEAAG---YRVIGAALSGKAA 409 (744)
T ss_pred CCCCHHHHHHHHHHh---cCCCEEEEEecCCCCHHHHHHHHHHHHHhCC---CeEEEEeCcHHHH
Confidence 368999999997653 2234568889999999998877776655432 3678888966543
No 293
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.21 E-value=1.4 Score=48.23 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhCCC---CeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 44 YQLKGMNWLANLYDQGI---NGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 44 ~Q~~~v~~l~~~~~~~~---~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
.|...+..+.+.+..+. .-||.-..|+|||..|..+...+...
T Consensus 28 Gq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 28 GQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 35566666666665444 34888999999999999999988754
No 294
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=92.15 E-value=0.5 Score=52.86 Aligned_cols=70 Identities=14% Similarity=0.030 Sum_probs=53.3
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcc-cHHHHHHHHH
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS-TLHNWQQEME 110 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~-l~~qW~~el~ 110 (573)
...++.|++.+..+...+..+..+++=.++|+|||+..++.........+ ++++|.++.. +.+|=.++..
T Consensus 14 ~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~--~~viist~t~~lq~q~~~~~~ 84 (654)
T COG1199 14 FEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG--KKVIISTRTKALQEQLLEEDL 84 (654)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC--CcEEEECCCHHHHHHHHHhhc
Confidence 36999999999999888888888999999999999988777666665433 5777777754 4444444443
No 295
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.02 E-value=3.5 Score=42.84 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=37.3
Q ss_pred CCCCccCCCCchhhhcc--HHHHHHHHHHHH-HHHh--CCCCeEEeCCCCCCHHHHHHHHHHHHhhhc
Q psy13010 25 FSTEVERPQPGLFRGNL--KHYQLKGMNWLA-NLYD--QGINGILADEMGLGKTVQSIAFLCHIAETY 87 (573)
Q Consensus 25 ~~~~~~~~~p~~l~~~L--~~~Q~~~v~~l~-~~~~--~~~~~ll~de~G~GKT~~~ia~~~~~~~~~ 87 (573)
+++.+..-.|......| ++-|...+.-.+ .... .+...+|.-.+|+|||..+-.++..+....
T Consensus 16 ~~~~~~~l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 16 IFKDEEVLEPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred eeCChhhCCCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 44444444444333333 455555543222 3232 234569999999999999999988876653
No 296
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.02 E-value=2.7 Score=37.38 Aligned_cols=135 Identities=12% Similarity=0.028 Sum_probs=70.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceEEeecCCh-----hHHHHHHHHh
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKVVPYWGSP-----QERKILRQFW 135 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v~~~~g~~-----~~~~~~~~~~ 135 (573)
..+.-..|.|||..|+++.......+ .++++|-= +.-...=...+.+.+|+..+..+..+. ........
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g---~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~-- 79 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHG---YRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAA-- 79 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHH--
Confidence 35667889999999998888777653 36666311 111000012233334555555433221 00000000
Q ss_pred hhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccC----cchHHHHHHHhcccCcEEEEeccCCCCCH
Q psy13010 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKS----SSSMRWKLLLGFSCRNRLLLSGTPIQNSM 211 (573)
Q Consensus 136 ~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn----~~s~~~~~~~~l~~~~~~lLTgTP~~n~~ 211 (573)
....+..-...+....+++||+||.-..-+ ........+..-...--++|||--.+..+
T Consensus 80 -----------------a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l 142 (159)
T cd00561 80 -----------------AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKEL 142 (159)
T ss_pred -----------------HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 001111222345556899999999977633 22344444444344557999998766655
Q ss_pred HHHHHHH
Q psy13010 212 AELWALL 218 (573)
Q Consensus 212 ~el~~ll 218 (573)
.++..++
T Consensus 143 ~e~AD~V 149 (159)
T cd00561 143 IEAADLV 149 (159)
T ss_pred HHhCcee
Confidence 5554443
No 297
>PRK06904 replicative DNA helicase; Validated
Probab=92.01 E-value=2.2 Score=45.45 Aligned_cols=120 Identities=15% Similarity=0.097 Sum_probs=67.2
Q ss_pred HhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEee-cC---ChhHHHHH
Q psy13010 56 YDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY-WG---SPQERKIL 131 (573)
Q Consensus 56 ~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~-~g---~~~~~~~~ 131 (573)
+..+.-.+|+.-+|+|||.-++.++.......+ .|++++...--..++...+.....+.....+ .| +..+-..+
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~~g--~~Vl~fSlEMs~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~ 295 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMASE--KPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKI 295 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcC--CeEEEEeccCCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHH
Confidence 344445599999999999999888776654322 4899999888888887776544333222111 22 12222222
Q ss_pred HHHhhhcccccCCCCceEEEe-----ehHhHHhhHhhhhc--cCccEEEEcccccccC
Q psy13010 132 RQFWDMKNLHTKDASFHVVIT-----SYQLVVSDFKYFNR--IKWQYLILDEAQAIKS 182 (573)
Q Consensus 132 ~~~~~~~~~~~~~~~~~i~i~-----sy~~~~~~~~~l~~--~~~~~vIiDE~h~~kn 182 (573)
....... . ....+.|. +.+.++.....+.. ...++||||=.|.+..
T Consensus 296 ~~a~~~l---~--~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 296 SSTVGMF---K--QKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHH---h--cCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 2111111 0 01123442 33444444444332 2578999999988863
No 298
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=91.97 E-value=0.16 Score=38.98 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=32.2
Q ss_pred HHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEE
Q psy13010 534 FMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVG 570 (573)
Q Consensus 534 ~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~ 570 (573)
.|+..|+.+..++|+++.++|+++++.|+.+.. .|+
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~-~vl 37 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI-RVL 37 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS-SEE
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc-eEE
Confidence 688899999999999999999999999998776 444
No 299
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.95 E-value=0.61 Score=39.67 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=23.6
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccH
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTL 102 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~ 102 (573)
+|.-++|+|||..+-.++..+. -+++.+....+.
T Consensus 2 ll~G~~G~GKT~l~~~la~~l~------~~~~~i~~~~~~ 35 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYLG------FPFIEIDGSELI 35 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHTT------SEEEEEETTHHH
T ss_pred EEECcCCCCeeHHHHHHHhhcc------cccccccccccc
Confidence 5667899999998877777652 255666555444
No 300
>KOG0739|consensus
Probab=91.88 E-value=1 Score=43.54 Aligned_cols=46 Identities=22% Similarity=0.360 Sum_probs=36.0
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHH
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERF 112 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~ 112 (573)
|.+|.-.+|+||+..|-|+..... .++.-|....|+..|..|=.+.
T Consensus 168 giLLyGPPGTGKSYLAKAVATEAn------STFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEAN------STFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhcC------CceEEeehHHHHHHHhccHHHH
Confidence 458899999999998877655432 3777788899999998877664
No 301
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=91.63 E-value=0.75 Score=49.03 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=23.3
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
.+.+.+|.-++|+|||..+-+++..+..
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 4567799999999999999888887754
No 302
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.54 E-value=0.059 Score=50.60 Aligned_cols=49 Identities=14% Similarity=0.122 Sum_probs=39.7
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCCcccccc--ccc-CCchhhhhhhhHh
Q psy13010 374 EEGTILPEFPHVPRDPVILPQQPTYLPVCFFES--TQN-MVSPALKKKIKIE 422 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~--~~~-~~~~~~~~~~~~~ 422 (573)
..+..|.+|.+.++.|..++|+|+||-.|++.. ..+ .-||.||....-.
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 678999999999999999999999999998873 223 3388887765443
No 303
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=91.54 E-value=0.41 Score=47.82 Aligned_cols=65 Identities=11% Similarity=0.044 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhc-CCCCCEEEEcCccc-HHHHHHHHHH
Q psy13010 41 LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY-DVWGPFLIISPAST-LHNWQQEMER 111 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~-~~~~~~LIV~P~~l-~~qW~~el~~ 111 (573)
|.+-|..+|.+ ..+..+|....|+|||.+++.-+..+.... -.+..+|+|++... ...-+..+..
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 56778888863 245556667899999999988887776654 34467999998544 4445555544
No 304
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=91.49 E-value=0.054 Score=41.24 Aligned_cols=47 Identities=23% Similarity=0.301 Sum_probs=31.9
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCCccccccccc--CCchhhhhhhhH
Q psy13010 375 EGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQN--MVSPALKKKIKI 421 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~--~~~~~~~~~~~~ 421 (573)
+...|+++...-.+|+++++||.|+..|+.+.... ..+|.++.....
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 45679999999999999999999999998766553 444444433333
No 305
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=91.42 E-value=0.9 Score=48.56 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=69.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHH----HHHHHHHHCCCceEEeecCChhHHHHHHHHhhhccc
Q psy13010 66 DEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHN----WQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNL 140 (573)
Q Consensus 66 de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~q----W~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 140 (573)
-+-=-|||+..+++|..++..... =.+.+|+- +++.+. -...+++|+|.-.+..-.|..-. ..
T Consensus 209 VPRRHGKTWf~VpiIsllL~s~~g-I~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~----------~s- 276 (668)
T PHA03372 209 VPRRHGKTWFIIPIISFLLKNIIG-ISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVIS----------ID- 276 (668)
T ss_pred ecccCCceehHHHHHHHHHHhhcC-ceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEE----------Ee-
Confidence 377789999999999988874433 26777777 555444 33455789986554322111000 00
Q ss_pred ccCCCCc-eEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCCCC
Q psy13010 141 HTKDASF-HVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQN 209 (573)
Q Consensus 141 ~~~~~~~-~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~n 209 (573)
.+.... .+..+. .+...++...|+++++||+|-++...-...--+...+..+.+.+|.|--.+
T Consensus 277 -~pg~Kst~~fasc-----~n~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~~KiIfISS~Nsg~ 340 (668)
T PHA03372 277 -HRGAKSTALFASC-----YNTNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNTTKIIFISSTNTTN 340 (668)
T ss_pred -cCCCcceeeehhh-----ccCccccCCCCCEEEEehhhccCHHHHHHhhhhhcccCceEEEEeCCCCCC
Confidence 000000 011111 223466777899999999999975422221112222455667777664333
No 306
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=91.40 E-value=5.1 Score=37.82 Aligned_cols=35 Identities=23% Similarity=0.106 Sum_probs=25.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS 97 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~ 97 (573)
.+|.-+.|+|||...-|++.......+. ..++.+.
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~-~~v~y~~ 71 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPG-KRVVYLS 71 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTT-S-EEEEE
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhcccc-ccceeec
Confidence 5889999999999988888887765432 3444443
No 307
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.33 E-value=1.4 Score=50.45 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhC--CCCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 45 QLKGMNWLANLYDQ--GINGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 45 Q~~~v~~l~~~~~~--~~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
|.+-+..++..+.. ..+.+|.-++|.|||..+=++...+..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 55567666665432 345688889999999998777776644
No 308
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=91.30 E-value=3.3 Score=36.38 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=25.6
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~ 99 (573)
+|.-++|+|||..+..++...... .++++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATK---GGKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhc---CCEEEEEECC
Confidence 566789999999998888887663 2466766653
No 309
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.28 E-value=2.7 Score=38.58 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
-|+.-+.|+|||..+.+++..+...
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4889999999999999999888764
No 310
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=91.22 E-value=5.1 Score=43.89 Aligned_cols=60 Identities=10% Similarity=0.100 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHH
Q psy13010 46 LKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQE 108 (573)
Q Consensus 46 ~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~e 108 (573)
++-|+.+.+.+.+.-. ++.-+-|.|||..+..++..+....+ ..++|.+| .+...+-.++
T Consensus 175 ~~~id~~~~~fkq~~t-V~taPRqrGKS~iVgi~l~~La~f~G--i~IlvTAH~~~ts~evF~r 235 (752)
T PHA03333 175 LREIDRIFDEYGKCYT-AATVPRRCGKTTIMAIILAAMISFLE--IDIVVQAQRKTMCLTLYNR 235 (752)
T ss_pred HHHHHHHHHHHhhcce-EEEeccCCCcHHHHHHHHHHHHHhcC--CeEEEECCChhhHHHHHHH
Confidence 3444555565655444 55568999999988756555554222 47899999 4444443333
No 311
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=91.19 E-value=2.4 Score=40.19 Aligned_cols=28 Identities=18% Similarity=0.043 Sum_probs=22.6
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
+...+|.-+.|+|||..+.++.......
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~ 69 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYG 69 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4456899999999999998888776554
No 312
>KOG0737|consensus
Probab=91.13 E-value=0.65 Score=46.39 Aligned_cols=52 Identities=21% Similarity=0.278 Sum_probs=36.1
Q ss_pred HHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHH
Q psy13010 55 LYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERF 112 (573)
Q Consensus 55 ~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~ 112 (573)
++....|.+|..++|+|||+.|-|+...... ++.=|.=..+...|..|-.+.
T Consensus 123 Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga------~fInv~~s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 123 LLRPPKGILLYGPPGTGKTMLAKAIAKEAGA------NFINVSVSNLTSKWFGEAQKL 174 (386)
T ss_pred cccCCccceecCCCCchHHHHHHHHHHHcCC------CcceeeccccchhhHHHHHHH
Confidence 3445667899999999999999776665432 334444466677887766554
No 313
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.11 E-value=3.1 Score=41.68 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCC--CeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 45 QLKGMNWLANLYDQGI--NGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~--~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
|.+++..+......+. ..+|.-+.|+|||..+-+++..+..
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4445555555554432 3699999999999999888877654
No 314
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=91.09 E-value=4.6 Score=45.60 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=33.4
Q ss_pred CCchhhhccHHHHHHHHH-HHHHHHhCC--CCe-EEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 33 QPGLFRGNLKHYQLKGMN-WLANLYDQG--ING-ILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 33 ~p~~l~~~L~~~Q~~~v~-~l~~~~~~~--~~~-ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
+|..|. =|+-|...+. +|...+... .++ +|.-.+|+|||.++-.++..+..
T Consensus 753 VPD~LP--hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 753 VPKYLP--CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred CCCcCC--ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444333 5666776664 444444422 234 48999999999999888887754
No 315
>PRK12377 putative replication protein; Provisional
Probab=91.05 E-value=2.1 Score=41.23 Aligned_cols=62 Identities=8% Similarity=0.090 Sum_probs=41.7
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHH---------HHHHHCCCceEEeecCC
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQ---------EMERFVPDFKVVPYWGS 124 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~---------el~~~~~~~~v~~~~g~ 124 (573)
.+.+|.-++|+|||..+.|++..+...+ .+++++.-..++...+. ++.+......++++.+-
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g---~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDl 172 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKG---RSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEI 172 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCC
Confidence 4557888999999999999999988653 24555544556654432 34444456777777643
No 316
>PF13173 AAA_14: AAA domain
Probab=90.95 E-value=2.1 Score=36.46 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=25.8
Q ss_pred CccEEEEcccccccCcchHHHHHHHhc---ccCcEEEEeccCCC
Q psy13010 168 KWQYLILDEAQAIKSSSSMRWKLLLGF---SCRNRLLLSGTPIQ 208 (573)
Q Consensus 168 ~~~~vIiDE~h~~kn~~s~~~~~~~~l---~~~~~~lLTgTP~~ 208 (573)
+..+|++||+|++.+- ...++.+ .....+++||+-..
T Consensus 61 ~~~~i~iDEiq~~~~~----~~~lk~l~d~~~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDW----EDALKFLVDNGPNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhccH----HHHHHHHHHhccCceEEEEccchH
Confidence 5678999999999763 3334443 23568999998544
No 317
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.75 E-value=0.32 Score=51.33 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=63.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHC----CCceEEeecCChhHHHHHHHHhhhccc
Q psy13010 66 DEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFV----PDFKVVPYWGSPQERKILRQFWDMKNL 140 (573)
Q Consensus 66 de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~----~~~~v~~~~g~~~~~~~~~~~~~~~~~ 140 (573)
..+|+|||+++.++|..++.++- +.+|..|- .++++.-..-+.... ---.++.+.|.....+.+.. .
T Consensus 4 matgsgkt~~ma~lil~~y~kgy--r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~------f 75 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKKGY--RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNN------F 75 (812)
T ss_pred cccCCChhhHHHHHHHHHHHhch--hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecc------c
Confidence 35899999999999999998753 45666655 667665443332111 01223333343333322222 2
Q ss_pred ccCCCCceEEEeehHhHHhhHhh-------hhcc--CccEEEEccccccc
Q psy13010 141 HTKDASFHVVITSYQLVVSDFKY-------FNRI--KWQYLILDEAQAIK 181 (573)
Q Consensus 141 ~~~~~~~~i~i~sy~~~~~~~~~-------l~~~--~~~~vIiDE~h~~k 181 (573)
........|+.||-..+.++... +... .--+.+-||+|++.
T Consensus 76 sehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 76 SEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred CccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 23446678999998888766421 1111 23367789999983
No 318
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=90.70 E-value=2.6 Score=39.00 Aligned_cols=129 Identities=14% Similarity=0.158 Sum_probs=66.3
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCC--CceEEeecCChhHHHHHHHHhhhccc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVP--DFKVVPYWGSPQERKILRQFWDMKNL 140 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~ 140 (573)
++.-.+|.|||.++.-+...+... + +++.+|+-..-.--=.++++.+.. +..+.......+....
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~-~--~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~---------- 71 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK-G--KKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEI---------- 71 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT-T----EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHH----------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc-c--ccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHH----------
Confidence 455689999999998888877765 2 466667654332222333333321 2333322211111111
Q ss_pred ccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhc-----ccCcEEEEeccCCCCCHHHHH
Q psy13010 141 HTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF-----SCRNRLLLSGTPIQNSMAELW 215 (573)
Q Consensus 141 ~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l-----~~~~~~lLTgTP~~n~~~el~ 215 (573)
+..-...+..-++++|++|-+.+--+.. .....++.+ .....+.+++|--+.....+.
T Consensus 72 ----------------~~~~l~~~~~~~~D~vlIDT~Gr~~~d~-~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~ 134 (196)
T PF00448_consen 72 ----------------AREALEKFRKKGYDLVLIDTAGRSPRDE-ELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL 134 (196)
T ss_dssp ----------------HHHHHHHHHHTTSSEEEEEE-SSSSTHH-HHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH
T ss_pred ----------------HHHHHHHHhhcCCCEEEEecCCcchhhH-HHHHHHHHHhhhcCCccceEEEecccChHHHHHHH
Confidence 1112233444578999999997654322 222223332 234568888887666555554
Q ss_pred HHHHhh
Q psy13010 216 ALLHFI 221 (573)
Q Consensus 216 ~ll~~L 221 (573)
.....+
T Consensus 135 ~~~~~~ 140 (196)
T PF00448_consen 135 AFYEAF 140 (196)
T ss_dssp HHHHHS
T ss_pred HHhhcc
Confidence 444443
No 319
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.66 E-value=1.5 Score=50.47 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhC--CCCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 45 QLKGMNWLANLYDQ--GINGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 45 Q~~~v~~l~~~~~~--~~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
|..-+..++..+.. .++.+|.-++|.|||..+-+++..+..
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 44456666665532 345578889999999999888777654
No 320
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=90.66 E-value=0.068 Score=36.10 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=24.9
Q ss_pred CCCCCCCC---CCCcccCCCCCCCCccccccc-ccCCchh
Q psy13010 379 LPEFPHVP---RDPVILPQQPTYLPVCFFEST-QNMVSPA 414 (573)
Q Consensus 379 ~~~~~~~~---~~~~~~~c~h~~~~~c~~~~~-~~~~~~~ 414 (573)
|++|.... ..+.+++|+|.||..|+.... ....+|.
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~ 41 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPI 41 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcC
Confidence 55555433 468899999999999987665 3334443
No 321
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.66 E-value=3.9 Score=42.37 Aligned_cols=87 Identities=16% Similarity=0.115 Sum_probs=48.9
Q ss_pred hhccCccEEEEcccccccCcchHHHHHHHhc--------ccCcEEEEeccCCCCCHHHHHHHHHhhCCCC----------
Q psy13010 164 FNRIKWQYLILDEAQAIKSSSSMRWKLLLGF--------SCRNRLLLSGTPIQNSMAELWALLHFIMPSM---------- 225 (573)
Q Consensus 164 l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l--------~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~---------- 225 (573)
+...++++|++|-+-+.-+. ......+..+ .....+.|+||--+....+.+..+..+....
T Consensus 295 l~~~~~D~VLIDTaGr~~rd-~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~ 373 (432)
T PRK12724 295 LARDGSELILIDTAGYSHRN-LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEAD 373 (432)
T ss_pred HHhCCCCEEEEeCCCCCccC-HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCC
Confidence 33457899999987665221 2233333332 1235688899988877777777666554331
Q ss_pred -CCChHHHHHHHhhhhhhhhccccccc
Q psy13010 226 -FDSHDEFNEWFSKDIESHAENKTSID 251 (573)
Q Consensus 226 -~~~~~~f~~~~~~~~~~~~~~~~~~~ 251 (573)
++..-......+.|+..-......++
T Consensus 374 ~~G~il~i~~~~~lPI~ylt~GQ~VPe 400 (432)
T PRK12724 374 FLGSFLELADTYSKSFTYLSVGQEVPF 400 (432)
T ss_pred CccHHHHHHHHHCCCEEEEecCCCCCC
Confidence 23334444455556655444444433
No 322
>PRK08760 replicative DNA helicase; Provisional
Probab=90.53 E-value=2.2 Score=45.46 Aligned_cols=53 Identities=15% Similarity=-0.014 Sum_probs=40.8
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHC
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFV 113 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~ 113 (573)
+.-.+|+-.+|+|||..++.++.......+ .+++++....-..+|...+....
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g--~~V~~fSlEMs~~ql~~Rl~a~~ 281 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSK--KGVAVFSMEMSASQLAMRLISSN 281 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcC--CceEEEeccCCHHHHHHHHHHhh
Confidence 334599999999999999988877654322 48899988888888888775543
No 323
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.48 E-value=2.1 Score=48.45 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=27.5
Q ss_pred HHHHHHHHHHh--CCCCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 47 KGMNWLANLYD--QGINGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 47 ~~v~~l~~~~~--~~~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
+-+..++..+. ...+.+|.-++|+|||..+-+++..+...
T Consensus 189 ~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 189 DELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred HHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 33334555443 23456888899999999998888877553
No 324
>PRK13342 recombination factor protein RarA; Reviewed
Probab=90.39 E-value=2.3 Score=44.50 Aligned_cols=23 Identities=26% Similarity=0.137 Sum_probs=18.3
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
..+|.-++|+|||..|-++....
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 45889999999999887776543
No 325
>KOG1813|consensus
Probab=90.37 E-value=0.1 Score=49.79 Aligned_cols=39 Identities=13% Similarity=-0.013 Sum_probs=33.5
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCccccccccc-CCchhh
Q psy13010 377 TILPEFPHVPRDPVILPQQPTYLPVCFFESTQN-MVSPAL 415 (573)
Q Consensus 377 ~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~-~~~~~~ 415 (573)
..|.+|.....+|+++.|+|.||..|....... ..|..|
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC 281 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVC 281 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceec
Confidence 559999999999999999999999998888776 555554
No 326
>PRK04195 replication factor C large subunit; Provisional
Probab=90.34 E-value=3.5 Score=44.18 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=20.7
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
....+|.-++|+|||..|-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3456999999999999988877765
No 327
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=90.33 E-value=1.4 Score=45.06 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=22.7
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
+|.+++|..+.|.|||..+-.+...+...
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 46667778899999998887777766654
No 328
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=90.33 E-value=0.039 Score=36.57 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=25.6
Q ss_pred CCCCCCCCCCCc-ccCCCCCCCCcccccccc
Q psy13010 379 LPEFPHVPRDPV-ILPQQPTYLPVCFFESTQ 408 (573)
Q Consensus 379 ~~~~~~~~~~~~-~~~c~h~~~~~c~~~~~~ 408 (573)
|++|.+...++. +++|+|.||..|+.+...
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~ 31 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLE 31 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHH
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHH
Confidence 578888888888 999999999999765544
No 329
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.25 E-value=4.7 Score=41.28 Aligned_cols=125 Identities=11% Similarity=0.104 Sum_probs=64.3
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCC--CceEEeecCChhHHHHHHHHhhhc
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVP--DFKVVPYWGSPQERKILRQFWDMK 138 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~ 138 (573)
-.+|.-.+|.|||.++..+........+. .++.+|+......-=.+.+..|.. +..+......
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~-------------- 203 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDG-------------- 203 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecccccccHHHHHHHHHHHcCCceEecCCc--------------
Confidence 34788899999999998888776443221 355666554321111122222210 1222222111
Q ss_pred ccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcc-----cCcEEEEeccCCCCCHHH
Q psy13010 139 NLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFS-----CRNRLLLSGTPIQNSMAE 213 (573)
Q Consensus 139 ~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~-----~~~~~lLTgTP~~n~~~e 213 (573)
..+......+. +.++|+||++-+.-.. ......+..+. ....++|++|--.....+
T Consensus 204 ----------------~~l~~~l~~l~--~~DlVLIDTaG~~~~d-~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~e 264 (374)
T PRK14722 204 ----------------GDLQLALAELR--NKHMVLIDTIGMSQRD-RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNE 264 (374)
T ss_pred ----------------ccHHHHHHHhc--CCCEEEEcCCCCCccc-HHHHHHHHHHhccCCCCeEEEEecCccChHHHHH
Confidence 11112222222 5699999999654221 12233333331 234688899987777666
Q ss_pred HHHHHH
Q psy13010 214 LWALLH 219 (573)
Q Consensus 214 l~~ll~ 219 (573)
.+..+.
T Consensus 265 vi~~f~ 270 (374)
T PRK14722 265 VVQAYR 270 (374)
T ss_pred HHHHHH
Confidence 654433
No 330
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.24 E-value=5.4 Score=39.70 Aligned_cols=127 Identities=20% Similarity=0.147 Sum_probs=72.1
Q ss_pred HHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEeecCChhHHH
Q psy13010 50 NWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERK 129 (573)
Q Consensus 50 ~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~ 129 (573)
.+|..+...+.+.+++-.+|+|||..+-+++..+....+ ..++++|=. ..|+. .++...+.+...
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~-~~ri~tiEd-------~~El~--~~~~~~v~~~~~----- 187 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDP-TDRVVIIED-------TRELQ--CAAPNVVQLRTS----- 187 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCC-CceEEEECC-------chhhc--CCCCCEEEEEec-----
Confidence 456666666778899999999999999888877765322 134443321 11221 111122111100
Q ss_pred HHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCCCC
Q psy13010 130 ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQN 209 (573)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~n 209 (573)
.. . ..+..........+++++|+.|.- .. ....+++.....+.-.+ +|-+.+
T Consensus 188 ---------------~~--~-----~~~~~~l~~aLR~~pD~iivGEiR---~~--ea~~~l~a~~tGh~G~~-tTiHa~ 239 (299)
T TIGR02782 188 ---------------DD--A-----ISMTRLLKATLRLRPDRIIVGEVR---GG--EALDLLKAWNTGHPGGI-ATIHAN 239 (299)
T ss_pred ---------------CC--C-----CCHHHHHHHHhcCCCCEEEEeccC---CH--HHHHHHHHHHcCCCCeE-EeeccC
Confidence 00 0 023333444556789999999984 22 24455666655554222 577888
Q ss_pred CHHHHHHHHH
Q psy13010 210 SMAELWALLH 219 (573)
Q Consensus 210 ~~~el~~ll~ 219 (573)
++.+...-+.
T Consensus 240 ~~~~ai~Rl~ 249 (299)
T TIGR02782 240 NAKAALDRLE 249 (299)
T ss_pred CHHHHHHHHH
Confidence 8888666554
No 331
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=90.23 E-value=1.6 Score=42.16 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=20.0
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
..|.+++|.-+.|.|||..+-.++..+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 34666777889999999766555554433
No 332
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=90.07 E-value=0.082 Score=49.90 Aligned_cols=45 Identities=9% Similarity=-0.022 Sum_probs=37.0
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCcccccc-cccCCchhhhhhhhH
Q psy13010 377 TILPEFPHVPRDPVILPQQPTYLPVCFFES-TQNMVSPALKKKIKI 421 (573)
Q Consensus 377 ~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~-~~~~~~~~~~~~~~~ 421 (573)
-.|.||......|.+++|+|.||.-|+-.+ ..-..||.|+-+..+
T Consensus 26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred HHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 458999999999999999999999999876 345677777766544
No 333
>CHL00095 clpC Clp protease ATP binding subunit
Probab=90.02 E-value=2 Score=49.30 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=21.7
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
..+.+|.-++|.|||..+-+++..+..
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 345688889999999999888777654
No 334
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.00 E-value=3.7 Score=43.47 Aligned_cols=42 Identities=19% Similarity=0.065 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCCC---eEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGIN---GILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~---~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|..++.++.+.+..+.- -|+.-+.|+|||..|.+++..+...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 55667777776665432 3788899999999999999888754
No 335
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=89.96 E-value=4.4 Score=38.58 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=32.1
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEM 109 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el 109 (573)
+...++.-++|+|||..+..++......+ .+++.|+...-..+-.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~e~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSTQLTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHH
Confidence 44458899999999999888887765542 3667777654333333333
No 336
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=89.96 E-value=3.2 Score=42.05 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHHHhC-CCCeEEeCCCCCCHHHHHHHHHHHHhhhc
Q psy13010 41 LKHYQLKGMNWLANLYDQ-GINGILADEMGLGKTVQSIAFLCHIAETY 87 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~~-~~~~ll~de~G~GKT~~~ia~~~~~~~~~ 87 (573)
++|+|...-+-+.....+ +-.-++.-+.|+|||..|.++...+.-..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 467777777666553211 11237889999999999999999887753
No 337
>KOG0733|consensus
Probab=89.93 E-value=2.7 Score=44.96 Aligned_cols=47 Identities=23% Similarity=0.298 Sum_probs=35.5
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMER 111 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~ 111 (573)
+.|.||+-.+|.|||+.|-|+.+..... ++=|--+.|+..|..|=.+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N------FisVKGPELlNkYVGESEr 591 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN------FISVKGPELLNKYVGESER 591 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc------eEeecCHHHHHHHhhhHHH
Confidence 4577999999999999998887765442 4556667788888766544
No 338
>PRK08840 replicative DNA helicase; Provisional
Probab=89.90 E-value=3.8 Score=43.52 Aligned_cols=54 Identities=22% Similarity=0.140 Sum_probs=39.3
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHH
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERF 112 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~ 112 (573)
..+.-.+|+.-+|+|||.-++.++.......+ .|+++....--..++...+...
T Consensus 215 ~~g~LiviaarPg~GKTafalnia~~~a~~~~--~~v~~fSlEMs~~ql~~Rlla~ 268 (464)
T PRK08840 215 QGSDLIIVAARPSMGKTTFAMNLCENAAMDQD--KPVLIFSLEMPAEQLMMRMLAS 268 (464)
T ss_pred CCCceEEEEeCCCCchHHHHHHHHHHHHHhCC--CeEEEEeccCCHHHHHHHHHHh
Confidence 33344599999999999999888777654322 4889998877777877666443
No 339
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=89.86 E-value=3.8 Score=36.95 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=36.2
Q ss_pred hhhhccCccEEEEcccccccCcc----hHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHH
Q psy13010 162 KYFNRIKWQYLILDEAQAIKSSS----SMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLH 219 (573)
Q Consensus 162 ~~l~~~~~~~vIiDE~h~~kn~~----s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~ 219 (573)
..+....|++||+||.-..-+.. ......+..-...--++|||.-.+..+.++..++.
T Consensus 91 ~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VT 152 (173)
T TIGR00708 91 EMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVT 152 (173)
T ss_pred HHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceee
Confidence 44556789999999997653322 34444444434455799999866655555444443
No 340
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=89.63 E-value=2.3 Score=46.27 Aligned_cols=131 Identities=13% Similarity=0.132 Sum_probs=70.9
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHH----HHCCCceEEeecCChhHHHHHHHHh
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEME----RFVPDFKVVPYWGSPQERKILRQFW 135 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~----~~~~~~~v~~~~g~~~~~~~~~~~~ 135 (573)
-.++.-.-=-|||+.+.+.+..+..... ...+++++| .+..+.-.+++. +|++...+-...|.. +
T Consensus 256 ~tVflVPRR~GKTwivv~iI~~ll~s~~-Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~-----I---- 325 (738)
T PHA03368 256 ATVFLVPRRHGKTWFLVPLIALALATFR-GIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGET-----I---- 325 (738)
T ss_pred ceEEEecccCCchhhHHHHHHHHHHhCC-CCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcE-----E----
Confidence 3455667778999988877776664422 147899999 566666656654 465543332222210 0
Q ss_pred hhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhc---ccCcEEEEeccCCCCC
Q psy13010 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF---SCRNRLLLSGTPIQNS 210 (573)
Q Consensus 136 ~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l---~~~~~~lLTgTP~~n~ 210 (573)
.....++ +...+... .. .....++...++++|+|||+.++.. ...++.-+ .....|.+|.|--.+.
T Consensus 326 -~i~f~nG-~kstI~Fa---Sa-rntNsiRGqtfDLLIVDEAqFIk~~---al~~ilp~l~~~n~k~I~ISS~Ns~~~ 394 (738)
T PHA03368 326 -SFSFPDG-SRSTIVFA---SS-HNTNGIRGQDFNLLFVDEANFIRPD---AVQTIMGFLNQTNCKIIFVSSTNTGKA 394 (738)
T ss_pred -EEEecCC-CccEEEEE---ec-cCCCCccCCcccEEEEechhhCCHH---HHHHHHHHHhccCccEEEEecCCCCcc
Confidence 0000000 00111111 11 2234566678999999999999763 22222222 4556777877754433
No 341
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=89.54 E-value=3 Score=48.22 Aligned_cols=127 Identities=14% Similarity=0.047 Sum_probs=70.6
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVV 119 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~ 119 (573)
.|.+-|++++..+. ......+|.-..|+|||.+.-++...+... + ..++.++|.+..-. .|.+-.
T Consensus 346 ~Ls~eQr~Av~~il---~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~-G--~~V~~~ApTGkAA~---~L~e~t------ 410 (988)
T PRK13889 346 VLSGEQADALAHVT---DGRDLGVVVGYAGTGKSAMLGVAREAWEAA-G--YEVRGAALSGIAAE---NLEGGS------ 410 (988)
T ss_pred CCCHHHHHHHHHHh---cCCCeEEEEeCCCCCHHHHHHHHHHHHHHc-C--CeEEEecCcHHHHH---HHhhcc------
Confidence 59999999997653 223356888899999998754444444332 2 36788888654432 222111
Q ss_pred eecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhc-ccCc
Q psy13010 120 PYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF-SCRN 198 (573)
Q Consensus 120 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l-~~~~ 198 (573)
|. ....+..+.... .. ..-.....++|||||+..+.... ..+.+... ....
T Consensus 411 ---Gi--~a~TI~sll~~~-------------------~~--~~~~l~~~~vlIVDEASMv~~~~--m~~LL~~a~~~ga 462 (988)
T PRK13889 411 ---GI--ASRTIASLEHGW-------------------GQ--GRDLLTSRDVLVIDEAGMVGTRQ--LERVLSHAADAGA 462 (988)
T ss_pred ---Cc--chhhHHHHHhhh-------------------cc--cccccccCcEEEEECcccCCHHH--HHHHHHhhhhCCC
Confidence 00 011111110000 00 00011246799999999885442 33344333 4667
Q ss_pred EEEEeccCCCC
Q psy13010 199 RLLLSGTPIQN 209 (573)
Q Consensus 199 ~~lLTgTP~~n 209 (573)
+++|.|=|-+-
T Consensus 463 rvVLVGD~~QL 473 (988)
T PRK13889 463 KVVLVGDPQQL 473 (988)
T ss_pred EEEEECCHHHc
Confidence 89999987653
No 342
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=89.30 E-value=1.8 Score=44.62 Aligned_cols=29 Identities=21% Similarity=0.060 Sum_probs=23.8
Q ss_pred HHHhCCCCeEEeCCCCCCHHHHHHHHHHH
Q psy13010 54 NLYDQGINGILADEMGLGKTVQSIAFLCH 82 (573)
Q Consensus 54 ~~~~~~~~~ll~de~G~GKT~~~ia~~~~ 82 (573)
.....+.+.++.-..|+|||..+.++...
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 44566888899999999999998887666
No 343
>PRK11823 DNA repair protein RadA; Provisional
Probab=89.28 E-value=1.8 Score=45.77 Aligned_cols=87 Identities=14% Similarity=0.186 Sum_probs=54.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhhhcccc
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLH 141 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~ 141 (573)
.+|.-++|+|||..++.++......+ +++|+|.-..-..|......+..-+..
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g---~~vlYvs~Ees~~qi~~ra~rlg~~~~------------------------ 135 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAG---GKVLYVSGEESASQIKLRAERLGLPSD------------------------ 135 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEccccHHHHHHHHHHcCCChh------------------------
Confidence 38899999999999988888776432 478888876556666554444321100
Q ss_pred cCCCCceEEEeehHhHHhhHhhhhccCccEEEEccccccc
Q psy13010 142 TKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIK 181 (573)
Q Consensus 142 ~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~k 181 (573)
.+.+..-..+......+...++++||+|+.+.+.
T Consensus 136 ------~l~~~~e~~l~~i~~~i~~~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 136 ------NLYLLAETNLEAILATIEEEKPDLVVIDSIQTMY 169 (446)
T ss_pred ------cEEEeCCCCHHHHHHHHHhhCCCEEEEechhhhc
Confidence 0122222223333344555689999999998764
No 344
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=89.19 E-value=0.85 Score=47.28 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=28.7
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNW 105 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW 105 (573)
.+.+.+|.-++|+|||..+-+++..+. .+++-+.+..+...|
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~------~~fi~i~~s~l~~k~ 219 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTT------ATFIRVVGSEFVQKY 219 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcC------CCEEEEehHHHHHHh
Confidence 355779999999999999877766532 255556555444444
No 345
>KOG0925|consensus
Probab=89.10 E-value=0.97 Score=46.59 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=34.2
Q ss_pred cCccEEEEcccccccCcchHHHHHHHhc-------ccC-cEEEEeccCCCCCHHHHHHHHHhh
Q psy13010 167 IKWQYLILDEAQAIKSSSSMRWKLLLGF-------SCR-NRLLLSGTPIQNSMAELWALLHFI 221 (573)
Q Consensus 167 ~~~~~vIiDE~h~~kn~~s~~~~~~~~l-------~~~-~~~lLTgTP~~n~~~el~~ll~~L 221 (573)
..|+++|+||+|.= |..+..+..+ +.. +.+.+|+|-...++..+|+-.-++
T Consensus 158 ~~y~viiLDeahER----tlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll 216 (699)
T KOG0925|consen 158 GRYGVIILDEAHER----TLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLL 216 (699)
T ss_pred ccccEEEechhhhh----hHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCee
Confidence 47999999999973 2222222222 233 578899998888877777766655
No 346
>CHL00206 ycf2 Ycf2; Provisional
Probab=89.07 E-value=1.4 Score=53.32 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=30.5
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNW 105 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW 105 (573)
+.|.+|.-++|+|||+.|=|++.... =|++-|....++..|
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~------VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSY------VPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcC------CceEEEEHHHHhhcc
Confidence 44779999999999999877766543 276767667777666
No 347
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.04 E-value=0.93 Score=45.18 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=31.4
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHH
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQ 106 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~ 106 (573)
..+.|.||.-.+|+|||+.|=|+.+.... .++=|+-+.++..+.
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~A------tFIrvvgSElVqKYi 226 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTDA------TFIRVVGSELVQKYI 226 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCc------eEEEeccHHHHHHHh
Confidence 45678899999999999999877765432 456566565555543
No 348
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.03 E-value=0.14 Score=49.93 Aligned_cols=49 Identities=12% Similarity=0.092 Sum_probs=32.0
Q ss_pred ccCCCCCCCCC-CCCCc---c-cCCCCCCCCccccccccc--CCchhhhhhhhHhh
Q psy13010 375 EGTILPEFPHV-PRDPV---I-LPQQPTYLPVCFFESTQN--MVSPALKKKIKIED 423 (573)
Q Consensus 375 ~~~~~~~~~~~-~~~~~---~-~~c~h~~~~~c~~~~~~~--~~~~~~~~~~~~~~ 423 (573)
++..||+|... .-+|. + .+|+|.||..|+...... ..||.|+.....+.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 35789999962 33333 3 369999999998775443 46776665544433
No 349
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=89.01 E-value=3.4 Score=42.19 Aligned_cols=43 Identities=21% Similarity=0.103 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhCCCC---eEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 44 YQLKGMNWLANLYDQGIN---GILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 44 ~Q~~~v~~l~~~~~~~~~---~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
.|...+..+......+.. -|+.-+.|+|||..+.++...+...
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 18 GQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 344555555555554432 3889999999999998888887654
No 350
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=88.92 E-value=0.92 Score=47.06 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=27.9
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNW 105 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW 105 (573)
..+.+|.-++|+|||..|-++...+. .+++.+....+...|
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~------~~~i~v~~~~l~~~~ 205 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVGSELVQKF 205 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhC------CCEEEeehHHHhHhh
Confidence 45679999999999999988776542 245555444444333
No 351
>PRK10865 protein disaggregation chaperone; Provisional
Probab=88.88 E-value=2.3 Score=48.87 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHh--CCCCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 45 QLKGMNWLANLYD--QGINGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 45 Q~~~v~~l~~~~~--~~~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
|..-+..++..+. ..++.+|.-++|.|||..+-++...+..
T Consensus 183 r~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 183 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 4444666666443 3345688889999999999888777654
No 352
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.84 E-value=9.1 Score=40.96 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=23.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS 97 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~ 97 (573)
..|.-..|.|||.++..++..+...+.. +.+.+|.
T Consensus 353 IaLVGPtGvGKTTtaakLAa~la~~~~g-kkVaLId 387 (559)
T PRK12727 353 IALVGPTGAGKTTTIAKLAQRFAAQHAP-RDVALVT 387 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCC-CceEEEe
Confidence 3566689999999987777766554221 3555554
No 353
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.67 E-value=7.9 Score=37.80 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=67.7
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC----cccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHh
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP----ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P----~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~ 135 (573)
....+.-..|+|||..+..+...+.... ..+.+|.- ...+.||+...... ++.+...
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~---~~v~~i~~D~~ri~~~~ql~~~~~~~--~~~~~~~-------------- 136 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKK---KTVGFITTDHSRIGTVQQLQDYVKTI--GFEVIAV-------------- 136 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEecCCCCHHHHHHHHHHhhhc--CceEEec--------------
Confidence 3446777899999998876666654321 34555554 24566776443321 1222211
Q ss_pred hhcccccCCCCceEEEeehHhHHhhHhhhhc-cCccEEEEcccccccCcchHHHHHHHhc----ccC-cEEEEeccCCCC
Q psy13010 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNR-IKWQYLILDEAQAIKSSSSMRWKLLLGF----SCR-NRLLLSGTPIQN 209 (573)
Q Consensus 136 ~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~-~~~~~vIiDE~h~~kn~~s~~~~~~~~l----~~~-~~~lLTgTP~~n 209 (573)
.+.+.+......+.. .++++||+|.+-+.-+. ......+..+ ... ..+.|+||--.+
T Consensus 137 ----------------~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~-~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 137 ----------------RDEAAMTRALTYFKEEARVDYILIDTAGKNYRA-SETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred ----------------CCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCC-HHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 112222222333332 36899999999765321 2223333332 222 356688887777
Q ss_pred CHHHHHHHHHhh
Q psy13010 210 SMAELWALLHFI 221 (573)
Q Consensus 210 ~~~el~~ll~~L 221 (573)
...+....++-+
T Consensus 200 d~~~~~~~f~~~ 211 (270)
T PRK06731 200 DMIEIITNFKDI 211 (270)
T ss_pred HHHHHHHHhCCC
Confidence 777666665543
No 354
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=88.65 E-value=0.45 Score=43.19 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=26.1
Q ss_pred CCceEEEeehHhHHhhHh--hh--hccCccEEEEcccccccC
Q psy13010 145 ASFHVVITSYQLVVSDFK--YF--NRIKWQYLILDEAQAIKS 182 (573)
Q Consensus 145 ~~~~i~i~sy~~~~~~~~--~l--~~~~~~~vIiDE~h~~kn 182 (573)
...+|+|++|..+..... .+ ...+-.+|||||||++-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 566899999998876421 22 223557899999999854
No 355
>PRK07004 replicative DNA helicase; Provisional
Probab=88.60 E-value=2.3 Score=45.15 Aligned_cols=114 Identities=18% Similarity=0.104 Sum_probs=63.6
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEE-eecCC--hhHHHHHHHHhhh
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVV-PYWGS--PQERKILRQFWDM 137 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~-~~~g~--~~~~~~~~~~~~~ 137 (573)
-.+|+..+|+|||.-++.++.......+ .|++++...--..++...+.....+.... +..|. ..+...+......
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~~~--~~v~~fSlEM~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~a~~~ 292 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVEYG--LPVAVFSMEMPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAVQK 292 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHcC--CeEEEEeCCCCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3489999999999999988876654322 48888888777777766664332222211 11121 2222222221111
Q ss_pred cccccCCCCceEEEe-----ehHhHHhhHhhhhc-c-CccEEEEcccccccC
Q psy13010 138 KNLHTKDASFHVVIT-----SYQLVVSDFKYFNR-I-KWQYLILDEAQAIKS 182 (573)
Q Consensus 138 ~~~~~~~~~~~i~i~-----sy~~~~~~~~~l~~-~-~~~~vIiDE~h~~kn 182 (573)
. ....++|. +...+......+.. . ..++||+|=-|.+..
T Consensus 293 l------~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 293 M------SEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred H------hcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 1 22234443 33334444444433 2 468999999998863
No 356
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=88.55 E-value=1.1 Score=42.67 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=30.2
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQ 106 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~ 106 (573)
+.+.++.-.+|+|||++|-|+..... -|+|.|-...++-...
T Consensus 151 PknVLFyGppGTGKTm~Akalane~k------vp~l~vkat~liGehV 192 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAK------VPLLLVKATELIGEHV 192 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccC------CceEEechHHHHHHHh
Confidence 45779999999999999977665432 3777776666655544
No 357
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=88.53 E-value=4.3 Score=42.99 Aligned_cols=87 Identities=15% Similarity=0.149 Sum_probs=55.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhhhcccc
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLH 141 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~ 141 (573)
.+|+-++|+|||..++-++..+...+ +++|.|....-..|......++.-...
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g---~kvlYvs~EEs~~qi~~ra~rlg~~~~------------------------ 149 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQ---MKVLYVSGEESLQQIKMRAIRLGLPEP------------------------ 149 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcC---CcEEEEECcCCHHHHHHHHHHcCCChH------------------------
Confidence 38899999999999988877766542 478888886666676655444321100
Q ss_pred cCCCCceEEEeehHhHHhhHhhhhccCccEEEEccccccc
Q psy13010 142 TKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIK 181 (573)
Q Consensus 142 ~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~k 181 (573)
.+.+.....+..-...+...++++||+|..+.+.
T Consensus 150 ------~l~~~~e~~~~~I~~~i~~~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 150 ------NLYVLSETNWEQICANIEEENPQACVIDSIQTLY 183 (454)
T ss_pred ------HeEEcCCCCHHHHHHHHHhcCCcEEEEecchhhc
Confidence 1112111122233344556689999999998764
No 358
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=88.49 E-value=1.2 Score=42.45 Aligned_cols=97 Identities=20% Similarity=0.365 Sum_probs=57.3
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEE--cCcccH---------------------HHHHHHHHHHCCCceEE
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII--SPASTL---------------------HNWQQEMERFVPDFKVV 119 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV--~P~~l~---------------------~qW~~el~~~~~~~~v~ 119 (573)
|..--=|.|||..+.++...+...+ +++|+| +|.+++ ..|.+...+...+..++
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G---~~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~L 82 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLG---ESVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDFL 82 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCC---CcEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEEE
Confidence 4444558999999988888888764 366665 555444 23555555555667777
Q ss_pred eecCChhH-HHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhh-ccCccEEEEcccc
Q psy13010 120 PYWGSPQE-RKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFN-RIKWQYLILDEAQ 178 (573)
Q Consensus 120 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~-~~~~~~vIiDE~h 178 (573)
.|...... +..+.. +......+......+. ...|++|++|=.+
T Consensus 83 PfG~l~~~~~~~~~~----------------l~~~~~~l~~~l~~l~~~~~~~~iliD~P~ 127 (243)
T PF06564_consen 83 PFGQLTEAEREAFEQ----------------LAQDPQWLARALAALKALGPYDWILIDTPP 127 (243)
T ss_pred cCCCCCHHHHHHHHH----------------hhcCHHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 77654332 221211 1111222334444555 5678899999776
No 359
>PRK09165 replicative DNA helicase; Provisional
Probab=88.35 E-value=3.7 Score=44.10 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=63.0
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcC------------CCCCEEEEcCcccHHHHHHHHHHHCCCceEEe-ecCC--h
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYD------------VWGPFLIISPASTLHNWQQEMERFVPDFKVVP-YWGS--P 125 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~------------~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~-~~g~--~ 125 (573)
-.+|+..+|+|||..++.++.......+ ...++|++...--..++...+.....+..... ..|. .
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v~~~~i~~~~l~~ 298 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRGKISE 298 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCH
Confidence 3589999999999999888776654321 12578888887777777666543322222111 1221 1
Q ss_pred hHHHHHHHHhhhcccccCCCCceEEEe-----ehHhHHhhHhhhh-ccCccEEEEcccccccC
Q psy13010 126 QERKILRQFWDMKNLHTKDASFHVVIT-----SYQLVVSDFKYFN-RIKWQYLILDEAQAIKS 182 (573)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~i~i~-----sy~~~~~~~~~l~-~~~~~~vIiDE~h~~kn 182 (573)
.+-..+..... ......+.|. +.+.+......+. ..+.++||||=.|.+..
T Consensus 299 ~e~~~l~~a~~------~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 299 EDFEKLVDASQ------ELQKLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLIRG 355 (497)
T ss_pred HHHHHHHHHHH------HHhcCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhccC
Confidence 12111221111 0112234432 2334444433332 45689999999998863
No 360
>PRK08006 replicative DNA helicase; Provisional
Probab=88.20 E-value=5.7 Score=42.29 Aligned_cols=53 Identities=23% Similarity=0.107 Sum_probs=38.9
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERF 112 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~ 112 (573)
.+.-.+|+.-+|+|||.-|+.++.......+ .+++++...--..++...+.-.
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g--~~V~~fSlEM~~~ql~~Rlla~ 275 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQD--KPVLIFSLEMPGEQIMMRMLAS 275 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcC--CeEEEEeccCCHHHHHHHHHHH
Confidence 3334599999999999999888877654322 4888888877777777666543
No 361
>CHL00176 ftsH cell division protein; Validated
Probab=88.12 E-value=4.7 Score=44.58 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=20.3
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
..+.+|.-++|+|||..|-+++...
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3467999999999999998776643
No 362
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=88.07 E-value=1.2 Score=40.57 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=24.8
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~ 99 (573)
++.-.|++|||...+..+......+ ++++++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~~---~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIAG---KKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT----EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhCC---CeEEEEEec
Confidence 5667999999998877776665542 478888874
No 363
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=87.98 E-value=3.3 Score=38.03 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=38.0
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhc-------CCCCCEEEEcCcccHHHHHHHHHHHC
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETY-------DVWGPFLIISPASTLHNWQQEMERFV 113 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~-------~~~~~~LIV~P~~l~~qW~~el~~~~ 113 (573)
+.-++|+-..|.|||..++.++..+.... ...+++|+|....-..++.+.+....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 44568899999999999999988887532 13468899988777767777776654
No 364
>PTZ00293 thymidine kinase; Provisional
Probab=87.94 E-value=4.3 Score=37.86 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=24.6
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~ 99 (573)
++.-.||+|||...+-.+...... .++++++.|.
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~a---g~kv~~~kp~ 41 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYS---EKKCVVIKYS 41 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHc---CCceEEEEec
Confidence 778899999998666655544443 2578999885
No 365
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=87.94 E-value=8.4 Score=37.99 Aligned_cols=47 Identities=13% Similarity=0.066 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCC--eEEeCCCCCCHHHHHHHHHHHHhhhc
Q psy13010 40 NLKHYQLKGMNWLANLYDQGIN--GILADEMGLGKTVQSIAFLCHIAETY 87 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~--~ll~de~G~GKT~~~ia~~~~~~~~~ 87 (573)
.|..-|..++..+...+..+.- ++|... |.||+..|..++..+....
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCC
Confidence 3667788888888777776653 344444 6899999999998887653
No 366
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=87.92 E-value=1.7 Score=49.24 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=30.4
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQ 106 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~ 106 (573)
..+.+|.-.+|+|||..|-++...+. .+++.|-+..++..|.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~------~~fi~v~~~~l~~~~v 528 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESG------ANFIAVRGPEILSKWV 528 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcC------CCEEEEehHHHhhccc
Confidence 44668899999999999877776542 2667776666665553
No 367
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=87.87 E-value=11 Score=36.78 Aligned_cols=127 Identities=17% Similarity=0.063 Sum_probs=68.0
Q ss_pred HHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEeecCChhHHH
Q psy13010 50 NWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERK 129 (573)
Q Consensus 50 ~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~ 129 (573)
.+|......++..+++-++|+|||.+.-+++..+... ...+++|=... |+ ..++.....
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~---~~~iv~iEd~~-------E~--~l~~~~~~~--------- 176 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE---DERIVTIEDPP-------EL--RLPGPNQIQ--------- 176 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT---TSEEEEEESSS--------S----SCSSEEE---------
T ss_pred HHHhhccccceEEEEECCCccccchHHHHHhhhcccc---ccceEEecccc-------ce--eecccceEE---------
Confidence 3454544556677999999999999998887766554 13444442210 11 001111110
Q ss_pred HHHHHhhhcccccCCCCceEEEe-ehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCCC
Q psy13010 130 ILRQFWDMKNLHTKDASFHVVIT-SYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208 (573)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~i~i~-sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~ 208 (573)
+... .-..+...........+++++++|.- +.. ...++......+...+ +|-+.
T Consensus 177 -------------------~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR---~~e--~~~~~~a~~tGh~~~~-tT~Ha 231 (270)
T PF00437_consen 177 -------------------IQTRRDEISYEDLLKSALRQDPDVIIIGEIR---DPE--AAEAIQAANTGHLGSL-TTLHA 231 (270)
T ss_dssp -------------------EEEETTTBSHHHHHHHHTTS--SEEEESCE----SCH--HHHHHHHHHTT-EEEE-EEEE-
T ss_pred -------------------EEeecCcccHHHHHHHHhcCCCCcccccccC---CHh--HHHHHHhhccCCceee-eeeec
Confidence 1111 01122233344555789999999995 333 3444666666665544 47788
Q ss_pred CCHHHHHHHHHhhC
Q psy13010 209 NSMAELWALLHFIM 222 (573)
Q Consensus 209 n~~~el~~ll~~L~ 222 (573)
++..+....+.-+.
T Consensus 232 ~s~~~~i~Rl~~l~ 245 (270)
T PF00437_consen 232 NSAEDAIERLADLG 245 (270)
T ss_dssp SSHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHh
Confidence 88888877666554
No 368
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=87.87 E-value=0.11 Score=46.31 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCccccccccc
Q psy13010 377 TILPEFPHVPRDPVILPQQPTYLPVCFFESTQN 409 (573)
Q Consensus 377 ~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~ 409 (573)
..|.+|....+.|+++.|+|.||.-|.......
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k 229 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK 229 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc
Confidence 589999999999999999999999997655543
No 369
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=87.70 E-value=11 Score=36.15 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=27.7
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhh---------cCCCCCEEEEcC
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAET---------YDVWGPFLIISP 98 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~---------~~~~~~~LIV~P 98 (573)
-++|+-..|+|||..++.++..+... ....+++|+++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~ 49 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA 49 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC
Confidence 36888899999999998887765531 123457888884
No 370
>KOG0991|consensus
Probab=87.53 E-value=3.5 Score=38.66 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.5
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
..+++-.+|+|||..+..+.+.++.
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHhC
Confidence 4599999999999999888887764
No 371
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=87.46 E-value=5.7 Score=44.61 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=18.7
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
..+|.-++|+|||..|-++....
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 45889999999999887776543
No 372
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=87.43 E-value=3.2 Score=43.50 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=25.4
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
..++.-.+|.|||.++..++..+...+ .++++|+.
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g---~kV~lV~~ 131 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKG---LKVGLVAA 131 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEecC
Confidence 347788999999999988887776542 24555554
No 373
>KOG1131|consensus
Probab=87.42 E-value=2.5 Score=44.06 Aligned_cols=71 Identities=20% Similarity=0.121 Sum_probs=55.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHH--HHHHHHH
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLH--NWQQEME 110 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~--qW~~el~ 110 (573)
..+|-|.....-+.+.+..++-|+|-.+.|+|||+.-++++.......+..-.-||-|...+-+ .-..|+.
T Consensus 16 ~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 16 YIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred ccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHH
Confidence 6899999988877788888889999999999999999998888777666444568888865433 3444544
No 374
>KOG0978|consensus
Probab=87.40 E-value=0.097 Score=56.63 Aligned_cols=31 Identities=16% Similarity=0.030 Sum_probs=27.3
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCCccccc
Q psy13010 375 EGTILPEFPHVPRDPVILPQQPTYLPVCFFE 405 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~ 405 (573)
..--|+.|+....+.+|+.|+|.||..|+-.
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~ 672 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQT 672 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHH
Confidence 3356999999999999999999999999753
No 375
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=87.26 E-value=6.3 Score=39.53 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhc
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETY 87 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~ 87 (573)
-++.-+.|+|||..|.++...+....
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 48888899999999999999998654
No 376
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.22 E-value=11 Score=41.68 Aligned_cols=41 Identities=22% Similarity=0.090 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhCCCC---eEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 45 QLKGMNWLANLYDQGIN---GILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~---~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
|.+.+..+.+.+..+.- -|+.-+.|.|||..|..+...+..
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45555555555554432 389999999999988888887753
No 377
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=87.15 E-value=0.19 Score=32.16 Aligned_cols=28 Identities=29% Similarity=0.435 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCcccCCCCCCCCcccccc
Q psy13010 379 LPEFPHVPRDPVILPQQPTYLPVCFFES 406 (573)
Q Consensus 379 ~~~~~~~~~~~~~~~c~h~~~~~c~~~~ 406 (573)
|++|.+....+.+++|+|.||..|+...
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~ 28 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKW 28 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHH
Confidence 5778888889999999999999997543
No 378
>PRK05748 replicative DNA helicase; Provisional
Probab=87.15 E-value=6.2 Score=41.83 Aligned_cols=114 Identities=14% Similarity=0.056 Sum_probs=62.6
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEE-eecCC--hhHHHHHHHHhh
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVV-PYWGS--PQERKILRQFWD 136 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~-~~~g~--~~~~~~~~~~~~ 136 (573)
.-.+|+-.+|+|||.-++.++.......+ .+++++...--..+....+.....+.... +..|. ..+...+.....
T Consensus 204 ~livIaarpg~GKT~~al~ia~~~a~~~g--~~v~~fSlEms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~~ 281 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALNIAQNVATKTD--KNVAIFSLEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAMG 281 (448)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHhCC--CeEEEEeCCCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHH
Confidence 34599999999999999988887654322 48888888777777666664332222211 11121 111111111111
Q ss_pred hcccccCCCCceEEEe-----ehHhHHhhHhhhh-cc-CccEEEEccccccc
Q psy13010 137 MKNLHTKDASFHVVIT-----SYQLVVSDFKYFN-RI-KWQYLILDEAQAIK 181 (573)
Q Consensus 137 ~~~~~~~~~~~~i~i~-----sy~~~~~~~~~l~-~~-~~~~vIiDE~h~~k 181 (573)
.. ....+.|. +-+.+......+. .. +.++||||=.|.+.
T Consensus 282 ~l------~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 282 SL------SDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HH------hcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 11 11223432 2333444443333 23 58899999999985
No 379
>KOG0924|consensus
Probab=87.09 E-value=1.6 Score=47.04 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=21.2
Q ss_pred HHHHHhCCCCeEEeCCCCCCHHHHHHHHH
Q psy13010 52 LANLYDQGINGILADEMGLGKTVQSIAFL 80 (573)
Q Consensus 52 l~~~~~~~~~~ll~de~G~GKT~~~ia~~ 80 (573)
|+..+..+.-.+|..|+|+|||.+.--++
T Consensus 364 ll~~ir~n~vvvivgETGSGKTTQl~QyL 392 (1042)
T KOG0924|consen 364 LLSVIRENQVVVIVGETGSGKTTQLAQYL 392 (1042)
T ss_pred HHHHHhhCcEEEEEecCCCCchhhhHHHH
Confidence 34445567777899999999999864443
No 380
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=87.06 E-value=6.5 Score=35.26 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=34.0
Q ss_pred cCccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHHhhC
Q psy13010 167 IKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIM 222 (573)
Q Consensus 167 ~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~ 222 (573)
-++++||+|=...+.+. ... +..+.....+++..+|-.....+....+.++.
T Consensus 66 ~~yD~VIiD~pp~~~~~---~~~-~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~ 117 (169)
T cd02037 66 GELDYLVIDMPPGTGDE---HLT-LAQSLPIDGAVIVTTPQEVALDDVRKAIDMFK 117 (169)
T ss_pred CCCCEEEEeCCCCCcHH---HHH-HHhccCCCeEEEEECCchhhHHHHHHHHHHHH
Confidence 47999999988765321 221 22123345566666888888888888887773
No 381
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=86.86 E-value=1.4 Score=45.33 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=20.5
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
+.+.+|.-++|+|||..|-++...+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 4567999999999999988776654
No 382
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=86.84 E-value=1 Score=40.97 Aligned_cols=47 Identities=26% Similarity=0.268 Sum_probs=31.7
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHH
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEME 110 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~ 110 (573)
..+.+.+|.-++|+|||..|.|++..+...+ .+++.+. ...+.+++.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g---~~v~f~~----~~~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG---YSVLFIT----ASDLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEE----HHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC---cceeEee----cCceecccc
Confidence 4566678888999999999999998888753 3556654 334555554
No 383
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=86.75 E-value=4.4 Score=47.34 Aligned_cols=128 Identities=16% Similarity=0.096 Sum_probs=73.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVV 119 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~ 119 (573)
.|.+-|++++..+. ..+.-++|.-..|+|||.+.-++...+... + ..++.++|.+-.- ..|.+-. +...
T Consensus 381 ~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~-G--~~V~g~ApTgkAA---~~L~e~~-Gi~a- 449 (1102)
T PRK13826 381 RLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWEAA-G--YRVVGGALAGKAA---EGLEKEA-GIQS- 449 (1102)
T ss_pred CCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHHHc-C--CeEEEEcCcHHHH---HHHHHhh-CCCe-
Confidence 69999999997652 334456888899999998877766655443 2 3677788854333 2332221 1100
Q ss_pred eecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhc-ccCc
Q psy13010 120 PYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF-SCRN 198 (573)
Q Consensus 120 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l-~~~~ 198 (573)
......+... + .....+ -.-++|||||+..+.... ..+.+... .+..
T Consensus 450 -----~TIas~ll~~----~-------------------~~~~~l--~~~~vlVIDEAsMv~~~~--m~~Ll~~~~~~ga 497 (1102)
T PRK13826 450 -----RTLSSWELRW----N-------------------QGRDQL--DNKTVFVLDEAGMVASRQ--MALFVEAVTRAGA 497 (1102)
T ss_pred -----eeHHHHHhhh----c-------------------cCccCC--CCCcEEEEECcccCCHHH--HHHHHHHHHhcCC
Confidence 0000000000 0 000011 135699999999885443 33444444 3678
Q ss_pred EEEEeccCCCCC
Q psy13010 199 RLLLSGTPIQNS 210 (573)
Q Consensus 199 ~~lLTgTP~~n~ 210 (573)
+++|.|=|.+-.
T Consensus 498 rvVLVGD~~QL~ 509 (1102)
T PRK13826 498 KLVLVGDPEQLQ 509 (1102)
T ss_pred EEEEECCHHHcC
Confidence 999999886643
No 384
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=86.68 E-value=8.2 Score=40.72 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=35.1
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHH
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEME 110 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~ 110 (573)
-.+|+-.+|+|||..++.++.......+ .+++++....-..+-...+.
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g--~~vl~~SlEm~~~~i~~R~~ 244 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEG--KPVAFFSLEMSAEQLAMRML 244 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCC--CeEEEEeCcCCHHHHHHHHH
Confidence 3489999999999999988877665322 47888888666666554443
No 385
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=86.62 E-value=3.2 Score=42.13 Aligned_cols=20 Identities=30% Similarity=0.159 Sum_probs=15.5
Q ss_pred eEEeCCCCCCHHHHHHHHHH
Q psy13010 62 GILADEMGLGKTVQSIAFLC 81 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~ 81 (573)
.|+--++|+|||..|-.+..
T Consensus 51 mIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 51 MILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 48899999999987744443
No 386
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=86.57 E-value=13 Score=35.35 Aligned_cols=48 Identities=21% Similarity=0.325 Sum_probs=35.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHH
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERF 112 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~ 112 (573)
.++.-++|+|||..+..++......+ +++++|.-..-..+..+.+..+
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~~~~g---~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGALKQG---KKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhCC---CEEEEEEcCCCHHHHHHHHHHC
Confidence 48889999999999999877655432 4778888766666666666554
No 387
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=86.51 E-value=4.4 Score=42.56 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=34.9
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHH
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEME 110 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~ 110 (573)
-.+|+-.+|+|||..++.++.......+ .+++++....-..+....+.
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g--~~v~~fSlEm~~~~l~~Rl~ 243 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREG--KPVLFFSLEMSAEQLGERLL 243 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCC--CcEEEEECCCCHHHHHHHHH
Confidence 3499999999999999988866653222 48899987665666655543
No 388
>PRK08939 primosomal protein DnaI; Reviewed
Probab=86.51 E-value=4.2 Score=40.56 Aligned_cols=43 Identities=14% Similarity=0.085 Sum_probs=30.3
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHN 104 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~q 104 (573)
+.|.+|.-.+|+|||..+.|++..+...+ .+++++.-+.++..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g---~~v~~~~~~~l~~~ 198 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKG---VSSTLLHFPEFIRE 198 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC---CCEEEEEHHHHHHH
Confidence 34557888999999999999999998653 24555544444433
No 389
>KOG1785|consensus
Probab=86.42 E-value=0.24 Score=49.03 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=33.5
Q ss_pred CCCCCCCCCCCcccCCCCCCCCccccc---ccccCCchhhhhhh
Q psy13010 379 LPEFPHVPRDPVILPQQPTYLPVCFFE---STQNMVSPALKKKI 419 (573)
Q Consensus 379 ~~~~~~~~~~~~~~~c~h~~~~~c~~~---~~~~~~~~~~~~~~ 419 (573)
|.||.+...+..|.+|+|..|..|.-. +.-...||-|||.+
T Consensus 372 CKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 372 CKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEI 415 (563)
T ss_pred HHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEe
Confidence 667788888899999999999999753 33367889999887
No 390
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=86.37 E-value=2.8 Score=44.66 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCCCe---EEeCCCCCCHHHHHHHHHHHHhhhc
Q psy13010 45 QLKGMNWLANLYDQGING---ILADEMGLGKTVQSIAFLCHIAETY 87 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~~---ll~de~G~GKT~~~ia~~~~~~~~~ 87 (573)
|...+..|.+.+..+.-. ++.-.-|+|||.+|=-++..+....
T Consensus 21 Qe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~ 66 (515)
T COG2812 21 QEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN 66 (515)
T ss_pred cHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC
Confidence 666777777766655433 8888999999999877777776653
No 391
>PRK08506 replicative DNA helicase; Provisional
Probab=86.30 E-value=6.5 Score=41.92 Aligned_cols=48 Identities=17% Similarity=0.100 Sum_probs=36.7
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHH
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMER 111 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~ 111 (573)
-.+|+..+|+|||..++.++...... + .+++++...--..+....+..
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~-g--~~V~~fSlEMs~~ql~~Rlla 241 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQ-D--KGVAFFSLEMPAEQLMLRMLS 241 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhc-C--CcEEEEeCcCCHHHHHHHHHH
Confidence 34999999999999999888776543 2 488899887777777666643
No 392
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=86.16 E-value=7.5 Score=38.99 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhCCCC--e-EEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGIN--G-ILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~--~-ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|..++..+.+.+..+.. + ++.-+.|.|||..|.+++..+...
T Consensus 9 ~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 9 HENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred cHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 34444444455544432 2 889999999999999998887643
No 393
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=86.13 E-value=4.1 Score=41.92 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=22.2
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
..|..++|..+.|+|||..+-.+...+...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 356667888899999998777766665544
No 394
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=85.99 E-value=4.1 Score=43.24 Aligned_cols=137 Identities=13% Similarity=0.066 Sum_probs=75.4
Q ss_pred chhhhccHHHHHHHHHHHHHHHhCCCCe------EEeCCCCCCHHHHHHHHHHHHhhhc-CCCCCEEEEcCcccHH-HHH
Q psy13010 35 GLFRGNLKHYQLKGMNWLANLYDQGING------ILADEMGLGKTVQSIAFLCHIAETY-DVWGPFLIISPASTLH-NWQ 106 (573)
Q Consensus 35 ~~l~~~L~~~Q~~~v~~l~~~~~~~~~~------ll~de~G~GKT~~~ia~~~~~~~~~-~~~~~~LIV~P~~l~~-qW~ 106 (573)
++..-.|.|||...+.-+.....++.+. +|.-.-|-|||..+.+++....--. .....++|++|..-.- +=.
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhh
Confidence 4445589999999998776555555443 7888899999988765555433211 2234678888853222 223
Q ss_pred HHHHHHCCCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhH-------HhhHhhhhccCccEEEEccccc
Q psy13010 107 QEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLV-------VSDFKYFNRIKWQYLILDEAQA 179 (573)
Q Consensus 107 ~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~-------~~~~~~l~~~~~~~vIiDE~h~ 179 (573)
+.++......+ . ++.. .......+. +.+... ..+.+.....++...|+||-|.
T Consensus 136 ~~ar~mv~~~~---------~---l~~~-------~~~q~~s~~-i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~ 195 (546)
T COG4626 136 NPARDMVKRDD---------D---LRDL-------CNVQTHSRT-ITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHL 195 (546)
T ss_pred HHHHHHHHhCc---------c---hhhh-------hccccceeE-EEecccceeeeeeccCCCcccCCCcceEEEehhhh
Confidence 33322211100 0 0000 000111111 222222 2344566677899999999999
Q ss_pred ccCcchHHHHHHH
Q psy13010 180 IKSSSSMRWKLLL 192 (573)
Q Consensus 180 ~kn~~s~~~~~~~ 192 (573)
++++. ..+..+.
T Consensus 196 f~~~~-~~~~~~~ 207 (546)
T COG4626 196 FGKQE-DMYSEAK 207 (546)
T ss_pred hcCHH-HHHHHHH
Confidence 99875 3344333
No 395
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=85.90 E-value=1.8 Score=42.32 Aligned_cols=112 Identities=19% Similarity=0.180 Sum_probs=68.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHH-----HHHHHHHHHC----CCceEEeecCChhHHHHH
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLH-----NWQQEMERFV----PDFKVVPYWGSPQERKIL 131 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~-----qW~~el~~~~----~~~~v~~~~g~~~~~~~~ 131 (573)
|++.-.+|.||+-..=.++..-+-. +...++..|+| +.++. -|.-++.+-. |+..++.-.|+
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~-P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t------- 161 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQ-PPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGT------- 161 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCccc-CCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccc-------
Confidence 5888999999996655555444433 55678999999 55543 3998887632 22334333332
Q ss_pred HHHhhhcccccCCCCceEEEeehHhHHhhH-----------hhhhccCccEEEEcccccccCcchHHHHHHHhc
Q psy13010 132 RQFWDMKNLHTKDASFHVVITSYQLVVSDF-----------KYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF 194 (573)
Q Consensus 132 ~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~-----------~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l 194 (573)
-..+.+-++|+.+..+. ..-.+.++-.||+||+=.--...+..++...++
T Consensus 162 -------------~~P~Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe~Lg~~~~is~fFHAl 222 (369)
T PF02456_consen 162 -------------FRPKFVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECMEKLGSHKSISKFFHAL 222 (369)
T ss_pred -------------ccccceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHHHhcCCCChhHHHhcC
Confidence 34467888888776542 122235788999999944322233344444444
No 396
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=85.88 E-value=15 Score=36.87 Aligned_cols=127 Identities=16% Similarity=0.124 Sum_probs=70.9
Q ss_pred HHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEeecCChhHHHH
Q psy13010 51 WLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKI 130 (573)
Q Consensus 51 ~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~ 130 (573)
+|......+.+.+++-.+|+|||..+-+++..+....+. .++++|=... |+. ++....+.+...
T Consensus 140 ~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~-~rivtIEd~~-------El~--~~~~~~v~~~~~------ 203 (319)
T PRK13894 140 AIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPT-ERVFIIEDTG-------EIQ--CAAENYVQYHTS------ 203 (319)
T ss_pred HHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCC-ceEEEEcCCC-------ccc--cCCCCEEEEecC------
Confidence 455556677788999999999998887877765432222 2444433321 111 111111111100
Q ss_pred HHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCCCCC
Q psy13010 131 LRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNS 210 (573)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~n~ 210 (573)
. . .+ +..........+++++|+.|.- +. ..+..++.+...+.-.+ +|-+.|+
T Consensus 204 --------------~--~---~~---~~~ll~~aLR~~PD~IivGEiR---~~--Ea~~~l~A~~tGh~G~~-tTiHa~s 255 (319)
T PRK13894 204 --------------I--D---VN---MTALLKTTLRMRPDRILVGEVR---GP--EALDLLMAWNTGHEGGA-ATLHANN 255 (319)
T ss_pred --------------C--C---CC---HHHHHHHHhcCCCCEEEEeccC---CH--HHHHHHHHHHcCCCceE-EEECCCC
Confidence 0 0 12 2233344456799999999984 22 24455666665554223 6788888
Q ss_pred HHHHHHHHHhh
Q psy13010 211 MAELWALLHFI 221 (573)
Q Consensus 211 ~~el~~ll~~L 221 (573)
+.+...-+.-+
T Consensus 256 ~~~ai~Rl~~l 266 (319)
T PRK13894 256 AKAGLDRLKSL 266 (319)
T ss_pred HHHHHHHHHHH
Confidence 88876655433
No 397
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=85.85 E-value=4.9 Score=37.79 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=16.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q psy13010 62 GILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~ 83 (573)
.|+.-++|+|||..|-.+...+
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCccchhHHHHHHHhcc
Confidence 5999999999998774444443
No 398
>KOG0952|consensus
Probab=85.80 E-value=0.66 Score=52.17 Aligned_cols=108 Identities=20% Similarity=0.261 Sum_probs=72.6
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHH----HHHHHHHHHCCCceEEeecCChhHHHHHHHHh
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLH----NWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~----qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~ 135 (573)
..++.+..|.|||+.+-..+-.....++. +++.+|+| +.++. .|...+.. |+.+++-..|.....
T Consensus 945 ~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~~--~g~k~ie~tgd~~pd------- 1014 (1230)
T KOG0952|consen 945 NFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDEL--PGIKVIELTGDVTPD------- 1014 (1230)
T ss_pred hhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhccc--CCceeEeccCccCCC-------
Confidence 45788999999999985555555555444 68899999 55554 37655533 467777666642211
Q ss_pred hhcccccCCCCceEEEeehHhHHhhHhhhhcc----CccEEEEcccccccCc
Q psy13010 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRI----KWQYLILDEAQAIKSS 183 (573)
Q Consensus 136 ~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~----~~~~vIiDE~h~~kn~ 183 (573)
.......+++|||.++.-.-.+.+... ....+|+||.|..+..
T Consensus 1015 -----~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 -----VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred -----hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 123356689999999886655544443 3456999999998653
No 399
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=85.66 E-value=3.6 Score=46.16 Aligned_cols=67 Identities=9% Similarity=0.045 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhh-cCCCCCEEEEcC-cccHHHHHHHHHHHC
Q psy13010 41 LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAET-YDVWGPFLIISP-ASTLHNWQQEMERFV 113 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~-~~~~~~~LIV~P-~~l~~qW~~el~~~~ 113 (573)
|.|-|++++.+ ..+..++...+|+|||.+.+.-+..+... +-.++.+|+|+. .....+-++.+.+..
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889999852 25566778899999999999888888764 223456777765 566666777776654
No 400
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=85.64 E-value=5 Score=45.28 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=21.1
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
..+.+|.-++|+|||..+-++...+..
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~ 233 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 345688899999999998777765544
No 401
>PHA02926 zinc finger-like protein; Provisional
Probab=85.58 E-value=0.21 Score=45.79 Aligned_cols=51 Identities=6% Similarity=-0.033 Sum_probs=35.4
Q ss_pred chhhccccCCCCCCCCCCCC---------CcccCCCCCCCCcccccccc-------cCCchhhhhhh
Q psy13010 369 RQMEREEGTILPEFPHVPRD---------PVILPQQPTYLPVCFFESTQ-------NMVSPALKKKI 419 (573)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~---------~~~~~c~h~~~~~c~~~~~~-------~~~~~~~~~~~ 419 (573)
...+.+.+..|++|.+..-. ..+.+|+|.||-.|+..=.. ...||.||..-
T Consensus 163 ~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 163 DVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred HHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 34455677999999986422 35679999999999863322 23488887653
No 402
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=85.50 E-value=8.9 Score=34.47 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.0
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
++.-.+|.|||..+..++..+...
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC
Confidence 567799999999998888877665
No 403
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=85.49 E-value=2.2 Score=42.20 Aligned_cols=63 Identities=21% Similarity=0.073 Sum_probs=54.9
Q ss_pred ccccccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhC--CCeEEEecCCCCHHHHH
Q psy13010 493 TLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYR--KYRFMRLDGSSKISERR 555 (573)
Q Consensus 493 ~~~~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~--gi~~~~i~G~~~~~~R~ 555 (573)
+.+..++|.+.+.+-|+..+++|..|.|-|.-+++---|...|++. +.+...++|+.+..-|.
T Consensus 122 ~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~fr~ 186 (441)
T COG4098 122 WAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYFRA 186 (441)
T ss_pred EEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhccc
Confidence 3456799999999999999999999999999999888888888874 78889999999887774
No 404
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=85.47 E-value=2.7 Score=45.15 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=19.7
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCH 82 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~ 82 (573)
..+.+|.-++|+|||..+-+++..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 446799999999999998777654
No 405
>KOG1807|consensus
Probab=85.40 E-value=2.6 Score=46.07 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=57.5
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhc---CCCCCEEEEcC-cccHHHHHHHHHHHCCC
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY---DVWGPFLIISP-ASTLHNWQQEMERFVPD 115 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~---~~~~~~LIV~P-~~l~~qW~~el~~~~~~ 115 (573)
.|.+-|..|.+.+.. ..-.|+--.+|+|||.+.+-++..+.... ....|+||||- .+.+.|.-..+..+ ..
T Consensus 378 ildsSq~~A~qs~lt----yelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~-qr 452 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLT----YELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYH-QR 452 (1025)
T ss_pred eecHHHHHHHHHHhh----hhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHhc-CC
Confidence 577789999887654 44458889999999999988888776543 34569999998 78888887777653 23
Q ss_pred ceEEeecCC
Q psy13010 116 FKVVPYWGS 124 (573)
Q Consensus 116 ~~v~~~~g~ 124 (573)
..++ ..|+
T Consensus 453 psIm-r~gs 460 (1025)
T KOG1807|consen 453 PSIM-RQGS 460 (1025)
T ss_pred ceEE-Eecc
Confidence 3443 3444
No 406
>PRK05636 replicative DNA helicase; Provisional
Probab=85.36 E-value=5.8 Score=42.55 Aligned_cols=113 Identities=16% Similarity=0.161 Sum_probs=61.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEee-cCC--hhHHHHHHHHhhhc
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY-WGS--PQERKILRQFWDMK 138 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~-~g~--~~~~~~~~~~~~~~ 138 (573)
.+|+-.+|+|||..++.++.......+ .+++++...--..++...+.-...+.....+ .|. ..+...+.....
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g--~~v~~fSlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~~~~a~~-- 343 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHN--KASVIFSLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQRLG-- 343 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHH--
Confidence 488999999999999988876654322 4888887766666665555332212111111 111 112111111111
Q ss_pred ccccCCCCceEEEe-----ehHhHHhhHhhhh-ccCccEEEEcccccccC
Q psy13010 139 NLHTKDASFHVVIT-----SYQLVVSDFKYFN-RIKWQYLILDEAQAIKS 182 (573)
Q Consensus 139 ~~~~~~~~~~i~i~-----sy~~~~~~~~~l~-~~~~~~vIiDE~h~~kn 182 (573)
......++|. +.+.++.....+. ..+.++||||=.|.+.+
T Consensus 344 ----~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~ 389 (505)
T PRK05636 344 ----KIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMSS 389 (505)
T ss_pred ----HHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCC
Confidence 1122334443 2333444444332 35678999999999863
No 407
>PRK12608 transcription termination factor Rho; Provisional
Probab=85.25 E-value=5.9 Score=40.42 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 48 GMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 48 ~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
++..+.- .-++.+++|.-++|+|||..+..++..+...
T Consensus 123 vID~l~P-iGkGQR~LIvG~pGtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 123 VVDLVAP-IGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred hhhheee-cCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4444432 2356777889999999999888877777664
No 408
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=85.23 E-value=3.7 Score=40.94 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=19.2
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
..+|.-++|+|||..+.++...+
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46999999999999888776654
No 409
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=85.11 E-value=6.9 Score=31.53 Aligned_cols=61 Identities=10% Similarity=0.038 Sum_probs=43.4
Q ss_pred HHHHHhCCCeEEEEec------chhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceE
Q psy13010 508 LKRLKASGHRVLVYSQ------MTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSV 569 (573)
Q Consensus 508 i~~~~~~~~KvlIFsq------~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 569 (573)
++++.+ ..+|+||+. +...=..+.+.|...|++|..++=....+.|+..........-..|
T Consensus 5 v~~~i~-~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v 71 (97)
T TIGR00365 5 IKEQIK-ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL 71 (97)
T ss_pred HHHHhc-cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence 344333 469999974 6777888999999999999998876666777776665554433333
No 410
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=84.85 E-value=2.5 Score=41.17 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 43 HYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 43 ~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
|.....+..+......+...+|..++|+|||..|.++...+
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 44555555566666677888999999999999998877633
No 411
>PHA00012 I assembly protein
Probab=84.75 E-value=2.1 Score=42.34 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=26.2
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHH
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNW 105 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW 105 (573)
++.-.+|.|||+.+++-+.....++ . .|++-..+...+
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~G----r-~VaTNidL~le~ 42 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKG----C-IVATNLNLRLHH 42 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcC----C-EEEeCCccchhh
Confidence 5666899999999998777666653 3 566665544433
No 412
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.52 E-value=8.4 Score=38.58 Aligned_cols=135 Identities=17% Similarity=0.061 Sum_probs=76.4
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCce-E
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFK-V 118 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~-v 118 (573)
.+.+.|.+. |+.....+...+++-++|+|||....+++..+... .+++.|=-. .|+. .|+.. +
T Consensus 127 t~~~~~~ay---L~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~----~rivtIEdt-------~E~~--~~~~n~~ 190 (312)
T COG0630 127 TISPEQAAY---LWLAIEARKSIIICGGTASGKTTLLNALLDFIPPE----ERIVTIEDT-------PELK--LPHENWV 190 (312)
T ss_pred CCCHHHHHH---HHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCch----hcEEEEecc-------cccc--CCCCCEE
Confidence 566666666 45566778889999999999999888877776554 233333110 0110 01111 1
Q ss_pred EeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcccCc
Q psy13010 119 VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRN 198 (573)
Q Consensus 119 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~ 198 (573)
.++..... .. .+--.+......-...+++++|++|.+. ...+-.++.+...+
T Consensus 191 ~l~~r~~~-------------------~~----~~~v~~~dll~aalR~rPd~IivgEvrg-----~e~~~~~~a~~tGh 242 (312)
T COG0630 191 QLVTREGE-------------------SG----SSEVSLEDLLRAALRQRPDYIIVGELRG-----REAFVLFQAMQTGH 242 (312)
T ss_pred EEEecCCC-------------------CC----ccccCHHHHHHHHHhcCCCeEEEeeeec-----HHHHHHHHHHhcCC
Confidence 11111000 00 0001122233445567999999999973 22355566666666
Q ss_pred EEEEeccCCCCCHHHHHHHHHh
Q psy13010 199 RLLLSGTPIQNSMAELWALLHF 220 (573)
Q Consensus 199 ~~lLTgTP~~n~~~el~~ll~~ 220 (573)
.-=+|.+..++..++..+.-
T Consensus 243 --~~isT~ha~s~~~~~~rl~~ 262 (312)
T COG0630 243 --GTISTIHADSPELVLDRLTE 262 (312)
T ss_pred --CceeEEecCCHHHHHHHHhh
Confidence 44467888888887776663
No 413
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=84.48 E-value=6.3 Score=38.50 Aligned_cols=52 Identities=17% Similarity=0.088 Sum_probs=35.8
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMER 111 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~ 111 (573)
.+.-.+|+-.+|+|||..++.++.......+ .+++++.-..-..+....+..
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g--~~vl~iS~E~~~~~~~~r~~~ 80 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHG--VRVGTISLEEPVVRTARRLLG 80 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcC--ceEEEEEcccCHHHHHHHHHH
Confidence 3445689999999999999888877655422 477888765545555444433
No 414
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.43 E-value=29 Score=35.71 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=29.7
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc----ccHHHHHHHH
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA----STLHNWQQEM 109 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~----~l~~qW~~el 109 (573)
++.-..|.|||.++..++..+...+ .++.+|+-. ..++||+.-.
T Consensus 210 ~lvGptGvGKTTt~akLA~~l~~~g---~~V~lItaDtyR~gAveQLk~ya 257 (407)
T PRK12726 210 SLIGQTGVGKTTTLVKLGWQLLKQN---RTVGFITTDTFRSGAVEQFQGYA 257 (407)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCccCccHHHHHHHHh
Confidence 5666899999999988877665542 356666552 2367886544
No 415
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=84.40 E-value=9.7 Score=46.90 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=74.4
Q ss_pred hhhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCC-CCCEEEEcCcccHHHHHHHHHHHCCC
Q psy13010 37 FRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDV-WGPFLIISPASTLHNWQQEMERFVPD 115 (573)
Q Consensus 37 l~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~-~~~~LIV~P~~l~~qW~~el~~~~~~ 115 (573)
+...|.+-|++++..+.. ......+|.--.|+|||.+.-+++..+...... ...++.++|.+-.- .++.+. +
T Consensus 964 ~~~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAA---k~L~e~--G 1036 (1747)
T PRK13709 964 LMEGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAV---GEMRSA--G 1036 (1747)
T ss_pred hcCCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHH---HHHHhc--C
Confidence 334689999999976543 223566888899999999876666665432111 12567788865333 233221 1
Q ss_pred ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcc
Q psy13010 116 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFS 195 (573)
Q Consensus 116 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~ 195 (573)
. .+......+... +.+... ........+++||||+..+.+.. ..+.+..+.
T Consensus 1037 i------~A~TI~s~L~~~--------------------~~~~~~-~~~~~~~~~llIVDEaSMv~~~~--m~~Ll~~~~ 1087 (1747)
T PRK13709 1037 V------DAQTLASFLHDT--------------------QLQQRS-GETPDFSNTLFLLDESSMVGNTD--MARAYALIA 1087 (1747)
T ss_pred c------chhhHHHHhccc--------------------cccccc-ccCCCCCCcEEEEEccccccHHH--HHHHHHhhh
Confidence 0 011111111100 000000 00111345899999999986644 344444444
Q ss_pred -cCcEEEEeccCCC
Q psy13010 196 -CRNRLLLSGTPIQ 208 (573)
Q Consensus 196 -~~~~~lLTgTP~~ 208 (573)
...+++|.|=+-+
T Consensus 1088 ~~garvVLVGD~~Q 1101 (1747)
T PRK13709 1088 AGGGRAVSSGDTDQ 1101 (1747)
T ss_pred cCCCEEEEecchHh
Confidence 3578899887655
No 416
>KOG4265|consensus
Probab=84.40 E-value=0.2 Score=49.37 Aligned_cols=48 Identities=23% Similarity=0.202 Sum_probs=39.9
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCC-CCcccccc-cccCCchhhhhhhhH
Q psy13010 374 EEGTILPEFPHVPRDPVILPQQPTY-LPVCFFES-TQNMVSPALKKKIKI 421 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~c~h~~-~~~c~~~~-~~~~~~~~~~~~~~~ 421 (573)
+...+|-+|...+.+.+++||+|.+ |.+|...- ....+||.||..+..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 4468999999999999999999998 99997654 455679999887644
No 417
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=84.39 E-value=2.3 Score=45.37 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=46.6
Q ss_pred hhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHH---HHHHHHhhhcCCCCCEEEEcCcccHHHHHHHH
Q psy13010 38 RGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSI---AFLCHIAETYDVWGPFLIISPASTLHNWQQEM 109 (573)
Q Consensus 38 ~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~i---a~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el 109 (573)
..++.+-|-+.+++ ..+.-.++.-..|+|||.+|+ |++.+.....-..+++||+.|..+...+...+
T Consensus 210 V~TIQkEQneIIR~-----ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~V 279 (747)
T COG3973 210 VETIQKEQNEIIRF-----EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRV 279 (747)
T ss_pred HHHhhHhHHHHHhc-----cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHh
Confidence 34677778777642 234444788899999999997 44444444444467899999998888776555
No 418
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=84.23 E-value=30 Score=35.58 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=70.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc----ccHHH--HHHHHHHHCCCceEEeecCChhHHHHHHHHh
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA----STLHN--WQQEMERFVPDFKVVPYWGSPQERKILRQFW 135 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~----~l~~q--W~~el~~~~~~~~v~~~~g~~~~~~~~~~~~ 135 (573)
..|.-++|.|||.+..-+.+......+ ...+=||+-. ..++| |..++- +..+
T Consensus 206 i~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIGA~EQLk~Ya~im----~vp~----------------- 263 (407)
T COG1419 206 IALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIGAVEQLKTYADIM----GVPL----------------- 263 (407)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhhHHHHHHHHHHHh----CCce-----------------
Confidence 366779999999887555554442222 2455555542 22333 222221 1222
Q ss_pred hhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEccccc-ccCcchHHHHHHHhc-----ccCcEEEEeccCCCC
Q psy13010 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQA-IKSSSSMRWKLLLGF-----SCRNRLLLSGTPIQN 209 (573)
Q Consensus 136 ~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~-~kn~~s~~~~~~~~l-----~~~~~~lLTgTP~~n 209 (573)
.++.+..-+......+. ..|+|.+|-+-+ .++.. ....+..+ .....+.||+|--..
T Consensus 264 -------------~vv~~~~el~~ai~~l~--~~d~ILVDTaGrs~~D~~--~i~el~~~~~~~~~i~~~Lvlsat~K~~ 326 (407)
T COG1419 264 -------------EVVYSPKELAEAIEALR--DCDVILVDTAGRSQYDKE--KIEELKELIDVSHSIEVYLVLSATTKYE 326 (407)
T ss_pred -------------EEecCHHHHHHHHHHhh--cCCEEEEeCCCCCccCHH--HHHHHHHHHhccccceEEEEEecCcchH
Confidence 22333333434344444 349999998854 33322 22223332 234568999999999
Q ss_pred CHHHHHHHHHhhCCC
Q psy13010 210 SMAELWALLHFIMPS 224 (573)
Q Consensus 210 ~~~el~~ll~~L~~~ 224 (573)
++.+++..++.+...
T Consensus 327 dlkei~~~f~~~~i~ 341 (407)
T COG1419 327 DLKEIIKQFSLFPID 341 (407)
T ss_pred HHHHHHHHhccCCcc
Confidence 999999999988544
No 419
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=84.16 E-value=1.4 Score=44.49 Aligned_cols=49 Identities=12% Similarity=0.025 Sum_probs=35.3
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHH
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMER 111 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~ 111 (573)
..+.+.+|.-.+|+|||++|-+++..+.. ++++|....+...|..|=.+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~------~~i~vsa~eL~sk~vGEsEk 194 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI------EPIVMSAGELESENAGEPGK 194 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC------CeEEEEHHHhhcCcCCcHHH
Confidence 34556688889999999999888877643 45666667777778655433
No 420
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=83.63 E-value=11 Score=45.87 Aligned_cols=140 Identities=16% Similarity=0.107 Sum_probs=74.7
Q ss_pred hhhhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhc-CCCCCEEEEcCcccHHHHHHHHHHHCC
Q psy13010 36 LFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY-DVWGPFLIISPASTLHNWQQEMERFVP 114 (573)
Q Consensus 36 ~l~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~-~~~~~~LIV~P~~l~~qW~~el~~~~~ 114 (573)
.+...|.+-|++++..++. ......+|.-..|+|||.+.-+++..+.... .....++.++|.+-.- .+|.+.
T Consensus 831 ~~~~~Lt~~Qr~Av~~iLt--s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa---~~L~e~-- 903 (1623)
T PRK14712 831 ELMEKLTSGQRAATRMILE--TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAV---GEMRSA-- 903 (1623)
T ss_pred hhhcccCHHHHHHHHHHHh--CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHH---HHHHHh--
Confidence 3334799999999975543 2345678888999999998755555433211 1112567788854332 233221
Q ss_pred CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhc
Q psy13010 115 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF 194 (573)
Q Consensus 115 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l 194 (573)
|. ....+..+..... .+.. ...-.....+++|+||+..+.+.. ..+.+..+
T Consensus 904 --------Gi--~A~TIasfL~~~~----------------~~~~-~~~~~~~~~~llIVDEASMV~~~~--m~~ll~~~ 954 (1623)
T PRK14712 904 --------GV--DAQTLASFLHDTQ----------------LQQR-SGETPDFSNTLFLLDESSMVGNTD--MARAYALI 954 (1623)
T ss_pred --------Cc--hHhhHHHHhcccc----------------chhh-cccCCCCCCcEEEEEccccccHHH--HHHHHHhh
Confidence 11 0111111100000 0000 000011245899999999987643 33334444
Q ss_pred c-cCcEEEEeccCCCCCH
Q psy13010 195 S-CRNRLLLSGTPIQNSM 211 (573)
Q Consensus 195 ~-~~~~~lLTgTP~~n~~ 211 (573)
. ...+++|.|=+-+-..
T Consensus 955 ~~~garvVLVGD~~QL~s 972 (1623)
T PRK14712 955 AAGGGRAVASGDTDQLQA 972 (1623)
T ss_pred hhCCCEEEEEcchhhcCC
Confidence 3 3578999988766443
No 421
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=83.41 E-value=2.1 Score=47.82 Aligned_cols=67 Identities=10% Similarity=0.053 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhh-cCCCCCEEEEcC-cccHHHHHHHHHHHC
Q psy13010 41 LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAET-YDVWGPFLIISP-ASTLHNWQQEMERFV 113 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~-~~~~~~~LIV~P-~~l~~qW~~el~~~~ 113 (573)
|-+-|+++|.+ ..+..++...+|+|||.+.+.-+.++... +-.++.+|+|+- ......-++.+....
T Consensus 3 Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 3 LNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 77889999853 24566777799999999999988888764 223456888888 444445555555443
No 422
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=83.35 E-value=13 Score=35.43 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=31.1
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcc
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS 100 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~ 100 (573)
.+.-.+|+-.+|+|||..++.++.......+ .++++++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g--~~vly~s~E~ 52 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQG--KPVLFFSLEM 52 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CceEEEeCCC
Confidence 3444589999999999999988887776532 4888888543
No 423
>KOG0736|consensus
Probab=83.32 E-value=8.4 Score=42.52 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=22.8
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
.+..|.||.-.+|+|||+.|-|+.-.+.-
T Consensus 703 rkRSGILLYGPPGTGKTLlAKAVATEcsL 731 (953)
T KOG0736|consen 703 RKRSGILLYGPPGTGKTLLAKAVATECSL 731 (953)
T ss_pred cccceeEEECCCCCchHHHHHHHHhhcee
Confidence 34556799999999999999887766543
No 424
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=83.28 E-value=32 Score=34.64 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHHHHh----CCCCeEEeCCCCCCHHHHHHHHHHHHh
Q psy13010 41 LKHYQLKGMNWLANLYD----QGINGILADEMGLGKTVQSIAFLCHIA 84 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~----~~~~~ll~de~G~GKT~~~ia~~~~~~ 84 (573)
-++..+..+.-++.... .....+|.-++|+|||..+.++...+.
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC
Confidence 44555555543333221 123569999999999999987777653
No 425
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=83.24 E-value=3.8 Score=42.97 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=27.6
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHN 104 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~q 104 (573)
.+.+.+|.-++|+|||..|-++...+. .+++-|....+...
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~------~~fi~V~~seL~~k 256 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETS------ATFLRVVGSELIQK 256 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC------CCEEEEecchhhhh
Confidence 345679999999999999977776542 24455544444433
No 426
>PRK06321 replicative DNA helicase; Provisional
Probab=83.20 E-value=10 Score=40.33 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=64.2
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEee-cCC--hhHHHHHHH
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY-WGS--PQERKILRQ 133 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~-~g~--~~~~~~~~~ 133 (573)
..+.-.+|+.-+|+|||.-++.++.......+ .+++++...---.++...+.-...+.....+ .|. ..+-..+..
T Consensus 224 ~~G~LiiiaarPgmGKTafal~ia~~~a~~~g--~~v~~fSLEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~ 301 (472)
T PRK06321 224 SPSNLMILAARPAMGKTALALNIAENFCFQNR--LPVGIFSLEMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIVS 301 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHhcC--CeEEEEeccCCHHHHHHHHHHhhcCCCHHHhhcCCCCHHHHHHHHH
Confidence 33444599999999999999887776653322 4888998877777777666432212111111 121 122221111
Q ss_pred HhhhcccccCCCCceEEEe-----ehHhHHhhHhhhh-ccCccEEEEccccccc
Q psy13010 134 FWDMKNLHTKDASFHVVIT-----SYQLVVSDFKYFN-RIKWQYLILDEAQAIK 181 (573)
Q Consensus 134 ~~~~~~~~~~~~~~~i~i~-----sy~~~~~~~~~l~-~~~~~~vIiDE~h~~k 181 (573)
.... .....++|- +-+.++.....+. ..+.++||||=.|.+.
T Consensus 302 a~~~------l~~~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 302 VVNE------MQEHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHH------HHcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHHcC
Confidence 1111 122234443 2333444443332 3567899999999885
No 427
>CHL00195 ycf46 Ycf46; Provisional
Probab=83.03 E-value=2.1 Score=45.56 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=26.3
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcc
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS 100 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~ 100 (573)
.+.|.+|.-++|+|||..|-++...+. -|++.+-+..
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~------~~~~~l~~~~ 294 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQ------LPLLRLDVGK 294 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC------CCEEEEEhHH
Confidence 345679999999999999877766542 2666665443
No 428
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=82.96 E-value=23 Score=35.72 Aligned_cols=46 Identities=13% Similarity=0.141 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHHHHhCCC-CeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 41 LKHYQLKGMNWLANLYDQGI-NGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~~~~-~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
++|+|...-+-+.....+-. .-++.-+.|+|||..|..+...+.-.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 36777777665554422211 23789999999999999999888754
No 429
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=82.88 E-value=19 Score=36.12 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=24.0
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
.+.-..|.|||.++..+...+...+ +.++++.-
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l~~~g---~~V~Li~~ 150 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKYKAQG---KKVLLAAG 150 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhcC---CeEEEEec
Confidence 4556999999999988877776542 46676654
No 430
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=82.57 E-value=6.5 Score=44.58 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=19.7
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
+.+.+|.-++|+|||..+-++...+
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHh
Confidence 4566899999999998887766544
No 431
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=82.57 E-value=10 Score=39.67 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=25.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~ 99 (573)
.++.-..|.|||.++..++..+....+ .++++|+-.
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g--~kV~lV~~D 137 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQG--KKVLLVACD 137 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCC--CeEEEEecc
Confidence 478899999999999888887653222 255555543
No 432
>KOG0651|consensus
Probab=82.57 E-value=2.3 Score=41.61 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=31.8
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHH
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQ 107 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~ 107 (573)
+.+.+++|.-.+|+|||+++=+++..+--. | |.|+...++.....
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~n-----f-l~v~ss~lv~kyiG 208 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMGVN-----F-LKVVSSALVDKYIG 208 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcCCc-----e-EEeeHhhhhhhhcc
Confidence 456688999999999999997777766443 4 66665555554433
No 433
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=82.40 E-value=7.4 Score=38.71 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=64.4
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCC--CceEEeec-CChhHHHHHHHHhhhcc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVP--DFKVVPYW-GSPQERKILRQFWDMKN 139 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~--~~~v~~~~-g~~~~~~~~~~~~~~~~ 139 (573)
++.--.|.|||.++.-+...+...+ ..+|+.+-..-.--=.+++..|.. +..++--. |+....
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~~g---~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAa----------- 208 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQQG---KSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAA----------- 208 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHHCC---CeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHH-----------
Confidence 6666889999998877777776653 355666554333334455555542 33333211 211110
Q ss_pred cccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhc---------ccCcEEEE--eccCCC
Q psy13010 140 LHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF---------SCRNRLLL--SGTPIQ 208 (573)
Q Consensus 140 ~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l---------~~~~~~lL--TgTP~~ 208 (573)
+-|+.+ ..-...++|+|++|-+-|+-|.. ..-..++++ .+.+.++| -||--+
T Consensus 209 ------------VafDAi----~~Akar~~DvvliDTAGRLhnk~-nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq 271 (340)
T COG0552 209 ------------VAFDAI----QAAKARGIDVVLIDTAGRLHNKK-NLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ 271 (340)
T ss_pred ------------HHHHHH----HHHHHcCCCEEEEeCcccccCch-hHHHHHHHHHHHhccccCCCCceEEEEEEcccCh
Confidence 122222 33445689999999999987643 222223332 13343444 588777
Q ss_pred CCHH
Q psy13010 209 NSMA 212 (573)
Q Consensus 209 n~~~ 212 (573)
|.+.
T Consensus 272 nal~ 275 (340)
T COG0552 272 NALS 275 (340)
T ss_pred hHHH
Confidence 7654
No 434
>PRK10867 signal recognition particle protein; Provisional
Probab=82.28 E-value=13 Score=39.08 Aligned_cols=44 Identities=11% Similarity=0.190 Sum_probs=30.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc----ccHHHHHH
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA----STLHNWQQ 107 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~----~l~~qW~~ 107 (573)
.++.-..|.|||.++.-++..+....+ .++++|+-. ...+||..
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G--~kV~lV~~D~~R~aa~eQL~~ 150 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKK--KKVLLVAADVYRPAAIEQLKT 150 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcC--CcEEEEEccccchHHHHHHHH
Confidence 377889999999999888887766522 355666553 34456643
No 435
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=82.14 E-value=11 Score=36.49 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=26.1
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
+|+-++|+|||..++-++......+ .++++|.-
T Consensus 40 lI~G~pGtGKT~l~~qf~~~~a~~G---e~vlyis~ 72 (259)
T TIGR03878 40 NITGVSDTGKSLMVEQFAVTQASRG---NPVLFVTV 72 (259)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCC---CcEEEEEe
Confidence 8899999999999988877665542 47788874
No 436
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=81.94 E-value=3.9 Score=43.73 Aligned_cols=146 Identities=12% Similarity=0.049 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHhCCC------CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCC-EEEEcCcc-cHHHHHHHHHHHC-
Q psy13010 43 HYQLKGMNWLANLYDQGI------NGILADEMGLGKTVQSIAFLCHIAETYDVWGP-FLIISPAS-TLHNWQQEMERFV- 113 (573)
Q Consensus 43 ~~Q~~~v~~l~~~~~~~~------~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~-~LIV~P~~-l~~qW~~el~~~~- 113 (573)
|+|+..+..+... ..+. .+++.-.=|-|||..+.+++.+.+-..+..++ ++++++.. ....=.+++....
T Consensus 1 PwQ~fi~~~i~G~-~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGW-RKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhce-EcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 6788777655433 2111 24666688999999887766655543333344 55555532 1111123333322
Q ss_pred --CCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEe----ehHhHHhhHhhhhccCccEEEEcccccccCcchHH
Q psy13010 114 --PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVIT----SYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMR 187 (573)
Q Consensus 114 --~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~----sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~ 187 (573)
|.+.... +. .+.. .....|... .+..+.++.+......+.++|+||.|..++. ..
T Consensus 80 ~~~~l~~~~--~~-----~~~~----------~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~--~~ 140 (477)
T PF03354_consen 80 ASPELRKRK--KP-----KIIK----------SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDD--EL 140 (477)
T ss_pred hChhhccch--hh-----hhhh----------hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCH--HH
Confidence 2222100 00 0000 000111111 1112234456667778999999999999874 24
Q ss_pred HHHHHhcc---cCcEEEEeccCCC
Q psy13010 188 WKLLLGFS---CRNRLLLSGTPIQ 208 (573)
Q Consensus 188 ~~~~~~l~---~~~~~lLTgTP~~ 208 (573)
+.++..-. ....++...|+-.
T Consensus 141 ~~~l~~g~~~r~~pl~~~ISTag~ 164 (477)
T PF03354_consen 141 YDALESGMGARPNPLIIIISTAGD 164 (477)
T ss_pred HHHHHhhhccCCCceEEEEeCCCC
Confidence 45544432 2334444455433
No 437
>PRK05595 replicative DNA helicase; Provisional
Probab=81.92 E-value=6.1 Score=41.82 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=62.1
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEee-cCC--hhHHHHHHHHhhh
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY-WGS--PQERKILRQFWDM 137 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~-~g~--~~~~~~~~~~~~~ 137 (573)
-.+|+..+|+|||..++.++..+....+ .+++++...--..++...+.....+.....+ .|. ..+...+.+....
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~g--~~vl~fSlEms~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~~~~~~~~~~ 280 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALREG--KSVAIFSLEMSKEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARASGP 280 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHcC--CcEEEEecCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3488999999999999988876543322 4788888877667776665443323222211 121 1111112211110
Q ss_pred cccccCCCCceEEEe-----ehHhHHhhHhhh-hccCccEEEEcccccccC
Q psy13010 138 KNLHTKDASFHVVIT-----SYQLVVSDFKYF-NRIKWQYLILDEAQAIKS 182 (573)
Q Consensus 138 ~~~~~~~~~~~i~i~-----sy~~~~~~~~~l-~~~~~~~vIiDE~h~~kn 182 (573)
. ....+.|- +.+.+......+ ...+.++||||=.|.+.+
T Consensus 281 l------~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~ 325 (444)
T PRK05595 281 L------AAAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSG 325 (444)
T ss_pred H------hcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccC
Confidence 0 11123332 223343333333 235689999999988863
No 438
>PRK11054 helD DNA helicase IV; Provisional
Probab=81.84 E-value=2.9 Score=46.66 Aligned_cols=69 Identities=12% Similarity=0.006 Sum_probs=48.1
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcC-CCCCEEEEcCcccHHHHHH-HHHHHC
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYD-VWGPFLIISPASTLHNWQQ-EMERFV 113 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~-~~~~~LIV~P~~l~~qW~~-el~~~~ 113 (573)
..|.+-|.++|.. ..+..++....|+|||.++++-+.++...+. ....+|+++...-.-+... .|....
T Consensus 195 ~~L~~~Q~~av~~------~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN------GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC------CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 3688999999841 2344566778999999999998888776543 2357899999665555443 355443
No 439
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=81.79 E-value=26 Score=34.26 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=24.4
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
++.-..|.|||.++..++..+...+ +++++|.-
T Consensus 76 ~l~G~~G~GKTTt~akLA~~l~~~g---~~V~li~~ 108 (272)
T TIGR00064 76 LFVGVNGVGKTTTIAKLANKLKKQG---KSVLLAAG 108 (272)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEeC
Confidence 5567999999999988887775542 36676664
No 440
>KOG0730|consensus
Probab=81.79 E-value=5.5 Score=43.07 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=35.2
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHH
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMER 111 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~ 111 (573)
....|.|+.-++|+|||+.|-|+...... .+|-|--+.++..|..|=.+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~------nFlsvkgpEL~sk~vGeSEr 514 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGM------NFLSVKGPELFSKYVGESER 514 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcC------CeeeccCHHHHHHhcCchHH
Confidence 45667799999999999999887776543 44555447777778655433
No 441
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=81.71 E-value=10 Score=38.96 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=35.2
Q ss_pred ccHHHHHHHHHHHHHHHhC---CCCeEEeCCCCCCHHHHHHHHHHHHhhhcC
Q psy13010 40 NLKHYQLKGMNWLANLYDQ---GINGILADEMGLGKTVQSIAFLCHIAETYD 88 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~---~~~~ll~de~G~GKT~~~ia~~~~~~~~~~ 88 (573)
+-++-|...+...+.-... +.+.++.-.+|+|||.++--++..+.....
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~ 71 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA 71 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc
Confidence 5677788877544433322 234689999999999999888888877644
No 442
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=81.66 E-value=8.5 Score=35.19 Aligned_cols=108 Identities=20% Similarity=0.104 Sum_probs=57.9
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhhhccccc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHT 142 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~ 142 (573)
++...|.+|||..-|-.+......+ .+++|..|..- .-+....|.--.|.+
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~g---~~v~vfkp~iD---------~R~~~~~V~Sr~G~~----------------- 58 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEAG---MKVLVFKPAID---------TRYGVGKVSSRIGLS----------------- 58 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHcC---CeEEEEecccc---------cccccceeeeccCCc-----------------
Confidence 6788999999986665555554442 47888888521 111112222222221
Q ss_pred CCCCceEEEeehHhHHhhHhhhhc-cCccEEEEcccccccCcchHHHHHHHhccc--CcEEEEecc
Q psy13010 143 KDASFHVVITSYQLVVSDFKYFNR-IKWQYLILDEAQAIKSSSSMRWKLLLGFSC--RNRLLLSGT 205 (573)
Q Consensus 143 ~~~~~~i~i~sy~~~~~~~~~l~~-~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~--~~~~lLTgT 205 (573)
..-+++-+-..+......... ...+.|.+||+|-+... +-..+..+.. ...+++.|.
T Consensus 59 ---~~A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~~---~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 59 ---SEAVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDEE---LVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred ---ccceecCChHHHHHHHHhcccCCCcCEEEEehhHhCCHH---HHHHHHHHHhhcCCEEEEecc
Confidence 111222222223333333221 22689999999998553 4555666643 456666664
No 443
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=81.48 E-value=11 Score=39.35 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=72.4
Q ss_pred HHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEeec-CC--hhHH
Q psy13010 52 LANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYW-GS--PQER 128 (573)
Q Consensus 52 l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~~-g~--~~~~ 128 (573)
+..-++.+.-.++|.-+|+|||.-|+.++.......+ +|++|..-.---+||...+.....+.....+. |. ..+-
T Consensus 189 ~t~G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~--~~v~iFSLEM~~eql~~R~Ls~~s~v~~~kirtg~l~~~d~ 266 (435)
T COG0305 189 ITSGFRPGDLIIVAARPGMGKTALALNIALNAAADGR--KPVAIFSLEMSEEQLVMRLLSSESGIESSKLRTGRLSDDEW 266 (435)
T ss_pred HhcCCccCCEEEEccCCCCChHHHHHHHHHHHHHhcC--CCeEEEEccCCHHHHHHHhhccccccchhccccccccHHHH
Confidence 3344455556699999999999999999988887544 57888888888889988876654333322221 21 1111
Q ss_pred HHHHHHhhhcccccCCCCceEEE-----eehHhHHhhHhhhh-ccCccEEEEcccccccCcc
Q psy13010 129 KILRQFWDMKNLHTKDASFHVVI-----TSYQLVVSDFKYFN-RIKWQYLILDEAQAIKSSS 184 (573)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~i~i-----~sy~~~~~~~~~l~-~~~~~~vIiDE~h~~kn~~ 184 (573)
..+... ........++| .+...+++....+. ..+-+++++|=-|.+....
T Consensus 267 ~~l~~a------~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~l~~i~iDYLqLm~~~~ 322 (435)
T COG0305 267 ERLIKA------ASELSEAPIFIDDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLMTGGK 322 (435)
T ss_pred HHHHHH------HHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhcCccEEEEEEEEeecccc
Confidence 111111 11112233444 23333333333332 3457889999888875443
No 444
>KOG4692|consensus
Probab=81.41 E-value=0.53 Score=45.92 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=37.9
Q ss_pred cchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccC
Q psy13010 368 GRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNM 410 (573)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~ 410 (573)
.+.+.+.++..|+||.-.+-+.+++||+|..|.+|+-++.++.
T Consensus 414 ~~~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~ 456 (489)
T KOG4692|consen 414 NKDLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC 456 (489)
T ss_pred cCCCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcC
Confidence 4556677999999999999999999999999999999887754
No 445
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=81.26 E-value=3 Score=42.12 Aligned_cols=60 Identities=23% Similarity=0.325 Sum_probs=37.6
Q ss_pred chhhhccHHHHHHHHHHHHHHHhCC----CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcc
Q psy13010 35 GLFRGNLKHYQLKGMNWLANLYDQG----INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS 100 (573)
Q Consensus 35 ~~l~~~L~~~Q~~~v~~l~~~~~~~----~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~ 100 (573)
.++.+|.. .++|...+.++.+.+ .+.||+-++|+|||..|+++...+... -|+..+.-.-
T Consensus 24 ~GlVGQ~~--AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~----~PF~~isgSE 87 (398)
T PF06068_consen 24 DGLVGQEK--AREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGED----VPFVSISGSE 87 (398)
T ss_dssp TTEES-HH--HHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTT----S-EEEEEGGG
T ss_pred ccccChHH--HHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCC----CCeeEcccce
Confidence 35555544 455555556666443 344999999999999999999888754 3666555543
No 446
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=80.80 E-value=5.5 Score=36.61 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.3
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhc
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETY 87 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~ 87 (573)
..+++.-+|.|||..++.-...+...+
T Consensus 7 kIflG~apGVGKTy~ML~ea~~l~~~G 33 (211)
T PF02702_consen 7 KIFLGAAPGVGKTYAMLQEAHRLKEQG 33 (211)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCC
Confidence 458899999999999999888888873
No 447
>PHA02542 41 41 helicase; Provisional
Probab=80.73 E-value=12 Score=39.86 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=34.4
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHH
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEM 109 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el 109 (573)
-.+|+..+|+|||..++.++...... + .++|++.-.--..++...+
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a~~-g--~~Vl~fSLEM~~~ql~~Rl 237 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYLQQ-G--YNVLYISMEMAEEVIAKRI 237 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHHhc-C--CcEEEEeccCCHHHHHHHH
Confidence 45899999999999999888777543 2 4888887655556665555
No 448
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=80.61 E-value=8.4 Score=41.28 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=37.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHH
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERF 112 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~ 112 (573)
.+|.-++|+|||..++-++......+ .++++|.-..-..|-......+
T Consensus 266 ~li~G~~G~GKt~l~~~f~~~~~~~g---e~~~y~s~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 266 ILATGATGTGKTLLVSKFLENACANK---ERAILFAYEESRAQLLRNAYSW 313 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEEeeCCHHHHHHHHHHc
Confidence 48999999999999999888876653 3788888777777766666554
No 449
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=80.39 E-value=26 Score=40.15 Aligned_cols=77 Identities=12% Similarity=0.070 Sum_probs=45.9
Q ss_pred hcccccccc--ccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHH----hCC---CeEEEecCCCCHHHHHHHH
Q psy13010 488 LCHKLTLVY--DAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMV----YRK---YRFMRLDGSSKISERRDMF 558 (573)
Q Consensus 488 ~~~~~~~~~--~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~----~~g---i~~~~i~G~~~~~~R~~~i 558 (573)
....++.+. ..+|.....-.-.-+...|+|++|.-.-+....-..+.|+ ..| +.++ ++|.+|.+++++++
T Consensus 96 rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~l 174 (1187)
T COG1110 96 RGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEAL 174 (1187)
T ss_pred cCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHH
Confidence 333444333 3568775444333333457777665554433333333333 333 3344 89999999999999
Q ss_pred hCcCCCC
Q psy13010 559 AVPGILT 565 (573)
Q Consensus 559 ~~F~~~~ 565 (573)
++|.+++
T Consensus 175 e~i~~gd 181 (1187)
T COG1110 175 ERIESGD 181 (1187)
T ss_pred HHHhcCC
Confidence 9999876
No 450
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=80.28 E-value=1.4 Score=43.78 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=28.8
Q ss_pred ccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCCCCC
Q psy13010 169 WQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNS 210 (573)
Q Consensus 169 ~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~n~ 210 (573)
--+||+||+|+ ....+.-..+..|-...++.+||.+.+-+
T Consensus 244 dAfVIlDEaQN--tT~~QmKMfLTRiGf~skmvItGD~tQiD 283 (348)
T COG1702 244 DAFVILDEAQN--TTVGQMKMFLTRIGFESKMVITGDITQID 283 (348)
T ss_pred CeEEEEecccc--cchhhhceeeeeecCCceEEEEcCccccc
Confidence 35899999998 22334444555667778899999998744
No 451
>KOG1942|consensus
Probab=80.12 E-value=4.2 Score=39.42 Aligned_cols=61 Identities=21% Similarity=0.149 Sum_probs=41.8
Q ss_pred CCCccCCCCchhhhccHHHHHHHHH-HHHHHH-hCCCCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 26 STEVERPQPGLFRGNLKHYQLKGMN-WLANLY-DQGINGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 26 ~~~~~~~~p~~l~~~L~~~Q~~~v~-~l~~~~-~~~~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
.+......+.++-+|...---.++- -|+... ..++..+|+-.+|+|||..|+++...+..+
T Consensus 29 e~g~~~~~~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqELG~k 91 (456)
T KOG1942|consen 29 ETGNAVEVAAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQELGPK 91 (456)
T ss_pred CCCCeeecccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCCC
Confidence 4556667788887776555544441 122222 345566999999999999999988888665
No 452
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=80.07 E-value=4 Score=41.95 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHHHHHHHh--CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHH
Q psy13010 40 NLKHYQLKGMNWLANLYD--QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLH 103 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~--~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~ 103 (573)
+|-+-|+.++.++++.+. .+...++.-.-|+|||...-+++..+... ...+++++|..+.-
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~---~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR---GKKVLVTAPTGIAA 63 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc---cceEEEecchHHHH
Confidence 366789999988877664 44455888999999999887777776553 24788899976544
No 453
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=79.93 E-value=5.4 Score=38.72 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=64.1
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHH-HHHHHHHHCCCceEE-eecCC--hhHHHHHH
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHN-WQQEMERFVPDFKVV-PYWGS--PQERKILR 132 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~q-W~~el~~~~~~~~v~-~~~g~--~~~~~~~~ 132 (573)
..+.-.+|+-.+|.|||.-++.++.......+ .++++++...-.++ +.+-+.... +...- +..|. ..+...+.
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~--~~vly~SlEm~~~~l~~R~la~~s-~v~~~~i~~g~l~~~e~~~~~ 93 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGG--YPVLYFSLEMSEEELAARLLARLS-GVPYNKIRSGDLSDEEFERLQ 93 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTS--SEEEEEESSS-HHHHHHHHHHHHH-TSTHHHHHCCGCHHHHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHhh-cchhhhhhccccCHHHHHHHH
Confidence 34444599999999999999999988887643 48999998655555 334443332 21111 11121 12222222
Q ss_pred HHhhhcccccCCCCceEEEe-----ehHhHHhhHhhhhc--cCccEEEEcccccccCc
Q psy13010 133 QFWDMKNLHTKDASFHVVIT-----SYQLVVSDFKYFNR--IKWQYLILDEAQAIKSS 183 (573)
Q Consensus 133 ~~~~~~~~~~~~~~~~i~i~-----sy~~~~~~~~~l~~--~~~~~vIiDE~h~~kn~ 183 (573)
...... ....+++. +.+.+......+.. .+.++||||=.|.+...
T Consensus 94 ~~~~~l------~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 94 AAAEKL------SDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHH------HTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHH------hhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCC
Confidence 111111 12224443 23333333333333 57789999999998763
No 454
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=79.89 E-value=9.3 Score=28.66 Aligned_cols=55 Identities=11% Similarity=0.100 Sum_probs=40.8
Q ss_pred eEEEEe-cchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 517 RVLVYS-QMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 517 KvlIFs-q~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
||.||+ .+...=..+...|+.+|++|..++-....+.+++..+.......+.+++
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 466777 5677778888999999999999988888777777776666542444443
No 455
>KOG0734|consensus
Probab=79.88 E-value=12 Score=39.64 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=37.3
Q ss_pred hhccCccEEEEccccccc---CcchHH------HHHHHhc----ccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCC
Q psy13010 164 FNRIKWQYLILDEAQAIK---SSSSMR------WKLLLGF----SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFD 227 (573)
Q Consensus 164 l~~~~~~~vIiDE~h~~k---n~~s~~------~~~~~~l----~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~ 227 (573)
-...-+..|+|||...+. |+..+. .+.+-.+ +..-++.+-||-++..++. .++.|+.|.
T Consensus 392 Ak~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~-----AL~RPGRFD 463 (752)
T KOG0734|consen 392 AKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK-----ALTRPGRFD 463 (752)
T ss_pred HHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH-----HhcCCCccc
Confidence 334568899999998884 333221 1222222 4667899999987766554 245788763
No 456
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=79.55 E-value=6.3 Score=40.60 Aligned_cols=104 Identities=10% Similarity=0.118 Sum_probs=59.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEeecC-ChhHHHHHHHHhhhccc
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWG-SPQERKILRQFWDMKNL 140 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~~g-~~~~~~~~~~~~~~~~~ 140 (573)
.+++-=.|+|||.++.-+..++... + ..+|+|+-..-.+-=.++|+.......|-+|.. ...+.-
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk~-~--~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv----------- 168 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKKK-G--KKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPV----------- 168 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHHc-C--CceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHH-----------
Confidence 3566678999999998888888773 2 355777665444444455544432233333332 111111
Q ss_pred ccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhc
Q psy13010 141 HTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF 194 (573)
Q Consensus 141 ~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l 194 (573)
+..+.-...+....+|+||+|-+-|... +......+..+
T Consensus 169 --------------~Iak~al~~ak~~~~DvvIvDTAGRl~i-de~Lm~El~~I 207 (451)
T COG0541 169 --------------EIAKAALEKAKEEGYDVVIVDTAGRLHI-DEELMDELKEI 207 (451)
T ss_pred --------------HHHHHHHHHHHHcCCCEEEEeCCCcccc-cHHHHHHHHHH
Confidence 1233445666667889999999977644 33344444444
No 457
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.11 E-value=9.9 Score=40.94 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=57.3
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhC-CCeEEEecCCCCHHHHHHHHhCcCCC
Q psy13010 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYR-KYRFMRLDGSSKISERRDMFAVPGIL 564 (573)
Q Consensus 496 ~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~-gi~~~~i~G~~~~~~R~~~i~~F~~~ 564 (573)
..|+|......++...+..|.++||.+.......-+.+.|+.. |..+..++|+++.++|.++..+-.++
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g 75 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG 75 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC
Confidence 3589999999999888888999999999988887777777754 78889999999999998876655444
No 458
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=78.93 E-value=57 Score=34.18 Aligned_cols=33 Identities=12% Similarity=0.060 Sum_probs=24.2
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
.+.-..|.|||.++..+...+...+ .++++|+-
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~~G---~kV~lV~~ 136 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQRKG---FKPCLVCA 136 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEcC
Confidence 6677899999999988877765442 25666665
No 459
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=78.92 E-value=25 Score=35.26 Aligned_cols=42 Identities=17% Similarity=0.292 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCCC---CeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 45 QLKGMNWLANLYDQGI---NGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~---~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|..++..+.+....+. .-|+.-+.|.||+..|.+++..+...
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~ 53 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQ 53 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 5566666666666554 23889999999999999999998865
No 460
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=78.68 E-value=4.5 Score=39.21 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=18.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
.++.-.+|+|||..|--+...+..
T Consensus 55 vLl~GPPGlGKTTLA~IIA~Emgv 78 (332)
T COG2255 55 VLLFGPPGLGKTTLAHIIANELGV 78 (332)
T ss_pred EEeeCCCCCcHHHHHHHHHHHhcC
Confidence 489999999999877555555543
No 461
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=78.53 E-value=17 Score=32.84 Aligned_cols=130 Identities=14% Similarity=0.085 Sum_probs=67.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceEEeecCCh---------hHHHHH
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKVVPYWGSP---------QERKIL 131 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v~~~~g~~---------~~~~~~ 131 (573)
..+.-..|=|||..|++......-.+ .+++||-= +.-...=...+.+..|+..+..+.... ..+...
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAaG~G---~rV~iiQFlKg~~~~GE~~~l~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~ 100 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIAGQG---TPVLIVQFLKGGIQQGPDRPIQLGQNLDWVRCDLPRCLDTPHLDESEKKAL 100 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHhcCC---CEEEEEEEecCCCcchHHHHHHhCCCcEEEECCCCCeeeCCCcCHHHHHHH
Confidence 46777899999999988777666543 36666521 221111112223334444444332110 000000
Q ss_pred HHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcc----hHHHHHHHhcccCcEEEEeccCC
Q psy13010 132 RQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSS----SMRWKLLLGFSCRNRLLLSGTPI 207 (573)
Q Consensus 132 ~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~----s~~~~~~~~l~~~~~~lLTgTP~ 207 (573)
. ..+..-...+....|++||+||.-..-+.. ......+..-...--++|||--.
T Consensus 101 ~----------------------~~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~ 158 (178)
T PRK07414 101 Q----------------------ELWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEM 158 (178)
T ss_pred H----------------------HHHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCC
Confidence 0 011111234556789999999997654422 33334444334445799999855
Q ss_pred CCCHHHHHH
Q psy13010 208 QNSMAELWA 216 (573)
Q Consensus 208 ~n~~~el~~ 216 (573)
+..+.++..
T Consensus 159 p~~Lie~AD 167 (178)
T PRK07414 159 PESLLAIAD 167 (178)
T ss_pred CHHHHHhCC
Confidence 544444433
No 462
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=78.46 E-value=0.3 Score=32.85 Aligned_cols=29 Identities=21% Similarity=0.138 Sum_probs=22.1
Q ss_pred CCCCCCC---CCCCCcccCCCCCCCCcccccc
Q psy13010 378 ILPEFPH---VPRDPVILPQQPTYLPVCFFES 406 (573)
Q Consensus 378 ~~~~~~~---~~~~~~~~~c~h~~~~~c~~~~ 406 (573)
.|++|.+ ..+....++|+|.||.+|+.+-
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~ 33 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEW 33 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHH
Confidence 4667775 3467778999999999997644
No 463
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=78.24 E-value=6.6 Score=40.54 Aligned_cols=64 Identities=11% Similarity=-0.025 Sum_probs=43.7
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcc--------cHHHHHHHHHHHCCCceEEeecCC
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS--------TLHNWQQEMERFVPDFKVVPYWGS 124 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~--------l~~qW~~el~~~~~~~~v~~~~g~ 124 (573)
.+..+|.-++|+|||..+-|+.+.....++. -.++-+.... +...=.++|++.+ +..++++.+.
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~-a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDi 184 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPN-ARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDI 184 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCC-ceEEeccHHHHHHHHHHHHHhhhHHHHHHhh-ccCeeeechH
Confidence 4566999999999999999999988887432 1234343322 2233456777777 8888877754
No 464
>PRK04132 replication factor C small subunit; Provisional
Probab=78.10 E-value=9.9 Score=43.26 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=32.6
Q ss_pred CccEEEEcccccccCcchHHHHHHHhc---ccCcEEEEeccCCCCCHHHHHHHHHhh
Q psy13010 168 KWQYLILDEAQAIKSSSSMRWKLLLGF---SCRNRLLLSGTPIQNSMAELWALLHFI 221 (573)
Q Consensus 168 ~~~~vIiDE~h~~kn~~s~~~~~~~~l---~~~~~~lLTgTP~~n~~~el~~ll~~L 221 (573)
++.++|+||+|.+.. +++...++.+ ....+++|+.++...-...+.+-...+
T Consensus 630 ~~KVvIIDEaD~Lt~--~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i 684 (846)
T PRK04132 630 SFKIIFLDEADALTQ--DAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 684 (846)
T ss_pred CCEEEEEECcccCCH--HHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEE
Confidence 578999999999953 2233333333 356678888777665555555544444
No 465
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=77.39 E-value=5 Score=40.15 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=40.1
Q ss_pred ccCCCCchhhhccHHHHHHHH-HHHHHHH-hCCCCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 29 VERPQPGLFRGNLKHYQLKGM-NWLANLY-DQGINGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 29 ~~~~~p~~l~~~L~~~Q~~~v-~~l~~~~-~~~~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
..-..+.++.+|..----.++ --|+..- ..+.+.|++-++|+|||..|+++...+...
T Consensus 33 ~~k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~d 92 (450)
T COG1224 33 KAKFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGED 92 (450)
T ss_pred CEeEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 344567777777766655555 2233333 234455999999999999999999988765
No 466
>KOG0652|consensus
Probab=77.10 E-value=4 Score=38.84 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=28.4
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHH
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNW 105 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW 105 (573)
+.+.|.++.-.+|+|||++|-|..+... .++|=++-+.++..+
T Consensus 203 ~pPKGvLmYGPPGTGKTlmARAcAaqT~------aTFLKLAgPQLVQMf 245 (424)
T KOG0652|consen 203 RPPKGVLMYGPPGTGKTLMARACAAQTN------ATFLKLAGPQLVQMF 245 (424)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHHhcc------chHHHhcchHHHhhh
Confidence 4566789999999999999866555332 244555555544443
No 467
>PRK10490 sensor protein KdpD; Provisional
Probab=77.09 E-value=25 Score=41.00 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=23.7
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhc
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETY 87 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~ 87 (573)
..+++.-+|.|||..++.-...+...+
T Consensus 26 ~i~~g~~~gvgkt~~ml~~a~~~~~~g 52 (895)
T PRK10490 26 KIFFGACAGVGKTYAMLQEAQRLRAQG 52 (895)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHhCC
Confidence 459999999999999999888888874
No 468
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=76.60 E-value=8.4 Score=38.61 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=22.9
Q ss_pred EeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEE-cCc
Q psy13010 64 LADEMGLGKTVQSIAFLCHIAETYDVWGPFLII-SPA 99 (573)
Q Consensus 64 l~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV-~P~ 99 (573)
+.--=|.|||.+|+|+...+...+ .+ +|+| +.+
T Consensus 7 f~GKGGVGKTT~aaA~A~~lA~~g--~k-vLlvStDP 40 (322)
T COG0003 7 FTGKGGVGKTTIAAATAVKLAESG--KK-VLLVSTDP 40 (322)
T ss_pred EecCCcccHHHHHHHHHHHHHHcC--Cc-EEEEEeCC
Confidence 334458899999999888888875 24 4554 443
No 469
>PRK07773 replicative DNA helicase; Validated
Probab=76.56 E-value=12 Score=43.45 Aligned_cols=49 Identities=18% Similarity=0.075 Sum_probs=36.9
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHH
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMER 111 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~ 111 (573)
-.+|+-.+|+|||..++.++.......+ .+++++.-..-..|....+..
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~--~~V~~fSlEms~~ql~~R~~s 267 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHR--LAVAIFSLEMSKEQLVMRLLS 267 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcC--CeEEEEecCCCHHHHHHHHHH
Confidence 3599999999999999999887765432 488888876666666555544
No 470
>PRK05973 replicative DNA helicase; Provisional
Probab=76.51 E-value=6.3 Score=37.61 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=32.1
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHH
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEM 109 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el 109 (573)
-.+|+-.+|+|||..++-++......+ .+++++.-..--.+=.+.+
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~G---e~vlyfSlEes~~~i~~R~ 111 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSG---RTGVFFTLEYTEQDVRDRL 111 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEEEEeCCHHHHHHHH
Confidence 448999999999999998888776542 4778887543333333333
No 471
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=76.35 E-value=23 Score=35.80 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=28.3
Q ss_pred HhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHH
Q psy13010 56 YDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNW 105 (573)
Q Consensus 56 ~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW 105 (573)
...+...+|.-|.|+||+..|-++-. .... ..+|++.|--..+-+.|
T Consensus 19 a~~~~pVLI~GE~GtGK~~lAr~iH~-~s~r--~~~pfv~vnc~~~~~~~ 65 (329)
T TIGR02974 19 APLDRPVLIIGERGTGKELIAARLHY-LSKR--WQGPLVKLNCAALSENL 65 (329)
T ss_pred hCCCCCEEEECCCCChHHHHHHHHHH-hcCc--cCCCeEEEeCCCCChHH
Confidence 34566789999999999997744333 2221 23576655434333444
No 472
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=76.35 E-value=6.5 Score=39.48 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=74.7
Q ss_pred cHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEe
Q psy13010 41 LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVP 120 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~ 120 (573)
+.+.|.+ +|..+...+.+.+++-.+|+|||...-+++..+....+. .++++|=.. .|+. .+....+.
T Consensus 129 ~~~~~~~---~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~-~rivtiEd~-------~El~--~~~~n~v~ 195 (323)
T PRK13833 129 MTEAQAS---VIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPE-DRLVILEDT-------AEIQ--CAAENAVA 195 (323)
T ss_pred CCHHHHH---HHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCC-ceEEEecCC-------cccc--cCCCCEEE
Confidence 4455544 445556667778999999999999988888877543222 243333211 1111 11111211
Q ss_pred ecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcccCcEE
Q psy13010 121 YWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRL 200 (573)
Q Consensus 121 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~ 200 (573)
+... . ..++ ......-...+++++|+.|.- .. ..+.+++.+...+.-
T Consensus 196 l~~~--------------------~-----~~~~---~~lv~~aLR~~PD~IivGEiR---g~--ea~~~l~a~~tGh~G 242 (323)
T PRK13833 196 LHTS--------------------D-----TVDM---ARLLKSTMRLRPDRIIVGEVR---DG--AALTLLKAWNTGHPG 242 (323)
T ss_pred eccC--------------------C-----CcCH---HHHHHHHhCCCCCEEEEeecC---CH--HHHHHHHHHcCCCCc
Confidence 1110 0 0122 222334445799999999984 22 244566666655542
Q ss_pred EEeccCCCCCHHHHHHHHHhh
Q psy13010 201 LLSGTPIQNSMAELWALLHFI 221 (573)
Q Consensus 201 lLTgTP~~n~~~el~~ll~~L 221 (573)
.+ +|-+.|++.+.+.-+.-+
T Consensus 243 ~i-tTiHA~s~~~a~~Rl~~l 262 (323)
T PRK13833 243 GV-TTIHSNTAMSALRRLEQL 262 (323)
T ss_pred eE-EEECCCCHHHHHHHHHHH
Confidence 23 688889988877666543
No 473
>KOG0349|consensus
Probab=75.87 E-value=5.4 Score=40.61 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=46.0
Q ss_pred CCeEEEEecchhHHHHHHHHHHhC---CCeEEEecCCCCHHHHHHHHhCcCCCC
Q psy13010 515 GHRVLVYSQMTKMIDLLEEFMVYR---KYRFMRLDGSSKISERRDMFAVPGILT 565 (573)
Q Consensus 515 ~~KvlIFsq~~~~l~~l~~~L~~~---gi~~~~i~G~~~~~~R~~~i~~F~~~~ 565 (573)
-+|.||||.-..--|-|++++.++ -+.++.++|...+.+|.+.++.|...+
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~d 558 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFD 558 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcC
Confidence 579999999988899999999986 467888999999999999999999776
No 474
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=75.85 E-value=14 Score=29.12 Aligned_cols=55 Identities=7% Similarity=-0.024 Sum_probs=39.2
Q ss_pred CCeEEEEec------chhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEE
Q psy13010 515 GHRVLVYSQ------MTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVG 570 (573)
Q Consensus 515 ~~KvlIFsq------~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~ 570 (573)
+.+|+||+. +...=..+.+.|+..|++|..++=....+-|+.+.+. ....++.++
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~-~g~~tvP~v 67 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEY-SNWPTFPQL 67 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHH-hCCCCCCEE
Confidence 469999987 7788889999999999999998865555555554443 333344433
No 475
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=75.46 E-value=11 Score=34.86 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=19.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
.+++-.+|+|||.+..+++..+..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 478889999999998887777654
No 476
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=75.23 E-value=26 Score=32.57 Aligned_cols=44 Identities=14% Similarity=0.099 Sum_probs=30.7
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHH
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEM 109 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el 109 (573)
.|.-++|+|||..++.++......+ .+++.|.-.........++
T Consensus 16 ~i~G~~GsGKT~l~~~~~~~~~~~g---~~v~yi~~e~~~~~rl~~~ 59 (209)
T TIGR02237 16 QIYGPPGSGKTNICMILAVNAARQG---KKVVYIDTEGLSPERFKQI 59 (209)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECCCCCHHHHHHH
Confidence 7888999999999988887766542 4677777654333333444
No 477
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=75.15 E-value=25 Score=39.58 Aligned_cols=151 Identities=9% Similarity=0.057 Sum_probs=76.6
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcc----cHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhhhc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS----TLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMK 138 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~----l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 138 (573)
.|.-..|.|||.++.-++..+....+. +.+.+|+-.. .++||+.-.... +..+.+.
T Consensus 189 ~lVGpnGvGKTTTiaKLA~~~~~~~G~-kkV~lit~Dt~RigA~eQL~~~a~~~--gvpv~~~----------------- 248 (767)
T PRK14723 189 ALVGPTGVGKTTTTAKLAARCVAREGA-DQLALLTTDSFRIGALEQLRIYGRIL--GVPVHAV----------------- 248 (767)
T ss_pred EEECCCCCcHHHHHHHHHhhHHHHcCC-CeEEEecCcccchHHHHHHHHHHHhC--CCCcccc-----------------
Confidence 677899999999886666655333221 2555555432 345554322221 1122111
Q ss_pred ccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcc-----cCcEEEEeccCCCCCHHH
Q psy13010 139 NLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFS-----CRNRLLLSGTPIQNSMAE 213 (573)
Q Consensus 139 ~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~-----~~~~~lLTgTP~~n~~~e 213 (573)
.+.+.+..-...+. .+++|+||-+-+.-+. ......+..+. ....+.|++|.-...+.+
T Consensus 249 -------------~~~~~l~~al~~~~--~~D~VLIDTAGRs~~d-~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~ 312 (767)
T PRK14723 249 -------------KDAADLRFALAALG--DKHLVLIDTVGMSQRD-RNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNE 312 (767)
T ss_pred -------------CCHHHHHHHHHHhc--CCCEEEEeCCCCCccC-HHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHH
Confidence 12222222223333 4589999998765432 22334444432 335677888865555555
Q ss_pred HHHHHHhh---CCC-----------CCCChHHHHHHHhhhhhhhhccccc
Q psy13010 214 LWALLHFI---MPS-----------MFDSHDEFNEWFSKDIESHAENKTS 249 (573)
Q Consensus 214 l~~ll~~L---~~~-----------~~~~~~~f~~~~~~~~~~~~~~~~~ 249 (573)
+...++.. ... .++..-.+......|+.........
T Consensus 313 i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~~~lPI~yit~GQ~V 362 (767)
T PRK14723 313 VVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIRHRLPVHYVSTGQKV 362 (767)
T ss_pred HHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHHHHCCCeEEEecCCCC
Confidence 55545432 111 1234455566666677665544444
No 478
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=75.05 E-value=6.7 Score=37.19 Aligned_cols=42 Identities=33% Similarity=0.483 Sum_probs=26.7
Q ss_pred CccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCCCCCHH
Q psy13010 168 KWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMA 212 (573)
Q Consensus 168 ~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~n~~~ 212 (573)
..+.+|+||++.+-.- ....+..+.....+.+-|=|.|-.+.
T Consensus 62 ~~~~liiDE~~~~~~g---~l~~l~~~~~~~~~~l~GDp~Q~~~~ 103 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPG---YLLLLLSLSPAKNVILFGDPLQIPYI 103 (234)
T ss_pred cCCEEEEeccccCChH---HHHHHHhhccCcceEEEECchhccCC
Confidence 5899999999987432 22234444444467777888875533
No 479
>KOG0780|consensus
Probab=74.98 E-value=6.2 Score=39.86 Aligned_cols=48 Identities=8% Similarity=0.059 Sum_probs=29.3
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFV 113 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~ 113 (573)
++.-=.|.|||.++.-+..++..++- .+.+||-..-..--.++++.+.
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kkkG~---K~~LvcaDTFRagAfDQLkqnA 152 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKKKGY---KVALVCADTFRAGAFDQLKQNA 152 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHhcCC---ceeEEeecccccchHHHHHHHh
Confidence 55556899999988777777766532 4466666443333334444443
No 480
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=74.97 E-value=13 Score=41.46 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=24.8
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcc
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS 100 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~ 100 (573)
..+.+|.-++|+|||..+-+++.... -|++.+.+..
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~------~~f~~is~~~ 220 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAK------VPFFTISGSD 220 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcC------CCEEEEehHH
Confidence 34678999999999998877755432 2555554443
No 481
>PRK13764 ATPase; Provisional
Probab=74.93 E-value=37 Score=37.22 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=23.9
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
....+.+++-.+|+|||..+-+++..+..
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34566799999999999999888888764
No 482
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=74.87 E-value=27 Score=39.01 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=23.5
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhc
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETY 87 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~ 87 (573)
..+++..+|.|||+.++.-...+...+
T Consensus 24 kIf~G~apGVGKTyaML~~a~~~~~~G 50 (890)
T COG2205 24 KIFLGAAPGVGKTYAMLSEAQRLLAEG 50 (890)
T ss_pred EEEeecCCCccHHHHHHHHHHHHHHcC
Confidence 458999999999999998888888774
No 483
>KOG0732|consensus
Probab=74.50 E-value=6.3 Score=45.30 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=34.2
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC--cccHHHHHHHHHH
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP--ASTLHNWQQEMER 111 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P--~~l~~qW~~el~~ 111 (573)
...+|.++...+|+|||++|-+++..+..... .+..-.- ..++..|..|..+
T Consensus 297 tpPrgvL~~GppGTGkTl~araLa~~~s~~~~---kisffmrkgaD~lskwvgEaER 350 (1080)
T KOG0732|consen 297 TPPRGVLFHGPPGTGKTLMARALAAACSRGNR---KISFFMRKGADCLSKWVGEAER 350 (1080)
T ss_pred CCCcceeecCCCCCchhHHHHhhhhhhccccc---ccchhhhcCchhhccccCcHHH
Confidence 34667799999999999999998888876532 3332222 3344456555544
No 484
>KOG2177|consensus
Probab=74.47 E-value=0.8 Score=45.98 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=35.0
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCCccccccc-ccCCchhhh
Q psy13010 374 EEGTILPEFPHVPRDPVILPQQPTYLPVCFFEST-QNMVSPALK 416 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~-~~~~~~~~~ 416 (573)
.+...|++|.+....|.+++|+|.||..|+.... ....||.|+
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccC
Confidence 4668999999999999999999999999976544 345566666
No 485
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=74.42 E-value=18 Score=37.51 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=28.5
Q ss_pred HhhhhccC-ccEEEEcccccccCcchHHHHHHHhcc---cCcEEEEeccCCC
Q psy13010 161 FKYFNRIK-WQYLILDEAQAIKSSSSMRWKLLLGFS---CRNRLLLSGTPIQ 208 (573)
Q Consensus 161 ~~~l~~~~-~~~vIiDE~h~~kn~~s~~~~~~~~l~---~~~~~lLTgTP~~ 208 (573)
...+.+.. .+.+++||+..+.. ......+..++ +..++++|.||-.
T Consensus 93 ~~~ik~~~~~~~~~idEa~~~~~--~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 93 PNKLKSGAGIAIIWFEEASQLTF--EDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred hhHhhCcceeeeehhhhhhhcCH--HHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 34444433 59999999999843 23333344443 2235999999965
No 486
>KOG1133|consensus
Probab=74.24 E-value=6.2 Score=42.82 Aligned_cols=42 Identities=26% Similarity=0.297 Sum_probs=37.2
Q ss_pred hhhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHH
Q psy13010 37 FRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIA 78 (573)
Q Consensus 37 l~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia 78 (573)
+.-++++-|+.-++-+++.+..|.-||+-.++|+|||++.|-
T Consensus 12 fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiC 53 (821)
T KOG1133|consen 12 FPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLIC 53 (821)
T ss_pred CCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHH
Confidence 455789999999999999999999999999999999998753
No 487
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=74.19 E-value=1.1 Score=29.60 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCCcccC-CCCCCCCccccccc
Q psy13010 378 ILPEFPHVPRDPVILP-QQPTYLPVCFFEST 407 (573)
Q Consensus 378 ~~~~~~~~~~~~~~~~-c~h~~~~~c~~~~~ 407 (573)
.|++|.+...++..+. |+|.||..|+....
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~ 31 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWL 31 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHH
Confidence 3678887765555555 99999999976443
No 488
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=74.10 E-value=7.2 Score=33.51 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=23.8
Q ss_pred HHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 54 NLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 54 ~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
..+..+.-.+|.-++|+|||..+-+++..+..
T Consensus 17 ~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 17 KPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 33445555678899999999988888777643
No 489
>KOG0297|consensus
Probab=74.00 E-value=2 Score=44.42 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=41.5
Q ss_pred cccCCCCCCCCCCCCCccc-CCCCCCCCccccccccc-CCchhhhhhhhHhhhh
Q psy13010 374 EEGTILPEFPHVPRDPVIL-PQQPTYLPVCFFESTQN-MVSPALKKKIKIEDLI 425 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~-~c~h~~~~~c~~~~~~~-~~~~~~~~~~~~~~~~ 425 (573)
.++..|++|.....+|..+ .|+|.||..|+...... ..||.++.....+...
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 4568999999999999995 99999999998877554 7888886666544443
No 490
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=73.93 E-value=17 Score=35.79 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=24.7
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
+|.-..|.|||.++..++..+....+. .++.+|.-
T Consensus 198 ~~vGptGvGKTTt~~kLa~~~~~~~g~-~~V~li~~ 232 (282)
T TIGR03499 198 ALVGPTGVGKTTTLAKLAARFVLEHGN-KKVALITT 232 (282)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHcCC-CeEEEEEC
Confidence 567789999999998888877654111 25566654
No 491
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=73.88 E-value=35 Score=32.45 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=29.2
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc--CcccHHHHHHH
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS--PASTLHNWQQE 108 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~--P~~l~~qW~~e 108 (573)
+.+.-=|.|||.+++.+...+...+ .+++||= |..-+..|.+.
T Consensus 6 v~n~KGGvGKTT~a~nLA~~la~~G---~~VlliD~DpQ~s~~~w~~~ 50 (231)
T PRK13849 6 FCSFKGGAGKTTALMGLCAALASDG---KRVALFEADENRPLTRWKEN 50 (231)
T ss_pred EECCCCCccHHHHHHHHHHHHHhCC---CcEEEEeCCCCCCHHHHHHh
Confidence 3444558999999999988888763 2555552 45556678653
No 492
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=73.82 E-value=7.1 Score=39.45 Aligned_cols=130 Identities=15% Similarity=0.066 Sum_probs=71.1
Q ss_pred HHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHH-HCCCceEEeecCChhH
Q psy13010 49 MNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMER-FVPDFKVVPYWGSPQE 127 (573)
Q Consensus 49 v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~-~~~~~~v~~~~g~~~~ 127 (573)
..||..+...+.+.+++-.+|+|||...-+++..+... .++++| -. ..|+.- ..|+...+.......
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~ip~~----~ri~ti-Ed------~~El~l~~~~n~~~~~~~~~~~- 217 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREIPAI----ERLITV-ED------AREIVLSNHPNRVHLLASKGGQ- 217 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhCCCC----CeEEEe-cC------CCccccccCCCEEEEEecCCCC-
Confidence 45666667778889999999999998887777766442 344333 11 111210 112211111110000
Q ss_pred HHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCC
Q psy13010 128 RKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207 (573)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~ 207 (573)
+. ...++ ..........++|++|+.|..- ...+..++.+...+.=. -+|-+
T Consensus 218 -----------------~~---~~~~~---~~ll~~~LR~~PD~IivGEiR~-----~ea~~~l~a~~tGh~G~-~tTiH 268 (332)
T PRK13900 218 -----------------GR---AKVTT---QDLIEACLRLRPDRIIVGELRG-----AEAFSFLRAINTGHPGS-ISTLH 268 (332)
T ss_pred -----------------Cc---CcCcH---HHHHHHHhccCCCeEEEEecCC-----HHHHHHHHHHHcCCCcE-EEEEe
Confidence 00 01122 2233445567899999999963 22455666665555311 25778
Q ss_pred CCCHHHHHHHHH
Q psy13010 208 QNSMAELWALLH 219 (573)
Q Consensus 208 ~n~~~el~~ll~ 219 (573)
.++..+...-+.
T Consensus 269 a~s~~~ai~Rl~ 280 (332)
T PRK13900 269 ADSPAMAIEQLK 280 (332)
T ss_pred cCCHHHHHHHHH
Confidence 888777665554
No 493
>KOG0923|consensus
Probab=73.33 E-value=7.3 Score=42.07 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=29.1
Q ss_pred cCccEEEEcccccccCcchHHHHHHHhc---ccC-cEEEEeccCCCCCHHHHHHH
Q psy13010 167 IKWQYLILDEAQAIKSSSSMRWKLLLGF---SCR-NRLLLSGTPIQNSMAELWAL 217 (573)
Q Consensus 167 ~~~~~vIiDE~h~~kn~~s~~~~~~~~l---~~~-~~~lLTgTP~~n~~~el~~l 217 (573)
..+.+||+||+|.=.-..--.+-.++.+ +.. +.++.|||--...+++++.-
T Consensus 377 asYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT~DAekFS~fFDd 431 (902)
T KOG0923|consen 377 ASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATMDAEKFSAFFDD 431 (902)
T ss_pred cceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccccCHHHHHHhccC
Confidence 4678999999997432222223333333 444 45667788665555555443
No 494
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=73.31 E-value=20 Score=35.04 Aligned_cols=104 Identities=21% Similarity=0.173 Sum_probs=54.5
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhhhccccc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHT 142 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~ 142 (573)
+|+--+|+|||..|-.+...+... + ..+.||.-..+.-++ + . |..+..++.. +.
T Consensus 5 il~G~P~SGKTt~a~~L~~~~~~~-~--~~v~~i~~~~~~~~~---------~-~---y~~~~~Ek~~-R~--------- 58 (270)
T PF08433_consen 5 ILCGLPCSGKTTRAKELKKYLEEK-G--KEVVIISDDSLGIDR---------N-D---YADSKKEKEA-RG--------- 58 (270)
T ss_dssp EEE--TTSSHHHHHHHHHHHHHHT-T----EEEE-THHHH-TT---------S-S---S--GGGHHHH-HH---------
T ss_pred EEEcCCCCcHHHHHHHHHHHHHhc-C--CEEEEEcccccccch---------h-h---hhchhhhHHH-HH---------
Confidence 667789999998887777766553 1 355555433332011 1 1 3333333221 11
Q ss_pred CCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccC
Q psy13010 143 KDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTP 206 (573)
Q Consensus 143 ~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP 206 (573)
.+.+.......- -.+||+|--..+|+..-..+...+.....+.++-..+|
T Consensus 59 -------------~l~s~v~r~ls~-~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~ 108 (270)
T PF08433_consen 59 -------------SLKSAVERALSK-DTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCP 108 (270)
T ss_dssp -------------HHHHHHHHHHTT--SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--
T ss_pred -------------HHHHHHHHhhcc-CeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 122222222222 27999999999999999999999999999988888888
No 495
>PRK10824 glutaredoxin-4; Provisional
Probab=73.29 E-value=21 Score=29.82 Aligned_cols=62 Identities=13% Similarity=0.030 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCeEEEEec------chhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCce
Q psy13010 505 DDLLKRLKASGHRVLVYSQ------MTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQS 568 (573)
Q Consensus 505 ~~li~~~~~~~~KvlIFsq------~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 568 (573)
.+.|+++.+ ..+|+||+- |..+=....+.|...|++|..++=....+.|. .+.++...+++.
T Consensus 5 ~~~v~~~I~-~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~-~l~~~sg~~TVP 72 (115)
T PRK10824 5 IEKIQRQIA-ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRA-ELPKYANWPTFP 72 (115)
T ss_pred HHHHHHHHh-cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHH-HHHHHhCCCCCC
Confidence 344555443 469999997 77888899999999998887766554555455 455555444443
No 496
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=72.67 E-value=26 Score=35.12 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=30.6
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHH
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHN 104 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~q 104 (573)
-..|+-++|+|||..++-++......+ +++++|-..+...+
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~~g---~~v~yId~E~~~~~ 97 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKAG---GTAAFIDAEHALDP 97 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEcccchhHH
Confidence 347888999999999998888776653 57777776555544
No 497
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=72.45 E-value=2.8 Score=37.94 Aligned_cols=35 Identities=34% Similarity=0.303 Sum_probs=22.1
Q ss_pred CccEEEEcccccccCcchHHHHHHHh-cccCcEEEEeccCCC
Q psy13010 168 KWQYLILDEAQAIKSSSSMRWKLLLG-FSCRNRLLLSGTPIQ 208 (573)
Q Consensus 168 ~~~~vIiDE~h~~kn~~s~~~~~~~~-l~~~~~~lLTgTP~~ 208 (573)
..|++|||||-.+--+ .+.. ++...++++|.|-..
T Consensus 90 ~~DlliVDEAAaIp~p------~L~~ll~~~~~vv~stTi~G 125 (177)
T PF05127_consen 90 QADLLIVDEAAAIPLP------LLKQLLRRFPRVVFSTTIHG 125 (177)
T ss_dssp --SCEEECTGGGS-HH------HHHHHHCCSSEEEEEEEBSS
T ss_pred CCCEEEEechhcCCHH------HHHHHHhhCCEEEEEeeccc
Confidence 4699999999876322 2333 356678888888443
No 498
>PHA02518 ParA-like protein; Provisional
Probab=72.40 E-value=31 Score=31.88 Aligned_cols=42 Identities=19% Similarity=0.423 Sum_probs=28.6
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEE--cCcccHHHHHH
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII--SPASTLHNWQQ 107 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV--~P~~l~~qW~~ 107 (573)
+.+.-=|.|||..++.+...+...+ .++|+| -|..-+..|..
T Consensus 5 v~~~KGGvGKTT~a~~la~~la~~g---~~vlliD~D~q~~~~~~~~ 48 (211)
T PHA02518 5 VLNQKGGAGKTTVATNLASWLHADG---HKVLLVDLDPQGSSTDWAE 48 (211)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHhCC---CeEEEEeCCCCCChHHHHH
Confidence 3444568999999998888877653 355655 35656667854
No 499
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=72.18 E-value=20 Score=32.27 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=30.6
Q ss_pred HHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHH
Q psy13010 52 LANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNW 105 (573)
Q Consensus 52 l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW 105 (573)
+..........+|.-|.|+||++.|=++-... ....+|++.|--..+-.++
T Consensus 15 ~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s---~r~~~pfi~vnc~~~~~~~ 65 (168)
T PF00158_consen 15 AKRAASSDLPVLITGETGTGKELLARAIHNNS---PRKNGPFISVNCAALPEEL 65 (168)
T ss_dssp HHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS---TTTTS-EEEEETTTS-HHH
T ss_pred HHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh---hcccCCeEEEehhhhhcch
Confidence 33344567788999999999999874443311 1224687777666665554
No 500
>PRK09087 hypothetical protein; Validated
Probab=72.17 E-value=28 Score=33.02 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=26.2
Q ss_pred cEEEEcccccccCcchHHHHHHHhc-ccCcEEEEeccCCCC
Q psy13010 170 QYLILDEAQAIKSSSSMRWKLLLGF-SCRNRLLLSGTPIQN 209 (573)
Q Consensus 170 ~~vIiDE~h~~kn~~s~~~~~~~~l-~~~~~~lLTgTP~~n 209 (573)
+.|++|+.|.+.......+..+..+ .....+++|++--+.
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~ 129 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPS 129 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChH
Confidence 5899999998854444455555444 345678888874443
Done!