Query psy13010
Match_columns 573
No_of_seqs 147 out of 2189
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 17:04:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 3.3E-56 1.1E-60 500.7 33.4 398 33-572 228-630 (800)
2 1z3i_X Similar to RAD54-like; 100.0 1.7E-55 5.9E-60 483.1 32.2 410 31-572 46-474 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 2.2E-52 7.5E-57 448.4 36.6 371 28-572 26-399 (500)
4 3dmq_A RNA polymerase-associat 100.0 4.5E-35 1.5E-39 333.8 27.7 360 38-571 151-561 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 2.6E-28 8.8E-33 260.0 29.4 168 39-224 8-183 (494)
6 4a2w_A RIG-I, retinoic acid in 99.9 6.8E-24 2.3E-28 241.5 27.3 175 31-219 237-430 (936)
7 3tbk_A RIG-I helicase domain; 99.9 1.6E-23 5.5E-28 227.0 28.3 164 40-216 4-184 (555)
8 4a2p_A RIG-I, retinoic acid in 99.9 1.4E-23 4.7E-28 227.6 27.5 162 39-214 6-184 (556)
9 2fwr_A DNA repair protein RAD2 99.9 3.9E-25 1.3E-29 234.9 14.0 193 38-305 91-286 (472)
10 4a2q_A RIG-I, retinoic acid in 99.9 1.8E-23 6E-28 235.6 28.0 165 38-216 246-427 (797)
11 2ykg_A Probable ATP-dependent 99.9 1.5E-21 5E-26 217.5 27.2 160 39-211 12-188 (696)
12 2oca_A DAR protein, ATP-depend 99.9 3.4E-22 1.2E-26 214.4 20.4 163 39-223 112-278 (510)
13 4gl2_A Interferon-induced heli 99.9 2.1E-22 7.1E-27 224.5 17.8 172 39-223 6-215 (699)
14 3h1t_A Type I site-specific re 99.9 8.4E-21 2.9E-25 207.0 22.2 161 38-217 176-352 (590)
15 1xti_A Probable ATP-dependent 99.8 9.3E-19 3.2E-23 180.9 28.9 157 40-208 30-196 (391)
16 1z5z_A Helicase of the SNF2/RA 99.8 1.3E-20 4.3E-25 183.6 12.0 157 266-572 13-170 (271)
17 1hv8_A Putative ATP-dependent 99.8 6.6E-18 2.3E-22 172.7 26.7 155 40-208 28-190 (367)
18 1s2m_A Putative ATP-dependent 99.8 2E-17 6.9E-22 171.4 29.3 154 40-206 43-204 (400)
19 2j0s_A ATP-dependent RNA helic 99.8 2.1E-17 7.1E-22 171.9 25.3 155 40-207 59-221 (410)
20 3eiq_A Eukaryotic initiation f 99.8 2.2E-17 7.5E-22 171.9 23.5 155 40-206 62-224 (414)
21 1rif_A DAR protein, DNA helica 99.8 1.5E-18 5E-23 171.1 12.6 163 39-223 112-278 (282)
22 1fuu_A Yeast initiation factor 99.8 8.2E-18 2.8E-22 173.9 16.8 166 28-207 23-204 (394)
23 3pey_A ATP-dependent RNA helic 99.7 1.4E-16 4.7E-21 164.6 24.3 153 40-207 27-188 (395)
24 3fht_A ATP-dependent RNA helic 99.7 9.1E-16 3.1E-20 159.5 28.9 169 25-207 24-211 (412)
25 2i4i_A ATP-dependent RNA helic 99.7 5.4E-16 1.8E-20 161.6 27.1 168 27-207 16-221 (417)
26 2db3_A ATP-dependent RNA helic 99.7 6.6E-16 2.2E-20 161.6 27.5 154 40-206 78-246 (434)
27 1oyw_A RECQ helicase, ATP-depe 99.7 1.8E-16 6.2E-21 169.3 20.4 158 40-214 25-192 (523)
28 2fz4_A DNA repair protein RAD2 99.7 4.3E-17 1.5E-21 155.8 13.9 141 38-211 91-233 (237)
29 2eyq_A TRCF, transcription-rep 99.7 2.1E-15 7.3E-20 174.2 27.3 155 39-209 602-764 (1151)
30 2z0m_A 337AA long hypothetical 99.7 8.4E-16 2.9E-20 155.1 21.1 148 40-207 16-171 (337)
31 3oiy_A Reverse gyrase helicase 99.7 3E-15 1E-19 155.9 24.3 159 40-210 21-207 (414)
32 2v1x_A ATP-dependent DNA helic 99.7 5.7E-15 1.9E-19 159.5 22.2 154 40-208 44-212 (591)
33 3hgt_A HDA1 complex subunit 3; 99.6 2.3E-15 7.8E-20 146.4 16.4 57 495-551 105-161 (328)
34 3fho_A ATP-dependent RNA helic 99.6 4.6E-16 1.6E-20 166.0 12.4 155 40-207 141-302 (508)
35 3sqw_A ATP-dependent RNA helic 99.6 2.1E-14 7.1E-19 155.9 23.7 159 40-208 43-225 (579)
36 1gm5_A RECG; helicase, replica 99.6 1.9E-15 6.6E-20 166.8 14.6 156 40-209 368-529 (780)
37 2gxq_A Heat resistant RNA depe 99.6 8.2E-15 2.8E-19 137.1 16.1 156 40-208 23-187 (207)
38 1t6n_A Probable ATP-dependent 99.6 1E-14 3.4E-19 137.9 16.5 158 40-209 36-203 (220)
39 3i5x_A ATP-dependent RNA helic 99.6 6E-14 2.1E-18 152.0 24.7 159 40-208 94-276 (563)
40 3fmp_B ATP-dependent RNA helic 99.6 3.5E-15 1.2E-19 158.4 13.5 155 40-208 114-279 (479)
41 2oxc_A Probable ATP-dependent 99.6 2.4E-14 8.1E-19 136.4 17.3 167 26-207 24-209 (230)
42 2pl3_A Probable ATP-dependent 99.6 4.3E-14 1.5E-18 135.1 18.8 168 27-208 26-214 (236)
43 3b6e_A Interferon-induced heli 99.6 3.9E-15 1.3E-19 140.1 10.2 133 38-183 31-177 (216)
44 1vec_A ATP-dependent RNA helic 99.6 3.5E-14 1.2E-18 132.7 15.9 155 40-207 25-188 (206)
45 1q0u_A Bstdead; DEAD protein, 99.6 2.8E-14 9.7E-19 134.7 14.8 160 40-213 26-197 (219)
46 3ber_A Probable ATP-dependent 99.6 5.4E-14 1.8E-18 135.5 16.2 156 40-208 65-229 (249)
47 1qde_A EIF4A, translation init 99.6 4.8E-14 1.6E-18 133.6 15.5 154 40-208 36-198 (224)
48 2xgj_A ATP-dependent RNA helic 99.5 2.2E-13 7.6E-18 155.1 22.5 143 40-207 86-234 (1010)
49 3bor_A Human initiation factor 99.5 9.8E-14 3.4E-18 132.7 14.0 169 28-208 32-216 (237)
50 1wrb_A DJVLGB; RNA helicase, D 99.5 2.6E-13 8.9E-18 131.1 15.7 155 40-207 45-220 (253)
51 2w00_A HSDR, R.ECOR124I; ATP-b 99.5 8.7E-14 3E-18 157.7 13.4 156 39-209 270-441 (1038)
52 4a4z_A Antiviral helicase SKI2 99.5 3E-12 1E-16 145.9 25.0 147 39-208 38-190 (997)
53 3l9o_A ATP-dependent RNA helic 99.5 2E-12 6.8E-17 148.7 20.6 142 40-206 184-331 (1108)
54 3dkp_A Probable ATP-dependent 99.4 4.7E-13 1.6E-17 128.7 13.0 155 40-206 51-220 (245)
55 4ddu_A Reverse gyrase; topoiso 99.4 5.5E-12 1.9E-16 145.0 22.8 157 40-211 78-265 (1104)
56 3iuy_A Probable ATP-dependent 99.4 2.2E-12 7.7E-17 122.4 15.7 155 40-207 42-209 (228)
57 2va8_A SSO2462, SKI2-type heli 99.4 9.6E-12 3.3E-16 138.5 22.7 151 40-208 30-187 (715)
58 2p6r_A Afuhel308 helicase; pro 99.4 1.7E-12 5.6E-17 144.2 15.3 149 40-207 25-183 (702)
59 3ly5_A ATP-dependent RNA helic 99.4 4.1E-12 1.4E-16 123.2 15.8 156 40-208 76-244 (262)
60 2zj8_A DNA helicase, putative 99.4 2.1E-12 7.3E-17 143.7 14.5 151 40-208 23-181 (720)
61 3fe2_A Probable ATP-dependent 99.4 9.7E-12 3.3E-16 119.2 16.1 169 25-206 28-217 (242)
62 3fmo_B ATP-dependent RNA helic 99.2 1.1E-10 3.9E-15 115.3 13.0 154 40-208 114-279 (300)
63 1gku_B Reverse gyrase, TOP-RG; 99.2 5.3E-10 1.8E-14 128.5 18.1 152 41-209 58-228 (1054)
64 2v6i_A RNA helicase; membrane, 99.0 1.3E-09 4.3E-14 113.5 13.8 128 59-208 2-136 (431)
65 1nkt_A Preprotein translocase 99.0 6.4E-08 2.2E-12 105.5 26.7 67 498-564 443-509 (922)
66 1tf5_A Preprotein translocase 99.0 5.6E-08 1.9E-12 105.9 23.8 67 498-564 415-481 (844)
67 2fsf_A Preprotein translocase 99.0 1.5E-08 5.3E-13 110.0 19.2 67 498-564 424-490 (853)
68 1yks_A Genome polyprotein [con 98.8 9.8E-09 3.3E-13 107.0 10.3 52 514-570 176-227 (440)
69 2wv9_A Flavivirin protease NS2 98.8 2.7E-08 9.4E-13 108.4 11.9 53 514-571 409-461 (673)
70 2z83_A Helicase/nucleoside tri 98.8 3.8E-08 1.3E-12 103.2 12.6 132 55-207 17-154 (459)
71 4f92_B U5 small nuclear ribonu 98.7 1.1E-07 3.8E-12 113.6 15.6 158 40-216 926-1101(1724)
72 2jlq_A Serine protease subunit 98.7 3.6E-07 1.2E-11 95.6 17.4 128 59-208 19-153 (451)
73 2xau_A PRE-mRNA-splicing facto 98.7 2.9E-07 9.9E-12 102.3 17.5 149 43-206 96-250 (773)
74 2whx_A Serine protease/ntpase/ 98.7 1.4E-07 4.7E-12 102.2 14.1 133 54-208 181-320 (618)
75 3llm_A ATP-dependent RNA helic 98.7 1.9E-07 6.5E-12 88.6 13.0 151 40-209 61-221 (235)
76 3crv_A XPD/RAD3 related DNA he 98.6 1E-07 3.6E-12 102.2 11.5 137 40-182 3-187 (551)
77 2vl7_A XPD; helicase, unknown 98.6 1.9E-07 6.6E-12 99.8 10.9 134 40-181 7-188 (540)
78 2d7d_A Uvrabc system protein B 98.5 9.5E-06 3.2E-10 88.6 24.0 71 500-571 430-500 (661)
79 4f92_B U5 small nuclear ribonu 98.5 7.4E-07 2.5E-11 106.6 13.7 160 40-216 79-262 (1724)
80 3jux_A Protein translocase sub 98.5 6.8E-06 2.3E-10 87.9 19.1 68 497-564 456-523 (822)
81 1c4o_A DNA nucleotide excision 98.4 1.6E-05 5.4E-10 86.9 20.7 72 499-571 423-494 (664)
82 3rc3_A ATP-dependent RNA helic 98.3 5.7E-06 2E-10 90.0 13.8 53 519-571 324-377 (677)
83 3o8b_A HCV NS3 protease/helica 98.2 3.6E-06 1.2E-10 90.7 10.0 128 57-208 230-362 (666)
84 4a15_A XPD helicase, ATP-depen 98.1 1E-05 3.5E-10 87.6 10.4 82 40-123 3-87 (620)
85 2ipc_A Preprotein translocase 98.0 3.6E-05 1.2E-09 83.9 13.7 146 40-219 79-240 (997)
86 2hjv_A ATP-dependent RNA helic 98.0 1.4E-05 4.8E-10 70.9 8.3 73 496-571 18-90 (163)
87 1t5i_A C_terminal domain of A 98.0 1.4E-05 4.9E-10 71.5 7.9 73 496-571 14-86 (172)
88 2jgn_A DBX, DDX3, ATP-dependen 97.9 1.1E-05 3.9E-10 73.1 5.6 74 496-571 28-101 (185)
89 2rb4_A ATP-dependent RNA helic 97.8 2.6E-05 8.8E-10 70.0 6.9 70 499-571 20-89 (175)
90 2p6n_A ATP-dependent RNA helic 97.8 2E-05 7E-10 71.8 6.1 72 496-571 38-109 (191)
91 1fuk_A Eukaryotic initiation f 97.8 6.4E-05 2.2E-09 66.7 8.5 69 500-571 17-85 (165)
92 4b3f_X DNA-binding protein smu 97.8 0.00021 7.2E-09 78.0 14.3 72 35-112 184-256 (646)
93 3eaq_A Heat resistant RNA depe 97.7 5.9E-05 2E-09 70.0 7.5 73 496-571 14-86 (212)
94 2yjt_D ATP-dependent RNA helic 96.5 2.1E-05 7.3E-10 70.2 0.0 66 498-565 15-80 (170)
95 2gk6_A Regulator of nonsense t 97.3 0.0019 6.6E-08 70.0 14.2 156 39-208 179-375 (624)
96 3i32_A Heat resistant RNA depe 97.3 0.00045 1.5E-08 67.5 7.3 73 496-571 11-83 (300)
97 2wjy_A Regulator of nonsense t 97.2 0.0034 1.2E-07 69.7 15.1 156 39-208 355-551 (800)
98 3e1s_A Exodeoxyribonuclease V, 97.1 0.0013 4.5E-08 70.3 10.2 132 38-209 187-318 (574)
99 2xzl_A ATP-dependent helicase 97.1 0.0028 9.6E-08 70.4 12.7 155 39-208 359-553 (802)
100 3upu_A ATP-dependent DNA helic 97.1 0.0035 1.2E-07 65.3 12.6 63 39-103 24-87 (459)
101 3lfu_A DNA helicase II; SF1 he 97.0 0.06 2.1E-06 58.5 22.6 70 38-113 7-78 (647)
102 1bor_A Transcription factor PM 96.8 0.00037 1.3E-08 49.2 1.7 46 373-420 3-48 (56)
103 1w36_D RECD, exodeoxyribonucle 96.8 0.0049 1.7E-07 66.5 11.2 146 42-210 151-302 (608)
104 2d8t_A Dactylidin, ring finger 96.7 0.00019 6.6E-09 53.5 -0.8 58 373-430 12-70 (71)
105 2o0j_A Terminase, DNA packagin 96.5 0.065 2.2E-06 53.8 16.1 154 39-219 162-324 (385)
106 2yur_A Retinoblastoma-binding 96.4 0.00047 1.6E-08 51.8 -0.0 48 374-421 13-64 (74)
107 2ecy_A TNF receptor-associated 96.4 0.00039 1.3E-08 50.9 -0.9 49 375-423 14-64 (66)
108 2djb_A Polycomb group ring fin 96.3 0.00056 1.9E-08 51.1 -0.5 55 374-428 13-69 (72)
109 2kre_A Ubiquitin conjugation f 96.2 0.00056 1.9E-08 54.7 -0.7 45 374-418 27-72 (100)
110 3cpe_A Terminase, DNA packagin 96.2 0.015 5.3E-07 62.4 10.1 147 39-209 162-316 (592)
111 1a5t_A Delta prime, HOLB; zinc 96.1 0.029 9.9E-07 55.6 11.1 46 41-86 3-51 (334)
112 2egp_A Tripartite motif-contai 96.1 0.00081 2.8E-08 51.2 -0.3 50 375-424 11-68 (79)
113 2orw_A Thymidine kinase; TMTK, 96.1 0.016 5.3E-07 52.1 8.0 35 62-99 6-40 (184)
114 1jm7_A BRCA1, breast cancer ty 96.0 0.0014 4.7E-08 53.7 0.6 50 375-424 20-73 (112)
115 2j9r_A Thymidine kinase; TK1, 96.0 0.047 1.6E-06 49.8 10.8 34 63-99 32-65 (214)
116 1jm7_B BARD1, BRCA1-associated 95.9 0.0024 8.4E-08 52.7 1.8 45 374-419 20-65 (117)
117 4ayc_A E3 ubiquitin-protein li 95.9 0.00074 2.5E-08 57.7 -1.5 45 375-419 52-97 (138)
118 2ecv_A Tripartite motif-contai 95.9 0.0016 5.6E-08 50.1 0.6 51 374-424 17-74 (85)
119 2ysl_A Tripartite motif-contai 95.8 0.00063 2.2E-08 50.9 -2.0 48 374-421 18-69 (73)
120 2b8t_A Thymidine kinase; deoxy 95.8 0.012 4.1E-07 54.5 5.9 38 59-99 12-49 (223)
121 3lrq_A E3 ubiquitin-protein li 95.7 0.00068 2.3E-08 54.3 -2.3 52 374-425 20-74 (100)
122 1t1h_A Gspef-atpub14, armadill 95.7 0.0007 2.4E-08 51.4 -2.2 48 374-421 6-55 (78)
123 2yu4_A E3 SUMO-protein ligase 95.7 0.0012 3.9E-08 52.3 -1.0 35 374-408 5-40 (94)
124 1l8q_A Chromosomal replication 95.7 0.095 3.2E-06 51.5 12.8 47 60-109 38-84 (324)
125 3vkw_A Replicase large subunit 95.7 0.015 5.1E-07 59.3 6.7 106 63-208 165-271 (446)
126 2kr4_A Ubiquitin conjugation f 95.6 0.0011 3.9E-08 51.2 -1.5 48 374-421 12-60 (85)
127 4b4t_J 26S protease regulatory 95.6 0.041 1.4E-06 55.4 9.3 46 58-109 181-226 (405)
128 2ea5_A Cell growth regulator w 95.5 0.0041 1.4E-07 45.6 1.5 48 372-422 11-59 (68)
129 1xx6_A Thymidine kinase; NESG, 95.5 0.064 2.2E-06 48.3 9.5 34 63-99 12-45 (191)
130 3fl2_A E3 ubiquitin-protein li 95.4 0.0014 4.9E-08 54.8 -1.7 47 375-421 51-99 (124)
131 2ecn_A Ring finger protein 141 95.4 0.0038 1.3E-07 46.1 0.9 49 374-423 13-62 (70)
132 2ecw_A Tripartite motif-contai 95.4 0.0022 7.5E-08 49.4 -0.5 50 375-424 18-74 (85)
133 2c2l_A CHIP, carboxy terminus 95.3 0.0021 7E-08 62.2 -1.0 53 372-424 204-258 (281)
134 2y43_A E3 ubiquitin-protein li 95.3 0.0029 9.8E-08 50.5 0.0 47 375-421 21-69 (99)
135 3ec2_A DNA replication protein 95.3 0.24 8.4E-06 43.7 12.7 45 42-86 16-65 (180)
136 1e4u_A Transcriptional repress 95.3 0.0052 1.8E-07 46.5 1.2 56 374-429 9-70 (78)
137 3syl_A Protein CBBX; photosynt 95.3 0.06 2E-06 52.4 9.3 40 61-100 69-109 (309)
138 2csy_A Zinc finger protein 183 95.1 0.0017 5.7E-08 49.7 -1.9 46 374-419 13-59 (81)
139 1z6u_A NP95-like ring finger p 95.1 0.0018 6.3E-08 56.0 -2.0 48 375-422 77-126 (150)
140 2ecj_A Tripartite motif-contai 95.1 0.0075 2.6E-07 42.5 1.6 32 375-406 14-45 (58)
141 1wgm_A Ubiquitin conjugation f 95.1 0.0023 8E-08 50.8 -1.2 48 374-421 20-69 (98)
142 2ysj_A Tripartite motif-contai 95.1 0.0049 1.7E-07 44.4 0.6 34 374-407 18-51 (63)
143 2orv_A Thymidine kinase; TP4A 95.0 0.12 4.1E-06 47.6 10.0 34 63-99 23-56 (234)
144 3l11_A E3 ubiquitin-protein li 95.0 0.0034 1.2E-07 51.6 -0.4 48 374-421 13-62 (115)
145 3ztg_A E3 ubiquitin-protein li 95.0 0.0022 7.4E-08 50.4 -1.7 46 374-419 11-60 (92)
146 2ecg_A Baculoviral IAP repeat- 94.8 0.006 2.1E-07 45.8 0.3 43 375-420 24-67 (75)
147 2p65_A Hypothetical protein PF 94.7 0.097 3.3E-06 46.2 8.5 27 59-85 43-69 (187)
148 3eie_A Vacuolar protein sortin 94.7 0.061 2.1E-06 52.9 7.7 40 60-105 52-91 (322)
149 2ct2_A Tripartite motif protei 94.7 0.0022 7.5E-08 49.8 -2.3 48 375-422 14-69 (88)
150 1g25_A CDK-activating kinase a 94.7 0.0022 7.4E-08 46.7 -2.2 50 375-424 2-58 (65)
151 4ic3_A E3 ubiquitin-protein li 94.7 0.0054 1.8E-07 45.9 -0.1 42 375-419 23-65 (74)
152 2f42_A STIP1 homology and U-bo 94.6 0.0031 1.1E-07 55.8 -1.8 49 374-422 104-154 (179)
153 3knv_A TNF receptor-associated 94.6 0.0063 2.1E-07 52.0 0.1 48 374-421 29-78 (141)
154 2z4s_A Chromosomal replication 94.5 0.33 1.1E-05 49.8 12.8 45 60-105 131-175 (440)
155 2ckl_A Polycomb group ring fin 94.5 0.0049 1.7E-07 50.0 -0.9 48 374-421 13-62 (108)
156 2qp9_X Vacuolar protein sortin 94.3 0.099 3.4E-06 52.2 8.2 24 60-83 85-108 (355)
157 1chc_A Equine herpes virus-1 r 94.3 0.0082 2.8E-07 43.9 0.1 47 374-420 3-51 (68)
158 1rmd_A RAG1; V(D)J recombinati 94.2 0.0042 1.4E-07 51.2 -1.9 50 375-424 22-73 (116)
159 3u61_B DNA polymerase accessor 94.1 0.17 5.9E-06 49.5 9.5 41 168-208 105-147 (324)
160 3bos_A Putative DNA replicatio 94.1 0.08 2.7E-06 49.1 6.7 40 47-86 38-79 (242)
161 3te6_A Regulatory protein SIR3 94.1 1.5 5E-05 42.7 15.7 45 42-86 25-72 (318)
162 2y1n_A E3 ubiquitin-protein li 94.1 0.0047 1.6E-07 61.5 -2.1 49 376-424 332-382 (389)
163 2ect_A Ring finger protein 126 94.0 0.016 5.3E-07 43.8 1.3 54 374-427 13-70 (78)
164 1iym_A EL5; ring-H2 finger, ub 94.0 0.012 4.2E-07 40.8 0.6 45 374-418 3-52 (55)
165 3hct_A TNF receptor-associated 94.0 0.0039 1.3E-07 51.5 -2.3 49 374-422 16-66 (118)
166 3uk6_A RUVB-like 2; hexameric 94.0 0.22 7.7E-06 49.6 10.2 44 41-84 48-95 (368)
167 4b4t_H 26S protease regulatory 94.0 0.13 4.4E-06 52.6 8.2 45 58-108 242-286 (467)
168 2ckl_B Ubiquitin ligase protei 93.9 0.0054 1.8E-07 54.1 -1.9 46 375-420 53-101 (165)
169 3ng2_A RNF4, snurf, ring finge 93.8 0.0017 5.9E-08 48.1 -4.5 52 372-423 6-65 (71)
170 2chg_A Replication factor C sm 93.8 0.36 1.2E-05 43.7 10.5 26 61-86 40-65 (226)
171 2ep4_A Ring finger protein 24; 93.8 0.0065 2.2E-07 45.4 -1.3 49 373-421 12-64 (74)
172 4b4t_I 26S protease regulatory 93.8 0.11 3.7E-06 52.7 7.1 45 59-109 216-260 (437)
173 2yho_A E3 ubiquitin-protein li 93.6 0.01 3.4E-07 45.0 -0.5 46 375-423 17-63 (79)
174 3h4m_A Proteasome-activating n 93.6 0.11 3.7E-06 49.9 6.8 26 58-83 50-75 (285)
175 3e2i_A Thymidine kinase; Zn-bi 93.6 0.26 9.1E-06 44.8 8.7 34 63-99 32-65 (219)
176 3n70_A Transport activator; si 93.5 0.18 6E-06 43.0 7.3 26 57-82 22-47 (145)
177 1xwi_A SKD1 protein; VPS4B, AA 93.3 0.078 2.7E-06 52.1 5.3 24 60-83 46-69 (322)
178 2qz4_A Paraplegin; AAA+, SPG7, 93.2 0.4 1.4E-05 45.0 10.1 24 60-83 40-63 (262)
179 4b4t_L 26S protease subunit RP 93.2 0.13 4.4E-06 52.5 6.8 44 59-108 215-258 (437)
180 2xeu_A Ring finger protein 4; 93.0 0.0028 9.6E-08 45.8 -4.4 50 375-424 2-59 (64)
181 1sxj_D Activator 1 41 kDa subu 92.9 0.12 4.2E-06 51.1 6.1 37 49-85 46-84 (353)
182 2ecm_A Ring finger and CHY zin 92.9 0.017 5.7E-07 40.1 -0.3 43 375-417 4-51 (55)
183 1jbk_A CLPB protein; beta barr 92.8 1.3 4.4E-05 38.8 12.3 26 60-85 44-69 (195)
184 3t6p_A Baculoviral IAP repeat- 92.8 0.028 9.6E-07 55.5 1.0 44 374-420 293-337 (345)
185 2bjv_A PSP operon transcriptio 92.7 0.29 9.8E-06 46.3 8.2 39 56-97 26-64 (265)
186 3co5_A Putative two-component 92.6 0.16 5.5E-06 43.1 5.5 23 57-79 25-47 (143)
187 1v87_A Deltex protein 2; ring- 92.5 0.022 7.5E-07 46.6 -0.0 46 375-420 24-93 (114)
188 2gno_A DNA polymerase III, gam 92.4 0.44 1.5E-05 46.2 9.1 38 45-82 2-41 (305)
189 3htk_C E3 SUMO-protein ligase 92.4 0.013 4.5E-07 54.6 -1.8 52 373-424 178-235 (267)
190 1njg_A DNA polymerase III subu 92.4 0.77 2.6E-05 42.0 10.6 26 61-86 47-72 (250)
191 2vje_A E3 ubiquitin-protein li 92.3 0.012 4.2E-07 42.5 -1.6 49 371-419 3-55 (64)
192 3vfd_A Spastin; ATPase, microt 92.3 0.22 7.6E-06 50.3 7.2 41 59-105 148-188 (389)
193 4b4t_K 26S protease regulatory 92.1 0.18 6.1E-06 51.4 6.1 43 58-106 205-247 (428)
194 2zan_A Vacuolar protein sortin 92.1 0.14 4.8E-06 52.8 5.4 41 60-105 168-208 (444)
195 4b4t_M 26S protease regulatory 92.1 0.082 2.8E-06 53.9 3.6 44 59-108 215-258 (434)
196 2qby_B CDC6 homolog 3, cell di 91.8 0.38 1.3E-05 48.1 8.3 26 61-86 47-72 (384)
197 2ea6_A Ring finger protein 4; 91.8 0.0078 2.7E-07 44.1 -3.3 45 374-418 13-65 (69)
198 3cf0_A Transitional endoplasmi 91.8 0.33 1.1E-05 47.1 7.4 42 58-105 48-89 (301)
199 2kiz_A E3 ubiquitin-protein li 91.7 0.019 6.4E-07 42.1 -1.3 47 373-419 11-61 (69)
200 1w4r_A Thymidine kinase; type 91.7 1.1 3.6E-05 40.1 9.9 34 63-99 24-57 (195)
201 1iqp_A RFCS; clamp loader, ext 91.6 0.37 1.3E-05 46.9 7.7 25 61-85 48-72 (327)
202 3pvs_A Replication-associated 91.4 0.35 1.2E-05 49.8 7.4 23 61-83 52-74 (447)
203 3t15_A Ribulose bisphosphate c 91.3 0.39 1.3E-05 46.3 7.3 40 60-105 37-76 (293)
204 3d8b_A Fidgetin-like protein 1 91.2 0.28 9.7E-06 48.8 6.3 37 59-101 117-153 (357)
205 3hcs_A TNF receptor-associated 90.9 0.019 6.6E-07 50.7 -2.3 49 374-422 16-66 (170)
206 2l0b_A E3 ubiquitin-protein li 90.9 0.015 5E-07 45.5 -2.8 46 373-418 37-86 (91)
207 1x4j_A Ring finger protein 38; 90.9 0.016 5.6E-07 43.3 -2.4 47 373-419 20-70 (75)
208 1jr3_A DNA polymerase III subu 90.7 0.62 2.1E-05 46.3 8.4 25 62-86 41-65 (373)
209 3hws_A ATP-dependent CLP prote 90.5 0.6 2E-05 46.5 8.1 25 59-83 51-75 (363)
210 2r2a_A Uncharacterized protein 90.4 0.24 8.2E-06 44.8 4.5 22 62-83 8-29 (199)
211 3hu3_A Transitional endoplasmi 90.4 0.51 1.8E-05 49.1 7.6 25 58-82 237-261 (489)
212 2q6t_A DNAB replication FORK h 89.8 1.7 5.7E-05 44.6 10.9 53 56-110 197-249 (444)
213 1d2n_A N-ethylmaleimide-sensit 89.6 0.98 3.4E-05 42.8 8.4 23 61-83 66-88 (272)
214 2r6a_A DNAB helicase, replicat 89.6 3.6 0.00012 42.2 13.3 52 56-109 200-251 (454)
215 2v1u_A Cell division control p 89.6 0.96 3.3E-05 45.0 8.8 27 59-85 44-70 (387)
216 2vje_B MDM4 protein; proto-onc 89.6 0.03 1E-06 40.2 -1.8 46 374-419 5-54 (63)
217 4ap4_A E3 ubiquitin ligase RNF 89.5 0.022 7.6E-07 47.8 -3.0 54 374-427 5-66 (133)
218 1sxj_B Activator 1 37 kDa subu 88.9 0.8 2.7E-05 44.4 7.4 24 62-85 45-68 (323)
219 1fnn_A CDC6P, cell division co 88.7 4.5 0.00015 40.1 13.1 25 61-85 46-70 (389)
220 3b9p_A CG5977-PA, isoform A; A 88.5 0.66 2.3E-05 44.6 6.4 25 59-83 54-78 (297)
221 1lv7_A FTSH; alpha/beta domain 88.1 1.1 3.7E-05 42.1 7.5 25 59-83 45-69 (257)
222 1ojl_A Transcriptional regulat 88.1 2.2 7.5E-05 41.2 9.9 38 57-97 23-60 (304)
223 2bay_A PRE-mRNA splicing facto 88.1 0.043 1.5E-06 39.1 -1.8 52 376-427 3-56 (61)
224 2c9o_A RUVB-like 1; hexameric 87.5 0.56 1.9E-05 48.4 5.5 58 41-102 41-102 (456)
225 2w58_A DNAI, primosome compone 87.1 1.3 4.3E-05 39.7 7.0 34 60-96 55-88 (202)
226 3k1j_A LON protease, ATP-depen 87.0 2.6 8.9E-05 45.1 10.5 39 46-84 47-85 (604)
227 3bh0_A DNAB-like replicative h 86.9 8.2 0.00028 37.3 13.3 53 56-111 65-117 (315)
228 1r6b_X CLPA protein; AAA+, N-t 86.9 3.6 0.00012 45.3 11.9 37 49-85 195-233 (758)
229 2cvh_A DNA repair and recombin 86.6 5 0.00017 36.1 11.0 44 58-107 19-64 (220)
230 2ce7_A Cell division protein F 86.5 3.2 0.00011 42.8 10.4 25 59-83 49-73 (476)
231 4a1f_A DNAB helicase, replicat 86.5 4.2 0.00014 39.8 10.8 55 52-109 39-93 (338)
232 3cf2_A TER ATPase, transitiona 86.2 0.54 1.9E-05 51.8 4.6 41 59-105 511-551 (806)
233 1uaa_A REP helicase, protein ( 86.1 0.93 3.2E-05 49.3 6.5 69 40-114 2-72 (673)
234 2ecl_A Ring-box protein 2; RNF 85.9 0.068 2.3E-06 40.5 -1.9 47 375-421 14-76 (81)
235 1sxj_A Activator 1 95 kDa subu 85.5 2.4 8.4E-05 44.3 9.2 24 60-83 78-101 (516)
236 2qby_A CDC6 homolog 1, cell di 85.4 2.2 7.7E-05 42.2 8.6 28 59-86 45-72 (386)
237 2chq_A Replication factor C sm 85.1 0.62 2.1E-05 45.1 4.1 38 48-85 25-64 (319)
238 3pfi_A Holliday junction ATP-d 85.1 4.5 0.00015 39.4 10.4 23 60-82 56-78 (338)
239 3bgw_A DNAB-like replicative h 85.1 3.7 0.00013 42.0 10.0 52 56-110 194-245 (444)
240 4fcw_A Chaperone protein CLPB; 84.7 0.87 3E-05 44.0 5.0 33 61-96 49-81 (311)
241 1wim_A KIAA0161 protein; ring 84.5 0.15 5E-06 39.9 -0.7 32 375-406 4-38 (94)
242 1qvr_A CLPB protein; coiled co 84.1 3.1 0.00011 46.5 9.7 39 47-85 177-217 (854)
243 2kjq_A DNAA-related protein; s 83.9 2.3 8E-05 36.1 6.7 28 58-85 35-62 (149)
244 1sxj_E Activator 1 40 kDa subu 83.5 5.2 0.00018 39.2 10.2 41 45-85 19-62 (354)
245 1g5t_A COB(I)alamin adenosyltr 83.1 22 0.00074 31.6 12.9 35 59-96 28-62 (196)
246 3dm5_A SRP54, signal recogniti 82.5 4.3 0.00015 41.3 9.1 33 63-98 104-136 (443)
247 2w0m_A SSO2452; RECA, SSPF, un 81.9 8.2 0.00028 34.8 10.3 49 58-109 22-70 (235)
248 3hjh_A Transcription-repair-co 81.6 5.7 0.0002 41.0 9.8 54 62-122 17-71 (483)
249 1w5s_A Origin recognition comp 81.3 3.9 0.00013 41.0 8.5 25 61-85 52-78 (412)
250 3dpl_R Ring-box protein 1; ubi 81.2 0.29 9.8E-06 39.2 -0.1 44 375-418 36-98 (106)
251 1xp8_A RECA protein, recombina 81.0 3 0.0001 41.4 7.1 46 58-106 73-118 (366)
252 4dzz_A Plasmid partitioning pr 81.0 15 0.00052 32.3 11.6 114 63-221 6-121 (206)
253 4a0k_B E3 ubiquitin-protein li 80.9 0.34 1.2E-05 39.5 0.2 47 375-421 47-112 (117)
254 2r8r_A Sensor protein; KDPD, P 80.7 2.2 7.5E-05 39.1 5.5 27 61-87 8-34 (228)
255 2l82_A Designed protein OR32; 80.2 3.7 0.00013 31.9 5.8 47 518-564 5-51 (162)
256 2qgz_A Helicase loader, putati 79.8 2.9 9.8E-05 40.5 6.5 36 59-97 152-188 (308)
257 1pjr_A PCRA; DNA repair, DNA r 79.8 2 6.8E-05 47.1 5.9 69 38-112 9-79 (724)
258 2zr9_A Protein RECA, recombina 79.2 2.5 8.4E-05 41.8 5.9 44 59-105 61-104 (349)
259 2zpa_A Uncharacterized protein 78.4 4.9 0.00017 43.1 8.1 53 39-99 174-226 (671)
260 3cf2_A TER ATPase, transitiona 78.1 1.9 6.4E-05 47.6 5.0 42 59-106 238-279 (806)
261 3ipz_A Monothiol glutaredoxin- 77.9 7.8 0.00027 30.7 7.5 65 504-570 7-77 (109)
262 3gx8_A Monothiol glutaredoxin- 77.8 13 0.00043 30.1 8.9 65 504-570 5-78 (121)
263 3kl4_A SRP54, signal recogniti 77.8 18 0.00061 36.7 11.8 32 63-97 101-132 (433)
264 2zts_A Putative uncharacterize 77.1 7.2 0.00025 35.7 8.3 50 60-111 31-80 (251)
265 1u6t_A SH3 domain-binding glut 76.3 5.8 0.0002 32.3 6.3 45 518-562 2-53 (121)
266 4ap4_A E3 ubiquitin ligase RNF 76.3 0.12 4.1E-06 43.2 -4.1 52 374-425 70-129 (133)
267 2qen_A Walker-type ATPase; unk 75.8 10 0.00035 36.7 9.4 38 42-82 17-54 (350)
268 2yan_A Glutaredoxin-3; oxidore 75.7 9.8 0.00033 29.7 7.5 58 504-562 6-69 (105)
269 2dhr_A FTSH; AAA+ protein, hex 75.6 12 0.00041 38.8 10.0 24 60-83 65-88 (499)
270 1ixz_A ATP-dependent metallopr 75.2 10 0.00036 35.0 8.9 24 60-83 50-73 (254)
271 3zyw_A Glutaredoxin-3; metal b 75.2 10 0.00036 30.1 7.6 66 504-571 5-76 (111)
272 3pxi_A Negative regulator of g 74.1 3.7 0.00013 45.2 6.1 24 62-85 524-547 (758)
273 2d8s_A Cellular modulator of i 73.9 0.44 1.5E-05 35.9 -1.0 52 372-423 11-72 (80)
274 3o8b_A HCV NS3 protease/helica 73.8 5.2 0.00018 43.0 6.9 40 514-553 395-434 (666)
275 2lqo_A Putative glutaredoxin R 73.6 8.3 0.00028 29.6 6.3 56 516-571 4-60 (92)
276 2wul_A Glutaredoxin related pr 73.1 13 0.00046 29.9 7.7 61 502-568 11-78 (118)
277 1zu4_A FTSY; GTPase, signal re 72.3 18 0.0006 35.0 9.8 33 63-98 109-141 (320)
278 3cmu_A Protein RECA, recombina 71.8 16 0.00054 44.4 10.9 46 58-106 731-776 (2050)
279 1u94_A RECA protein, recombina 69.8 11 0.00036 37.3 7.7 40 58-100 62-101 (356)
280 3cmu_A Protein RECA, recombina 69.3 18 0.0006 44.1 10.5 44 58-104 1426-1469(2050)
281 3u4q_B ATP-dependent helicase/ 68.5 7.8 0.00027 45.0 7.4 52 63-114 5-56 (1166)
282 1vma_A Cell division protein F 68.5 17 0.00057 35.0 8.6 33 63-98 108-140 (306)
283 2wci_A Glutaredoxin-4; redox-a 67.9 14 0.00049 30.5 7.0 65 504-570 24-94 (135)
284 2wem_A Glutaredoxin-related pr 67.9 16 0.00053 29.5 7.1 55 516-571 20-81 (118)
285 1iy2_A ATP-dependent metallopr 67.4 11 0.00037 35.5 7.0 24 60-83 74-97 (278)
286 2fna_A Conserved hypothetical 67.3 58 0.002 31.1 12.7 37 42-83 18-54 (357)
287 2r44_A Uncharacterized protein 65.9 3.2 0.00011 40.4 3.0 32 52-83 39-70 (331)
288 2px0_A Flagellar biosynthesis 65.4 14 0.00048 35.3 7.4 34 63-98 109-142 (296)
289 3u4q_A ATP-dependent helicase/ 65.2 10 0.00034 44.3 7.4 67 39-111 9-79 (1232)
290 3hr8_A Protein RECA; alpha and 64.4 18 0.00063 35.5 8.1 40 62-104 64-103 (356)
291 1n0w_A DNA repair protein RAD5 63.8 44 0.0015 30.1 10.4 41 59-99 24-67 (243)
292 2iut_A DNA translocase FTSK; n 63.2 35 0.0012 35.8 10.3 41 60-100 215-256 (574)
293 1tue_A Replication protein E1; 63.1 6.3 0.00022 35.5 4.0 23 61-83 60-82 (212)
294 1ofh_A ATP-dependent HSL prote 63.1 7.1 0.00024 37.2 4.9 25 59-83 50-74 (310)
295 2z43_A DNA repair and recombin 62.6 23 0.00078 34.2 8.5 41 61-101 109-152 (324)
296 1t1v_A SH3BGRL3, SH3 domain-bi 62.1 20 0.00067 27.2 6.4 55 517-571 3-65 (93)
297 1sxj_C Activator 1 40 kDa subu 61.0 9.8 0.00034 37.1 5.5 41 45-85 30-72 (340)
298 1um8_A ATP-dependent CLP prote 60.8 7.2 0.00024 38.7 4.5 25 59-83 72-96 (376)
299 2x8a_A Nuclear valosin-contain 60.5 9.5 0.00032 36.0 5.1 24 59-82 44-67 (274)
300 1u0j_A DNA replication protein 59.0 13 0.00045 34.8 5.7 44 40-83 77-128 (267)
301 1ls1_A Signal recognition part 59.0 22 0.00074 33.9 7.4 33 63-98 102-134 (295)
302 2ct6_A SH3 domain-binding glut 57.8 33 0.0011 27.0 7.2 46 516-561 8-60 (111)
303 3io5_A Recombination and repai 57.2 31 0.0011 33.3 8.0 41 62-103 31-71 (333)
304 3oiy_A Reverse gyrase helicase 57.2 26 0.0009 34.9 8.1 69 496-564 45-116 (414)
305 3g5j_A Putative ATP/GTP bindin 56.5 21 0.00072 28.9 6.1 52 499-551 73-126 (134)
306 1wik_A Thioredoxin-like protei 56.2 41 0.0014 26.2 7.6 48 515-562 14-67 (109)
307 2dr3_A UPF0273 protein PH0284; 56.0 16 0.00055 33.2 5.9 49 59-110 23-71 (247)
308 1qvr_A CLPB protein; coiled co 55.8 14 0.00047 41.3 6.2 33 61-96 590-622 (854)
309 3k1l_B Fancl; UBC, ring, RWD, 55.6 3 0.0001 40.4 0.6 49 373-421 305-373 (381)
310 1byi_A Dethiobiotin synthase; 55.5 14 0.00048 33.2 5.2 33 63-98 6-38 (224)
311 3nbx_X ATPase RAVA; AAA+ ATPas 54.4 7 0.00024 40.5 3.2 32 52-83 34-65 (500)
312 3cmw_A Protein RECA, recombina 52.8 26 0.00088 41.9 7.9 44 58-104 731-774 (1706)
313 2kpo_A Rossmann 2X2 fold prote 52.5 44 0.0015 24.2 6.2 63 502-565 36-100 (110)
314 1v5w_A DMC1, meiotic recombina 52.3 47 0.0016 32.2 8.8 39 62-100 125-166 (343)
315 1ypw_A Transitional endoplasmi 51.7 7.3 0.00025 43.2 3.0 25 58-82 237-261 (806)
316 4ehx_A Tetraacyldisaccharide 4 51.4 25 0.00086 33.8 6.5 18 68-85 47-64 (315)
317 3of5_A Dethiobiotin synthetase 50.5 18 0.00062 32.9 5.1 33 63-98 9-41 (228)
318 3qxc_A Dethiobiotin synthetase 50.2 19 0.00065 33.2 5.2 33 63-98 26-58 (242)
319 2eyq_A TRCF, transcription-rep 50.0 32 0.0011 39.7 8.1 66 504-571 802-869 (1151)
320 3qmx_A Glutaredoxin A, glutare 49.7 51 0.0017 25.2 6.9 56 515-570 15-71 (99)
321 2i1q_A DNA repair and recombin 49.4 47 0.0016 31.8 8.2 23 61-83 100-122 (322)
322 3gk5_A Uncharacterized rhodane 48.3 14 0.00048 29.0 3.5 38 513-550 53-90 (108)
323 1g41_A Heat shock protein HSLU 47.7 12 0.00041 38.0 3.6 25 59-83 50-74 (444)
324 2r62_A Cell division protease 47.0 11 0.00037 35.2 3.0 25 59-83 44-68 (268)
325 2ffh_A Protein (FFH); SRP54, s 46.4 87 0.003 31.5 9.8 33 63-98 102-134 (425)
326 2kpo_A Rossmann 2X2 fold prote 46.1 61 0.0021 23.5 6.0 53 518-573 5-58 (110)
327 1g3q_A MIND ATPase, cell divis 45.8 21 0.00073 32.2 4.9 33 63-98 7-39 (237)
328 2j37_W Signal recognition part 45.1 90 0.0031 32.2 9.8 33 63-98 105-137 (504)
329 3pxg_A Negative regulator of g 44.9 17 0.00057 37.3 4.3 37 49-85 189-227 (468)
330 3hix_A ALR3790 protein; rhodan 44.8 24 0.00084 27.4 4.4 39 512-550 49-88 (106)
331 3ug7_A Arsenical pump-driving 44.5 28 0.00095 34.1 5.7 33 62-97 29-61 (349)
332 4b3f_X DNA-binding protein smu 43.2 35 0.0012 36.5 6.7 50 497-546 215-264 (646)
333 3q9l_A Septum site-determining 43.1 24 0.00084 32.3 4.9 32 63-97 7-38 (260)
334 3iwh_A Rhodanese-like domain p 43.0 18 0.00062 28.2 3.3 38 513-550 54-91 (103)
335 1hyq_A MIND, cell division inh 42.8 26 0.00089 32.3 5.0 32 63-97 7-38 (263)
336 2ph1_A Nucleotide-binding prot 42.6 25 0.00086 32.6 4.8 32 63-97 23-54 (262)
337 1ny5_A Transcriptional regulat 42.6 56 0.0019 32.3 7.7 50 57-109 158-208 (387)
338 2jtq_A Phage shock protein E; 41.8 45 0.0015 24.4 5.3 47 504-550 29-76 (85)
339 3dzd_A Transcriptional regulat 41.4 74 0.0025 31.2 8.3 23 57-79 150-172 (368)
340 1cp2_A CP2, nitrogenase iron p 40.8 21 0.0007 33.2 3.9 29 65-96 7-35 (269)
341 2jun_A Midline-1; B-BOX, TRIM, 40.8 6.8 0.00023 30.5 0.4 31 375-405 2-35 (101)
342 3fgn_A Dethiobiotin synthetase 40.5 26 0.00088 32.5 4.4 26 63-88 31-56 (251)
343 1q57_A DNA primase/helicase; d 40.4 22 0.00075 36.8 4.4 50 58-109 241-290 (503)
344 4ddu_A Reverse gyrase; topoiso 40.3 59 0.002 37.3 8.2 69 496-564 102-173 (1104)
345 3cio_A ETK, tyrosine-protein k 40.3 30 0.001 32.9 5.1 32 63-97 109-140 (299)
346 3fwy_A Light-independent proto 40.2 21 0.00073 34.3 4.0 49 40-96 34-82 (314)
347 3foj_A Uncharacterized protein 40.0 32 0.0011 26.3 4.4 38 513-550 54-91 (100)
348 3cwq_A Para family chromosome 39.4 33 0.0011 30.5 5.0 41 63-107 5-47 (209)
349 1j8m_F SRP54, signal recogniti 39.2 1.2E+02 0.004 28.7 9.1 33 63-98 102-134 (297)
350 3bfv_A CAPA1, CAPB2, membrane 39.0 31 0.0011 32.3 4.9 31 63-96 87-117 (271)
351 3ea0_A ATPase, para family; al 38.8 31 0.0011 31.2 4.8 33 63-97 9-41 (245)
352 3kjh_A CO dehydrogenase/acetyl 38.6 15 0.0005 33.6 2.5 29 65-96 6-34 (254)
353 3end_A Light-independent proto 38.5 23 0.00079 33.7 4.0 31 63-96 45-75 (307)
354 3eme_A Rhodanese-like domain p 38.4 33 0.0011 26.3 4.2 38 513-550 54-91 (103)
355 1hqc_A RUVB; extended AAA-ATPa 38.1 36 0.0012 32.4 5.3 25 59-83 38-62 (324)
356 3la6_A Tyrosine-protein kinase 38.1 35 0.0012 32.3 5.0 31 63-96 97-127 (286)
357 1aba_A Glutaredoxin; electron 37.7 1.1E+02 0.0039 22.2 7.1 48 517-564 1-58 (87)
358 2afh_E Nitrogenase iron protei 37.6 25 0.00085 33.1 4.0 29 65-96 8-36 (289)
359 2oze_A ORF delta'; para, walke 37.4 55 0.0019 30.7 6.5 28 66-96 44-71 (298)
360 3zq6_A Putative arsenical pump 36.9 31 0.0011 33.2 4.6 33 63-98 18-50 (324)
361 1gmx_A GLPE protein; transfera 36.8 45 0.0015 25.8 4.8 44 506-550 50-94 (108)
362 2fsx_A RV0390, COG0607: rhodan 36.4 50 0.0017 27.4 5.3 38 513-550 78-116 (148)
363 1gm5_A RECG; helicase, replica 35.5 69 0.0024 35.1 7.5 69 496-564 398-470 (780)
364 2ipc_A Preprotein translocase 35.3 75 0.0026 35.3 7.5 40 497-536 425-464 (997)
365 2lnd_A De novo designed protei 34.3 1.3E+02 0.0045 21.8 7.0 68 494-562 30-99 (112)
366 1wv9_A Rhodanese homolog TT165 34.1 31 0.0011 26.0 3.4 35 516-550 54-88 (94)
367 2xj4_A MIPZ; replication, cell 33.3 38 0.0013 31.8 4.5 41 63-106 9-52 (286)
368 1sky_E F1-ATPase, F1-ATP synth 32.9 1.5E+02 0.0051 30.2 9.0 38 48-86 141-178 (473)
369 3k9g_A PF-32 protein; ssgcid, 32.4 37 0.0013 31.4 4.2 30 63-96 32-61 (267)
370 3vk6_A E3 ubiquitin-protein li 32.3 2.2 7.7E-05 33.0 -3.5 31 389-419 15-47 (101)
371 2woo_A ATPase GET3; tail-ancho 32.2 46 0.0016 32.1 5.0 33 62-97 22-54 (329)
372 3pxi_A Negative regulator of g 32.0 33 0.0011 37.6 4.3 38 48-85 188-227 (758)
373 1wcv_1 SOJ, segregation protei 31.7 28 0.00097 32.0 3.3 32 63-97 11-42 (257)
374 3iqw_A Tail-anchored protein t 31.0 48 0.0016 32.1 4.8 42 62-106 19-62 (334)
375 1in4_A RUVB, holliday junction 30.6 38 0.0013 32.7 4.1 41 43-83 31-75 (334)
376 2khp_A Glutaredoxin; thioredox 30.2 1.5E+02 0.0052 21.6 6.8 46 517-562 7-53 (92)
377 3cmw_A Protein RECA, recombina 30.0 1.5E+02 0.005 35.6 9.4 40 63-105 1435-1475(1706)
378 2oap_1 GSPE-2, type II secreti 29.9 44 0.0015 34.6 4.6 50 163-219 328-377 (511)
379 3ice_A Transcription terminati 29.4 1.1E+02 0.0036 30.6 6.9 49 46-97 162-210 (422)
380 3ilm_A ALR3790 protein; rhodan 29.4 46 0.0016 27.5 3.9 38 513-550 54-92 (141)
381 1g8p_A Magnesium-chelatase 38 29.0 25 0.00084 34.0 2.4 26 59-84 45-70 (350)
382 3flh_A Uncharacterized protein 28.9 40 0.0014 27.0 3.3 38 513-550 69-108 (124)
383 3lda_A DNA repair protein RAD5 28.5 3.2E+02 0.011 26.9 10.6 40 61-100 180-222 (400)
384 3tqf_A HPR(Ser) kinase; transf 27.6 29 0.00099 30.2 2.2 23 59-81 16-38 (181)
385 2hhg_A Hypothetical protein RP 27.6 55 0.0019 26.6 4.1 38 513-550 84-122 (139)
386 2c95_A Adenylate kinase 1; tra 27.5 40 0.0014 29.1 3.4 27 57-83 7-33 (196)
387 1ihu_A Arsenical pump-driving 27.4 58 0.002 34.3 5.1 34 62-98 11-44 (589)
388 2gk6_A Regulator of nonsense t 26.9 1E+02 0.0035 32.7 7.0 52 497-548 205-257 (624)
389 1cr0_A DNA primase/helicase; R 26.9 80 0.0027 29.6 5.6 52 56-109 32-83 (296)
390 3pct_A Class C acid phosphatas 26.7 1.6E+02 0.0055 27.2 7.4 58 502-559 104-170 (260)
391 2klx_A Glutaredoxin; thioredox 26.7 86 0.0029 22.9 4.7 43 517-561 7-50 (89)
392 3nhv_A BH2092 protein; alpha-b 26.4 64 0.0022 26.7 4.3 39 513-551 70-110 (144)
393 3fkq_A NTRC-like two-domain pr 26.4 63 0.0021 31.7 4.9 32 63-97 148-179 (373)
394 2l69_A Rossmann 2X3 fold prote 26.0 2.1E+02 0.0071 21.4 6.4 43 517-562 4-46 (134)
395 2w00_A HSDR, R.ECOR124I; ATP-b 25.7 1.1E+02 0.0039 34.6 7.3 25 515-539 537-561 (1038)
396 2obb_A Hypothetical protein; s 25.5 1.1E+02 0.0037 25.4 5.4 48 503-550 28-76 (142)
397 3io3_A DEHA2D07832P; chaperone 25.5 70 0.0024 31.2 4.9 41 63-106 22-66 (348)
398 1gku_B Reverse gyrase, TOP-RG; 25.5 1.8E+02 0.0063 33.0 9.1 68 496-563 80-155 (1054)
399 2xxa_A Signal recognition part 25.5 69 0.0023 32.3 5.0 34 63-98 104-137 (433)
400 2woj_A ATPase GET3; tail-ancho 25.3 59 0.002 31.7 4.4 33 63-98 22-56 (354)
401 3vaa_A Shikimate kinase, SK; s 25.0 53 0.0018 28.7 3.7 26 58-83 24-49 (199)
402 3tg1_B Dual specificity protei 24.5 58 0.002 27.3 3.7 36 515-550 93-137 (158)
403 3ocu_A Lipoprotein E; hydrolas 24.4 1.2E+02 0.0041 28.1 6.0 59 502-560 104-171 (262)
404 2yvu_A Probable adenylyl-sulfa 24.4 79 0.0027 27.1 4.7 25 62-86 16-40 (186)
405 1fov_A Glutaredoxin 3, GRX3; a 24.3 1.8E+02 0.006 20.4 6.1 45 517-561 2-47 (82)
406 1nlf_A Regulatory protein REPA 24.3 1.2E+02 0.0041 28.0 6.3 52 58-109 29-87 (279)
407 3l0o_A Transcription terminati 24.2 76 0.0026 31.6 4.8 29 58-86 174-202 (427)
408 2v3c_C SRP54, signal recogniti 24.2 64 0.0022 32.5 4.4 34 62-98 102-135 (432)
409 2qmh_A HPR kinase/phosphorylas 23.9 35 0.0012 30.4 2.2 22 61-82 36-57 (205)
410 4ag6_A VIRB4 ATPase, type IV s 23.9 1.1E+02 0.0037 30.1 6.2 59 501-562 283-347 (392)
411 2k0z_A Uncharacterized protein 23.7 71 0.0024 24.8 3.8 38 513-550 54-91 (110)
412 1p9r_A General secretion pathw 23.6 1.2E+02 0.0042 30.2 6.4 51 40-96 150-201 (418)
413 3trf_A Shikimate kinase, SK; a 23.5 56 0.0019 27.9 3.5 24 60-83 6-29 (185)
414 2ga8_A Hypothetical 39.9 kDa p 23.5 1.1E+02 0.0037 29.9 5.7 28 57-84 20-49 (359)
415 2qe7_A ATP synthase subunit al 23.4 1.9E+02 0.0064 29.6 7.7 50 58-111 161-214 (502)
416 3pg5_A Uncharacterized protein 23.3 44 0.0015 32.7 3.0 31 63-96 6-36 (361)
417 3iij_A Coilin-interacting nucl 23.3 72 0.0025 27.1 4.2 25 59-83 11-35 (180)
418 2ck3_A ATP synthase subunit al 23.0 2.7E+02 0.0092 28.6 8.8 64 47-111 151-222 (510)
419 2xzl_A ATP-dependent helicase 22.6 1.1E+02 0.0039 33.5 6.4 51 497-547 385-436 (802)
420 1tq1_A AT5G66040, senescence-a 22.4 67 0.0023 25.8 3.5 38 513-550 80-118 (129)
421 1yrb_A ATP(GTP)binding protein 22.3 89 0.003 28.4 4.9 32 62-97 17-48 (262)
422 3sxu_A DNA polymerase III subu 22.0 97 0.0033 26.0 4.5 39 498-536 22-60 (150)
423 1vee_A Proline-rich protein fa 21.9 99 0.0034 25.0 4.5 38 513-550 72-110 (134)
424 1vyx_A ORF K3, K3RING; zinc-bi 21.1 24 0.00082 24.4 0.4 33 372-404 2-39 (60)
425 1qxn_A SUD, sulfide dehydrogen 21.1 76 0.0026 25.9 3.6 38 513-550 80-118 (137)
426 3p32_A Probable GTPase RV1496/ 20.9 2.5E+02 0.0087 27.0 8.1 25 62-86 82-106 (355)
427 3d1p_A Putative thiosulfate su 20.8 87 0.003 25.4 4.0 37 514-550 90-127 (139)
428 1urh_A 3-mercaptopyruvate sulf 20.8 95 0.0032 28.8 4.7 49 502-550 72-123 (280)
429 3gbj_A KIF13B protein; kinesin 20.8 79 0.0027 30.9 4.2 25 54-78 87-112 (354)
430 4h86_A Peroxiredoxin type-2; o 20.7 3.4E+02 0.012 23.9 7.8 32 513-544 67-110 (199)
431 3dmp_A Uracil phosphoribosyltr 20.6 2.6E+02 0.009 24.9 7.3 60 59-121 129-189 (217)
432 2wjy_A Regulator of nonsense t 20.4 1.5E+02 0.0053 32.4 6.9 51 497-547 381-432 (800)
433 2vhj_A Ntpase P4, P4; non- hyd 20.2 64 0.0022 31.1 3.3 21 62-82 126-146 (331)
434 1kht_A Adenylate kinase; phosp 20.1 73 0.0025 27.2 3.6 26 60-85 4-29 (192)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-56 Score=500.69 Aligned_cols=398 Identities=35% Similarity=0.609 Sum_probs=316.6
Q ss_pred CCchh-hhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHH
Q psy13010 33 QPGLF-RGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMER 111 (573)
Q Consensus 33 ~p~~l-~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~ 111 (573)
+|+.+ ..+|+|||++|++||...+..+.+|||+|+||+|||+++++++..+....+..+|+|||||.+++.||.+||.+
T Consensus 228 ~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~ 307 (800)
T 3mwy_W 228 QPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEK 307 (800)
T ss_dssp CCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHH
T ss_pred CCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHH
Confidence 34443 45999999999999999999999999999999999999999999887666667899999999999999999999
Q ss_pred HCCCceEEeecCChhHHHHHHHHhhhccc---ccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHH
Q psy13010 112 FVPDFKVVPYWGSPQERKILRQFWDMKNL---HTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRW 188 (573)
Q Consensus 112 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~ 188 (573)
|+|+.++++|.|....+..++.+....+. ......++|+|+||+++..+...+..++|++||+||+|++||..+..+
T Consensus 308 ~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~ 387 (800)
T 3mwy_W 308 WAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLY 387 (800)
T ss_dssp HSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHH
T ss_pred HCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHH
Confidence 99999999999999888777665422211 134578899999999999999999999999999999999999999999
Q ss_pred HHHHhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccHHHHHHHHHhhccceee
Q psy13010 189 KLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLR 268 (573)
Q Consensus 189 ~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~r 268 (573)
+++..+++.++|+|||||++|++.|||++++||.|+.+.....|.-... ..........|+.+++++++|
T Consensus 388 ~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~----------~~~~~~~~~~L~~~l~p~~lR 457 (800)
T 3mwy_W 388 ESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ----------DEEQEEYIHDLHRRIQPFILR 457 (800)
T ss_dssp HHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CC----------TTHHHHHHHHHHHTTGGGEEE
T ss_pred HHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhccccc----------chhHHHHHHHHHHHHhHHHhh
Confidence 9999999999999999999999999999999999999977655532111 111345678899999999999
Q ss_pred ccccchhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHHHHHHHHhcCCcccccc
Q psy13010 269 RIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFER 348 (573)
Q Consensus 269 r~k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~c~hp~l~~~ 348 (573)
|++.++...||++.+..+.|+||+.|++.|+.+........ ..+. ......++..++.||++|+||.++..
T Consensus 458 R~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l----~~~~-----~~~~~~~l~~l~~Lrk~~~hp~l~~~ 528 (800)
T 3mwy_W 458 RLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSAL----TAGA-----KGGHFSLLNIMNELKKASNHPYLFDN 528 (800)
T ss_dssp CCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC-------------------CTHHHHHHHHHHHHHCGGGSSS
T ss_pred hhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHH----hhcc-----ccchhhHHHHHHHHHHHhcChhhhcc
Confidence 99999999999999999999999999999999876532110 0000 11123578899999999999999853
Q ss_pred ccccCccccchhhhhhhhccchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccCCchhhhhhhhHhhhhccC
Q psy13010 349 RDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSS 428 (573)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (573)
........ ..+
T Consensus 529 ~~~~~~~~-------------------------~~~-------------------------------------------- 539 (800)
T 3mwy_W 529 AEERVLQK-------------------------FGD-------------------------------------------- 539 (800)
T ss_dssp HHHHHCCC-------------------------C----------------------------------------------
T ss_pred hHHHHHHh-------------------------ccc--------------------------------------------
Confidence 11100000 000
Q ss_pred CCCccccchhHHHHHHHHHHHHHhhcCCchhhhhhcccCcccccccccccchhhHHHHhhccccccccccccHHHHHHHH
Q psy13010 429 SGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLL 508 (573)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~li 508 (573)
+ ..... ......+..|+|+.+|.+++
T Consensus 540 --~---------------------------------------------~~~~~-------~~~~~l~~~s~K~~~L~~lL 565 (800)
T 3mwy_W 540 --G---------------------------------------------KMTRE-------NVLRGLIMSSGKMVLLDQLL 565 (800)
T ss_dssp -------------------------------------------------CCSH-------HHHHHHHHTCHHHHHHHHHH
T ss_pred --c---------------------------------------------cccHH-------HHHHHhhhcChHHHHHHHHH
Confidence 0 00000 00011234689999999999
Q ss_pred HHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCC-ceEEEe
Q psy13010 509 KRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTH-QSVGLL 572 (573)
Q Consensus 509 ~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~-~~v~Ll 572 (573)
..+...|.||||||||+.++++|+..|...|+.+.+++|+++.++|++++++|++++. ..|||+
T Consensus 566 ~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~Ll 630 (800)
T 3mwy_W 566 TRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLL 630 (800)
T ss_dssp HHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEE
T ss_pred HHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEE
Confidence 9998899999999999999999999999999999999999999999999999998654 345554
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.7e-55 Score=483.05 Aligned_cols=410 Identities=27% Similarity=0.410 Sum_probs=321.9
Q ss_pred CCCCchhhhccHHHHHHHHHHHHHHH-----hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCC----CCCEEEEcCccc
Q psy13010 31 RPQPGLFRGNLKHYQLKGMNWLANLY-----DQGINGILADEMGLGKTVQSIAFLCHIAETYDV----WGPFLIISPAST 101 (573)
Q Consensus 31 ~~~p~~l~~~L~~~Q~~~v~~l~~~~-----~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~----~~~~LIV~P~~l 101 (573)
...|+.+...|+|||++|++||+... ..+.||||+|+||+|||+++++++..+....+. .+++|||||.++
T Consensus 46 ~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sl 125 (644)
T 1z3i_X 46 VVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSL 125 (644)
T ss_dssp EECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHH
T ss_pred EeeChhhhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHH
Confidence 35677888899999999999998876 356678999999999999999999988765432 356999999999
Q ss_pred HHHHHHHHHHHCCC-ceEEeecC-ChhHH-HHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccc
Q psy13010 102 LHNWQQEMERFVPD-FKVVPYWG-SPQER-KILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQ 178 (573)
Q Consensus 102 ~~qW~~el~~~~~~-~~v~~~~g-~~~~~-~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h 178 (573)
+.||.+|+.+|+|. ..++.+.+ +.... ..+..+. ........++|+|+||+++..+...+....|++||+||+|
T Consensus 126 l~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH 202 (644)
T 1z3i_X 126 VRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFI---SQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGH 202 (644)
T ss_dssp HHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHH---CCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGG
T ss_pred HHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHH---HhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECce
Confidence 99999999999875 55555544 43332 2222221 1112234688999999999999888989999999999999
Q ss_pred cccCcchHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccc-----cHH
Q psy13010 179 AIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI-----DER 253 (573)
Q Consensus 179 ~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-----~~~ 253 (573)
++||..+++++++..+.+.++|+|||||++|++.|+|++++||.|+.+++...|.+.|..|+..+....... ...
T Consensus 203 ~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~ 282 (644)
T 1z3i_X 203 RLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQ 282 (644)
T ss_dssp GCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHH
T ss_pred ecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988766554432 235
Q ss_pred HHHHHHHhhccceeeccccchhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHHH
Q psy13010 254 HLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLV 333 (573)
Q Consensus 254 ~~~~l~~~l~~~~~rr~k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 333 (573)
+...|+.++.++++||++.++..+||++.+..+.|+||+.|+++|+.+.+....... ...+ ......+..+
T Consensus 283 ~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~---~~~g------~~~~~~l~~l 353 (644)
T 1z3i_X 283 KLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVES---LQTG------KISVSSLSSI 353 (644)
T ss_dssp HHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGS---SCTT------CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHH---HhcC------ccchhHHHHH
Confidence 577899999999999999999999999999999999999999999999876532111 1111 1234678889
Q ss_pred HHHHHhcCCccccccccccCccccchhhhhhhhccchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccCCch
Q psy13010 334 MQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSP 413 (573)
Q Consensus 334 ~~lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~~~~ 413 (573)
..||++|+||.++........ +. ...+.+.
T Consensus 354 ~~Lrk~c~hp~l~~~~~~~~~--------------------~~--~~~~~~~---------------------------- 383 (644)
T 1z3i_X 354 TSLKKLCNHPALIYEKCLTGE--------------------EG--FDGALDL---------------------------- 383 (644)
T ss_dssp HHHHHHHHCTHHHHHHHHHTC--------------------TT--CTTGGGT----------------------------
T ss_pred HHHHHHhCCHHHHHHHHhccc--------------------ch--hhhHHhh----------------------------
Confidence 999999999998752110000 00 0000000
Q ss_pred hhhhhhhHhhhhccCCCCccccchhHHHHHHHHHHHHHhhcCCchhhhhhcccCcccccccccccchhhHHHHhhccccc
Q psy13010 414 ALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLT 493 (573)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (573)
.| . . ......
T Consensus 384 ------------------------------------------~~-----------~-----~------------~~~~~~ 393 (644)
T 1z3i_X 384 ------------------------------------------FP-----------Q-----N------------YSTKAV 393 (644)
T ss_dssp ------------------------------------------SC-----------S-----S------------CCSSSC
T ss_pred ------------------------------------------cc-----------c-----c------------cccccc
Confidence 00 0 0 000011
Q ss_pred cccccccHHHHHHHHHHHHh-CCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCc-eEEE
Q psy13010 494 LVYDAGKLSVLDDLLKRLKA-SGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQ-SVGL 571 (573)
Q Consensus 494 ~~~~s~Kl~~l~~li~~~~~-~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~-~v~L 571 (573)
....|+|+..+..++..+.. .+.|+||||+|+.++++|+..|...|+.+.+++|+++.++|++++++|++++.. .|+|
T Consensus 394 ~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L 473 (644)
T 1z3i_X 394 EPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFM 473 (644)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEE
T ss_pred CcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Confidence 12358899999999988765 589999999999999999999999999999999999999999999999987664 3555
Q ss_pred e
Q psy13010 572 L 572 (573)
Q Consensus 572 l 572 (573)
+
T Consensus 474 ~ 474 (644)
T 1z3i_X 474 L 474 (644)
T ss_dssp E
T ss_pred E
Confidence 4
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.2e-52 Score=448.36 Aligned_cols=371 Identities=27% Similarity=0.525 Sum_probs=318.0
Q ss_pred CccCCCCchhhhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHH
Q psy13010 28 EVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQ 107 (573)
Q Consensus 28 ~~~~~~p~~l~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~ 107 (573)
...++ |..++..|+|||++++.||......+.+|||+|+||+|||+++++++..+... +..+++|||||.+++.||.+
T Consensus 26 ~~~~~-p~~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P~~l~~qw~~ 103 (500)
T 1z63_A 26 FQLLE-PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE-NELTPSLVICPLSVLKNWEE 103 (500)
T ss_dssp CCCCC-CCSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT-TCCSSEEEEECSTTHHHHHH
T ss_pred CccCC-ChhhhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc-CCCCCEEEEccHHHHHHHHH
Confidence 33444 88888999999999999998888888899999999999999999999988765 33479999999999999999
Q ss_pred HHHHHCCCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHH
Q psy13010 108 EMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMR 187 (573)
Q Consensus 108 el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~ 187 (573)
|+.+|+|+.++.++.|.... .....++|+|+||+++.++.. +....|++||+||+|+++|..+.+
T Consensus 104 e~~~~~~~~~v~~~~g~~~~--------------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~ 168 (500)
T 1z63_A 104 ELSKFAPHLRFAVFHEDRSK--------------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKI 168 (500)
T ss_dssp HHHHHCTTSCEEECSSSTTS--------------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHH
T ss_pred HHHHHCCCceEEEEecCchh--------------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHH
Confidence 99999999999999887521 122567899999999988755 777899999999999999999999
Q ss_pred HHHHHhcccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccHHHHHHHHHhhcccee
Q psy13010 188 WKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFML 267 (573)
Q Consensus 188 ~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (573)
++++..+.+.++|+|||||++|++.|+|++++||.|+.+++...|.+.|..++..+ +......|+.+++++++
T Consensus 169 ~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~-------~~~~~~~l~~~l~~~~l 241 (500)
T 1z63_A 169 FKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKG-------DNMAKEELKAIISPFIL 241 (500)
T ss_dssp HHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTT-------CHHHHHHHHHHHTTTEE
T ss_pred HHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccc-------cHHHHHHHHHHHhhHee
Confidence 99999999999999999999999999999999999999999999999999887653 44567789999999999
Q ss_pred eccccc--hhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHHHHHHHHhcCCccc
Q psy13010 268 RRIKKD--VENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPEL 345 (573)
Q Consensus 268 rr~k~~--~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~c~hp~l 345 (573)
||++.+ +..+||+..+..+.|+|++.|++.|+.+.+..... .... ........++..+.+||++|+||.+
T Consensus 242 rr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~----~~~~----~~~~~~~~~~~~l~~lr~~~~~p~l 313 (500)
T 1z63_A 242 RRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNN----IDSV----TGIKRKGMILSTLLKLKQIVDHPAL 313 (500)
T ss_dssp CCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTT----TTTC----CTHHHHHHHHHHHHHHHHHTTCTHH
T ss_pred eecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHH----HHhh----hcccchHHHHHHHHHHHHHhCCHHH
Confidence 999987 55689999999999999999999999887764211 0010 1122345678899999999999988
Q ss_pred cccccccCccccchhhhhhhhccchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccCCchhhhhhhhHhhhh
Q psy13010 346 FERRDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLI 425 (573)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 425 (573)
+....
T Consensus 314 ~~~~~--------------------------------------------------------------------------- 318 (500)
T 1z63_A 314 LKGGE--------------------------------------------------------------------------- 318 (500)
T ss_dssp HHCSC---------------------------------------------------------------------------
T ss_pred hcCcc---------------------------------------------------------------------------
Confidence 74100
Q ss_pred ccCCCCccccchhHHHHHHHHHHHHHhhcCCchhhhhhcccCcccccccccccchhhHHHHhhccccccccccccHHHHH
Q psy13010 426 HSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLD 505 (573)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~ 505 (573)
.....|+|+..+.
T Consensus 319 -------------------------------------------------------------------~~~~~s~K~~~l~ 331 (500)
T 1z63_A 319 -------------------------------------------------------------------QSVRRSGKMIRTM 331 (500)
T ss_dssp -------------------------------------------------------------------CCSTTCHHHHHHH
T ss_pred -------------------------------------------------------------------chhhcchhHHHHH
Confidence 0122478999999
Q ss_pred HHHHHHHhCCCeEEEEecchhHHHHHHHHHHhC-CCeEEEecCCCCHHHHHHHHhCcCCCCCceEEEe
Q psy13010 506 DLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYR-KYRFMRLDGSSKISERRDMFAVPGILTHQSVGLL 572 (573)
Q Consensus 506 ~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~-gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~Ll 572 (573)
+++.++..++.|+||||+|..+++.|.+.|... |+.+..++|+++.++|++++++|++++..+|+|+
T Consensus 332 ~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~ 399 (500)
T 1z63_A 332 EIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVL 399 (500)
T ss_dssp HHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEE
T ss_pred HHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEE
Confidence 999999889999999999999999999999986 9999999999999999999999999877776654
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=4.5e-35 Score=333.79 Aligned_cols=360 Identities=19% Similarity=0.184 Sum_probs=260.4
Q ss_pred hhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCce
Q psy13010 38 RGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFK 117 (573)
Q Consensus 38 ~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~ 117 (573)
...|+|||++++.|++. ..+.++||+|+||+|||+++++++..+...+ ..+++|||||.+++.||..|+.+++ +.+
T Consensus 151 ~~~LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~ 226 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQLLSG-AAERVLIIVPETLQHQWLVEMLRRF-NLR 226 (968)
T ss_dssp SSCCCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCCCEEEECCTTTHHHHHHHHHHHS-CCC
T ss_pred CCCCcHHHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEeCHHHHHHHHHHHHHHh-CCC
Confidence 46799999999999866 3366789999999999999999998887764 3468999999999999999999888 677
Q ss_pred EEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH---hhhhccCccEEEEcccccccCcchH---HHHHH
Q psy13010 118 VVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF---KYFNRIKWQYLILDEAQAIKSSSSM---RWKLL 191 (573)
Q Consensus 118 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~---~~l~~~~~~~vIiDE~h~~kn~~s~---~~~~~ 191 (573)
+.++.|....... .........++|+|+||+.+.+.. ..+....|++||+||+|+++|..+. .++++
T Consensus 227 v~v~~~~~~~~~~-------~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l 299 (968)
T 3dmq_A 227 FALFDDERYAEAQ-------HDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAI 299 (968)
T ss_dssp CEECCHHHHHHHH-------HTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHH
T ss_pred EEEEccchhhhhh-------hhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHH
Confidence 7777765432211 111233356899999999997753 4466779999999999999987644 48888
Q ss_pred Hhc--ccCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhh------cc-c---------------
Q psy13010 192 LGF--SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHA------EN-K--------------- 247 (573)
Q Consensus 192 ~~l--~~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~------~~-~--------------- 247 (573)
..+ ++.++|+|||||++|+..|+|++++|+.|+.+++...|.+.+........ .. .
T Consensus 300 ~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~ 379 (968)
T 3dmq_A 300 EQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGE 379 (968)
T ss_dssp HHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCT
T ss_pred HHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcc
Confidence 888 67789999999999999999999999999999999999877643221000 00 0
Q ss_pred --------------ccccHHHHHHHHHhh-----ccceeeccccchhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHH
Q psy13010 248 --------------TSIDERHLSRLHMIL-----KPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIE 308 (573)
Q Consensus 248 --------------~~~~~~~~~~l~~~l-----~~~~~rr~k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~ 308 (573)
..........+..++ ...++|.++..+. .+|++....+.+++++.++..|......
T Consensus 380 ~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~-~~p~r~~~~~~l~~~~~~~~~~~~~~~~---- 454 (968)
T 3dmq_A 380 QDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVK-GFPKRELHTIKLPLPTQYQTAIKVSGIM---- 454 (968)
T ss_dssp TCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC-CCCCCCCCEEEECCCHHHHHHHHHHHHT----
T ss_pred hhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhc-ccChhheEeeecCCCHHHHHHHHHHhhh----
Confidence 000001122333333 3566777777775 6999999999999999998888643110
Q ss_pred HhhhhcCCCccccchhhHHHHHHHHHHHHHhcCCccccccccccCccccchhhhhhhhccchhhccccCCCCCCCCCCCC
Q psy13010 309 DLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRD 388 (573)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (573)
...... ... ...+.+|.......
T Consensus 455 -----~~~~~~---~~~-----------~~~~l~pe~~~~~l-------------------------------------- 477 (968)
T 3dmq_A 455 -----GARKSA---EDR-----------ARDMLYPERIYQEF-------------------------------------- 477 (968)
T ss_dssp -----TCCSSG---GGG-----------THHHHCSGGGTTTT--------------------------------------
T ss_pred -----hhhhhh---HHH-----------HhhhcChHHHHHHh--------------------------------------
Confidence 000000 000 00011121111000
Q ss_pred CcccCCCCCCCCcccccccccCCchhhhhhhhHhhhhccCCCCccccchhHHHHHHHHHHHHHhhcCCchhhhhhcccCc
Q psy13010 389 PVILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAP 468 (573)
Q Consensus 389 ~~~~~c~h~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (573)
T Consensus 478 -------------------------------------------------------------------------------- 477 (968)
T 3dmq_A 478 -------------------------------------------------------------------------------- 477 (968)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccchhhHHHHhhccccccccccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHh-CCCeEEEecC
Q psy13010 469 LAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVY-RKYRFMRLDG 547 (573)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~-~gi~~~~i~G 547 (573)
..........++|+.++.+++.. ..+.|+||||++..+++.|.+.|.. .|+.+..++|
T Consensus 478 -------------------~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG 536 (968)
T 3dmq_A 478 -------------------EGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHE 536 (968)
T ss_dssp -------------------TSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECT
T ss_pred -------------------hhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeC
Confidence 00001122347799999999987 5688999999999999999999995 5999999999
Q ss_pred CCCHHHHHHHHhCcCCCC-CceEEE
Q psy13010 548 SSKISERRDMFAVPGILT-HQSVGL 571 (573)
Q Consensus 548 ~~~~~~R~~~i~~F~~~~-~~~v~L 571 (573)
+++.++|++++++|++++ .+.|++
T Consensus 537 ~~~~~~R~~~l~~F~~g~~~~~vLv 561 (968)
T 3dmq_A 537 GMSIIERDRAAAWFAEEDTGAQVLL 561 (968)
T ss_dssp TSCTTHHHHHHHHHHSTTSSCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCcccEEE
Confidence 999999999999999886 455554
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=2.6e-28 Score=259.97 Aligned_cols=168 Identities=15% Similarity=0.169 Sum_probs=128.8
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc-ccHHHHHHHHHHHC--CC
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA-STLHNWQQEMERFV--PD 115 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~-~l~~qW~~el~~~~--~~ 115 (573)
-+|+|||.+++.+++. + +++++++||+|||+++++++...... ..+++|||||. .++.||.+++.+|+ +.
T Consensus 8 ~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~~--~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLTK--YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp HCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHHH--SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 3799999999987754 3 89999999999999999888877652 23689999995 89999999999998 55
Q ss_pred ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCcchHHH--HHH
Q psy13010 116 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSSSSMRW--KLL 191 (573)
Q Consensus 116 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~~s~~~--~~~ 191 (573)
.++.++.|........... ..++|+|+||+.+..... .+...+|++||+||+|++++..+... +.+
T Consensus 81 ~~v~~~~g~~~~~~~~~~~----------~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~ 150 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSKAW----------ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREY 150 (494)
T ss_dssp GGEEEECSCSCHHHHHHHH----------HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred hheEEeeCCcchhhhhhhc----------cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHH
Confidence 6888888875543322111 246899999999987654 45566899999999999987533221 111
Q ss_pred Hh-cccCcEEEEeccCCCCCHHHHHHHHHhhCCC
Q psy13010 192 LG-FSCRNRLLLSGTPIQNSMAELWALLHFIMPS 224 (573)
Q Consensus 192 ~~-l~~~~~~lLTgTP~~n~~~el~~ll~~L~~~ 224 (573)
.. ....++++|||||. ++..+++.++.++...
T Consensus 151 ~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~ 183 (494)
T 1wp9_A 151 KRQAKNPLVIGLTASPG-STPEKIMEVINNLGIE 183 (494)
T ss_dssp HHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCC
T ss_pred HhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChh
Confidence 11 24678999999999 7788888888888543
No 6
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.92 E-value=6.8e-24 Score=241.50 Aligned_cols=175 Identities=14% Similarity=0.181 Sum_probs=118.9
Q ss_pred CCCCchh--hhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCC--CCCEEEEcC-cccHHHH
Q psy13010 31 RPQPGLF--RGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDV--WGPFLIISP-ASTLHNW 105 (573)
Q Consensus 31 ~~~p~~l--~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~--~~~~LIV~P-~~l~~qW 105 (573)
+..|..+ ...|+|||.+++.++.. +..+|+++++|+|||++++..+.......+. .+++|||+| ..++.||
T Consensus 237 ~~~~~~l~~~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~ 312 (936)
T 4a2w_A 237 IGKPPPVYETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQ 312 (936)
T ss_dssp -----------CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHH
T ss_pred hcCcccccCCCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHH
Confidence 4455555 34799999999987744 6789999999999999987777665544321 468999999 6699999
Q ss_pred HHHHHHHCC--CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh--h-hccCccEEEEcccccc
Q psy13010 106 QQEMERFVP--DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--F-NRIKWQYLILDEAQAI 180 (573)
Q Consensus 106 ~~el~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~--l-~~~~~~~vIiDE~h~~ 180 (573)
.+++.++++ +.++.++.|............ ..++|+|+|++.+...... + ....|++||+||+|++
T Consensus 313 ~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~---------~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~ 383 (936)
T 4a2w_A 313 KNVFKHHFERQGYSVQGISGENFSNVSVEKVI---------EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNT 383 (936)
T ss_dssp HHHHHHHHHTTTCCEEEECCC-----CCHHHH---------HHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGC
T ss_pred HHHHHHHhcccCceEEEEECCcchhhHHHHhc---------cCCCEEEecHHHHHHHHHcCccccccCCCEEEEECcccc
Confidence 999999986 688888888764332111111 3468999999999875432 2 2346899999999999
Q ss_pred cCcchHHHHHHHhc-c--------cCcEEEEeccCCCCCHHHHHHHHH
Q psy13010 181 KSSSSMRWKLLLGF-S--------CRNRLLLSGTPIQNSMAELWALLH 219 (573)
Q Consensus 181 kn~~s~~~~~~~~l-~--------~~~~~lLTgTP~~n~~~el~~ll~ 219 (573)
.+..+ ....+..+ . ...+++|||||..++..++...+.
T Consensus 384 ~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~ 430 (936)
T 4a2w_A 384 TGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIE 430 (936)
T ss_dssp STTCH-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHH
T ss_pred CCCcc-HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHH
Confidence 88654 22222222 1 256899999999887655554433
No 7
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.92 E-value=1.6e-23 Score=226.96 Aligned_cols=164 Identities=13% Similarity=0.198 Sum_probs=119.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCC--CCCEEEEcCc-ccHHHHHHHHHHHCC--
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDV--WGPFLIISPA-STLHNWQQEMERFVP-- 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~--~~~~LIV~P~-~l~~qW~~el~~~~~-- 114 (573)
+|+|||.+++.++. .+..+++++++|+|||++++..+......... .+++|||||. .++.||.+++.++++
T Consensus 4 ~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAK----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHh----CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 68999999998775 36789999999999999988777666554321 4689999995 899999999999875
Q ss_pred CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh--h-hccCccEEEEcccccccCcchHHHHHH
Q psy13010 115 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--F-NRIKWQYLILDEAQAIKSSSSMRWKLL 191 (573)
Q Consensus 115 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~--l-~~~~~~~vIiDE~h~~kn~~s~~~~~~ 191 (573)
+.++..+.|............ ..++|+++|++.+...... + ....|++||+||+|++.+..+......
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~---------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~ 150 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHII---------EDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMF 150 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHH---------HHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHH
T ss_pred CcEEEEEcCCCcchhhHHHHh---------cCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHH
Confidence 678888888764332222111 2468999999999776543 2 334689999999999988654222111
Q ss_pred Hhc---------ccCcEEEEeccCCCCCHHHHHH
Q psy13010 192 LGF---------SCRNRLLLSGTPIQNSMAELWA 216 (573)
Q Consensus 192 ~~l---------~~~~~~lLTgTP~~n~~~el~~ 216 (573)
..+ ...++++|||||..++..++..
T Consensus 151 ~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~ 184 (555)
T 3tbk_A 151 RYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEE 184 (555)
T ss_dssp HHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHH
T ss_pred HHHHhhhccccCCCCeEEEEecCcccCccccHHH
Confidence 222 1246999999999987555443
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.92 E-value=1.4e-23 Score=227.64 Aligned_cols=162 Identities=14% Similarity=0.186 Sum_probs=115.0
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCC--CCCEEEEcCc-ccHHHHHHHHHHHCC-
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDV--WGPFLIISPA-STLHNWQQEMERFVP- 114 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~--~~~~LIV~P~-~l~~qW~~el~~~~~- 114 (573)
-+|+|||.+++.++.. +..+++++++|+|||++++..+.......+. .+++|||+|. .++.||.+++.++++
T Consensus 6 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4699999999987754 6789999999999999988777666554321 4689999995 899999999999976
Q ss_pred -CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh--h-hccCccEEEEcccccccCcchHHHHH
Q psy13010 115 -DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--F-NRIKWQYLILDEAQAIKSSSSMRWKL 190 (573)
Q Consensus 115 -~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~--l-~~~~~~~vIiDE~h~~kn~~s~~~~~ 190 (573)
+.++..+.|............ ..++|+|+|++.+...... + ....|++||+||+|++.+..+. ...
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~---------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~-~~~ 151 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVI---------EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPY-NVL 151 (556)
T ss_dssp GTCCEEECCCC-----CHHHHH---------HHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHH-HHH
T ss_pred cCceEEEEeCCCCcchhHHHhh---------CCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchH-HHH
Confidence 688888888764332222111 2467999999999875533 3 3446899999999999876542 222
Q ss_pred H-Hhc--------ccCcEEEEeccCCCCCHHHH
Q psy13010 191 L-LGF--------SCRNRLLLSGTPIQNSMAEL 214 (573)
Q Consensus 191 ~-~~l--------~~~~~~lLTgTP~~n~~~el 214 (573)
+ ..+ ...++++|||||..++..++
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~ 184 (556)
T 4a2p_A 152 MTRYLEQKFNSASQLPQILGLTASVGVGNAKNI 184 (556)
T ss_dssp HHHHHHHHHCC---CCEEEEEESCCCCTTCSSH
T ss_pred HHHHHHhhhcccCCCCeEEEEeCCcccCchhhH
Confidence 2 222 12569999999988765443
No 9
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.92 E-value=3.9e-25 Score=234.89 Aligned_cols=193 Identities=18% Similarity=0.253 Sum_probs=148.4
Q ss_pred hhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc-ccHHHHHHHHHHHCCCc
Q psy13010 38 RGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA-STLHNWQQEMERFVPDF 116 (573)
Q Consensus 38 ~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~-~l~~qW~~el~~~~~~~ 116 (573)
...|+|||.+++.++.. +.+++++++||+|||++++.++... .+++|||||. .++.||.+++.+| +.
T Consensus 91 ~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~~ 158 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (472)
T ss_dssp CCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--CG
T ss_pred CCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--CC
Confidence 34799999999986543 4568999999999999998887765 2589999996 9999999999984 56
Q ss_pred e-EEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcc
Q psy13010 117 K-VVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFS 195 (573)
Q Consensus 117 ~-v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~ 195 (573)
+ +.++.|... ...+|+|+||+.+......+. .+|++||+||+|++.+.... ..+..+.
T Consensus 159 ~~v~~~~g~~~------------------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~--~~~~~~~ 217 (472)
T 2fwr_A 159 EYVGEFSGRIK------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV--QIAQMSI 217 (472)
T ss_dssp GGEEEBSSSCB------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--HHHHTCC
T ss_pred cceEEECCCcC------------------CcCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH--HHHHhcC
Confidence 6 888877543 235799999999987766553 36999999999999987643 3555567
Q ss_pred cCcEEEEeccCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhcccccccHHHHHHHHHhhccceeeccccchh
Q psy13010 196 CRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVE 275 (573)
Q Consensus 196 ~~~~~lLTgTP~~n~~~el~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~k~~~~ 275 (573)
+.++++|||||.+++..+ ..+..++.+.+.+....++.
T Consensus 218 ~~~~l~lSATp~~~~~~~------------------------------------------~~l~~~~~~~~~~~~~~~l~ 255 (472)
T 2fwr_A 218 APFRLGLTATFEREDGRH------------------------------------------EILKEVVGGKVFELFPDSLA 255 (472)
T ss_dssp CSEEEEEESCCCCTTSGG------------------------------------------GSHHHHTCCEEEECCHHHHT
T ss_pred CCeEEEEecCccCCCCHH------------------------------------------HHHHHHhCCeEeecCHHHHh
Confidence 889999999999755221 12344566666666666653
Q ss_pred c-cCCCceEEEEEcCCCHHHHHHHHHHHHHH
Q psy13010 276 N-ELSDKIEIMVYCPLTSRQKLLYSALKKKI 305 (573)
Q Consensus 276 ~-~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~ 305 (573)
. .+++.....+.+++++.+...|+.+...+
T Consensus 256 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (472)
T 2fwr_A 256 GKHLAKYTIKRIFVPLAEDERVEYEKREKVY 286 (472)
T ss_dssp SCCCCSEEECCEEECCCHHHHHHTTTTTHHH
T ss_pred cCcCCCeEEEEEEcCCCHHHHHHHHHHHHHH
Confidence 3 37788888899999999999998776543
No 10
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.92 E-value=1.8e-23 Score=235.57 Aligned_cols=165 Identities=14% Similarity=0.186 Sum_probs=117.5
Q ss_pred hhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCC--CCCEEEEcC-cccHHHHHHHHHHHCC
Q psy13010 38 RGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDV--WGPFLIISP-ASTLHNWQQEMERFVP 114 (573)
Q Consensus 38 ~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~--~~~~LIV~P-~~l~~qW~~el~~~~~ 114 (573)
...|+|||.+++.++.. +..+|+++++|+|||++++..+.......+. .+++||||| ..++.||.+++.++++
T Consensus 246 ~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 34799999999987643 6789999999999999988777766554321 468999999 6799999999999987
Q ss_pred --CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh--h-hccCccEEEEcccccccCcchHHHH
Q psy13010 115 --DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--F-NRIKWQYLILDEAQAIKSSSSMRWK 189 (573)
Q Consensus 115 --~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~--l-~~~~~~~vIiDE~h~~kn~~s~~~~ 189 (573)
+.++..+.|............ ..++|+|+|++.+...... + ....|++||+||+|++.+..+ ...
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~~---------~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~ 391 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKVI---------EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNV 391 (797)
T ss_dssp GGTCCEEEECCC-----CHHHHH---------HTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHH
T ss_pred cCCceEEEEeCCcchhhhHHHhh---------CCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-HHH
Confidence 688988888764333222211 3568999999999775432 2 234689999999999987654 222
Q ss_pred HHHhc-c--------cCcEEEEeccCCCCCHHHHHH
Q psy13010 190 LLLGF-S--------CRNRLLLSGTPIQNSMAELWA 216 (573)
Q Consensus 190 ~~~~l-~--------~~~~~lLTgTP~~n~~~el~~ 216 (573)
.+..+ . ..++++|||||..++..++..
T Consensus 392 i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~ 427 (797)
T 4a2q_A 392 LMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEE 427 (797)
T ss_dssp HHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHH
T ss_pred HHHHHHHHhhccCCCCCeEEEEcCCccccccccHHH
Confidence 22222 1 256899999998876544443
No 11
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.89 E-value=1.5e-21 Score=217.48 Aligned_cols=160 Identities=16% Similarity=0.202 Sum_probs=116.2
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcC--CCCCEEEEcC-cccHHHHHHHHHHHCC-
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYD--VWGPFLIISP-ASTLHNWQQEMERFVP- 114 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~--~~~~~LIV~P-~~l~~qW~~el~~~~~- 114 (573)
..|+|||.+++.+++. +.++|+++++|+|||++++..+.......+ ..+++|||+| ..++.||.+++.++++
T Consensus 12 ~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 12 FKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp -CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 3799999999988754 678999999999999998877765554432 1268999999 5999999999999986
Q ss_pred -CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh--h-hccCccEEEEcccccccCcchHHHHH
Q psy13010 115 -DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--F-NRIKWQYLILDEAQAIKSSSSMRWKL 190 (573)
Q Consensus 115 -~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~--l-~~~~~~~vIiDE~h~~kn~~s~~~~~ 190 (573)
+.++..+.|...........+ ...+|+++|++.+...... + ....|++||+||+|++.+..+.....
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~~~---------~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~ 158 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQIV---------ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIM 158 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHHHH---------HTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHH
T ss_pred CCceEEEEeCCccccccHHHhc---------cCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHH
Confidence 678888887643221111111 2468999999999876542 2 34578999999999998765432222
Q ss_pred HHhc---------ccCcEEEEeccCCCCCH
Q psy13010 191 LLGF---------SCRNRLLLSGTPIQNSM 211 (573)
Q Consensus 191 ~~~l---------~~~~~~lLTgTP~~n~~ 211 (573)
...+ ...++++|||||..++.
T Consensus 159 ~~~l~~~~~~~~~~~~~il~LTATp~~~~~ 188 (696)
T 2ykg_A 159 FNYLDQKLGGSSGPLPQVIGLTASVGVGDA 188 (696)
T ss_dssp HHHHHHHHTTCCSCCCEEEEEESCCCCSSC
T ss_pred HHHHHHhhcccCCCCCeEEEEeCccccCcc
Confidence 1111 34678999999996553
No 12
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.89 E-value=3.4e-22 Score=214.36 Aligned_cols=163 Identities=17% Similarity=0.212 Sum_probs=118.9
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHH--CCC
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERF--VPD 115 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~--~~~ 115 (573)
..|+|||.+++.+++. +.++++++++|+|||.+++.++......++ +++||||| ..|+.||.+++.++ +++
T Consensus 112 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp ECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHCS--SEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCCC--CeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 3899999999998765 367899999999999999877776665432 48999999 57889999999998 555
Q ss_pred ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhc-
Q psy13010 116 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF- 194 (573)
Q Consensus 116 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l- 194 (573)
..+..+.|....... .....+|+|+|++.+....... -..|++||+||+|++.+.. ..+.+..+
T Consensus 186 ~~v~~~~~~~~~~~~------------~~~~~~I~i~T~~~l~~~~~~~-~~~~~liIiDE~H~~~~~~--~~~il~~~~ 250 (510)
T 2oca_A 186 AMIKKIGGGASKDDK------------YKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGKS--ISSIISGLN 250 (510)
T ss_dssp GGEEECGGGCCTTGG------------GCTTCSEEEEEHHHHTTSCGGG-GGGEEEEEEETGGGCCHHH--HHHHGGGCT
T ss_pred cceEEEecCCccccc------------cccCCcEEEEeHHHHhhchhhh-hhcCCEEEEECCcCCCccc--HHHHHHhcc
Confidence 677777665332111 1256789999999887653322 2368999999999998732 33344566
Q ss_pred ccCcEEEEeccCCCCCHHHHHHHHHhhCC
Q psy13010 195 SCRNRLLLSGTPIQNSMAELWALLHFIMP 223 (573)
Q Consensus 195 ~~~~~~lLTgTP~~n~~~el~~ll~~L~~ 223 (573)
.+.++++||||| .+...+++.+..+.++
T Consensus 251 ~~~~~l~lSATp-~~~~~~~~~~~~~~~~ 278 (510)
T 2oca_A 251 NCMFKFGLSGSL-RDGKANIMQYVGMFGE 278 (510)
T ss_dssp TCCEEEEEESCG-GGCSSCHHHHHHHHCS
T ss_pred cCcEEEEEEeCC-CCCcccHHHhHHhhCC
Confidence 567899999999 4444445555554433
No 13
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=224.47 Aligned_cols=172 Identities=16% Similarity=0.218 Sum_probs=118.1
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhc---CCCCCEEEEcC-cccHHHH-HHHHHHHC
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY---DVWGPFLIISP-ASTLHNW-QQEMERFV 113 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~---~~~~~~LIV~P-~~l~~qW-~~el~~~~ 113 (573)
-.|+|||.+++.++++ +.++|+++++|+|||++++..+....... +..+++|||+| ..|+.|| .+++.+++
T Consensus 6 ~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 3699999999987755 67899999999999999987776654332 22258999999 5689999 99999998
Q ss_pred CC-ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH--------hhhhccCccEEEEcccccccCcc
Q psy13010 114 PD-FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF--------KYFNRIKWQYLILDEAQAIKSSS 184 (573)
Q Consensus 114 ~~-~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~--------~~l~~~~~~~vIiDE~h~~kn~~ 184 (573)
+. .++..+.|............ ...+|+|+|++.+.... ..+....|++||+||+|++....
T Consensus 82 ~~~~~v~~~~g~~~~~~~~~~~~---------~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~ 152 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISFPEVV---------KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEA 152 (699)
T ss_dssp TTTSCEEEEC----CCCCHHHHH---------HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTB
T ss_pred CcCceEEEEeCCcchhhHHHhhh---------cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccc
Confidence 76 88888888754322111111 45789999999998643 23444679999999999875422
Q ss_pred h---HHHHHHHh-c-------------ccCcEEEEeccCCCCC-------HHHHHHHHHhhCC
Q psy13010 185 S---MRWKLLLG-F-------------SCRNRLLLSGTPIQNS-------MAELWALLHFIMP 223 (573)
Q Consensus 185 s---~~~~~~~~-l-------------~~~~~~lLTgTP~~n~-------~~el~~ll~~L~~ 223 (573)
+ .....+.. + ....+++|||||..++ ..++..++..+++
T Consensus 153 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~ 215 (699)
T 4gl2_A 153 VYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDA 215 (699)
T ss_dssp SSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCC
Confidence 1 11111111 1 3356899999999973 3445555566655
No 14
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.86 E-value=8.4e-21 Score=207.02 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=102.8
Q ss_pred hhccHHHHHHHHHHHHHHHhCC-CCeEEeCCCCCCHHHHHHHHHHHHhhhc------CCCCCEEEEcC-cccHHHHH-HH
Q psy13010 38 RGNLKHYQLKGMNWLANLYDQG-INGILADEMGLGKTVQSIAFLCHIAETY------DVWGPFLIISP-ASTLHNWQ-QE 108 (573)
Q Consensus 38 ~~~L~~~Q~~~v~~l~~~~~~~-~~~ll~de~G~GKT~~~ia~~~~~~~~~------~~~~~~LIV~P-~~l~~qW~-~e 108 (573)
...|+|||.+++.++++.+..+ .++++++++|+|||++++.++..+...+ ...+++||||| ..|+.||. ++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3479999999999998877665 4479999999999999999888887653 13468999999 88889999 77
Q ss_pred HHHHCCCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH------hhhhccCccEEEEcccccccC
Q psy13010 109 MERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF------KYFNRIKWQYLILDEAQAIKS 182 (573)
Q Consensus 109 l~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~------~~l~~~~~~~vIiDE~h~~kn 182 (573)
+..+.+. +..+.+. ......+|+++||+.+.... ..+....|++||+||+|++.+
T Consensus 256 ~~~~~~~--~~~~~~~-----------------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~ 316 (590)
T 3h1t_A 256 FTPFGDA--RHKIEGG-----------------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSA 316 (590)
T ss_dssp CTTTCSS--EEECCC-------------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----
T ss_pred HHhcchh--hhhhhcc-----------------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccc
Confidence 7766532 2222221 11256789999999997653 234445799999999999976
Q ss_pred cc-hHHHHHHHhcccCcEEEEeccCCCCCHHHHHHH
Q psy13010 183 SS-SMRWKLLLGFSCRNRLLLSGTPIQNSMAELWAL 217 (573)
Q Consensus 183 ~~-s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~l 217 (573)
.. +.....+..+....+++|||||..+...+++.+
T Consensus 317 ~~~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~ 352 (590)
T 3h1t_A 317 RDNSNWREILEYFEPAFQIGMTATPLREDNRDTYRY 352 (590)
T ss_dssp -----CHHHHHHSTTSEEEEEESSCSCTTTHHHHHH
T ss_pred cchHHHHHHHHhCCcceEEEeccccccccchhHHHH
Confidence 53 333344555677889999999999876665443
No 15
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.84 E-value=9.3e-19 Score=180.87 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=110.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHC---CC
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFV---PD 115 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~---~~ 115 (573)
.|+|||.+++.++.. +..+++..++|+|||++++..+...........++||||| ..++.||.+++.++. ++
T Consensus 30 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 599999999976643 6788999999999999886666555443333458999999 588999999999885 46
Q ss_pred ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh--hhccCccEEEEcccccccCcch--HHHHHH
Q psy13010 116 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIKSSSS--MRWKLL 191 (573)
Q Consensus 116 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~--l~~~~~~~vIiDE~h~~kn~~s--~~~~~~ 191 (573)
.++..+.|............ ...++|+++|++.+...... +....+++||+||+|++.+... .....+
T Consensus 106 ~~~~~~~g~~~~~~~~~~~~--------~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~ 177 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDEEVLK--------KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEI 177 (391)
T ss_dssp CCEEEECTTSCHHHHHHHHH--------HSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCHHHHHHHHh--------cCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHH
Confidence 78888887654333222211 13468999999998765332 3345789999999999876321 122222
Q ss_pred H-hc-ccCcEEEEeccCCC
Q psy13010 192 L-GF-SCRNRLLLSGTPIQ 208 (573)
Q Consensus 192 ~-~l-~~~~~~lLTgTP~~ 208 (573)
. .. ....++++||||..
T Consensus 178 ~~~~~~~~~~i~~SAT~~~ 196 (391)
T 1xti_A 178 FRMTPHEKQVMMFSATLSK 196 (391)
T ss_dssp HHTSCSSSEEEEEESSCCS
T ss_pred HhhCCCCceEEEEEeeCCH
Confidence 2 22 24568999999754
No 16
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.83 E-value=1.3e-20 Score=183.56 Aligned_cols=157 Identities=19% Similarity=0.277 Sum_probs=117.5
Q ss_pred eeeccccchhccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHhhhhcCCCccccchhhHHHHHHHHHHHHHhcCCccc
Q psy13010 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPEL 345 (573)
Q Consensus 266 ~~rr~k~~~~~~LP~~~~~~v~v~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~c~hp~l 345 (573)
-+||+|+++..+|||+.+..++|+||+.|+++|+.+.+...... . ... .......++..+++||++|+||.+
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~--~--~~~----~~~~~~~~l~~l~~Lrq~~~hP~l 84 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI--D--SVT----GIKRKGMILSTLLKLKQIVDHPAL 84 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHT--T--TCC----HHHHHHHHHHHHHHHHHHTTCTHH
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHH--H--hcc----ccchHHHHHHHHHHHHHHcCCHHH
Confidence 47899999999999999999999999999999999987653221 1 111 112245788999999999999998
Q ss_pred cccccccCccccchhhhhhhhccchhhccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccCCchhhhhhhhHhhhh
Q psy13010 346 FERRDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLI 425 (573)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 425 (573)
+...
T Consensus 85 ~~~~---------------------------------------------------------------------------- 88 (271)
T 1z5z_A 85 LKGG---------------------------------------------------------------------------- 88 (271)
T ss_dssp HHCS----------------------------------------------------------------------------
T ss_pred hcCC----------------------------------------------------------------------------
Confidence 7410
Q ss_pred ccCCCCccccchhHHHHHHHHHHHHHhhcCCchhhhhhcccCcccccccccccchhhHHHHhhccccccccccccHHHHH
Q psy13010 426 HSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLD 505 (573)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~ 505 (573)
......|+|+.++.
T Consensus 89 ------------------------------------------------------------------~~~~~~s~K~~~L~ 102 (271)
T 1z5z_A 89 ------------------------------------------------------------------EQSVRRSGKMIRTM 102 (271)
T ss_dssp ------------------------------------------------------------------CCCSTTCHHHHHHH
T ss_pred ------------------------------------------------------------------ccccccCHHHHHHH
Confidence 00122588999999
Q ss_pred HHHHHHHhCCCeEEEEecchhHHHHHHHHHHhC-CCeEEEecCCCCHHHHHHHHhCcCCCCCceEEEe
Q psy13010 506 DLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYR-KYRFMRLDGSSKISERRDMFAVPGILTHQSVGLL 572 (573)
Q Consensus 506 ~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~-gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~Ll 572 (573)
+++.++...+.|+||||+|..++++|+..|... |+.+.+++|+++.++|++++++|++++.++|+|+
T Consensus 103 ~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~ 170 (271)
T 1z5z_A 103 EIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVL 170 (271)
T ss_dssp HHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEE
Confidence 999999888999999999999999999999985 9999999999999999999999999988887765
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.81 E-value=6.6e-18 Score=172.72 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=110.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC--Cc
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP--DF 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~--~~ 116 (573)
.|+|+|.+++.++++ .+..+++..++|+|||.+++..+....... ...++|||+| ..++.||.+++.++++ +.
T Consensus 28 ~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 103 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPTRELAIQVADEIESLKGNKNL 103 (367)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCc
Confidence 699999999987754 335779999999999998876666554432 2357999999 6788999999999875 35
Q ss_pred eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh--hhccCccEEEEcccccccCcc--hHHHHHHH
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIKSSS--SMRWKLLL 192 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~--l~~~~~~~vIiDE~h~~kn~~--s~~~~~~~ 192 (573)
.+..+.|........... ...+|+++|++.+...... +...++++||+||+|.+.+.. ......+.
T Consensus 104 ~v~~~~~~~~~~~~~~~~----------~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~ 173 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQIKAL----------KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILN 173 (367)
T ss_dssp CEEEECTTSCHHHHHHHH----------HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHH
T ss_pred eEEEEECCcchHHHHhhc----------CCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHH
Confidence 676677665444333322 2468999999998765432 333578999999999987654 22223333
Q ss_pred hc-ccCcEEEEeccCCC
Q psy13010 193 GF-SCRNRLLLSGTPIQ 208 (573)
Q Consensus 193 ~l-~~~~~~lLTgTP~~ 208 (573)
.+ ...+.+++||||..
T Consensus 174 ~~~~~~~~i~~SAT~~~ 190 (367)
T 1hv8_A 174 ACNKDKRILLFSATMPR 190 (367)
T ss_dssp TSCSSCEEEEECSSCCH
T ss_pred hCCCCceEEEEeeccCH
Confidence 33 35577999999843
No 18
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.80 E-value=2e-17 Score=171.41 Aligned_cols=154 Identities=16% Similarity=0.101 Sum_probs=108.5
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC--Cc
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP--DF 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~--~~ 116 (573)
.|+|||.+++.++.. +..+++..++|+|||++++..+...........++|||+| ..++.||.+++.++.+ +.
T Consensus 43 ~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 599999999987765 5678999999999999876665554443233357999999 5888899999999875 46
Q ss_pred eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh--hhccCccEEEEcccccccCcc-hHHHHHHHh
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIKSSS-SMRWKLLLG 193 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~--l~~~~~~~vIiDE~h~~kn~~-s~~~~~~~~ 193 (573)
++..+.|.......... ....++|+++|++.+...... ..-.++++||+||+|++.+.. ......+..
T Consensus 119 ~~~~~~g~~~~~~~~~~---------~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~ 189 (400)
T 1s2m_A 119 SCMVTTGGTNLRDDILR---------LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILS 189 (400)
T ss_dssp CEEEECSSSCHHHHHHH---------TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHT
T ss_pred eEEEEeCCcchHHHHHH---------hcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHH
Confidence 67777776554433322 125678999999998654322 223468999999999986643 112222222
Q ss_pred -c-ccCcEEEEeccC
Q psy13010 194 -F-SCRNRLLLSGTP 206 (573)
Q Consensus 194 -l-~~~~~~lLTgTP 206 (573)
+ .....+++|||+
T Consensus 190 ~~~~~~~~i~lSAT~ 204 (400)
T 1s2m_A 190 FLPPTHQSLLFSATF 204 (400)
T ss_dssp TSCSSCEEEEEESCC
T ss_pred hCCcCceEEEEEecC
Confidence 2 245689999996
No 19
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.78 E-value=2.1e-17 Score=171.94 Aligned_cols=155 Identities=16% Similarity=0.131 Sum_probs=108.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCC--c
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPD--F 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~--~ 116 (573)
.|+|||.+++.++.. +..+++..++|+|||++++..+...........++|||+| ..+..||.+++.++... .
T Consensus 59 ~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 134 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 134 (410)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCe
Confidence 489999999987654 6779999999999999877655554433233468999999 67889999999998643 5
Q ss_pred eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCcc--hHHHHHHH
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSSS--SMRWKLLL 192 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~~--s~~~~~~~ 192 (573)
.+..+.|............ ...+|+++|++.+..... .+....+++||+||+|++.+.. ......+.
T Consensus 135 ~~~~~~g~~~~~~~~~~~~---------~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~ 205 (410)
T 2j0s_A 135 QCHACIGGTNVGEDIRKLD---------YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 205 (410)
T ss_dssp CEEEECTTSCHHHHHHHHH---------HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHT
T ss_pred EEEEEECCCCHHHHHHHhh---------cCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHH
Confidence 6666666554433333221 234799999998865433 2334568999999999987644 22223333
Q ss_pred hc-ccCcEEEEeccCC
Q psy13010 193 GF-SCRNRLLLSGTPI 207 (573)
Q Consensus 193 ~l-~~~~~~lLTgTP~ 207 (573)
.+ .....+++||||-
T Consensus 206 ~~~~~~~~i~~SAT~~ 221 (410)
T 2j0s_A 206 YLPPATQVVLISATLP 221 (410)
T ss_dssp TSCTTCEEEEEESCCC
T ss_pred hCccCceEEEEEcCCC
Confidence 33 3457899999973
No 20
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.77 E-value=2.2e-17 Score=171.90 Aligned_cols=155 Identities=16% Similarity=0.147 Sum_probs=110.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC--Cc
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP--DF 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~--~~ 116 (573)
.|+++|.+++..+.. +..+++..++|+|||++++..+..........+++|||+| ..+..||.+++.++.. +.
T Consensus 62 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 137 (414)
T 3eiq_A 62 KPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA 137 (414)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCC
T ss_pred CCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCc
Confidence 689999999976643 6778999999999999876655555443334468999999 5788999999998863 45
Q ss_pred eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh--hhccCccEEEEcccccccCcc--hHHHHHHH
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIKSSS--SMRWKLLL 192 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~--l~~~~~~~vIiDE~h~~kn~~--s~~~~~~~ 192 (573)
.+..+.|........... .....+|+++|++.+...... +....+++||+||+|++.+.. ......+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~ 209 (414)
T 3eiq_A 138 SCHACIGGTNVRAEVQKL--------QMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 209 (414)
T ss_dssp CEEECCCCTTHHHHHHHH--------TTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHT
T ss_pred eEEEEECCcchHHHHHHH--------hcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHH
Confidence 666666655444433332 125568999999998765432 334568999999999975433 33444444
Q ss_pred hc-ccCcEEEEeccC
Q psy13010 193 GF-SCRNRLLLSGTP 206 (573)
Q Consensus 193 ~l-~~~~~~lLTgTP 206 (573)
.+ .....+++||||
T Consensus 210 ~~~~~~~~i~~SAT~ 224 (414)
T 3eiq_A 210 KLNSNTQVVLLSATM 224 (414)
T ss_dssp TSCTTCEEEEECSCC
T ss_pred hCCCCCeEEEEEEec
Confidence 44 345679999998
No 21
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.77 E-value=1.5e-18 Score=171.06 Aligned_cols=163 Identities=17% Similarity=0.189 Sum_probs=120.1
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC--C
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP--D 115 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~--~ 115 (573)
..|+|||.+++.+++. +.++++++++|+|||+++++++......+. +++|||+| ..++.||.+++.++.. .
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHCS--SEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 3799999999987765 356799999999999999888777655432 48999999 5899999999999863 3
Q ss_pred ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhc-
Q psy13010 116 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF- 194 (573)
Q Consensus 116 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l- 194 (573)
..+..+.+...... ......+|+|+||+.+.+....+ ..++++||+||+|++.+. .....+..+
T Consensus 186 ~~~~~~~~~~~~~~------------~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~~--~~~~il~~~~ 250 (282)
T 1rif_A 186 AMIKKIGGGASKDD------------KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SISSIISGLN 250 (282)
T ss_dssp GGEEECSTTCSSTT------------CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HHHHHTTTCT
T ss_pred ceEEEEeCCCcchh------------hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCcc--cHHHHHHHhh
Confidence 45555544432111 12256789999999987664432 247899999999999854 334445555
Q ss_pred ccCcEEEEeccCCCCCHHHHHHHHHhhCC
Q psy13010 195 SCRNRLLLSGTPIQNSMAELWALLHFIMP 223 (573)
Q Consensus 195 ~~~~~~lLTgTP~~n~~~el~~ll~~L~~ 223 (573)
.+.++++|||||..+ ..+++.++.+++|
T Consensus 251 ~~~~~l~lSATp~~~-~~~~~~l~~l~g~ 278 (282)
T 1rif_A 251 NCMFKFGLSGSLRDG-KANIMQYVGMFGE 278 (282)
T ss_dssp TCCEEEEECSSCCTT-STTHHHHHHHHCE
T ss_pred cCCeEEEEeCCCCCc-chHHHHHHHhcCC
Confidence 578899999999654 4677777777654
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.76 E-value=8.2e-18 Score=173.87 Aligned_cols=166 Identities=17% Similarity=0.116 Sum_probs=115.3
Q ss_pred CccCCCCchhhh--------ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-
Q psy13010 28 EVERPQPGLFRG--------NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP- 98 (573)
Q Consensus 28 ~~~~~~p~~l~~--------~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P- 98 (573)
...+..|+.+.. .|+|||.+++.++.. +..+++..++|+|||++++..+..........+++|||||
T Consensus 23 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 98 (394)
T 1fuu_A 23 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 98 (394)
T ss_dssp SGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred hhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCC
Confidence 444566666632 799999999987765 6778999999999999865444443333233458999999
Q ss_pred cccHHHHHHHHHHHCC--CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEE
Q psy13010 99 ASTLHNWQQEMERFVP--DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLIL 174 (573)
Q Consensus 99 ~~l~~qW~~el~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIi 174 (573)
..++.||.+++.++.+ +.++..+.|........... ...+|+++|++.+..... .+...++++||+
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 99 RELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL----------RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHH----------HHCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhc----------CCCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 5888999999999875 46777777765443332221 245799999999866543 233457899999
Q ss_pred cccccccCc--chHHHHHHHhc-ccCcEEEEeccCC
Q psy13010 175 DEAQAIKSS--SSMRWKLLLGF-SCRNRLLLSGTPI 207 (573)
Q Consensus 175 DE~h~~kn~--~s~~~~~~~~l-~~~~~~lLTgTP~ 207 (573)
||+|.+... .......+..+ .....+++||||-
T Consensus 169 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 204 (394)
T 1fuu_A 169 DEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 204 (394)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred EChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecC
Confidence 999997432 23333334444 3456899999984
No 23
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.75 E-value=1.4e-16 Score=164.59 Aligned_cols=153 Identities=15% Similarity=0.112 Sum_probs=104.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC--Cc
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP--DF 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~--~~ 116 (573)
.|+|+|.+++..++.. .+..+++..++|+|||++++..+.......+..+++|||+| ..++.||.+++.++.. +.
T Consensus 27 ~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 104 (395)
T 3pey_A 27 KPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKI 104 (395)
T ss_dssp SCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCe
Confidence 6899999999866431 23778999999999999887666555443334468999999 6688999999998763 34
Q ss_pred eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCcc--hHHHHHHH
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSSS--SMRWKLLL 192 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~~--s~~~~~~~ 192 (573)
.+....+..... ......+|+++|++.+..... .+...++++||+||+|++.+.. ......+.
T Consensus 105 ~~~~~~~~~~~~-------------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~ 171 (395)
T 3pey_A 105 TSQLIVPDSFEK-------------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVK 171 (395)
T ss_dssp CEEEESTTSSCT-------------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHH
T ss_pred eEEEEecCchhh-------------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHH
Confidence 455554432211 122467899999999876532 2233478999999999986522 12222233
Q ss_pred hc--ccCcEEEEeccCC
Q psy13010 193 GF--SCRNRLLLSGTPI 207 (573)
Q Consensus 193 ~l--~~~~~~lLTgTP~ 207 (573)
.. .....+++||||.
T Consensus 172 ~~~~~~~~~i~~SAT~~ 188 (395)
T 3pey_A 172 RFLPKDTQLVLFSATFA 188 (395)
T ss_dssp HTSCTTCEEEEEESCCC
T ss_pred HhCCCCcEEEEEEecCC
Confidence 22 2456899999974
No 24
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.74 E-value=9.1e-16 Score=159.48 Aligned_cols=169 Identities=17% Similarity=0.129 Sum_probs=111.2
Q ss_pred CCCCccCCCCchhh--------hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEE
Q psy13010 25 FSTEVERPQPGLFR--------GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96 (573)
Q Consensus 25 ~~~~~~~~~p~~l~--------~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV 96 (573)
......+.+++.+. ..|+|+|.+++..+.. ..+...++..++|+|||++++..+............+|||
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~--~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil 101 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 101 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHS--SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc--CCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEE
Confidence 33444555666542 2689999999976543 1247789999999999998755544444433444579999
Q ss_pred cC-cccHHHHHHHHHHHC---CCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh---hhhccCc
Q psy13010 97 SP-ASTLHNWQQEMERFV---PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK---YFNRIKW 169 (573)
Q Consensus 97 ~P-~~l~~qW~~el~~~~---~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~---~l~~~~~ 169 (573)
+| ..++.||.+.+.++. ++..+....+...... ......+|+++|++.+..... .+.-..+
T Consensus 102 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~ 169 (412)
T 3fht_A 102 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER------------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKI 169 (412)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT------------TCCCCCSEEEECHHHHHHHHTTSCSSCGGGC
T ss_pred CCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh------------hhcCCCCEEEECchHHHHHHHhcCCcChhhC
Confidence 99 668889988887765 4566666665432211 112456899999999976542 2333478
Q ss_pred cEEEEcccccccC--cchHHHHHHHh-cc-cCcEEEEeccCC
Q psy13010 170 QYLILDEAQAIKS--SSSMRWKLLLG-FS-CRNRLLLSGTPI 207 (573)
Q Consensus 170 ~~vIiDE~h~~kn--~~s~~~~~~~~-l~-~~~~~lLTgTP~ 207 (573)
++||+||+|++.. ........+.. +. ....+++||||-
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 211 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE 211 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecC
Confidence 9999999998743 22222333333 32 446899999984
No 25
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.74 E-value=5.4e-16 Score=161.55 Aligned_cols=168 Identities=14% Similarity=0.190 Sum_probs=111.6
Q ss_pred CCccCCCCchhh--------hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHH-HHHHHHhhhcC---------
Q psy13010 27 TEVERPQPGLFR--------GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSI-AFLCHIAETYD--------- 88 (573)
Q Consensus 27 ~~~~~~~p~~l~--------~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~i-a~~~~~~~~~~--------- 88 (573)
....+..++.+. ..|+|+|.+++..+. .+..+++..++|+|||+.++ .++..+.....
T Consensus 16 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 16 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIK----EKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp SGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHc----cCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 344455565553 278999999987553 47788999999999998764 34444443221
Q ss_pred --------CCCCEEEEcC-cccHHHHHHHHHHHCC--CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhH
Q psy13010 89 --------VWGPFLIISP-ASTLHNWQQEMERFVP--DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLV 157 (573)
Q Consensus 89 --------~~~~~LIV~P-~~l~~qW~~el~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~ 157 (573)
....+|||+| ..++.||.+++.++.. +.++..+.|........... ....+|+++|++.+
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---------~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL---------ERGCHLLVATPGRL 162 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH---------TTCCSEEEECHHHH
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh---------hCCCCEEEEChHHH
Confidence 1135899999 6889999999998763 46777777765444433332 13568999999999
Q ss_pred HhhHhh--hhccCccEEEEcccccccCcc-hHHHHHHHhc---c---cCcEEEEeccCC
Q psy13010 158 VSDFKY--FNRIKWQYLILDEAQAIKSSS-SMRWKLLLGF---S---CRNRLLLSGTPI 207 (573)
Q Consensus 158 ~~~~~~--l~~~~~~~vIiDE~h~~kn~~-s~~~~~~~~l---~---~~~~~lLTgTP~ 207 (573)
...... +....+++||+||+|++.... ......+... . ....+++|||+-
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~ 221 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFP 221 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCC
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCC
Confidence 765432 333467899999999975432 2223333321 1 345799999973
No 26
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.74 E-value=6.6e-16 Score=161.63 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=105.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHH-HHHHHhhhcC----CCCCEEEEcC-cccHHHHHHHHHHHC
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIA-FLCHIAETYD----VWGPFLIISP-ASTLHNWQQEMERFV 113 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia-~~~~~~~~~~----~~~~~LIV~P-~~l~~qW~~el~~~~ 113 (573)
.++|+|..++..+. .+...++..++|+|||+..+. ++..+..... ....+|||+| ..|..||.+++.++.
T Consensus 78 ~pt~iQ~~ai~~i~----~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 78 IPTPIQKCSIPVIS----SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh----cCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 58999999997664 477889999999999997654 4444443221 1347999999 678899999999987
Q ss_pred CC--ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCcc--hHH
Q psy13010 114 PD--FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSSS--SMR 187 (573)
Q Consensus 114 ~~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~~--s~~ 187 (573)
.. .++.++.|........... ....+|+++|++.+..... .+.-.++++||+||+|++.+.+ ...
T Consensus 154 ~~~~~~~~~~~gg~~~~~~~~~l---------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~ 224 (434)
T 2db3_A 154 FESYLKIGIVYGGTSFRHQNECI---------TRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDM 224 (434)
T ss_dssp TTSSCCCCEECTTSCHHHHHHHH---------TTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHH
T ss_pred ccCCcEEEEEECCCCHHHHHHHh---------hcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHH
Confidence 43 5565555554333222221 1457899999999866543 2233468899999999986643 223
Q ss_pred HHHHHhc---ccCcEEEEeccC
Q psy13010 188 WKLLLGF---SCRNRLLLSGTP 206 (573)
Q Consensus 188 ~~~~~~l---~~~~~~lLTgTP 206 (573)
.+.+..+ .....+++|||+
T Consensus 225 ~~i~~~~~~~~~~q~l~~SAT~ 246 (434)
T 2db3_A 225 RRIMTHVTMRPEHQTLMFSATF 246 (434)
T ss_dssp HHHHHCTTSCSSCEEEEEESCC
T ss_pred HHHHHhcCCCCCceEEEEeccC
Confidence 3333332 245689999997
No 27
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.72 E-value=1.8e-16 Score=169.32 Aligned_cols=158 Identities=13% Similarity=0.138 Sum_probs=105.3
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKV 118 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v 118 (573)
.|+|+|.+++..+.+ +..+++..++|+|||+..+..+ +.. .+.+|||+| ..|+.||.+++..+ +..+
T Consensus 25 ~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~--l~~----~g~~lvi~P~~aL~~q~~~~l~~~--gi~~ 92 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPA--LLL----NGLTVVVSPLISLMKDQVDQLQAN--GVAA 92 (523)
T ss_dssp SCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHH--HHS----SSEEEEECSCHHHHHHHHHHHHHT--TCCE
T ss_pred CCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHH--HHh----CCCEEEECChHHHHHHHHHHHHHc--CCcE
Confidence 689999999986653 6788999999999998653222 222 257899999 78888999999886 4556
Q ss_pred EeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhh--HhhhhccCccEEEEcccccccCcc---hHHHHHH--
Q psy13010 119 VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD--FKYFNRIKWQYLILDEAQAIKSSS---SMRWKLL-- 191 (573)
Q Consensus 119 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~--~~~l~~~~~~~vIiDE~h~~kn~~---s~~~~~~-- 191 (573)
..+.+............... .+..+|+++|++.+... .+.+...++.+||+||+|.+...+ ...+..+
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~-----~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~ 167 (523)
T 1oyw_A 93 ACLNSTQTREQQLEVMTGCR-----TGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQ 167 (523)
T ss_dssp EEECTTSCHHHHHHHHHHHH-----HTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGG
T ss_pred EEEeCCCCHHHHHHHHHHHh-----cCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHH
Confidence 66666533222111111111 15678999999998543 234555788999999999986432 1222222
Q ss_pred --HhcccCcEEEEeccCCCCCHHHH
Q psy13010 192 --LGFSCRNRLLLSGTPIQNSMAEL 214 (573)
Q Consensus 192 --~~l~~~~~~lLTgTP~~n~~~el 214 (573)
..+....+++|||||......++
T Consensus 168 l~~~~~~~~~i~lSAT~~~~~~~~i 192 (523)
T 1oyw_A 168 LRQRFPTLPFMALTATADDTTRQDI 192 (523)
T ss_dssp HHHHCTTSCEEEEESCCCHHHHHHH
T ss_pred HHHhCCCCCEEEEeCCCCHHHHHHH
Confidence 23345678999999976444443
No 28
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.72 E-value=4.3e-17 Score=155.84 Aligned_cols=141 Identities=20% Similarity=0.260 Sum_probs=108.0
Q ss_pred hhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc-ccHHHHHHHHHHHCCCc
Q psy13010 38 RGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA-STLHNWQQEMERFVPDF 116 (573)
Q Consensus 38 ~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~-~l~~qW~~el~~~~~~~ 116 (573)
...|++||.+++..+.+ +..++++.++|+|||.++++++... .+++|||+|. .++.||.+++.++ +.
T Consensus 91 ~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~--~~ 158 (237)
T 2fz4_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (237)
T ss_dssp CCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG--CG
T ss_pred CCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC--CC
Confidence 34899999999975433 4558999999999999998877654 2589999995 8889999999884 45
Q ss_pred e-EEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcc
Q psy13010 117 K-VVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFS 195 (573)
Q Consensus 117 ~-v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~ 195 (573)
+ +..+.|... ...+|+++||+.+......+. ..|++||+||+|++.+.. ..+.+..+.
T Consensus 159 ~~v~~~~g~~~------------------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~--~~~i~~~~~ 217 (237)
T 2fz4_A 159 EYVGEFSGRIK------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES--YVQIAQMSI 217 (237)
T ss_dssp GGEEEESSSCB------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTT--HHHHHHTCC
T ss_pred CeEEEEeCCCC------------------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChH--HHHHHHhcc
Confidence 5 777777542 245799999999987766543 469999999999998754 233445567
Q ss_pred cCcEEEEeccCCCCCH
Q psy13010 196 CRNRLLLSGTPIQNSM 211 (573)
Q Consensus 196 ~~~~~lLTgTP~~n~~ 211 (573)
+.++++|||||.+++-
T Consensus 218 ~~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 218 APFRLGLTATFEREDG 233 (237)
T ss_dssp CSEEEEEEESCC----
T ss_pred CCEEEEEecCCCCCCC
Confidence 8899999999998764
No 29
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.70 E-value=2.1e-15 Score=174.24 Aligned_cols=155 Identities=14% Similarity=0.163 Sum_probs=110.6
Q ss_pred hccHHHHHHHHHHHHHHHhCCC--CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCC
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGI--NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPD 115 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~--~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~ 115 (573)
-.++|+|.+++..+...+..+. .++++.++|+|||.+++..+......+ +.+||+|| ..+..||.+++.+++++
T Consensus 602 ~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g---~~vlvlvPt~~La~Q~~~~~~~~~~~ 678 (1151)
T 2eyq_A 602 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH---KQVAVLVPTTLLAQQHYDNFRDRFAN 678 (1151)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT---CEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC---CeEEEEechHHHHHHHHHHHHHHhhc
Confidence 3679999999998887666554 689999999999998875544443332 48999999 55788999999988864
Q ss_pred --ceEEeecCChh--HHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHH
Q psy13010 116 --FKVVPYWGSPQ--ERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLL 191 (573)
Q Consensus 116 --~~v~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~ 191 (573)
.++..+.+... ........ . ..+..+|+|+|++.+... +.-.++++||+||+|++.. .....+
T Consensus 679 ~~i~v~~l~~~~~~~~~~~~~~~--l-----~~g~~dIvV~T~~ll~~~---~~~~~l~lvIiDEaH~~g~---~~~~~l 745 (1151)
T 2eyq_A 679 WPVRIEMISRFRSAKEQTQILAE--V-----AEGKIDILIGTHKLLQSD---VKFKDLGLLIVDEEHRFGV---RHKERI 745 (1151)
T ss_dssp TTCCEEEESTTSCHHHHHHHHHH--H-----HTTCCSEEEECTHHHHSC---CCCSSEEEEEEESGGGSCH---HHHHHH
T ss_pred CCCeEEEEeCCCCHHHHHHHHHH--H-----hcCCCCEEEECHHHHhCC---ccccccceEEEechHhcCh---HHHHHH
Confidence 56666665432 22222111 1 125678999999887543 2334789999999999743 345556
Q ss_pred Hhcc-cCcEEEEeccCCCC
Q psy13010 192 LGFS-CRNRLLLSGTPIQN 209 (573)
Q Consensus 192 ~~l~-~~~~~lLTgTP~~n 209 (573)
+.+. ...+++|||||.++
T Consensus 746 ~~l~~~~~vl~lSATp~p~ 764 (1151)
T 2eyq_A 746 KAMRANVDILTLTATPIPR 764 (1151)
T ss_dssp HHHHTTSEEEEEESSCCCH
T ss_pred HHhcCCCCEEEEcCCCChh
Confidence 6654 45789999999864
No 30
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.70 E-value=8.4e-16 Score=155.10 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=104.9
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC--Cc
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP--DF 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~--~~ 116 (573)
.|+|||.+++.++.+ +..+++..++|+|||++++..+... .+++|||+| ..++.||.+++.++.+ +.
T Consensus 16 ~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 85 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYMDT 85 (337)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhcCC
Confidence 589999999987653 6789999999999999876555432 247899999 5888999999998864 46
Q ss_pred eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCcc--hHHHHHHH
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSSS--SMRWKLLL 192 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~~--s~~~~~~~ 192 (573)
++..+.|........... ...+|+++|++.+..... .+....|++||+||+|.+.+.. ......+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~----------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~ 155 (337)
T 2z0m_A 86 KVAEVYGGMPYKAQINRV----------RNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILA 155 (337)
T ss_dssp CEEEECTTSCHHHHHHHH----------TTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHH
T ss_pred cEEEEECCcchHHHHhhc----------CCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHh
Confidence 677777765443333322 347899999999876533 2334578999999999986433 22223333
Q ss_pred hcccC-cEEEEeccCC
Q psy13010 193 GFSCR-NRLLLSGTPI 207 (573)
Q Consensus 193 ~l~~~-~~~lLTgTP~ 207 (573)
.+... ..+++||||-
T Consensus 156 ~~~~~~~~~~~SAT~~ 171 (337)
T 2z0m_A 156 QTSNRKITGLFSATIP 171 (337)
T ss_dssp HCTTCSEEEEEESCCC
T ss_pred hCCcccEEEEEeCcCC
Confidence 34333 4567899983
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.69 E-value=3e-15 Score=155.89 Aligned_cols=159 Identities=14% Similarity=0.208 Sum_probs=110.9
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC-Cce
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP-DFK 117 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~-~~~ 117 (573)
+|+|+|.+++..+. .+...++..++|+|||+.++..+...... .+.+|||+| ..++.||.+++.++.+ +.+
T Consensus 21 ~~~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~l~~~~~~~~~---~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 93 (414)
T 3oiy_A 21 DLTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLARK---GKKSALVFPTVTLVKQTLERLQKLADEKVK 93 (414)
T ss_dssp CCCHHHHHHHHHHT----TTCCEECCSCSSSSHHHHHHHHHHHHHTT---TCCEEEEESSHHHHHHHHHHHHHHCCSSCC
T ss_pred CCCHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHhcC---CCEEEEEECCHHHHHHHHHHHHHHccCCce
Confidence 58899999987554 36788999999999999655444443322 258999999 6888999999999875 678
Q ss_pred EEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccC-------------cc
Q psy13010 118 VVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKS-------------SS 184 (573)
Q Consensus 118 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn-------------~~ 184 (573)
+..+.|................ +.++|+++|++.+......+....+++||+||+|.+.. ..
T Consensus 94 v~~~~g~~~~~~~~~~~~~l~~-----~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~ 168 (414)
T 3oiy_A 94 IFGFYSSMKKEEKEKFEKSFEE-----DDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIP 168 (414)
T ss_dssp EEECCTTSCHHHHHHHHHHHHH-----TCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCC
T ss_pred EEEEECCCChhhHHHHHHHhhc-----CCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCc
Confidence 8888887544211111111111 44789999999998777666667899999999998632 22
Q ss_pred hH-HHHHHHhc------------ccCcEEEEeccCCCCC
Q psy13010 185 SM-RWKLLLGF------------SCRNRLLLSGTPIQNS 210 (573)
Q Consensus 185 s~-~~~~~~~l------------~~~~~~lLTgTP~~n~ 210 (573)
.. ....+..+ .....+++||||.+..
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~ 207 (414)
T 3oiy_A 169 EEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRG 207 (414)
T ss_dssp HHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCS
T ss_pred HHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcch
Confidence 22 22223322 3456799999977655
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.65 E-value=5.7e-15 Score=159.48 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=101.9
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKV 118 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v 118 (573)
.|+|+|.+++..++. +..+++..++|+|||+..+..+ +.. .+.+|||+| ..|+.||.+.+..+ +..+
T Consensus 44 ~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpa--l~~----~g~~lVisP~~~L~~q~~~~l~~~--gi~~ 111 (591)
T 2v1x_A 44 KFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPA--LCS----DGFTLVICPLISLMEDQLMVLKQL--GISA 111 (591)
T ss_dssp SCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHH--HTS----SSEEEEECSCHHHHHHHHHHHHHH--TCCE
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHH--HHc----CCcEEEEeCHHHHHHHHHHHHHhc--CCcE
Confidence 689999999986654 6778999999999998643322 222 258999999 78899999999987 5666
Q ss_pred EeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhh---Hhhh----hccCccEEEEcccccccCcc-------
Q psy13010 119 VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD---FKYF----NRIKWQYLILDEAQAIKSSS------- 184 (573)
Q Consensus 119 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~---~~~l----~~~~~~~vIiDE~h~~kn~~------- 184 (573)
..+.|.............. ....+.++|+++|++.+... .+.+ ....+.+||+||+|.+...+
T Consensus 112 ~~l~~~~~~~~~~~~~~~l---~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~ 188 (591)
T 2v1x_A 112 TMLNASSSKEHVKWVHAEM---VNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDY 188 (591)
T ss_dssp EECCSSCCHHHHHHHHHHH---HCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGG
T ss_pred EEEeCCCCHHHHHHHHHHh---hcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHH
Confidence 6666653322211111000 01236789999999987531 2222 23478999999999975421
Q ss_pred hHHHHHHHhcccCcEEEEeccCCC
Q psy13010 185 SMRWKLLLGFSCRNRLLLSGTPIQ 208 (573)
Q Consensus 185 s~~~~~~~~l~~~~~~lLTgTP~~ 208 (573)
.........+....+++|||||..
T Consensus 189 ~~l~~l~~~~~~~~ii~lSAT~~~ 212 (591)
T 2v1x_A 189 KALGILKRQFPNASLIGLTATATN 212 (591)
T ss_dssp GGGGHHHHHCTTSEEEEEESSCCH
T ss_pred HHHHHHHHhCCCCcEEEEecCCCH
Confidence 111122233345678999999954
No 33
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.65 E-value=2.3e-15 Score=146.40 Aligned_cols=57 Identities=28% Similarity=0.419 Sum_probs=53.2
Q ss_pred ccccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCH
Q psy13010 495 VYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKI 551 (573)
Q Consensus 495 ~~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~ 551 (573)
+..|+|+..|..++..+.+.|.|||||||++.++|+||.+|..+|+.|.|+||++..
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~ 161 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK 161 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-
T ss_pred HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh
Confidence 457999999999999999899999999999999999999999999999999999654
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.64 E-value=4.6e-16 Score=166.03 Aligned_cols=155 Identities=15% Similarity=0.062 Sum_probs=101.5
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKV 118 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v 118 (573)
.|+++|.+++..+... .+..+++..++|+|||.+++..+..........+.+|||+| ..++.||.+++.+++....+
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 5889999999755431 24778999999999999876655555444344458999999 66889999999998765443
Q ss_pred EeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCc--chHHHHHHH-h
Q psy13010 119 VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSS--SSMRWKLLL-G 193 (573)
Q Consensus 119 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~--~s~~~~~~~-~ 193 (573)
.+..+....... .....++|+++|++.+..... .+....+++||+||+|++... .......+. .
T Consensus 219 ~~~~~~~~~~~~-----------~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~ 287 (508)
T 3fho_A 219 KTAFGIKDSVPK-----------GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHL 287 (508)
T ss_dssp CEEC---------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHH
T ss_pred eEEEEeCCcccc-----------cccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHh
Confidence 333222111110 112467899999999866432 223346899999999998542 122333333 3
Q ss_pred cc-cCcEEEEeccCC
Q psy13010 194 FS-CRNRLLLSGTPI 207 (573)
Q Consensus 194 l~-~~~~~lLTgTP~ 207 (573)
+. ....+++||||-
T Consensus 288 ~~~~~~~i~lSAT~~ 302 (508)
T 3fho_A 288 LPRNTQIVLFSATFS 302 (508)
T ss_dssp SCTTCEEEEEESCCS
T ss_pred CCcCCeEEEEeCCCC
Confidence 33 445799999984
No 35
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=2.1e-14 Score=155.94 Aligned_cols=159 Identities=17% Similarity=0.143 Sum_probs=102.9
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHH-HHhhhc---CCCCCEEEEcC-cccHHHHHHHHHHHC-
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLC-HIAETY---DVWGPFLIISP-ASTLHNWQQEMERFV- 113 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~-~~~~~~---~~~~~~LIV~P-~~l~~qW~~el~~~~- 113 (573)
.|+|+|.+++..++. ..+...++..++|+|||+.++..+. .+.... .....+|||+| ..|+.||.+++.++.
T Consensus 43 ~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp SCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 599999999976541 1355678999999999998654444 333321 11237899999 688899999998864
Q ss_pred -----CCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh---hhccCccEEEEcccccccCcc-
Q psy13010 114 -----PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY---FNRIKWQYLILDEAQAIKSSS- 184 (573)
Q Consensus 114 -----~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~---l~~~~~~~vIiDE~h~~kn~~- 184 (573)
+...+....|.......+..... ...+|+|+|++.+...... ..-..+++||+||+|++....
T Consensus 121 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~--------~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf 192 (579)
T 3sqw_A 121 MNYGLKKYACVSLVGGTDFRAAMNKMNK--------LRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGF 192 (579)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHHHHHH--------HCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTT
T ss_pred hcccccceEEEEEECCccHHHHHHHHhc--------CCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCC
Confidence 34556655555443333332211 3468999999998764432 223468899999999986543
Q ss_pred -hHHHHHHHhc---c-----cCcEEEEeccCCC
Q psy13010 185 -SMRWKLLLGF---S-----CRNRLLLSGTPIQ 208 (573)
Q Consensus 185 -s~~~~~~~~l---~-----~~~~~lLTgTP~~ 208 (573)
......+..+ . ....+++|||+-.
T Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~ 225 (579)
T 3sqw_A 193 RDDLETISGILNEKNSKSADNIKTLLFSATLDD 225 (579)
T ss_dssp HHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred HHHHHHHHHHhhhhhcccccCceEEEEeccCCh
Confidence 1111222222 1 3468999999753
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.62 E-value=1.9e-15 Score=166.83 Aligned_cols=156 Identities=19% Similarity=0.203 Sum_probs=109.1
Q ss_pred ccHHHHHHHHHHHHHHHhCC--CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC--
Q psy13010 40 NLKHYQLKGMNWLANLYDQG--INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP-- 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~--~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~-- 114 (573)
.|+++|.+++..+...+..+ ...++..++|+|||++++..+......+ ..+||++| ..+..||.+++.++++
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g---~qvlvlaPtr~La~Q~~~~l~~~~~~~ 444 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAIQHYRRTVESFSKF 444 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHhhhc
Confidence 79999999999887766544 4779999999999999876666554442 47899999 5788899999999876
Q ss_pred CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhc
Q psy13010 115 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF 194 (573)
Q Consensus 115 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l 194 (573)
+.++..+.|.............. ..+..+|+|+|++.+... +.-.++++||+||+|++.... + ..+...
T Consensus 445 gi~v~~l~G~~~~~~r~~~~~~l-----~~g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaHr~g~~q--r-~~l~~~ 513 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIKSGL-----RNGQIDVVIGTHALIQED---VHFKNLGLVIIDEQHRFGVKQ--R-EALMNK 513 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHHHHH-----HSSCCCEEEECTTHHHHC---CCCSCCCEEEEESCCCC--------CCCCSS
T ss_pred CceEEEEeCCCCHHHHHHHHHHH-----hcCCCCEEEECHHHHhhh---hhccCCceEEecccchhhHHH--H-HHHHHh
Confidence 47888888865433322111111 125678999999887542 333477999999999984321 1 111111
Q ss_pred -ccCcEEEEeccCCCC
Q psy13010 195 -SCRNRLLLSGTPIQN 209 (573)
Q Consensus 195 -~~~~~~lLTgTP~~n 209 (573)
.....+++||||.+.
T Consensus 514 ~~~~~vL~mSATp~p~ 529 (780)
T 1gm5_A 514 GKMVDTLVMSATPIPR 529 (780)
T ss_dssp SSCCCEEEEESSCCCH
T ss_pred CCCCCEEEEeCCCCHH
Confidence 346789999999763
No 37
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.61 E-value=8.2e-15 Score=137.09 Aligned_cols=156 Identities=19% Similarity=0.169 Sum_probs=108.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhh---cCCCCCEEEEcCc-ccHHHHHHHHHHHCCC
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAET---YDVWGPFLIISPA-STLHNWQQEMERFVPD 115 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~---~~~~~~~LIV~P~-~l~~qW~~el~~~~~~ 115 (573)
.|+|||.+++..+.+ +..+++..++|+|||++++..+...... ......+|||+|. .++.||.+++.++.+.
T Consensus 23 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 23 TPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 689999999986643 6788999999999999865544443321 1223579999995 8889999999999988
Q ss_pred ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh--hhccCccEEEEcccccccCc--chHHHHHH
Q psy13010 116 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIKSS--SSMRWKLL 191 (573)
Q Consensus 116 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~--l~~~~~~~vIiDE~h~~kn~--~s~~~~~~ 191 (573)
.++..+.|............ ..++|+++|++.+...... +.-..+++||+||+|++.+. .......+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~---------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~ 169 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQKEALL---------RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALL 169 (207)
T ss_dssp SCEEEECSSSCSHHHHHHHH---------HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHH
T ss_pred ceEEEEECCCChHHHHHHhh---------CCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHH
Confidence 88877777644322222211 3468999999988664432 33346899999999997533 23333334
Q ss_pred Hhcc-cCcEEEEeccCCC
Q psy13010 192 LGFS-CRNRLLLSGTPIQ 208 (573)
Q Consensus 192 ~~l~-~~~~~lLTgTP~~ 208 (573)
..+. ....+++|||+-.
T Consensus 170 ~~~~~~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 170 SATPPSRQTLLFSATLPS 187 (207)
T ss_dssp HTSCTTSEEEEECSSCCH
T ss_pred HhCCccCeEEEEEEecCH
Confidence 4443 4568999999843
No 38
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.61 E-value=1e-14 Score=137.94 Aligned_cols=158 Identities=16% Similarity=0.171 Sum_probs=110.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHC---CC
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFV---PD 115 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~---~~ 115 (573)
.|+|||.+++..+.+ +..+++..++|+|||+.++..+...........++|||+| ..++.||.+++.++. ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 489999999976654 6778999999999999887666655443333348999999 688899999999886 46
Q ss_pred ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCc-c--hHHHHH
Q psy13010 116 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSS-S--SMRWKL 190 (573)
Q Consensus 116 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~-~--s~~~~~ 190 (573)
.++.++.|............ ....+|+++|++.+..... .+.-..++++|+||+|++... . ......
T Consensus 112 ~~v~~~~g~~~~~~~~~~~~--------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i 183 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDEEVLK--------KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEI 183 (220)
T ss_dssp CCEEEESCCSCHHHHHHHHH--------HSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHH
T ss_pred ceEEEEeCCCChHHHHHHHh--------cCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHH
Confidence 78888887654333222211 0346899999999876433 233346899999999998542 1 122222
Q ss_pred HHhcc-cCcEEEEeccCCCC
Q psy13010 191 LLGFS-CRNRLLLSGTPIQN 209 (573)
Q Consensus 191 ~~~l~-~~~~~lLTgTP~~n 209 (573)
+..+. ...++++||||-.+
T Consensus 184 ~~~~~~~~~~i~~SAT~~~~ 203 (220)
T 1t6n_A 184 FRMTPHEKQVMMFSATLSKE 203 (220)
T ss_dssp HHTSCSSSEEEEEESCCCTT
T ss_pred HHhCCCcCeEEEEEeecCHH
Confidence 33333 45789999999654
No 39
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.61 E-value=6e-14 Score=151.99 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=101.9
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCC----CCCEEEEcC-cccHHHHHHHHHHHC-
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDV----WGPFLIISP-ASTLHNWQQEMERFV- 113 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~----~~~~LIV~P-~~l~~qW~~el~~~~- 113 (573)
.|+|+|.+++..++. ..+...++..++|+|||+.++..+......... ...+|||+| ..|+.||.+++.++.
T Consensus 94 ~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~ 171 (563)
T 3i5x_A 94 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 171 (563)
T ss_dssp SCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 599999999976541 135567999999999999865444433322221 236899999 788899999998853
Q ss_pred -----CCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhh---hccCccEEEEcccccccCcc-
Q psy13010 114 -----PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYF---NRIKWQYLILDEAQAIKSSS- 184 (573)
Q Consensus 114 -----~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l---~~~~~~~vIiDE~h~~kn~~- 184 (573)
+...+....|............ ....+|+|+|++.+....... .-..+++||+||+|++....
T Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f 243 (563)
T 3i5x_A 172 MNYGLKKYACVSLVGGTDFRAAMNKMN--------KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGF 243 (563)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHHHHH--------HHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTT
T ss_pred hccccCceeEEEEECCcCHHHHHHHHh--------cCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccch
Confidence 2345655555544333332211 035689999999987644322 22358899999999986543
Q ss_pred -hHHHHHHHhc---c-----cCcEEEEeccCCC
Q psy13010 185 -SMRWKLLLGF---S-----CRNRLLLSGTPIQ 208 (573)
Q Consensus 185 -s~~~~~~~~l---~-----~~~~~lLTgTP~~ 208 (573)
......+..+ . ....+++|||+-.
T Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~ 276 (563)
T 3i5x_A 244 RDDLETISGILNEKNSKSADNIKTLLFSATLDD 276 (563)
T ss_dssp HHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred HHHHHHHHHhhhhccccCccCceEEEEEccCCH
Confidence 1111122222 1 3358999999743
No 40
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.60 E-value=3.5e-15 Score=158.40 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=100.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHH---CCC
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERF---VPD 115 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~---~~~ 115 (573)
.|+|+|..++..++. ..+...++..++|+|||.+.+..+............+|||+| ..|..||.+.+.++ +++
T Consensus 114 ~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 191 (479)
T 3fmp_B 114 RPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 (479)
T ss_dssp SCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTT
T ss_pred CCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCC
Confidence 578899999976643 123667999999999999865444433333233347999999 67788887776654 456
Q ss_pred ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh---hhhccCccEEEEcccccccCcc--hHHHHH
Q psy13010 116 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK---YFNRIKWQYLILDEAQAIKSSS--SMRWKL 190 (573)
Q Consensus 116 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~---~l~~~~~~~vIiDE~h~~kn~~--s~~~~~ 190 (573)
..+.+..+...... ......+|+|+|++.+..... .+.-..+++||+||+|++.... ......
T Consensus 192 ~~~~~~~~~~~~~~------------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 259 (479)
T 3fmp_B 192 LKLAYAVRGNKLER------------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 259 (479)
T ss_dssp CCEEEESTTCCCCT------------TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHH
T ss_pred ceEEEEeCCccccc------------cccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHH
Confidence 67766665432111 112456899999999966542 2333478999999999875421 222223
Q ss_pred HHhc--ccCcEEEEeccCCC
Q psy13010 191 LLGF--SCRNRLLLSGTPIQ 208 (573)
Q Consensus 191 ~~~l--~~~~~~lLTgTP~~ 208 (573)
+... .....+++||||-.
T Consensus 260 i~~~~~~~~~~i~~SAT~~~ 279 (479)
T 3fmp_B 260 IQRMLPRNCQMLLFSATFED 279 (479)
T ss_dssp HHTTSCTTSEEEEEESCCCH
T ss_pred HHhhCCccceEEEEeCCCCH
Confidence 3332 24568999999843
No 41
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.59 E-value=2.4e-14 Score=136.36 Aligned_cols=167 Identities=16% Similarity=0.123 Sum_probs=114.2
Q ss_pred CCCccCCCCchhhh--------ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHH-HHHHHhhhcCCCCCEEEE
Q psy13010 26 STEVERPQPGLFRG--------NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIA-FLCHIAETYDVWGPFLII 96 (573)
Q Consensus 26 ~~~~~~~~p~~l~~--------~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia-~~~~~~~~~~~~~~~LIV 96 (573)
.....+.+++.+.. .|+|||.+++..+.+ +..+++..++|+|||+..+. ++..+... ....++|||
T Consensus 24 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~lil 98 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLE-NLSTQILIL 98 (230)
T ss_dssp CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTT-SCSCCEEEE
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhc-CCCceEEEE
Confidence 33444555654421 589999999976543 67889999999999998543 34443332 333589999
Q ss_pred cC-cccHHHHHHHHHHHC---CCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCcc
Q psy13010 97 SP-ASTLHNWQQEMERFV---PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQ 170 (573)
Q Consensus 97 ~P-~~l~~qW~~el~~~~---~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~ 170 (573)
+| ..+..||.+++.++. ++.++.++.|........... ...+|+++|++.+..... .+...+++
T Consensus 99 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~ 168 (230)
T 2oxc_A 99 APTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL----------KKCHIAVGSPGRIKQLIELDYLNPGSIR 168 (230)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT----------TSCSEEEECHHHHHHHHHTTSSCGGGCC
T ss_pred eCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc----------cCCCEEEECHHHHHHHHhcCCcccccCC
Confidence 99 688999999999986 367888887765443322221 357899999999876432 23334678
Q ss_pred EEEEcccccccCc---chHHHHHHHhcc-cCcEEEEeccCC
Q psy13010 171 YLILDEAQAIKSS---SSMRWKLLLGFS-CRNRLLLSGTPI 207 (573)
Q Consensus 171 ~vIiDE~h~~kn~---~s~~~~~~~~l~-~~~~~lLTgTP~ 207 (573)
+||+||+|++... .......+..+. ...++++|||+-
T Consensus 169 ~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~ 209 (230)
T 2oxc_A 169 LFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYP 209 (230)
T ss_dssp EEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCC
T ss_pred EEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccC
Confidence 9999999998543 233333444454 456899999963
No 42
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.59 E-value=4.3e-14 Score=135.13 Aligned_cols=168 Identities=17% Similarity=0.155 Sum_probs=114.4
Q ss_pred CCccCCCCchhhh--------ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHH-HHhhhc---CCCCCEE
Q psy13010 27 TEVERPQPGLFRG--------NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLC-HIAETY---DVWGPFL 94 (573)
Q Consensus 27 ~~~~~~~p~~l~~--------~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~-~~~~~~---~~~~~~L 94 (573)
....+..+..+.. .|+|+|.+++..+.. +..+++..++|+|||+.++..+. .+.... .....+|
T Consensus 26 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~l 101 (236)
T 2pl3_A 26 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVL 101 (236)
T ss_dssp BGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEE
Confidence 3444556655532 689999999976643 67889999999999998655443 333210 1124789
Q ss_pred EEcC-cccHHHHHHHHHHHCCC--ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh---hhccC
Q psy13010 95 IISP-ASTLHNWQQEMERFVPD--FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY---FNRIK 168 (573)
Q Consensus 95 IV~P-~~l~~qW~~el~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~---l~~~~ 168 (573)
||+| ..+..||.+++.++... ..+..+.|........... ...+|+++|++.+...... +....
T Consensus 102 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 102 IISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI----------NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH----------TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred EEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC----------CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 9999 58889999999998754 6777777765443333222 4578999999999765432 33347
Q ss_pred ccEEEEcccccccCc--chHHHHHHHhcc-cCcEEEEeccCCC
Q psy13010 169 WQYLILDEAQAIKSS--SSMRWKLLLGFS-CRNRLLLSGTPIQ 208 (573)
Q Consensus 169 ~~~vIiDE~h~~kn~--~s~~~~~~~~l~-~~~~~lLTgTP~~ 208 (573)
+++||+||+|++.+. .......+..+. ...++++|||+-.
T Consensus 172 ~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 214 (236)
T 2pl3_A 172 LQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTK 214 (236)
T ss_dssp CCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCH
T ss_pred ccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCH
Confidence 889999999998643 233444444454 4458999999743
No 43
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.58 E-value=3.9e-15 Score=140.14 Aligned_cols=133 Identities=17% Similarity=0.247 Sum_probs=90.8
Q ss_pred hhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhc---CCCCCEEEEcCc-ccHHH-HHHHHHHH
Q psy13010 38 RGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY---DVWGPFLIISPA-STLHN-WQQEMERF 112 (573)
Q Consensus 38 ~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~---~~~~~~LIV~P~-~l~~q-W~~el~~~ 112 (573)
...|+|||.+++..+.. +..+++..++|+|||++++..+....... ...+++|||||. .++.| |.+++.++
T Consensus 31 ~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 34799999999986653 67889999999999999987776554321 123589999995 77788 99999888
Q ss_pred CC-CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh--------hhccCccEEEEcccccccCc
Q psy13010 113 VP-DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--------FNRIKWQYLILDEAQAIKSS 183 (573)
Q Consensus 113 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~--------l~~~~~~~vIiDE~h~~kn~ 183 (573)
.+ +.++..+.|............ ...+|+++|++.+...... +....|++||+||+|++...
T Consensus 107 ~~~~~~v~~~~g~~~~~~~~~~~~---------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKISFPEVV---------KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 177 (216)
T ss_dssp HTTTSCEEECCC---CCCCHHHHH---------HHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC------
T ss_pred hccCceEEEEeCCcccchhHHhhc---------cCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC
Confidence 65 477877777543221111110 2467999999999765543 33457899999999998643
No 44
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.57 E-value=3.5e-14 Score=132.70 Aligned_cols=155 Identities=20% Similarity=0.150 Sum_probs=108.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC---C
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP---D 115 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~---~ 115 (573)
.|+|||.+++..+.+ +..+++..++|+|||+.++..+...........++|||+| ..++.||.+++.++.. +
T Consensus 25 ~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 25 KPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 689999999976543 6788999999999998776544443332233347999999 6788999999988763 5
Q ss_pred ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCcc--hHHHHHH
Q psy13010 116 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSSS--SMRWKLL 191 (573)
Q Consensus 116 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~~--s~~~~~~ 191 (573)
.++..+.|........... ....+|+++|++.+..... .+...+++++|+||+|++.... ......+
T Consensus 101 ~~~~~~~g~~~~~~~~~~~---------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~ 171 (206)
T 1vec_A 101 AKVMATTGGTNLRDDIMRL---------DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDII 171 (206)
T ss_dssp CCEEEECSSSCHHHHHHHT---------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHH
T ss_pred ceEEEEeCCccHHHHHHhc---------CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHH
Confidence 6777777765544333321 2467899999999865443 2223468899999999986532 2223333
Q ss_pred Hhcc-cCcEEEEeccCC
Q psy13010 192 LGFS-CRNRLLLSGTPI 207 (573)
Q Consensus 192 ~~l~-~~~~~lLTgTP~ 207 (573)
..+. ...++++|||+-
T Consensus 172 ~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 172 LTLPKNRQILLYSATFP 188 (206)
T ss_dssp HHSCTTCEEEEEESCCC
T ss_pred HhCCccceEEEEEeeCC
Confidence 3343 567899999984
No 45
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.57 E-value=2.8e-14 Score=134.75 Aligned_cols=160 Identities=14% Similarity=0.074 Sum_probs=109.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC----
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP---- 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~---- 114 (573)
.|+|+|.+++..+.+ +..+++..++|+|||+.++..+............+|||+| ..++.||.+++.++..
T Consensus 26 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 26 KPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 589999999987655 6788999999999999865444443332233357999999 6888999999988764
Q ss_pred --CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCcc--hHHH
Q psy13010 115 --DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSSS--SMRW 188 (573)
Q Consensus 115 --~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~~--s~~~ 188 (573)
+..+..+.|........ ......++|+++|++.+..... .+....++++|+||+|++.+.. ....
T Consensus 102 ~~~~~~~~~~g~~~~~~~~---------~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~ 172 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKAL---------EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVD 172 (219)
T ss_dssp GGCCCEEEECCCSHHHHTT---------CCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHH
T ss_pred ccceEEEEEeCCCCHHHHH---------HHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHH
Confidence 45666666664432211 0112467899999998876433 2223467899999999986432 3333
Q ss_pred HHHHhcc-cCcEEEEeccCCCCCHHH
Q psy13010 189 KLLLGFS-CRNRLLLSGTPIQNSMAE 213 (573)
Q Consensus 189 ~~~~~l~-~~~~~lLTgTP~~n~~~e 213 (573)
..+..+. ...++++|||+ ++...+
T Consensus 173 ~i~~~~~~~~~~l~~SAT~-~~~~~~ 197 (219)
T 1q0u_A 173 QIAARMPKDLQMLVFSATI-PEKLKP 197 (219)
T ss_dssp HHHHTSCTTCEEEEEESCC-CGGGHH
T ss_pred HHHHhCCcccEEEEEecCC-CHHHHH
Confidence 4444443 45689999997 334443
No 46
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.56 E-value=5.4e-14 Score=135.50 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=108.9
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC--Cc
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP--DF 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~--~~ 116 (573)
.|+++|.+++..+. .+...++..++|+|||++++..+............+|||+| ..+..||.+++.++.. +.
T Consensus 65 ~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 140 (249)
T 3ber_A 65 KPTKIQIEAIPLAL----QGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV 140 (249)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCHHHHHHHHHHh----CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 68999999997654 36788999999999999875544433333333357999999 6788999999988864 46
Q ss_pred eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh---hhccCccEEEEcccccccCc--chHHHHHH
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY---FNRIKWQYLILDEAQAIKSS--SSMRWKLL 191 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~---l~~~~~~~vIiDE~h~~kn~--~s~~~~~~ 191 (573)
++..+.|........... ....+|+++|++.+...... +.-..+++||+||+|++.+. .....+.+
T Consensus 141 ~~~~~~g~~~~~~~~~~~---------~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~ 211 (249)
T 3ber_A 141 QSAVIVGGIDSMSQSLAL---------AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKIL 211 (249)
T ss_dssp CEEEECTTSCHHHHHHHH---------HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHH
T ss_pred eEEEEECCCChHHHHHHh---------cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHH
Confidence 777777654433322221 14678999999998765432 23346889999999987543 23333444
Q ss_pred Hhcc-cCcEEEEeccCCC
Q psy13010 192 LGFS-CRNRLLLSGTPIQ 208 (573)
Q Consensus 192 ~~l~-~~~~~lLTgTP~~ 208 (573)
..+. ...++++|||+-.
T Consensus 212 ~~~~~~~~~l~~SAT~~~ 229 (249)
T 3ber_A 212 KVIPRDRKTFLFSATMTK 229 (249)
T ss_dssp HSSCSSSEEEEEESSCCH
T ss_pred HhCCCCCeEEEEeccCCH
Confidence 4443 5578999999853
No 47
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.56 E-value=4.8e-14 Score=133.63 Aligned_cols=154 Identities=21% Similarity=0.180 Sum_probs=103.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHH-HHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC--C
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQS-IAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP--D 115 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~-ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~--~ 115 (573)
.|+|||.+++..+.+ +..+++..++|+|||+++ +.++..+... .....+|||+| ..+..||.+++.++.. +
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (224)
T 1qde_A 36 EPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTS-VKAPQALMLAPTRELALQIQKVVMALAFHMD 110 (224)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTT-CCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhcc-CCCceEEEEECCHHHHHHHHHHHHHHhcccC
Confidence 689999999976543 677899999999999985 4444444332 33358999999 5888999999999865 4
Q ss_pred ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCc--chHHHHHH
Q psy13010 116 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSS--SSMRWKLL 191 (573)
Q Consensus 116 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~--~s~~~~~~ 191 (573)
.++..+.|......... .....+|+++|++.+..... .+...++++||+||+|++... .......+
T Consensus 111 ~~~~~~~g~~~~~~~~~----------~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~ 180 (224)
T 1qde_A 111 IKVHACIGGTSFVEDAE----------GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF 180 (224)
T ss_dssp CCEEEECC--------------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHH
T ss_pred ceEEEEeCCcchHHHHh----------cCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHH
Confidence 66777777644322221 11347899999999865432 222346899999999997542 22333334
Q ss_pred Hhcc-cCcEEEEeccCCC
Q psy13010 192 LGFS-CRNRLLLSGTPIQ 208 (573)
Q Consensus 192 ~~l~-~~~~~lLTgTP~~ 208 (573)
..+. ...++++|||+-.
T Consensus 181 ~~~~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 181 TLLPPTTQVVLLSATMPN 198 (224)
T ss_dssp HHSCTTCEEEEEESSCCH
T ss_pred HhCCccCeEEEEEeecCH
Confidence 4443 4468999999853
No 48
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.2e-13 Score=155.15 Aligned_cols=143 Identities=14% Similarity=0.154 Sum_probs=104.3
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKV 118 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v 118 (573)
.|+|||.+++..+.+ +...+++.++|+|||+++...+......+ +.+||++| ..|..||.+++.++++ ++
T Consensus 86 ~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~~g---~rvL~l~PtkaLa~Q~~~~l~~~~~--~v 156 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLKNK---QRVIYTSPIKALSNQKYRELLAEFG--DV 156 (1010)
T ss_dssp CCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHHHS--CE
T ss_pred CCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhccC---CeEEEECChHHHHHHHHHHHHHHhC--CE
Confidence 699999999987654 67789999999999998865554444332 58999999 6899999999999886 56
Q ss_pred EeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCcc-hHHH-HHHHhc
Q psy13010 119 VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSSS-SMRW-KLLLGF 194 (573)
Q Consensus 119 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~~-s~~~-~~~~~l 194 (573)
.++.|.... ....+|+|+|++.+.+... ...-..+++||+||+|++.+.. ...+ ..+..+
T Consensus 157 glltGd~~~----------------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l 220 (1010)
T 2xgj_A 157 GLMTGDITI----------------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILL 220 (1010)
T ss_dssp EEECSSCEE----------------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS
T ss_pred EEEeCCCcc----------------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhc
Confidence 666665321 1356899999999876432 1222468999999999997653 2222 333334
Q ss_pred -ccCcEEEEeccCC
Q psy13010 195 -SCRNRLLLSGTPI 207 (573)
Q Consensus 195 -~~~~~~lLTgTP~ 207 (573)
.....++||||+-
T Consensus 221 ~~~~~il~LSATi~ 234 (1010)
T 2xgj_A 221 PDKVRYVFLSATIP 234 (1010)
T ss_dssp CTTCEEEEEECCCT
T ss_pred CCCCeEEEEcCCCC
Confidence 3467899999953
No 49
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.52 E-value=9.8e-14 Score=132.71 Aligned_cols=169 Identities=15% Similarity=0.122 Sum_probs=109.4
Q ss_pred CccCCCCchhhh--------ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-
Q psy13010 28 EVERPQPGLFRG--------NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP- 98 (573)
Q Consensus 28 ~~~~~~p~~l~~--------~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P- 98 (573)
...+.+++.+.. .|+|+|.+++..+.+ +..+++..++|+|||++++..+............+|||+|
T Consensus 32 f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 107 (237)
T 3bor_A 32 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPT 107 (237)
T ss_dssp GGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred hhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECc
Confidence 444455555432 599999999976543 6778999999999998865544444332223358999999
Q ss_pred cccHHHHHHHHHHHCC--CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEE
Q psy13010 99 ASTLHNWQQEMERFVP--DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLIL 174 (573)
Q Consensus 99 ~~l~~qW~~el~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIi 174 (573)
..+..||.+++.++.. +..+..+.|........... ....++|+++|++.+..... .+....+++||+
T Consensus 108 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l--------~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 108 RELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKL--------QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECC---------------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHH--------hcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 6888999999999875 35666666654332222111 11347899999998765432 233346889999
Q ss_pred cccccccC--cchHHHHHHHhcc-cCcEEEEeccCCC
Q psy13010 175 DEAQAIKS--SSSMRWKLLLGFS-CRNRLLLSGTPIQ 208 (573)
Q Consensus 175 DE~h~~kn--~~s~~~~~~~~l~-~~~~~lLTgTP~~ 208 (573)
||+|++.. ........+..+. ....+++|||+-.
T Consensus 180 DEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~ 216 (237)
T 3bor_A 180 DEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPT 216 (237)
T ss_dssp ESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCH
T ss_pred CCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCH
Confidence 99998743 3344445555554 4567999999843
No 50
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.50 E-value=2.6e-13 Score=131.12 Aligned_cols=155 Identities=15% Similarity=0.208 Sum_probs=105.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHH-Hhhhc--------CCCCCEEEEcC-cccHHHHHHHH
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCH-IAETY--------DVWGPFLIISP-ASTLHNWQQEM 109 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~-~~~~~--------~~~~~~LIV~P-~~l~~qW~~el 109 (573)
.|+|+|.+++..+.+ +..+++..++|+|||+.++..+.. +.... .....+|||+| ..+..||.+++
T Consensus 45 ~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 45 RPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 689999999976644 677899999999999986554443 33221 11247999999 68889999999
Q ss_pred HHHCCC--ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh--hhccCccEEEEcccccccCc--
Q psy13010 110 ERFVPD--FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIKSS-- 183 (573)
Q Consensus 110 ~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~--l~~~~~~~vIiDE~h~~kn~-- 183 (573)
.++... .++..+.|........... ...++|+++|++.+...... +.-..+++||+||+|++.+.
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~~---------~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~ 191 (253)
T 1wrb_A 121 QKFSLNTPLRSCVVYGGADTHSQIREV---------QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGF 191 (253)
T ss_dssp HHHHTTSSCCEEEECSSSCSHHHHHHH---------SSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTC
T ss_pred HHHhccCCceEEEEECCCCHHHHHHHh---------CCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCch
Confidence 988643 5666666654433333221 14578999999999765432 22346789999999997543
Q ss_pred chHHHHHHHhcc-----cCcEEEEeccCC
Q psy13010 184 SSMRWKLLLGFS-----CRNRLLLSGTPI 207 (573)
Q Consensus 184 ~s~~~~~~~~l~-----~~~~~lLTgTP~ 207 (573)
.......+..+. ...++++||||-
T Consensus 192 ~~~~~~i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 192 EPQIRKIIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp HHHHHHHHHSSCCCCGGGCEEEEEESSCC
T ss_pred HHHHHHHHhhccCCCCCCcEEEEEEEeCC
Confidence 233333344222 345899999974
No 51
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.49 E-value=8.7e-14 Score=157.71 Aligned_cols=156 Identities=19% Similarity=0.164 Sum_probs=108.1
Q ss_pred hccHHHHHHHHHHHHHHHhC----------CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHH
Q psy13010 39 GNLKHYQLKGMNWLANLYDQ----------GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQ 107 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~----------~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~ 107 (573)
..|+|||..|+..+++.+.. +.+|++.+.+|+|||++++.++..+.. .+...++||||| ..|..||.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~-~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATE-LDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTT-CTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHh-cCCCceEEEEeCcHHHHHHHHH
Confidence 36999999999998875432 357899999999999999777754433 233358999999 889999999
Q ss_pred HHHHHCCCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh---h-hccCccEEEEcccccccCc
Q psy13010 108 EMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY---F-NRIKWQYLILDEAQAIKSS 183 (573)
Q Consensus 108 el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~---l-~~~~~~~vIiDE~h~~kn~ 183 (573)
++..+.+.. +..+. .. ..+.... .....+|+++|+.++...... + .-..+.+||+||||+....
T Consensus 349 ~f~~f~~~~---v~~~~-s~-~~l~~~L-------~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~ 416 (1038)
T 2w00_A 349 EYQRFSPDS---VNGSE-NT-AGLKRNL-------DKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG 416 (1038)
T ss_dssp HHHTTSTTC---SSSSC-CC-HHHHHHH-------HCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH
T ss_pred HHHHhcccc---ccccc-CH-HHHHHHh-------cCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch
Confidence 999987541 22221 11 1111110 014568999999999875432 1 1126899999999997532
Q ss_pred chHHHHHH-HhcccCcEEEEeccCCCC
Q psy13010 184 SSMRWKLL-LGFSCRNRLLLSGTPIQN 209 (573)
Q Consensus 184 ~s~~~~~~-~~l~~~~~~lLTgTP~~n 209 (573)
..++.+ ..+....+++|||||...
T Consensus 417 --~~~~~I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 417 --EAQKNLKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp --HHHHHHHHHCSSEEEEEEESSCCCS
T ss_pred --HHHHHHHHhCCcccEEEEeCCcccc
Confidence 223344 445667899999999864
No 52
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.48 E-value=3e-12 Score=145.86 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=106.1
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCce
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFK 117 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~ 117 (573)
-.|+|+|.+++..+. .+...++..++|+|||+++...+......+ +.+||++| ..+..||.+++.+.+++.+
T Consensus 38 f~l~~~Q~~aI~~il----~g~~vlv~apTGsGKTlv~~~~i~~~~~~g---~~vlvl~PtraLa~Q~~~~l~~~~~~~~ 110 (997)
T 4a4z_A 38 FELDTFQKEAVYHLE----QGDSVFVAAHTSAGKTVVAEYAIAMAHRNM---TKTIYTSPIKALSNQKFRDFKETFDDVN 110 (997)
T ss_dssp SCCCHHHHHHHHHHH----TTCEEEEECCTTSCSHHHHHHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHTTC--CC
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEECCCCcHHHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHHcCCCe
Confidence 369999999987553 367789999999999987655555444331 47899999 8899999999999888888
Q ss_pred EEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCc--chHHHHHHHh
Q psy13010 118 VVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSS--SSMRWKLLLG 193 (573)
Q Consensus 118 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~--~s~~~~~~~~ 193 (573)
+..+.|.... ....+|+++|.+.+.+... ...-.++++||+||+|++.+. .......+..
T Consensus 111 v~~l~G~~~~----------------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~ 174 (997)
T 4a4z_A 111 IGLITGDVQI----------------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM 174 (997)
T ss_dssp EEEECSSCEE----------------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH
T ss_pred EEEEeCCCcc----------------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHh
Confidence 8888875421 1457899999999866432 122346899999999998653 2223344444
Q ss_pred cc-cCcEEEEeccCCC
Q psy13010 194 FS-CRNRLLLSGTPIQ 208 (573)
Q Consensus 194 l~-~~~~~lLTgTP~~ 208 (573)
+. ....++|||||-+
T Consensus 175 l~~~v~iIlLSAT~~n 190 (997)
T 4a4z_A 175 LPQHVKFILLSATVPN 190 (997)
T ss_dssp SCTTCEEEEEECCCTT
T ss_pred cccCCCEEEEcCCCCC
Confidence 43 4578999999653
No 53
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.45 E-value=2e-12 Score=148.68 Aligned_cols=142 Identities=14% Similarity=0.131 Sum_probs=102.5
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKV 118 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v 118 (573)
.|+|+|.+++..+ ..+...|++.++|+|||+++...+......+ +.+||++| ..|..||.+++.++++ .+
T Consensus 184 ~ltp~Q~~AI~~i----~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g---~rvlvl~PtraLa~Q~~~~l~~~~~--~V 254 (1108)
T 3l9o_A 184 TLDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLKNK---QRVIYTSPIKALSNQKYRELLAEFG--DV 254 (1108)
T ss_dssp CCCHHHHHHHHHH----TTTCCEEEECCSSSHHHHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHHTS--SE
T ss_pred CCCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHHhcC---CeEEEEcCcHHHHHHHHHHHHHHhC--Cc
Confidence 6899999998754 4578889999999999998865555544332 57999999 7788999999999886 45
Q ss_pred EeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh--hhccCccEEEEcccccccCcc--hHHHHHHHhc
Q psy13010 119 VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIKSSS--SMRWKLLLGF 194 (573)
Q Consensus 119 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~--l~~~~~~~vIiDE~h~~kn~~--s~~~~~~~~l 194 (573)
.++.|... .....+|+|+|.+.+.+.... ..-.++++||+||+|++.+.. ......+..+
T Consensus 255 glltGd~~----------------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l 318 (1108)
T 3l9o_A 255 GLMTGDIT----------------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILL 318 (1108)
T ss_dssp EEECSSCB----------------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHS
T ss_pred cEEeCccc----------------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhc
Confidence 55666432 125678999999988764321 112357899999999997643 2222233334
Q ss_pred c-cCcEEEEeccC
Q psy13010 195 S-CRNRLLLSGTP 206 (573)
Q Consensus 195 ~-~~~~~lLTgTP 206 (573)
. ....++||||+
T Consensus 319 ~~~~qvl~lSATi 331 (1108)
T 3l9o_A 319 PDKVRYVFLSATI 331 (1108)
T ss_dssp CTTSEEEEEECSC
T ss_pred CCCceEEEEcCCC
Confidence 3 45789999993
No 54
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.45 E-value=4.7e-13 Score=128.67 Aligned_cols=155 Identities=16% Similarity=0.175 Sum_probs=102.7
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHH-HHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCC--
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFL-CHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPD-- 115 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~-~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~-- 115 (573)
.|+|+|.+++..+.+ +..+++..++|+|||+.++..+ ..+.........+|||+| ..+..||.+++.++...
T Consensus 51 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 599999999975543 6778999999999999864443 344322222236999999 67889999999998753
Q ss_pred ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh----hhccCccEEEEcccccccC-----cchH
Q psy13010 116 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY----FNRIKWQYLILDEAQAIKS-----SSSM 186 (573)
Q Consensus 116 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~----l~~~~~~~vIiDE~h~~kn-----~~s~ 186 (573)
.++..+.|...... .........++|+++|++.+...... +.-.++++||+||+|++.. ....
T Consensus 127 ~~~~~~~~~~~~~~--------~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 198 (245)
T 3dkp_A 127 FRIHMIHKAAVAAK--------KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQ 198 (245)
T ss_dssp CCEECCCHHHHHHT--------TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHH
T ss_pred ceEEEEecCccHHH--------HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHH
Confidence 45555544322111 00112235679999999999765432 2234678999999999854 2222
Q ss_pred HHHHHHhc--ccCcEEEEeccC
Q psy13010 187 RWKLLLGF--SCRNRLLLSGTP 206 (573)
Q Consensus 187 ~~~~~~~l--~~~~~~lLTgTP 206 (573)
....+..+ .....+++|||+
T Consensus 199 ~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 199 LASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp HHHHHHHCCCTTCEEEEEESSC
T ss_pred HHHHHHhcCCCCcEEEEEeccC
Confidence 22333333 245689999998
No 55
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.43 E-value=5.5e-12 Score=144.98 Aligned_cols=157 Identities=16% Similarity=0.273 Sum_probs=110.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHC-CCce
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFV-PDFK 117 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~-~~~~ 117 (573)
.|.|+|..++..++ .+...++..++|+|||..++..+...... .+.+|||+| ..|+.|+.+.+.++. .+.+
T Consensus 78 ~pt~iQ~~ai~~il----~g~dvlv~ApTGSGKTl~~l~~il~~~~~---~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~ 150 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLARK---GKKSALVFPTVTLVKQTLERLQKLADEKVK 150 (1104)
T ss_dssp CCCHHHHHHHHHHT----TTCCEEECCSTTCCHHHHHHHHHHHHHTT---TCCEEEEESSHHHHHHHHHHHHTTSCTTSC
T ss_pred CCCHHHHHHHHHHH----cCCCEEEEeCCCCcHHHHHHHHHHHHHhc---CCeEEEEechHHHHHHHHHHHHHhhCCCCe
Confidence 58899999987553 36788999999999999665554444432 247899999 788889999999865 3468
Q ss_pred EEeecCChhH---HHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcc----------
Q psy13010 118 VVPYWGSPQE---RKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSS---------- 184 (573)
Q Consensus 118 v~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~---------- 184 (573)
+..+.|.... ...+... . .+.++|+|+|.+.+......+....+++||+||+|.+....
T Consensus 151 v~~l~Gg~~~~er~~~~~~l---~-----~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~ 222 (1104)
T 4ddu_A 151 IFGFYSSMKKEEKEKFEKSF---E-----EDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 222 (1104)
T ss_dssp EEEECTTCCTTHHHHHHHHH---H-----TSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTS
T ss_pred EEEEeCCCCHHHHHHHHHHH---h-----CCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhc
Confidence 8888876543 2222221 1 14578999999999777666666789999999999864321
Q ss_pred ---hH-HHHHHHhc------------ccCcEEEEeccCCCCCH
Q psy13010 185 ---SM-RWKLLLGF------------SCRNRLLLSGTPIQNSM 211 (573)
Q Consensus 185 ---s~-~~~~~~~l------------~~~~~~lLTgTP~~n~~ 211 (573)
.. ....+..+ .....+++||||.+...
T Consensus 223 gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~ 265 (1104)
T 4ddu_A 223 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGI 265 (1104)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSS
T ss_pred CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHH
Confidence 11 22233322 23467999999876553
No 56
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.42 E-value=2.2e-12 Score=122.43 Aligned_cols=155 Identities=18% Similarity=0.219 Sum_probs=101.7
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHH-HHhhh-----cCCCCCEEEEcC-cccHHHHHHHHHHH
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLC-HIAET-----YDVWGPFLIISP-ASTLHNWQQEMERF 112 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~-~~~~~-----~~~~~~~LIV~P-~~l~~qW~~el~~~ 112 (573)
.++|+|.+++..+. .+..+++..++|+|||+.++..+. .+... ......+|||+| ..+..||.+++.++
T Consensus 42 ~~~~~Q~~~i~~~~----~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 42 KPTPIQSQAWPIIL----QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 69999999997654 477889999999999987654333 32211 112346899999 67889999999998
Q ss_pred C-CCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhccCccEEEEcccccccCc--chHH
Q psy13010 113 V-PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIKSS--SSMR 187 (573)
Q Consensus 113 ~-~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~~~~~~vIiDE~h~~kn~--~s~~ 187 (573)
. .+.++..+.|........... ...++|+++|++.+..... .+.-.++++||+||+|++.+. ....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~ 188 (228)
T 3iuy_A 118 SYKGLKSICIYGGRNRNGQIEDI---------SKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQI 188 (228)
T ss_dssp CCTTCCEEEECC------CHHHH---------HSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHH
T ss_pred cccCceEEEEECCCChHHHHHHh---------cCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHH
Confidence 5 456776666654333222221 1347899999999876432 222345789999999997543 2333
Q ss_pred HHHHHhcc-cCcEEEEeccCC
Q psy13010 188 WKLLLGFS-CRNRLLLSGTPI 207 (573)
Q Consensus 188 ~~~~~~l~-~~~~~lLTgTP~ 207 (573)
...+..+. ....+++|||.-
T Consensus 189 ~~i~~~~~~~~~~l~~SAT~~ 209 (228)
T 3iuy_A 189 RKILLDVRPDRQTVMTSATWP 209 (228)
T ss_dssp HHHHHHSCSSCEEEEEESCCC
T ss_pred HHHHHhCCcCCeEEEEEeeCC
Confidence 34444443 456799999953
No 57
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.42 E-value=9.6e-12 Score=138.48 Aligned_cols=151 Identities=19% Similarity=0.195 Sum_probs=104.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHH-HHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC-Cc
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFL-CHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP-DF 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~-~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~-~~ 116 (573)
.|+|+|.+++..+ +..+...+++.++|+|||.++...+ ..+... + +.+++++| ..+..||.+++.++.+ +.
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~--~~il~i~P~r~La~q~~~~~~~~~~~g~ 103 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-G--GKAIYVTPLRALTNEKYLTFKDWELIGF 103 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-C--SEEEEECSCHHHHHHHHHHHGGGGGGTC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-C--CeEEEEeCcHHHHHHHHHHHHHhhcCCC
Confidence 6899999998641 3457888999999999999985444 444322 2 58999999 5588899999965543 56
Q ss_pred eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh--hhccCccEEEEcccccccCcc--hHHHHHHH
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIKSSS--SMRWKLLL 192 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~--l~~~~~~~vIiDE~h~~kn~~--s~~~~~~~ 192 (573)
++..+.|...... ......+|+++|++.+...... ..-.++++||+||+|.+.+.. ......+.
T Consensus 104 ~v~~~~G~~~~~~------------~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~ 171 (715)
T 2va8_A 104 KVAMTSGDYDTDD------------AWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTI 171 (715)
T ss_dssp CEEECCSCSSSCC------------GGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHH
T ss_pred EEEEEeCCCCCch------------hhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHH
Confidence 7777777532211 0113678999999988764332 112367899999999986522 22223333
Q ss_pred hcccCcEEEEeccCCC
Q psy13010 193 GFSCRNRLLLSGTPIQ 208 (573)
Q Consensus 193 ~l~~~~~~lLTgTP~~ 208 (573)
.+...+.+++|||+-+
T Consensus 172 ~~~~~~ii~lSATl~n 187 (715)
T 2va8_A 172 RAKRRNLLALSATISN 187 (715)
T ss_dssp HHHTSEEEEEESCCTT
T ss_pred hcccCcEEEEcCCCCC
Confidence 4456788999999853
No 58
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.40 E-value=1.7e-12 Score=144.22 Aligned_cols=149 Identities=17% Similarity=0.114 Sum_probs=102.9
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC-Cce
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP-DFK 117 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~-~~~ 117 (573)
.|+|+|.+++..+ ..+...+++.++|+|||.++...+...... .+++|+++| ..+..||.+++.++.+ +.+
T Consensus 25 ~l~~~Q~~~i~~i----~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 25 ELFPPQAEAVEKV----FSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp CCCCCCHHHHHHH----TTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHH----hCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 6899999999753 347889999999999999985444333322 258999999 5588999999965543 567
Q ss_pred EEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhh--ccCccEEEEcccccccC--cchHHHHHHHh
Q psy13010 118 VVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFN--RIKWQYLILDEAQAIKS--SSSMRWKLLLG 193 (573)
Q Consensus 118 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~--~~~~~~vIiDE~h~~kn--~~s~~~~~~~~ 193 (573)
+..+.|...... ......+|+++|++.+......-. -.++++||+||+|.+.+ ........+..
T Consensus 98 v~~~~G~~~~~~------------~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~ 165 (702)
T 2p6r_A 98 IGISTGDYESRD------------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTK 165 (702)
T ss_dssp EEEECSSCBCCS------------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHH
T ss_pred EEEEeCCCCcch------------hhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHH
Confidence 877777532211 122478999999998866433211 23678999999999865 22222222222
Q ss_pred c----ccCcEEEEeccCC
Q psy13010 194 F----SCRNRLLLSGTPI 207 (573)
Q Consensus 194 l----~~~~~~lLTgTP~ 207 (573)
+ ...+.+++|||+-
T Consensus 166 l~~~~~~~~ii~lSATl~ 183 (702)
T 2p6r_A 166 MRRMNKALRVIGLSATAP 183 (702)
T ss_dssp HHHHCTTCEEEEEECCCT
T ss_pred HHhcCcCceEEEECCCcC
Confidence 3 2457899999975
No 59
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.40 E-value=4.1e-12 Score=123.24 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=104.5
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHH-HHhhhc---CCCCCEEEEcC-cccHHHHHHHHHHHCC
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLC-HIAETY---DVWGPFLIISP-ASTLHNWQQEMERFVP 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~-~~~~~~---~~~~~~LIV~P-~~l~~qW~~el~~~~~ 114 (573)
.|+|+|.+++..+.. +..+++..++|+|||+.++..+. .+.... .....+|||+| ..++.||.+++.++..
T Consensus 76 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 489999999976654 56789999999999998654433 333211 11246899999 7888999999999875
Q ss_pred C--ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhh---hhccCccEEEEcccccccCc--chHH
Q psy13010 115 D--FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY---FNRIKWQYLILDEAQAIKSS--SSMR 187 (573)
Q Consensus 115 ~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~---l~~~~~~~vIiDE~h~~kn~--~s~~ 187 (573)
. ..+..+.|............ ...+|+++|++.+...... +.-.++++||+||+|++... ....
T Consensus 152 ~~~~~~~~~~g~~~~~~~~~~~~---------~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l 222 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEAQKLG---------NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEEL 222 (262)
T ss_dssp TCCSCEEEECSSSCHHHHHHHHH---------HCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHH
T ss_pred hcCceEEEEECCCCHHHHHHHhc---------CCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHH
Confidence 3 55555666544333222211 2368999999988654432 22345789999999997543 2333
Q ss_pred HHHHHhcc-cCcEEEEeccCCC
Q psy13010 188 WKLLLGFS-CRNRLLLSGTPIQ 208 (573)
Q Consensus 188 ~~~~~~l~-~~~~~lLTgTP~~ 208 (573)
...+..+. ....+++|||+-.
T Consensus 223 ~~i~~~~~~~~q~l~~SAT~~~ 244 (262)
T 3ly5_A 223 KQIIKLLPTRRQTMLFSATQTR 244 (262)
T ss_dssp HHHHHHSCSSSEEEEECSSCCH
T ss_pred HHHHHhCCCCCeEEEEEecCCH
Confidence 33444443 4568999999753
No 60
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.38 E-value=2.1e-12 Score=143.72 Aligned_cols=151 Identities=18% Similarity=0.129 Sum_probs=105.3
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHH-HHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC-Cc
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQS-IAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP-DF 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~-ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~-~~ 116 (573)
.|+|+|.+++..+ +..+...+++.++|+|||.++ ++++..+...+ +.+|+|+| ..+..||.+++.++.+ +.
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~---~~~l~i~P~raLa~q~~~~~~~l~~~g~ 96 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQG---GKAVYIVPLKALAEEKFQEFQDWEKIGL 96 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC---SEEEEECSSGGGHHHHHHHTGGGGGGTC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC---CEEEEEcCcHHHHHHHHHHHHHHHhcCC
Confidence 6899999998641 334778899999999999998 45555555332 58999999 7889999999976543 57
Q ss_pred eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhh--ccCccEEEEcccccccC--cchHHHHHHH
Q psy13010 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFN--RIKWQYLILDEAQAIKS--SSSMRWKLLL 192 (573)
Q Consensus 117 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~--~~~~~~vIiDE~h~~kn--~~s~~~~~~~ 192 (573)
++..+.|...... ......+|+++|++.+......-. -.++++||+||+|.+.. ........+.
T Consensus 97 ~v~~~~G~~~~~~------------~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~ 164 (720)
T 2zj8_A 97 RVAMATGDYDSKD------------EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILA 164 (720)
T ss_dssp CEEEECSCSSCCC------------GGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHH
T ss_pred EEEEecCCCCccc------------cccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHH
Confidence 8888877532211 011467899999998865433211 23678999999999875 2222333333
Q ss_pred hcc-cCcEEEEeccCCC
Q psy13010 193 GFS-CRNRLLLSGTPIQ 208 (573)
Q Consensus 193 ~l~-~~~~~lLTgTP~~ 208 (573)
.++ ..+.+++|||+-+
T Consensus 165 ~l~~~~~ii~lSATl~n 181 (720)
T 2zj8_A 165 HMLGKAQIIGLSATIGN 181 (720)
T ss_dssp HHBTTBEEEEEECCCSC
T ss_pred HhhcCCeEEEEcCCcCC
Confidence 444 5678999999753
No 61
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.37 E-value=9.7e-12 Score=119.16 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=111.3
Q ss_pred CCCCccCCCCchhh--------hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHH-HHHHhhhc----CCCC
Q psy13010 25 FSTEVERPQPGLFR--------GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAF-LCHIAETY----DVWG 91 (573)
Q Consensus 25 ~~~~~~~~~p~~l~--------~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~-~~~~~~~~----~~~~ 91 (573)
......+..|..+. ..++|+|.+++..+.. +...++..++|+|||+..+.. +..+.... ....
T Consensus 28 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 103 (242)
T 3fe2_A 28 VLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP 103 (242)
T ss_dssp CSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCC
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCC
Confidence 34445556666663 2599999999976654 678899999999999986544 33333211 1234
Q ss_pred CEEEEcC-cccHHHHHHHHHHHC--CCceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh--hhhc
Q psy13010 92 PFLIISP-ASTLHNWQQEMERFV--PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNR 166 (573)
Q Consensus 92 ~~LIV~P-~~l~~qW~~el~~~~--~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~--~l~~ 166 (573)
.+|||+| ..+..||.+.+.++. .+.++..+.|............ ..++|+++|++.+..... .+.-
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~I~v~Tp~~l~~~l~~~~~~~ 174 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---------RGVEICIATPGRLIDFLECGKTNL 174 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---------HCCSEEEECHHHHHHHHHHTSCCC
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---------CCCCEEEECHHHHHHHHHcCCCCc
Confidence 6899999 778889998888764 2466766666544333332221 246899999998865443 2223
Q ss_pred cCccEEEEcccccccCc--chHHHHHHHhc-ccCcEEEEeccC
Q psy13010 167 IKWQYLILDEAQAIKSS--SSMRWKLLLGF-SCRNRLLLSGTP 206 (573)
Q Consensus 167 ~~~~~vIiDE~h~~kn~--~s~~~~~~~~l-~~~~~~lLTgTP 206 (573)
.++++||+||+|++... .......+..+ .....+++|||+
T Consensus 175 ~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 175 RRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp TTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred ccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeec
Confidence 46789999999997543 22333333344 345689999996
No 62
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.19 E-value=1.1e-10 Score=115.30 Aligned_cols=154 Identities=18% Similarity=0.197 Sum_probs=100.5
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHH-HHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHC---C
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSI-AFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFV---P 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~i-a~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~---~ 114 (573)
.++++|..++..++. ..+...++..++|+|||+..+ .++..+... .....+|||+| ..|..|+.+.+..+. +
T Consensus 114 ~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 114 RPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-NKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp SCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTT-SCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhcc-CCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 578999999864432 113678999999999998754 444443332 22236899999 778889888887765 4
Q ss_pred CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHh---hhhccCccEEEEcccccccCc-c-hHHHH
Q psy13010 115 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK---YFNRIKWQYLILDEAQAIKSS-S-SMRWK 189 (573)
Q Consensus 115 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~---~l~~~~~~~vIiDE~h~~kn~-~-s~~~~ 189 (573)
+..+..+.|...... ......+|+|+|.+.+..... .+.-....+||+||+|++... . .....
T Consensus 191 ~~~~~~~~~~~~~~~------------~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~ 258 (300)
T 3fmo_B 191 ELKLAYAVRGNKLER------------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 258 (300)
T ss_dssp TCCEEEESTTCCCCT------------TCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHH
T ss_pred CcEEEEEeCCccHhh------------hhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHH
Confidence 567776666532111 113566899999999866542 222346789999999997541 1 12222
Q ss_pred HHHh-c-ccCcEEEEeccCCC
Q psy13010 190 LLLG-F-SCRNRLLLSGTPIQ 208 (573)
Q Consensus 190 ~~~~-l-~~~~~~lLTgTP~~ 208 (573)
.+.. + .....+++|||+-.
T Consensus 259 ~i~~~~~~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 259 RIQRMLPRNCQMLLFSATFED 279 (300)
T ss_dssp HHHTTSCTTCEEEEEESCCCH
T ss_pred HHHHhCCCCCEEEEEeccCCH
Confidence 2222 2 23468999999854
No 63
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.15 E-value=5.3e-10 Score=128.55 Aligned_cols=152 Identities=17% Similarity=0.188 Sum_probs=103.9
Q ss_pred cHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCC--c-
Q psy13010 41 LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPD--F- 116 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~--~- 116 (573)
+ |+|.+++..++ .+...++..++|+|||+.++.++..+... ...+|||+| ..|..|+.+.+.++++. .
T Consensus 58 p-~iQ~~ai~~il----~g~dvlv~apTGSGKTl~~lp~l~~~~~~---~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~ 129 (1054)
T 1gku_B 58 R-AIQKMWAKRIL----RKESFAATAPTGVGKTSFGLAMSLFLALK---GKRCYVIFPTSLLVIQAAETIRKYAEKAGVG 129 (1054)
T ss_dssp C-HHHHHHHHHHH----TTCCEECCCCBTSCSHHHHHHHHHHHHTT---SCCEEEEESCHHHHHHHHHHHHHHHTTTCCS
T ss_pred H-HHHHHHHHHHH----hCCCEEEEcCCCCCHHHHHHHHHHHHhhc---CCeEEEEeccHHHHHHHHHHHHHHHhhcCCC
Confidence 7 99999987554 36788999999999998555555555443 247899999 77888999999988754 4
Q ss_pred ---eEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHh
Q psy13010 117 ---KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLG 193 (573)
Q Consensus 117 ---~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~ 193 (573)
++..+.|............ .....+|+++|.+.+......+. .+++||+||+|++.+.....-..+..
T Consensus 130 ~~~~v~~~~Gg~~~~~~~~~~~-------~l~~~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~~~~~~i~~~ 200 (1054)
T 1gku_B 130 TENLIGYYHGRIPKREKENFMQ-------NLRNFKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKASKNVDKLLHL 200 (1054)
T ss_dssp GGGSEEECCSSCCSHHHHHHHH-------SGGGCSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTHHHHHHHHH
T ss_pred ccceEEEEeCCCChhhHHHHHh-------hccCCCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhccccHHHHHHH
Confidence 6777777644332111110 01127899999999987655543 78899999999987643333333333
Q ss_pred c------------ccCcEEEEeccCCCC
Q psy13010 194 F------------SCRNRLLLSGTPIQN 209 (573)
Q Consensus 194 l------------~~~~~~lLTgTP~~n 209 (573)
+ .....+++|||+...
T Consensus 201 lgf~~~~~~~~~~~~~q~~l~SAT~t~~ 228 (1054)
T 1gku_B 201 LGFHYDLKTKSWVGEARGCLMVSTATAK 228 (1054)
T ss_dssp TTEEEETTTTEEEECCSSEEEECCCCSC
T ss_pred hCcchhhhhhhcccCCceEEEEecCCCc
Confidence 3 123467888886654
No 64
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.04 E-value=1.3e-09 Score=113.52 Aligned_cols=128 Identities=13% Similarity=0.084 Sum_probs=75.8
Q ss_pred CCCeEEeCCCCCCHHHHH-HHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhh
Q psy13010 59 GINGILADEMGLGKTVQS-IAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWD 136 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~-ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~ 136 (573)
+...++..++|+|||..+ ++++..+...+ ..+||++| ..|..|+.+.+. +..+..+.|.-...
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g---~~~lvl~Pt~~La~Q~~~~~~----~~~v~~~~~~~~~~-------- 66 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKR---LRTVILAPTRVVASEMYEALR----GEPIRYMTPAVQSE-------- 66 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHTT----TSCEEEC---------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEECcHHHHHHHHHHHhC----CCeEEEEecCcccc--------
Confidence 456789999999999997 45554544432 47899999 667778776664 45555444431110
Q ss_pred hcccccCCCCceEEEeehHhHHhh-HhhhhccCccEEEEcccccccCcch-HHHHHHHhc---ccCcEEEEeccCCC
Q psy13010 137 MKNLHTKDASFHVVITSYQLVVSD-FKYFNRIKWQYLILDEAQAIKSSSS-MRWKLLLGF---SCRNRLLLSGTPIQ 208 (573)
Q Consensus 137 ~~~~~~~~~~~~i~i~sy~~~~~~-~~~l~~~~~~~vIiDE~h~~kn~~s-~~~~~~~~l---~~~~~~lLTgTP~~ 208 (573)
......+.+++...+... .....-.++++||+||+|++ +..+ .....+..+ .....+++||||..
T Consensus 67 ------~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~ 136 (431)
T 2v6i_A 67 ------RTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPG 136 (431)
T ss_dssp --------CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTT
T ss_pred ------CCCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCc
Confidence 012233455566655432 12211246799999999998 3222 222233333 25678999999986
No 65
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.03 E-value=6.4e-08 Score=105.46 Aligned_cols=67 Identities=15% Similarity=0.060 Sum_probs=60.2
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCC
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGIL 564 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~ 564 (573)
..|..++.+.|.+....|..|||||......+.|...|...||++..++|+....+|.-+...|+.+
T Consensus 443 ~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G 509 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG 509 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC
Confidence 4589999999988777889999999999999999999999999999999999877777777888765
No 66
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.98 E-value=5.6e-08 Score=105.93 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=58.7
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCC
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGIL 564 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~ 564 (573)
..|..++.+++.+....+.+|||||......+.|...|...|+++..++|+++..+|..+...|+..
T Consensus 415 ~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g 481 (844)
T 1tf5_A 415 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG 481 (844)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC
Confidence 4588999999988766788999999999999999999999999999999999988887666677653
No 67
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.98 E-value=1.5e-08 Score=110.00 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=61.1
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCC
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGIL 564 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~ 564 (573)
..|..++.+++.+....|..|||||......+.|...|...||++..++|+.+..+|.-+...|+.+
T Consensus 424 ~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G 490 (853)
T 2fsf_A 424 AEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA 490 (853)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC
Confidence 5589999999988777889999999999999999999999999999999999888888888889866
No 68
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.82 E-value=9.8e-09 Score=107.03 Aligned_cols=52 Identities=2% Similarity=-0.064 Sum_probs=38.3
Q ss_pred CCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEE
Q psy13010 514 SGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVG 570 (573)
Q Consensus 514 ~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~ 570 (573)
.+.++|||+......+.+.+.|...|+.+..++| ++|.+++++|+++. ..|+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~-~~vL 227 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKK-PDFI 227 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CC-CSEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCC-ceEE
Confidence 4779999999999999999999999999999999 47899999999764 4444
No 69
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.76 E-value=2.7e-08 Score=108.44 Aligned_cols=53 Identities=8% Similarity=0.040 Sum_probs=46.5
Q ss_pred CCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 514 SGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 514 ~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
.+.++|||+......+.+.+.|...|+.+..++| ++|.++++.|.++. ..|++
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~-~~VLV 461 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGD-WDFVI 461 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCC-CSEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCC-ceEEE
Confidence 5789999999999999999999999999999999 48999999998764 45543
No 70
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.76 E-value=3.8e-08 Score=103.20 Aligned_cols=132 Identities=11% Similarity=0.095 Sum_probs=76.2
Q ss_pred HHhCCCCeEEeCCCCCCHHHHH-HHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceEEeecCChhHHHHHH
Q psy13010 55 LYDQGINGILADEMGLGKTVQS-IAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILR 132 (573)
Q Consensus 55 ~~~~~~~~ll~de~G~GKT~~~-ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~ 132 (573)
.+..+...++..++|+|||.+. +.++..+...+ ..+||++| ..+..|+.+.+. +..+....+.-...
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~---~~~lvl~Ptr~La~Q~~~~l~----g~~v~~~~~~~~~~---- 85 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQR---LRTAVLAPTRVVAAEMAEALR----GLPVRYQTSAVQRE---- 85 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTT---CCEEEEECSHHHHHHHHHHTT----TSCEEECC----------
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCC---CcEEEECchHHHHHHHHHHhc----CceEeEEecccccC----
Confidence 3456777899999999999984 55565554432 47899999 667888888875 22332221111100
Q ss_pred HHhhhcccccCCCCceEEEeehHhHHhhH-hhhhccCccEEEEcccccccCcchH---HHHHHHhcccCcEEEEeccCC
Q psy13010 133 QFWDMKNLHTKDASFHVVITSYQLVVSDF-KYFNRIKWQYLILDEAQAIKSSSSM---RWKLLLGFSCRNRLLLSGTPI 207 (573)
Q Consensus 133 ~~~~~~~~~~~~~~~~i~i~sy~~~~~~~-~~l~~~~~~~vIiDE~h~~kn~~s~---~~~~~~~l~~~~~~lLTgTP~ 207 (573)
......+.+++...+.... ....-..+++||+||+|.+...... .............+++||||-
T Consensus 86 ----------~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~ 154 (459)
T 2z83_A 86 ----------HQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPP 154 (459)
T ss_dssp ------------CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCT
T ss_pred ----------CCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCC
Confidence 0122335566666554322 2222246899999999986211111 111111224567899999984
No 71
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.70 E-value=1.1e-07 Score=113.64 Aligned_cols=158 Identities=15% Similarity=0.126 Sum_probs=104.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHH-HHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHC---C
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSI-AFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFV---P 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~i-a~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~---~ 114 (573)
.+.|.|.+++.-+ +..+.+.+++.++|+|||+.+. +++..+... + .+.+|+|+| ..++.|=.+++.+.+ .
T Consensus 926 ~fnpiQ~q~~~~l---~~~~~nvlv~APTGSGKTliaelail~~l~~~-~-~~kavyi~P~raLa~q~~~~~~~~f~~~~ 1000 (1724)
T 4f92_B 926 FFNPIQTQVFNTV---YNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-S-EGRCVYITPMEALAEQVYMDWYEKFQDRL 1000 (1724)
T ss_dssp BCCHHHHHHHHHH---HSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC-T-TCCEEEECSCHHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC-C-CCEEEEEcChHHHHHHHHHHHHHHhchhc
Confidence 5789999998644 4567789999999999999884 444455443 2 257999999 777777566664432 2
Q ss_pred CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhc----cCccEEEEcccccccCcchHHHHH
Q psy13010 115 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNR----IKWQYLILDEAQAIKSSSSMRWKL 190 (573)
Q Consensus 115 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~----~~~~~vIiDE~h~~kn~~s~~~~~ 190 (573)
+.+|..+.|......... ...+|+|+|++.+......+.. ....+||+||+|.+.......+..
T Consensus 1001 g~~V~~ltGd~~~~~~~~------------~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~ 1068 (1724)
T 4f92_B 1001 NKKVVLLTGETSTDLKLL------------GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEV 1068 (1724)
T ss_dssp CCCEEECCSCHHHHHHHH------------HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHH
T ss_pred CCEEEEEECCCCcchhhc------------CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHH
Confidence 577888888654322211 3458999999988554433222 256899999999997644333222
Q ss_pred H-Hhc--------ccCcEEEEeccCCCCCHHHHHH
Q psy13010 191 L-LGF--------SCRNRLLLSGTPIQNSMAELWA 216 (573)
Q Consensus 191 ~-~~l--------~~~~~~lLTgTP~~n~~~el~~ 216 (573)
+ ..+ ...+.++||||-- +..++..
T Consensus 1069 il~rl~~i~~~~~~~~riI~lSATl~--N~~dla~ 1101 (1724)
T 4f92_B 1069 ICSRMRYISSQIERPIRIVALSSSLS--NAKDVAH 1101 (1724)
T ss_dssp HHHHHHHHHHTTSSCCEEEEEESCBT--THHHHHH
T ss_pred HHHHHHHHHhhcCCCceEEEEeCCCC--CHHHHHH
Confidence 1 111 2346799999953 3555544
No 72
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.69 E-value=3.6e-07 Score=95.56 Aligned_cols=128 Identities=13% Similarity=0.124 Sum_probs=75.3
Q ss_pred CCCeEEeCCCCCCHHHH-HHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhh
Q psy13010 59 GINGILADEMGLGKTVQ-SIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWD 136 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~-~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~ 136 (573)
+...++..++|+|||.. .+.++......+ ..+||++| ..+..|+.+++. +..+. +......
T Consensus 19 ~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~---~~~lvl~Ptr~La~Q~~~~l~----g~~v~-~~~~~~~--------- 81 (451)
T 2jlq_A 19 KRLTIMDLHPGAGKTKRILPSIVREALLRR---LRTLILAPTRVVAAEMEEALR----GLPIR-YQTPAVK--------- 81 (451)
T ss_dssp TCEEEECCCTTSSCCTTHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHTT----TSCEE-ECCTTCS---------
T ss_pred CCeEEEECCCCCCHhhHHHHHHHHHHHhcC---CcEEEECCCHHHHHHHHHHhc----Cceee-eeecccc---------
Confidence 33348888999999996 455555444432 47899999 667778888774 33332 2111100
Q ss_pred hcccccCCCCceEEEeehHhHHhhHhh-hhccCccEEEEcccccccCcchHHHHHHH-h---cccCcEEEEeccCCC
Q psy13010 137 MKNLHTKDASFHVVITSYQLVVSDFKY-FNRIKWQYLILDEAQAIKSSSSMRWKLLL-G---FSCRNRLLLSGTPIQ 208 (573)
Q Consensus 137 ~~~~~~~~~~~~i~i~sy~~~~~~~~~-l~~~~~~~vIiDE~h~~kn~~s~~~~~~~-~---l~~~~~~lLTgTP~~ 208 (573)
........+.+++...+...... ..-.++++||+||+|++ +..+....... . ......+++||||-.
T Consensus 82 ----~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 153 (451)
T 2jlq_A 82 ----SDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPG 153 (451)
T ss_dssp ----CCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTT
T ss_pred ----ccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCc
Confidence 01123445777888776543322 22236799999999987 33222211111 1 124578999999844
No 73
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.69 E-value=2.9e-07 Score=102.27 Aligned_cols=149 Identities=15% Similarity=0.111 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceEEee
Q psy13010 43 HYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKVVPY 121 (573)
Q Consensus 43 ~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v~~~ 121 (573)
+.|..++. ..+..+...++..++|+|||.++-.++.......+..+.++|++| ..+..|+.+.+...+. ..+...
T Consensus 96 ~~q~~~i~---~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~-~~v~~~ 171 (773)
T 2xau_A 96 HAQRDEFL---KLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMD-VKLGEE 171 (773)
T ss_dssp GGGHHHHH---HHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTT-CCBTTT
T ss_pred HHHHHHHH---HHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhC-Cchhhe
Confidence 35555553 233445667899999999999543333322211111135899999 4555677777766542 222111
Q ss_pred cCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhH-hhhhccCccEEEEccccc-ccCcch--HHHHHHHhc-cc
Q psy13010 122 WGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF-KYFNRIKWQYLILDEAQA-IKSSSS--MRWKLLLGF-SC 196 (573)
Q Consensus 122 ~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~-~~l~~~~~~~vIiDE~h~-~kn~~s--~~~~~~~~l-~~ 196 (573)
.|.... .. .......+|+++|...+.+.. ....-.++++||+||+|. .-+... ...+.+... ..
T Consensus 172 vG~~i~---------~~--~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~ 240 (773)
T 2xau_A 172 VGYSIR---------FE--NKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPD 240 (773)
T ss_dssp EEEEET---------TE--EECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred ecceec---------cc--cccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCC
Confidence 111000 00 011245679999998876543 222334789999999995 322221 122222222 24
Q ss_pred CcEEEEeccC
Q psy13010 197 RNRLLLSGTP 206 (573)
Q Consensus 197 ~~~~lLTgTP 206 (573)
...+++|||+
T Consensus 241 ~~iIl~SAT~ 250 (773)
T 2xau_A 241 LKIIIMSATL 250 (773)
T ss_dssp CEEEEEESCS
T ss_pred ceEEEEeccc
Confidence 5689999998
No 74
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.68 E-value=1.4e-07 Score=102.20 Aligned_cols=133 Identities=13% Similarity=0.158 Sum_probs=81.1
Q ss_pred HHHhCCCCeEEeCCCCCCHHHHH-HHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceEEeecCChhHHHHH
Q psy13010 54 NLYDQGINGILADEMGLGKTVQS-IAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKVVPYWGSPQERKIL 131 (573)
Q Consensus 54 ~~~~~~~~~ll~de~G~GKT~~~-ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~ 131 (573)
..+..+...++..++|+|||... +.++..+...+ ..+||++| ..|..|+.+++. +..+. |.+..-.
T Consensus 181 ~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~---~~vLvl~PtreLa~Qi~~~l~----~~~v~-~~~~~l~---- 248 (618)
T 2whx_A 181 DIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRR---LRTLILAPTRVVAAEMEEALR----GLPIR-YQTPAVK---- 248 (618)
T ss_dssp GGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHTT----TSCEE-ECCTTSS----
T ss_pred HHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCC---CeEEEEcChHHHHHHHHHHhc----CCcee-Eecccce----
Confidence 34556788899999999999984 56666655431 47899999 667778887775 22332 3322100
Q ss_pred HHHhhhcccccCCCCceEEEeehHhHHhhH-hhhhccCccEEEEcccccccCcch--HHHHHHHhc--ccCcEEEEeccC
Q psy13010 132 RQFWDMKNLHTKDASFHVVITSYQLVVSDF-KYFNRIKWQYLILDEAQAIKSSSS--MRWKLLLGF--SCRNRLLLSGTP 206 (573)
Q Consensus 132 ~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~-~~l~~~~~~~vIiDE~h~~kn~~s--~~~~~~~~l--~~~~~~lLTgTP 206 (573)
........+.+++...+.... ....-.++++||+||+|++ +... ........+ .....+++||||
T Consensus 249 ---------~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~ 318 (618)
T 2whx_A 249 ---------SDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATP 318 (618)
T ss_dssp ---------CCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSC
T ss_pred ---------eccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCC
Confidence 011233446667777665422 1222346899999999998 3221 122222222 345689999998
Q ss_pred CC
Q psy13010 207 IQ 208 (573)
Q Consensus 207 ~~ 208 (573)
-.
T Consensus 319 ~~ 320 (618)
T 2whx_A 319 PG 320 (618)
T ss_dssp TT
T ss_pred ch
Confidence 54
No 75
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.66 E-value=1.9e-07 Score=88.59 Aligned_cols=151 Identities=11% Similarity=0.079 Sum_probs=89.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHH-HhhhcC-CCCCEEEEcCc-ccHHHHHHHHHHHCCC-
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCH-IAETYD-VWGPFLIISPA-STLHNWQQEMERFVPD- 115 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~-~~~~~~-~~~~~LIV~P~-~l~~qW~~el~~~~~~- 115 (573)
.++++|.+++..+.. +...++..++|+|||......+.. ....+. ....+++++|. .+..|..+.+...+..
T Consensus 61 p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 578999999876543 677789999999999765444433 332211 12267888894 4455677777665532
Q ss_pred --ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccc-cCcchH--HHHH
Q psy13010 116 --FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI-KSSSSM--RWKL 190 (573)
Q Consensus 116 --~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~-kn~~s~--~~~~ 190 (573)
..+. +.-. ..........+|+++|...+.+.... .-.+.++||+||+|.. -+.+.. ..+.
T Consensus 137 ~~~~~g-~~~~-------------~~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~ 201 (235)
T 3llm_A 137 PGKSCG-YSVR-------------FESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRD 201 (235)
T ss_dssp TTSSEE-EEET-------------TEEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHH
T ss_pred cCceEE-Eeec-------------hhhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHH
Confidence 1111 1000 00011124578999999887665433 1346799999999984 221111 1222
Q ss_pred HHh-cccCcEEEEeccCCCC
Q psy13010 191 LLG-FSCRNRLLLSGTPIQN 209 (573)
Q Consensus 191 ~~~-l~~~~~~lLTgTP~~n 209 (573)
+.. ......+++|||+-..
T Consensus 202 i~~~~~~~~~il~SAT~~~~ 221 (235)
T 3llm_A 202 VVQAYPEVRIVLMSATIDTS 221 (235)
T ss_dssp HHHHCTTSEEEEEECSSCCH
T ss_pred HHhhCCCCeEEEEecCCCHH
Confidence 222 2345689999997654
No 76
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.63 E-value=1e-07 Score=102.24 Aligned_cols=137 Identities=14% Similarity=0.183 Sum_probs=90.5
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCC--Cc
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVP--DF 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~--~~ 116 (573)
.++|+|++.+..+.+.+..+..+++-..+|+|||+..+.-+.. . ..+++|++| ..+..||.+++.+... +.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~--~----~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE--V----KPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH--H----CSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh--C----CCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 5899999999888788888888899999999999876543333 2 258999999 7778899999987632 46
Q ss_pred eEEeecCChhH--------------------------------H-HHHHHHhhh---cc------cccCCCCceEEEeeh
Q psy13010 117 KVVPYWGSPQE--------------------------------R-KILRQFWDM---KN------LHTKDASFHVVITSY 154 (573)
Q Consensus 117 ~v~~~~g~~~~--------------------------------~-~~~~~~~~~---~~------~~~~~~~~~i~i~sy 154 (573)
++.++.|...- . ..+...... .. ........+|+|++|
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 66666553210 0 000000000 00 001113569999999
Q ss_pred HhHHhhHh--hhh-ccCccEEEEcccccccC
Q psy13010 155 QLVVSDFK--YFN-RIKWQYLILDEAQAIKS 182 (573)
Q Consensus 155 ~~~~~~~~--~l~-~~~~~~vIiDE~h~~kn 182 (573)
..+..... .+. .....+||+||||++-+
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99976531 111 13567899999999866
No 77
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.56 E-value=1.9e-07 Score=99.83 Aligned_cols=134 Identities=19% Similarity=0.215 Sum_probs=82.9
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKV 118 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v 118 (573)
.++|+|++.+..+...+..+..+++-..+|+|||+..+..+ +.. .++++|++| ..+..||.+++.+. +.++
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~--~~~----~~~~~~~~~t~~l~~q~~~~~~~l--~~~~ 78 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLG--MQL----KKKVLIFTRTHSQLDSIYKNAKLL--GLKT 78 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHH--HHH----TCEEEEEESCHHHHHHHHHHHGGG--TCCE
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHH--HhC----CCcEEEEcCCHHHHHHHHHHHHhc--CCcE
Confidence 68999999998777777778888999999999997654333 222 258999999 77788999999774 3445
Q ss_pred EeecCChh---------HHHH-------HHH------------Hhhh----------cccccCCCCceEEEeehHhHHhh
Q psy13010 119 VPYWGSPQ---------ERKI-------LRQ------------FWDM----------KNLHTKDASFHVVITSYQLVVSD 160 (573)
Q Consensus 119 ~~~~g~~~---------~~~~-------~~~------------~~~~----------~~~~~~~~~~~i~i~sy~~~~~~ 160 (573)
.+..|... .... +.. .|.. ..........+|+|++|..+...
T Consensus 79 ~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~ 158 (540)
T 2vl7_A 79 GFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQK 158 (540)
T ss_dssp EEC---------------------------------------------------------CTTGGGCSEEEEETHHHHSH
T ss_pred EEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCH
Confidence 44444321 0000 000 0000 00011124569999999999764
Q ss_pred Hh--hhh-------ccCccEEEEccccccc
Q psy13010 161 FK--YFN-------RIKWQYLILDEAQAIK 181 (573)
Q Consensus 161 ~~--~l~-------~~~~~~vIiDE~h~~k 181 (573)
.. .+. .....+|||||||++-
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 159 PIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 32 221 2356799999999993
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.54 E-value=9.5e-06 Score=88.63 Aligned_cols=71 Identities=18% Similarity=0.136 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 500 KLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 500 Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
++..+...|..+...+.++|||+........|.+.|...|+.+..++|+++..+|.+++++|+++. +.|++
T Consensus 430 ~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~-~~VLV 500 (661)
T 2d7d_A 430 QIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGK-YDVLV 500 (661)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTS-CSEEE
T ss_pred hHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCC-eEEEE
Confidence 556666667777777899999999999999999999999999999999999999999999998653 34443
No 79
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.47 E-value=7.4e-07 Score=106.57 Aligned_cols=160 Identities=16% Similarity=0.086 Sum_probs=103.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHH-HHHHHHhhhcC-------CCCCEEEEcC-cccHHHHHHHHH
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSI-AFLCHIAETYD-------VWGPFLIISP-ASTLHNWQQEME 110 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~i-a~~~~~~~~~~-------~~~~~LIV~P-~~l~~qW~~el~ 110 (573)
.|.+.|..++.. .+..+.+.+++.++|+|||+.|. +++..+..... ..+++|+|+| +.|..|=.+++.
T Consensus 79 ~ln~iQs~~~~~---al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 79 TLNRIQSKLYRA---ALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp BCCHHHHHTHHH---HHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH---HHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 688999998863 35677889999999999999884 45555543211 2346899999 888888777776
Q ss_pred HHCC--CceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhh----ccCccEEEEcccccccCcc
Q psy13010 111 RFVP--DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFN----RIKWQYLILDEAQAIKSSS 184 (573)
Q Consensus 111 ~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~----~~~~~~vIiDE~h~~kn~~ 184 (573)
+.+. +.+|..+.|...... ......+|+|+|++.+........ -...++||+||+|.+.+..
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~------------~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~R 223 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCK------------EEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDR 223 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCC------------TTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTT
T ss_pred HHHhhCCCEEEEEECCCCCCc------------cccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCcc
Confidence 5543 467877877532111 112467899999998754322111 1256899999999997633
Q ss_pred hHHHH-----HHH---hc-ccCcEEEEeccCCCCCHHHHHH
Q psy13010 185 SMRWK-----LLL---GF-SCRNRLLLSGTPIQNSMAELWA 216 (573)
Q Consensus 185 s~~~~-----~~~---~l-~~~~~~lLTgTP~~n~~~el~~ 216 (573)
..... .++ .. ....+++||||-- ++.|+..
T Consensus 224 G~~lE~~l~rl~~~~~~~~~~~riI~LSATl~--N~~dvA~ 262 (1724)
T 4f92_B 224 GPVLEALVARAIRNIEMTQEDVRLIGLSATLP--NYEDVAT 262 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCEEEEEECSCT--THHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEecccC--CHHHHHH
Confidence 22221 111 11 2346899999942 3566543
No 80
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.46 E-value=6.8e-06 Score=87.86 Aligned_cols=68 Identities=13% Similarity=0.078 Sum_probs=57.6
Q ss_pred ccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCC
Q psy13010 497 DAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGIL 564 (573)
Q Consensus 497 ~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~ 564 (573)
...|..++.+.|.+....|.+|||||......+.|...|...|++...++|+.+..+|.-+...|+..
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g 523 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG 523 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC
Confidence 34588999999988777789999999999999999999999999999999997666665555666544
No 81
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.39 E-value=1.6e-05 Score=86.91 Aligned_cols=72 Identities=18% Similarity=0.156 Sum_probs=62.3
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 499 GKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 499 ~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
+++..+.+.|..+.+.+.++|||+........|.+.|...|+.+..++|+++..+|.+++++|.++. +.|++
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~-~~VLv 494 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGH-YDCLV 494 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTS-CSEEE
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCC-ceEEE
Confidence 4666777777777778899999999999999999999999999999999999999999999998654 44443
No 82
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.27 E-value=5.7e-06 Score=89.98 Aligned_cols=53 Identities=8% Similarity=-0.135 Sum_probs=46.1
Q ss_pred EEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCC-CCceEEE
Q psy13010 519 LVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGIL-THQSVGL 571 (573)
Q Consensus 519 lIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~-~~~~v~L 571 (573)
+||+......+.+.+.|...|+.+..++|+++.++|.++++.|++. ...+|++
T Consensus 324 iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLV 377 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILV 377 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEE
T ss_pred EEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEE
Confidence 6778778899999999999999999999999999999999999982 3355554
No 83
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.20 E-value=3.6e-06 Score=90.67 Aligned_cols=128 Identities=16% Similarity=0.088 Sum_probs=80.6
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHh
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~ 135 (573)
..+...++..++|+|||.++...+. .. ...+||++| ..+..|+.+.+.+.+. ..+....|...
T Consensus 230 ~~~~~vlv~ApTGSGKT~a~~l~ll---~~---g~~vLVl~PTReLA~Qia~~l~~~~g-~~vg~~vG~~~--------- 293 (666)
T 3o8b_A 230 QSFQVAHLHAPTGSGKSTKVPAAYA---AQ---GYKVLVLNPSVAATLGFGAYMSKAHG-IDPNIRTGVRT--------- 293 (666)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHH---HT---TCCEEEEESCHHHHHHHHHHHHHHHS-CCCEEECSSCE---------
T ss_pred HcCCeEEEEeCCchhHHHHHHHHHH---HC---CCeEEEEcchHHHHHHHHHHHHHHhC-CCeeEEECcEe---------
Confidence 3455678899999999976554332 22 137999999 5677789888876653 33333334321
Q ss_pred hhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcch-HHHHHHHhcccC---cEEEEeccCCC
Q psy13010 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSS-MRWKLLLGFSCR---NRLLLSGTPIQ 208 (573)
Q Consensus 136 ~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s-~~~~~~~~l~~~---~~~lLTgTP~~ 208 (573)
.....+|++.|+..+... ..+...++++||+||+|.+..... .....+..+... ..+++||||-.
T Consensus 294 -------~~~~~~IlV~TPGrLl~~-~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~ 362 (666)
T 3o8b_A 294 -------ITTGAPVTYSTYGKFLAD-GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 362 (666)
T ss_dssp -------ECCCCSEEEEEHHHHHHT-TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred -------ccCCCCEEEECcHHHHhC-CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCc
Confidence 125678999999998433 334445789999999987632211 122223333322 25778999876
No 84
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.07 E-value=1e-05 Score=87.60 Aligned_cols=82 Identities=16% Similarity=0.269 Sum_probs=60.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHC--CCc
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFV--PDF 116 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~--~~~ 116 (573)
.++|.|++.+..+...+..+..+++...+|+|||+..+.-+.......+ .+++|++| ..+..|+.+++.+.. .++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~--~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK--LKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC--CeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 4689999999888888888888999999999999887543333222212 48899999 667778999987753 256
Q ss_pred eEEeecC
Q psy13010 117 KVVPYWG 123 (573)
Q Consensus 117 ~v~~~~g 123 (573)
++.++.|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 6666555
No 85
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.04 E-value=3.6e-05 Score=83.94 Aligned_cols=146 Identities=19% Similarity=0.203 Sum_probs=91.4
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCccc-HH---HHHHHHHHHCCC
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAST-LH---NWQQEMERFVPD 115 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l-~~---qW~~el~~~~~~ 115 (573)
.++|-|..++-.+ ..|. |....+|.|||+++...+...... + ..++||+|..- .. +|...+.+++ +
T Consensus 79 ~Pt~VQ~~~ip~L----lqG~--IaeakTGeGKTLvf~Lp~~L~aL~-G--~qv~VvTPTreLA~Qdae~m~~l~~~l-G 148 (997)
T 2ipc_A 79 RHFDVQLIGGAVL----HEGK--IAEMKTGEGKTLVATLAVALNALT-G--KGVHVVTVNDYLARRDAEWMGPVYRGL-G 148 (997)
T ss_dssp CCCHHHHHHHHHH----HTTS--EEECCSTHHHHHHHHHHHHHHHTT-C--SCCEEEESSHHHHHHHHHHHHHHHHTT-T
T ss_pred CCcHHHHhhcccc----cCCc--eeeccCCCchHHHHHHHHHHHHHh-C--CCEEEEeCCHHHHHHHHHHHHHHHHhc-C
Confidence 5688899987543 2243 778899999999764333222222 2 36899999544 33 4888888876 6
Q ss_pred ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhh-H--------hhhhcc---CccEEEEcccccccCc
Q psy13010 116 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD-F--------KYFNRI---KWQYLILDEAQAIKSS 183 (573)
Q Consensus 116 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~-~--------~~l~~~---~~~~vIiDE~h~~kn~ 183 (573)
+++.++.|+......... ...+|++.|...+..+ . ..+... +..++|+||+|.+-..
T Consensus 149 Lsv~~i~Gg~~~~~r~~a-----------y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiD 217 (997)
T 2ipc_A 149 LSVGVIQHASTPAERRKA-----------YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILID 217 (997)
T ss_dssp CCEEECCTTCCHHHHHHH-----------HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTS
T ss_pred CeEEEEeCCCCHHHHHHH-----------cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHh
Confidence 777666664332211111 2468999999888421 1 122233 6789999999965321
Q ss_pred chHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHH
Q psy13010 184 SSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLH 219 (573)
Q Consensus 184 ~s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~ 219 (573)
.+...+++|| |.+.. ..+|..++
T Consensus 218 -----------eartPLIISg-p~~~~-~~lY~~~~ 240 (997)
T 2ipc_A 218 -----------EARTPLIISG-PAEKA-TDLYYKMA 240 (997)
T ss_dssp -----------STTSCEEEEE-SCSSC-HHHHHHHH
T ss_pred -----------CCCCCeeeeC-CCccc-hHHHHHHH
Confidence 2334589999 87766 55555443
No 86
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=98.00 E-value=1.4e-05 Score=70.86 Aligned_cols=73 Identities=14% Similarity=0.167 Sum_probs=64.5
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 496 ~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
..+.|+..|.+++... .+.|+|||+++....+.+.+.|...|+.+..++|+++.++|..++++|+++. ..|++
T Consensus 18 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~-~~vlv 90 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE-YRYLV 90 (163)
T ss_dssp CGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS-CSEEE
T ss_pred ChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC-CeEEE
Confidence 3567999999999863 5779999999999999999999999999999999999999999999999764 45543
No 87
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=97.98 E-value=1.4e-05 Score=71.51 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=64.2
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 496 ~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
..+.|+..|.++++.. .+.|+|||+++....+.+.+.|...|+.+..++|+++.++|.++++.|+++. ..|++
T Consensus 14 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~-~~vLv 86 (172)
T 1t5i_A 14 KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ-RRILV 86 (172)
T ss_dssp CGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS-CSEEE
T ss_pred ChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC-CcEEE
Confidence 3467999999999864 5779999999999999999999999999999999999999999999999764 44543
No 88
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.88 E-value=1.1e-05 Score=73.08 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=56.6
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 496 ~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
..+.|+.+|.++++.. ..+.|+|||+++...++.+.+.|...|+.+..++|+++.++|.+++++|+++. .+|++
T Consensus 28 ~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~-~~vLv 101 (185)
T 2jgn_A 28 EESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK-SPILV 101 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS-SSEEE
T ss_pred CcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC-CeEEE
Confidence 4577999999999874 35789999999999999999999999999999999999999999999998654 44443
No 89
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=97.83 E-value=2.6e-05 Score=70.03 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=61.5
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 499 GKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 499 ~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
.|+.+|.++++.. .+.|+|||+++...++.+...|...|+.+..++|+++.++|..+++.|+++. .+|++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~-~~vLv 89 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK-EKVLI 89 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS-CSEEE
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC-CeEEE
Confidence 3888888888753 4679999999999999999999999999999999999999999999999764 45543
No 90
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.82 E-value=2e-05 Score=71.79 Aligned_cols=72 Identities=15% Similarity=0.269 Sum_probs=62.1
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 496 ~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
..+.|+..|.+++.. .+.|+|||+++...++.+.+.|...|+.+..++|+++.++|.+++++|+++. ..|++
T Consensus 38 ~~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~-~~vLv 109 (191)
T 2p6n_A 38 KEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK-KDVLV 109 (191)
T ss_dssp CGGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS-CSEEE
T ss_pred ChHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC-CEEEE
Confidence 346788888887764 4679999999999999999999999999999999999999999999999664 45543
No 91
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=97.78 E-value=6.4e-05 Score=66.69 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=62.0
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 500 KLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 500 Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
|+.+|.++++.. .+.|+|||++....++.+...|...|+.+..++|+++.++|..+++.|+++. .+|++
T Consensus 17 K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~vlv 85 (165)
T 1fuk_A 17 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS-SRILI 85 (165)
T ss_dssp HHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS-CSEEE
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC-CEEEE
Confidence 999999999874 5789999999999999999999999999999999999999999999998765 34443
No 92
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.77 E-value=0.00021 Score=78.04 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=54.0
Q ss_pred chhhhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCccc-HHHHHHHHHHH
Q psy13010 35 GLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAST-LHNWQQEMERF 112 (573)
Q Consensus 35 ~~l~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l-~~qW~~el~~~ 112 (573)
..+...|-+.|++||..++. ...-.||.-.+|+|||.+++.++..+...+ .++||++|.+. +.+-.+.+...
T Consensus 184 ~~~~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~---~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 184 TFFNTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQG---LKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp CCSSTTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEcCchHHHHHHHHHHHhc
Confidence 33456899999999986543 334568888999999999999998887753 48999999554 44556666554
No 93
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=97.71 E-value=5.9e-05 Score=69.98 Aligned_cols=73 Identities=22% Similarity=0.196 Sum_probs=64.4
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 496 ~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
..+.|+.+|.+++.. ..+.++|||+......+.+.+.|...|+.+..++|+++.++|.++++.|+++. .+|++
T Consensus 14 ~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~-~~vlv 86 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGE-VRVLV 86 (212)
T ss_dssp CTTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSS-CCEEE
T ss_pred CHHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCC-CeEEE
Confidence 347799999999975 35789999999999999999999999999999999999999999999998764 45543
No 94
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=96.54 E-value=2.1e-05 Score=70.20 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=60.3
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCC
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILT 565 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~ 565 (573)
+.|+.+|.++++. .++.|+|||+++....+.+.+.|...|+.+..++|+++.++|.+++++|+++.
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 5689999888876 34679999999999999999999999999999999999999999999999764
No 95
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.34 E-value=0.0019 Score=70.01 Aligned_cols=156 Identities=18% Similarity=0.271 Sum_probs=91.5
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHH-HHHHHHHHHCCCce
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLH-NWQQEMERFVPDFK 117 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~-qW~~el~~~~~~~~ 117 (573)
..|-+.|.+++..++. ....+|.-.+|+|||.++..++..+.... ..++||++|.+..- +-.+.+.+. +.+
T Consensus 179 ~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~~~--~~~ilv~a~tn~A~~~l~~~l~~~--~~~ 250 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQG--NGPVLVCAPSNIAVDQLTEKIHQT--GLK 250 (624)
T ss_dssp CCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHTSS--SCCEEEEESSHHHHHHHHHHHHTT--TCC
T ss_pred CCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCcHHHHHHHHHHHHhc--CCe
Confidence 3689999999976542 44568888999999999988888776532 25899999966554 444555443 233
Q ss_pred EEeecCChhH-----------HH---------HHHHHhhhcc--------------------cccCCCCceEEEeehHhH
Q psy13010 118 VVPYWGSPQE-----------RK---------ILRQFWDMKN--------------------LHTKDASFHVVITSYQLV 157 (573)
Q Consensus 118 v~~~~g~~~~-----------~~---------~~~~~~~~~~--------------------~~~~~~~~~i~i~sy~~~ 157 (573)
++-+...... .. .+.......+ ...-....+|+++|...+
T Consensus 251 ~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~ 330 (624)
T 2gk6_A 251 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 330 (624)
T ss_dssp EEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGG
T ss_pred EEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhh
Confidence 3322221100 00 0000000000 000013456788777655
Q ss_pred HhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCCC
Q psy13010 158 VSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208 (573)
Q Consensus 158 ~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~ 208 (573)
.. ..+....|++||+||+.....+. ..+..+....+++|-|=|.+
T Consensus 331 ~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~Q 375 (624)
T 2gk6_A 331 GD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQ 375 (624)
T ss_dssp GC--GGGTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred cc--hhhhcCCCCEEEEecccccCcHH----HHHHHHhcCCeEEEecChhc
Confidence 43 33556789999999997765442 11222234567888888877
No 96
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=97.26 E-value=0.00045 Score=67.50 Aligned_cols=73 Identities=21% Similarity=0.181 Sum_probs=64.2
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 496 ~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
..+.|+.+|.++++.. .+.++|||+......+.+.+.|...|+.+..++|+++.++|..+++.|+++. .+|++
T Consensus 11 ~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~-~~vLV 83 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE-VRVLV 83 (300)
T ss_dssp CSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTS-CCEEE
T ss_pred CHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC-ceEEE
Confidence 3467999999999764 3789999999999999999999999999999999999999999999998764 44543
No 97
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.24 E-value=0.0034 Score=69.72 Aligned_cols=156 Identities=18% Similarity=0.272 Sum_probs=91.6
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHH-HHHHHHHHCCCce
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHN-WQQEMERFVPDFK 117 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~q-W~~el~~~~~~~~ 117 (573)
..|-+.|.+++..++. +...+|.-.+|+|||.++..++..+.... ..++||++|.+..-. -.+.+... +.+
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~~--~~~ilv~a~tn~A~~~l~~~l~~~--g~~ 426 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQG--NGPVLVCAPSNIAVDQLTEKIHQT--GLK 426 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTTC--SSCEEEEESSHHHHHHHHHHHHTT--TCC
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHcC--CCcEEEEcCcHHHHHHHHHHHHHh--Ccc
Confidence 3689999999976532 44568888999999999988888777532 258999999665543 44444432 233
Q ss_pred EEeecCChhH-----------HH---------HHHHHhhhcccc--------------------cCCCCceEEEeehHhH
Q psy13010 118 VVPYWGSPQE-----------RK---------ILRQFWDMKNLH--------------------TKDASFHVVITSYQLV 157 (573)
Q Consensus 118 v~~~~g~~~~-----------~~---------~~~~~~~~~~~~--------------------~~~~~~~i~i~sy~~~ 157 (573)
++-+...... .. .++.+....+.. .-....+|+++|...+
T Consensus 427 vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~ 506 (800)
T 2wjy_A 427 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 506 (800)
T ss_dssp EEECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGG
T ss_pred eEeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhh
Confidence 3322211100 00 000000000000 0012346777777665
Q ss_pred HhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCCC
Q psy13010 158 VSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208 (573)
Q Consensus 158 ~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~ 208 (573)
.. ..+....|++|||||+.....+. ..+..+....+++|-|=|.+
T Consensus 507 ~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~Q 551 (800)
T 2wjy_A 507 GD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQ 551 (800)
T ss_dssp GC--TTTTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred CC--hhhhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEeccccc
Confidence 43 23556789999999997765432 12333344568888888776
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.15 E-value=0.0013 Score=70.32 Aligned_cols=132 Identities=19% Similarity=0.148 Sum_probs=82.3
Q ss_pred hhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCce
Q psy13010 38 RGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFK 117 (573)
Q Consensus 38 ~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~ 117 (573)
...|.+.|++++..+. .+...+|.-.+|+|||.++.+++..+...+ .++++++|....-....+... ..
T Consensus 187 ~~~L~~~Q~~Av~~~~----~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g---~~Vl~~ApT~~Aa~~L~e~~~----~~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLA----GHRLVVLTGGPGTGKSTTTKAVADLAESLG---LEVGLCAPTGKAARRLGEVTG----RT 255 (574)
T ss_dssp TTTCCHHHHHHHHHHT----TCSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHHT----SC
T ss_pred cCCCCHHHHHHHHHHH----hCCEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEecCcHHHHHHhHhhhc----cc
Confidence 4578999999997653 355668889999999999888887776643 488999997766655444211 00
Q ss_pred EEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcccC
Q psy13010 118 VVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCR 197 (573)
Q Consensus 118 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~ 197 (573)
.. .....+. . . . +.+.. ..-....+++||+||++.+... .....+..+...
T Consensus 256 a~------Tih~ll~----~-~-----~---------~~~~~--~~~~~~~~dvlIIDEasml~~~--~~~~Ll~~~~~~ 306 (574)
T 3e1s_A 256 AS------TVHRLLG----Y-G-----P---------QGFRH--NHLEPAPYDLLIVDEVSMMGDA--LMLSLLAAVPPG 306 (574)
T ss_dssp EE------EHHHHTT----E-E-----T---------TEESC--SSSSCCSCSEEEECCGGGCCHH--HHHHHHTTSCTT
T ss_pred HH------HHHHHHc----C-C-----c---------chhhh--hhcccccCCEEEEcCccCCCHH--HHHHHHHhCcCC
Confidence 10 0000000 0 0 0 00000 0112236899999999988543 233445555667
Q ss_pred cEEEEeccCCCC
Q psy13010 198 NRLLLSGTPIQN 209 (573)
Q Consensus 198 ~~~lLTgTP~~n 209 (573)
.++++.|-|.+.
T Consensus 307 ~~lilvGD~~QL 318 (574)
T 3e1s_A 307 ARVLLVGDTDQL 318 (574)
T ss_dssp CEEEEEECTTSC
T ss_pred CEEEEEeccccc
Confidence 899999998873
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.0028 Score=70.44 Aligned_cols=155 Identities=18% Similarity=0.230 Sum_probs=91.3
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHH-HHHHHHHHHCCCce
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLH-NWQQEMERFVPDFK 117 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~-qW~~el~~~~~~~~ 117 (573)
..|-+.|.+|+..++. +...+|.-.+|+|||.++..++..+....+ .++||++|.+..- +-.+.+.+. +.+
T Consensus 359 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~~~--~~ILv~a~tn~A~d~l~~rL~~~--g~~ 430 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKIHK--DRILVCAPSNVAVDHLAAKLRDL--GLK 430 (802)
T ss_dssp CCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSHHHHHHHHHHHHHT--TCC
T ss_pred ccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhCCC--CeEEEEcCcHHHHHHHHHHHHhh--Ccc
Confidence 3689999999975532 444688889999999999888887765322 5899999966554 455556554 233
Q ss_pred EEeecCChh----------------------HHHHHH---------------HHhhhc--ccccCCCCceEEEeehHhHH
Q psy13010 118 VVPYWGSPQ----------------------ERKILR---------------QFWDMK--NLHTKDASFHVVITSYQLVV 158 (573)
Q Consensus 118 v~~~~g~~~----------------------~~~~~~---------------~~~~~~--~~~~~~~~~~i~i~sy~~~~ 158 (573)
++-+..... ....+. .+.... .........+|+++|...+.
T Consensus 431 ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~ 510 (802)
T 2xzl_A 431 VVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAG 510 (802)
T ss_dssp EEECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGG
T ss_pred EEeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcC
Confidence 332221100 000000 000000 00001134578888776654
Q ss_pred hhHhhhhccCccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCCC
Q psy13010 159 SDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208 (573)
Q Consensus 159 ~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~ 208 (573)
. ..+.. .|++||+||++.+..+. ..+..+....+++|-|=|.+
T Consensus 511 ~--~~L~~-~fd~viIDEA~q~~e~~----~li~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 511 D--KRLDT-KFRTVLIDESTQASEPE----CLIPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp C--TTCCS-CCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred h--HHHhc-cCCEEEEECccccchHH----HHHHHHhCCCEEEEEeCccc
Confidence 2 23444 89999999998775432 12233344568888888876
No 100
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.09 E-value=0.0035 Score=65.31 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=50.1
Q ss_pred hccHHHHHHHHHHHHHHHhCCC-CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHH
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGI-NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLH 103 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~-~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~ 103 (573)
..|-+-|.+++..+...+..+. ..+|.-..|+|||.++.+++..+...+. ..+++++|.+..-
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~a~T~~Aa 87 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE--TGIILAAPTHAAK 87 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEecCcHHHH
Confidence 4699999999998877665544 5688899999999999888888877643 4789999976543
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.05 E-value=0.06 Score=58.53 Aligned_cols=70 Identities=10% Similarity=0.106 Sum_probs=50.5
Q ss_pred hhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcC-CCCCEEEEcCcc-cHHHHHHHHHHHC
Q psy13010 38 RGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYD-VWGPFLIISPAS-TLHNWQQEMERFV 113 (573)
Q Consensus 38 ~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~-~~~~~LIV~P~~-l~~qW~~el~~~~ 113 (573)
-..|.+.|+++|. ...+..+|.-..|+|||.+++.-+..+....+ ....+|+|++.. ...+.++.+.+..
T Consensus 7 ~~~Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 7 LDSLNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp HTTCCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 3579999999985 23455677779999999999988888776532 345799999854 4445666666553
No 102
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.83 E-value=0.00037 Score=49.17 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=37.5
Q ss_pred ccccCCCCCCCCCCCCCcccCCCCCCCCcccccccccCCchhhhhhhh
Q psy13010 373 REEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIK 420 (573)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~~~~~~~~~~~~ 420 (573)
+.++..|++|.+...+|++++|+|.||..|+.. ....+|.+|....
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~--~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA--SGMQCPICQAPWP 48 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS--SSSSCSSCCSSSS
T ss_pred cccCCCceEeCCccCCeEEcCCCCcccHHHHcc--CCCCCCcCCcEee
Confidence 345678999999999999999999999999877 4556777766544
No 103
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.82 E-value=0.0049 Score=66.51 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhc-CCCCCEEEEcCcccHHH-HHHHHHHHCCCceE-
Q psy13010 42 KHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY-DVWGPFLIISPASTLHN-WQQEMERFVPDFKV- 118 (573)
Q Consensus 42 ~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~-~~~~~~LIV~P~~l~~q-W~~el~~~~~~~~v- 118 (573)
.+.|+.++..+. .+...++.-.+|+|||.++..++..+.... ....++++++|....-. -.+.+........+
T Consensus 151 ~~~Q~~Ai~~~l----~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHH----TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 467999986543 356678999999999988877777766431 11237899999655443 33333332100000
Q ss_pred -EeecCChhHHHHHHHHhhhcccccCCCCceEEEeehH--hHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcc
Q psy13010 119 -VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQ--LVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFS 195 (573)
Q Consensus 119 -~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~--~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~ 195 (573)
....+.......+ ..++-.... .+.. ..-....+++||+||++.+.. ......+..+.
T Consensus 227 ~~~~~~~~~~~~Ti---------------h~ll~~~~~~~~~~~--~~~~~l~~d~lIIDEAsml~~--~~~~~Ll~~l~ 287 (608)
T 1w36_D 227 DEQKKRIPEDASTL---------------HRLLGAQPGSQRLRH--HAGNPLHLDVLVVDEASMIDL--PMMSRLIDALP 287 (608)
T ss_dssp SCCCCSCSCCCBTT---------------TSCC-------------CTTSCCSCSEEEECSGGGCBH--HHHHHHHHTCC
T ss_pred HHHHhccchhhhhh---------------HhhhccCCCchHHHh--ccCCCCCCCEEEEechhhCCH--HHHHHHHHhCC
Confidence 0000000000000 000000000 0111 111123789999999997642 23445566667
Q ss_pred cCcEEEEeccCCCCC
Q psy13010 196 CRNRLLLSGTPIQNS 210 (573)
Q Consensus 196 ~~~~~lLTgTP~~n~ 210 (573)
...+++|.|=|.+-.
T Consensus 288 ~~~~liLvGD~~QL~ 302 (608)
T 1w36_D 288 DHARVIFLGDRDQLA 302 (608)
T ss_dssp TTCEEEEEECTTSGG
T ss_pred CCCEEEEEcchhhcC
Confidence 778999999887644
No 104
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.68 E-value=0.00019 Score=53.49 Aligned_cols=58 Identities=14% Similarity=0.045 Sum_probs=46.8
Q ss_pred ccccCCCCCCCCCCCCCcccCCCCCCCCcccccc-cccCCchhhhhhhhHhhhhccCCC
Q psy13010 373 REEGTILPEFPHVPRDPVILPQQPTYLPVCFFES-TQNMVSPALKKKIKIEDLIHSSSG 430 (573)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 430 (573)
..++..|++|.+...+++.++|+|.||..|+... .....+|.||..+...++....++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~p~~s 70 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSGPSS 70 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSCSCSC
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccCCCCC
Confidence 3456789999999999999999999999998764 334688999988887777655544
No 105
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.51 E-value=0.065 Score=53.82 Aligned_cols=154 Identities=14% Similarity=0.196 Sum_probs=87.6
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcc-cHHHHHHHHHHHC---C
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS-TLHNWQQEMERFV---P 114 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~-l~~qW~~el~~~~---~ 114 (573)
-.|.|||+..+..+. .....++.-.-+.|||..+.+++...... .....+++++|.. ....+.+.+..+. |
T Consensus 162 ~~L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 379999999887553 23446777789999999877666553332 2224688998943 3333445555443 3
Q ss_pred C-ceE-EeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHH
Q psy13010 115 D-FKV-VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLL 192 (573)
Q Consensus 115 ~-~~v-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~ 192 (573)
. ++- +.-.. .. .... . ....+...+ ...+.+....++++|+||+|.+.+. ...+.++.
T Consensus 237 ~ll~~~~~~~~-~~----------~I~f--~-nGs~i~~ls-----a~~~slrG~~~~~viiDE~a~~~~~-~el~~al~ 296 (385)
T 2o0j_A 237 DFLQPGIVEWN-KG----------SIEL--D-NGSSIGAYA-----SSPDAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQ 296 (385)
T ss_dssp TTTSCCEEEEC-SS----------EEEE--T-TSCEEEEEE-----CSHHHHHTSCCSEEEEESGGGSTTH-HHHHHHHH
T ss_pred HhhhhhhccCC-cc----------EEEe--C-CCCEEEEEE-----CCCCCccCCCCCEEEechhhhcCCC-HHHHHHHH
Confidence 2 110 00000 00 0000 0 111122222 1456677788999999999999873 23444444
Q ss_pred hc-c--cCcEEEEeccCCCCCHHHHHHHHH
Q psy13010 193 GF-S--CRNRLLLSGTPIQNSMAELWALLH 219 (573)
Q Consensus 193 ~l-~--~~~~~lLTgTP~~n~~~el~~ll~ 219 (573)
.. . ...++++++||-..+ -+|.+..
T Consensus 297 ~~ls~~~~~kiiiiSTP~g~n--~fy~l~~ 324 (385)
T 2o0j_A 297 PVISSGRRSKIIITTTPNGLN--HFYDIWT 324 (385)
T ss_dssp HHHHSTTCCEEEEEECCCSSS--HHHHHHH
T ss_pred HHhhcCCCCcEEEEeCCCCch--hHHHHHH
Confidence 32 2 346888899997663 5555443
No 106
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=96.44 E-value=0.00047 Score=51.82 Aligned_cols=48 Identities=13% Similarity=0.197 Sum_probs=39.0
Q ss_pred cccCCCCCCCCCCCCCcccC-CCCCCCCccccccccc---CCchhhhhhhhH
Q psy13010 374 EEGTILPEFPHVPRDPVILP-QQPTYLPVCFFESTQN---MVSPALKKKIKI 421 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~-c~h~~~~~c~~~~~~~---~~~~~~~~~~~~ 421 (573)
.++..|++|.+...+|++++ |+|.||..|+...... ..||.||.....
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 35678999999999999999 9999999998766542 578888875433
No 107
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.36 E-value=0.00039 Score=50.93 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=39.8
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCCccccccc--ccCCchhhhhhhhHhh
Q psy13010 375 EGTILPEFPHVPRDPVILPQQPTYLPVCFFEST--QNMVSPALKKKIKIED 423 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~--~~~~~~~~~~~~~~~~ 423 (573)
++..|++|.+...+|+.++|+|.||..|+.+.. ....+|.|+.....++
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 457899999999999999999999999988665 3457888877665443
No 108
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.28 E-value=0.00056 Score=51.09 Aligned_cols=55 Identities=7% Similarity=0.023 Sum_probs=43.5
Q ss_pred cccCCCCCCCCCCCCCccc-CCCCCCCCcccccccc-cCCchhhhhhhhHhhhhccC
Q psy13010 374 EEGTILPEFPHVPRDPVIL-PQQPTYLPVCFFESTQ-NMVSPALKKKIKIEDLIHSS 428 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~-~c~h~~~~~c~~~~~~-~~~~~~~~~~~~~~~~~~~~ 428 (573)
.++..|++|.+...+|+.+ +|+|.||..|+..... ...+|.|+......++....
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 3567899999999999886 9999999999875532 56888888887766655443
No 109
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.23 E-value=0.00056 Score=54.71 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=35.2
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCCcccccccc-cCCchhhhhh
Q psy13010 374 EEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQ-NMVSPALKKK 418 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~-~~~~~~~~~~ 418 (573)
.++..|++|.+...+|++++|||.||..|+..... ...||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~ 72 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQT 72 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCB
T ss_pred cHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCC
Confidence 45689999999999999999999999999765543 3445555433
No 110
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.19 E-value=0.015 Score=62.43 Aligned_cols=147 Identities=15% Similarity=0.126 Sum_probs=84.6
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHC---C
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFV---P 114 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~---~ 114 (573)
-.|.|||+..+..+. .....++.-.-|.|||..+.+++.......+ ...++++.| ........+.+..+. |
T Consensus 162 ~~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred CcCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 369999999887552 2445677779999999987666555444322 247899999 444444556666554 2
Q ss_pred C-ceEEeecCChhHHHHHHHHhhhcccccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHh
Q psy13010 115 D-FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLG 193 (573)
Q Consensus 115 ~-~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~ 193 (573)
. .+......+.. .... . ....+...+ .+...+....++++|+||+|.+.+.. ..+.++..
T Consensus 237 ~~~~~~~~~~~~~----------~i~~--~-nGs~i~~~s-----~~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~ 297 (592)
T 3cpe_A 237 DFLQPGIVEWNKG----------SIEL--D-NGSSIGAYA-----SSPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQP 297 (592)
T ss_dssp TTTSCCEEEECSS----------EEEE--T-TSCEEEEEE-----CCHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHH
T ss_pred HhhccccccCCcc----------EEEe--c-CCCEEEEEe-----CCCCCccCCCcceEEEehhccCCchh-HHHHHHHH
Confidence 1 01000000000 0000 0 111122111 23456667789999999999997742 44455543
Q ss_pred c-c--cCcEEEEeccCCCC
Q psy13010 194 F-S--CRNRLLLSGTPIQN 209 (573)
Q Consensus 194 l-~--~~~~~lLTgTP~~n 209 (573)
. . ...++++++||...
T Consensus 298 ~l~~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 298 VISSGRRSKIIITTTPNGL 316 (592)
T ss_dssp HHSSSSCCEEEEEECCCTT
T ss_pred HhccCCCceEEEEeCCCCc
Confidence 3 2 34789999999665
No 111
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.13 E-value=0.029 Score=55.57 Aligned_cols=46 Identities=13% Similarity=0.105 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHHHHHHhCCCC---eEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 41 LKHYQLKGMNWLANLYDQGIN---GILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~~~~~---~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
++|+|.+.++.+.+.+..+.. -++.-+.|+|||..|.++...+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 578999999888887776553 4888999999999999999888754
No 112
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.12 E-value=0.00081 Score=51.19 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=40.0
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCCcccccccc--------cCCchhhhhhhhHhhh
Q psy13010 375 EGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQ--------NMVSPALKKKIKIEDL 424 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~--------~~~~~~~~~~~~~~~~ 424 (573)
++..|++|.+...+|++++|+|.||..|+..... ...||.|+......++
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 68 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred cCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence 4578999999999999999999999999875433 4578888777665443
No 113
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.06 E-value=0.016 Score=52.06 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=26.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~ 99 (573)
.++.-.||.|||..++.++......+ .+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g---~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGK---KKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---CEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeec
Confidence 36778999999999887777665542 367888775
No 114
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.01 E-value=0.0014 Score=53.73 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=40.2
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCCccccccccc----CCchhhhhhhhHhhh
Q psy13010 375 EGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQN----MVSPALKKKIKIEDL 424 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~----~~~~~~~~~~~~~~~ 424 (573)
+...|++|.+...+|++++|+|.||..|+...... ..||.|+......++
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 45689999999999999999999999998765443 478888877665443
No 115
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.99 E-value=0.047 Score=49.78 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=27.3
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~ 99 (573)
++.-+||.|||..++..+......+ .++||+.|.
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~g---~kVli~k~~ 65 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFAK---QHAIVFKPC 65 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEec
Confidence 5788999999998888877766553 478999885
No 116
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.94 E-value=0.0024 Score=52.69 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=38.7
Q ss_pred cccCCCCCCCCCCCCCccc-CCCCCCCCcccccccccCCchhhhhhh
Q psy13010 374 EEGTILPEFPHVPRDPVIL-PQQPTYLPVCFFESTQNMVSPALKKKI 419 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~-~c~h~~~~~c~~~~~~~~~~~~~~~~~ 419 (573)
.++..|++|.+...+|+++ +|+|.||..|+..... ..||.|+...
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-~~CP~Cr~~~ 65 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-TGCPVCYTPA 65 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-TBCSSSCCBC
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-CCCcCCCCcC
Confidence 3568899999999999999 9999999999987765 6788887764
No 117
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=95.91 E-value=0.00074 Score=57.70 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=37.3
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCCcccccc-cccCCchhhhhhh
Q psy13010 375 EGTILPEFPHVPRDPVILPQQPTYLPVCFFES-TQNMVSPALKKKI 419 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~-~~~~~~~~~~~~~ 419 (573)
++..|++|.+...+|++++|+|.||..|+... .....||.||..+
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 34579999999999999999999999998754 3456788887765
No 118
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.91 E-value=0.0016 Score=50.15 Aligned_cols=51 Identities=14% Similarity=0.256 Sum_probs=40.6
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCCccccccc-------ccCCchhhhhhhhHhhh
Q psy13010 374 EEGTILPEFPHVPRDPVILPQQPTYLPVCFFEST-------QNMVSPALKKKIKIEDL 424 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~-------~~~~~~~~~~~~~~~~~ 424 (573)
.++..|++|.+...+|..++|+|.||..|+.... ....||.|+.....+++
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 3457899999999999999999999999986542 25678888877665443
No 119
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.84 E-value=0.00063 Score=50.91 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=38.3
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCCccccccc----ccCCchhhhhhhhH
Q psy13010 374 EEGTILPEFPHVPRDPVILPQQPTYLPVCFFEST----QNMVSPALKKKIKI 421 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~----~~~~~~~~~~~~~~ 421 (573)
.++..|++|.+...+|++++|+|.||..|+.... ....||.|+.....
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3567899999999999999999999999987654 34567777765543
No 120
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.77 E-value=0.012 Score=54.48 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=29.0
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~ 99 (573)
+.-.++.-+||.|||..++.++..+...+ .+++++.|.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g---~kVli~~~~ 49 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD---VKYLVFKPK 49 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEEec
Confidence 33348889999999999988888776653 377888774
No 121
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=95.74 E-value=0.00068 Score=54.35 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=42.6
Q ss_pred cccCCCCCCCCCCCCCcc-cCCCCCCCCccccccccc--CCchhhhhhhhHhhhh
Q psy13010 374 EEGTILPEFPHVPRDPVI-LPQQPTYLPVCFFESTQN--MVSPALKKKIKIEDLI 425 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~-~~c~h~~~~~c~~~~~~~--~~~~~~~~~~~~~~~~ 425 (573)
.++..|++|.+...+|+. ++|+|.||..|+...... ..||.||......++.
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV 74 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhH
Confidence 356789999999999999 999999999998765443 5799998887665543
No 122
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=95.73 E-value=0.0007 Score=51.43 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=38.9
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCCcccccccc--cCCchhhhhhhhH
Q psy13010 374 EEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQ--NMVSPALKKKIKI 421 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~--~~~~~~~~~~~~~ 421 (573)
.++..|++|.+...+|++++|+|.||..|+.+... ...||.|+.....
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 35678999999999999999999999999876644 4567777766543
No 123
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.73 E-value=0.0012 Score=52.27 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=29.8
Q ss_pred cccCCCCCCCCCCCCCcccC-CCCCCCCcccccccc
Q psy13010 374 EEGTILPEFPHVPRDPVILP-QQPTYLPVCFFESTQ 408 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~-c~h~~~~~c~~~~~~ 408 (573)
..+..|++|.+...+|++++ |+|.||..|+.....
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIE 40 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHH
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHH
Confidence 35678999999999999996 999999999765543
No 124
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.72 E-value=0.095 Score=51.47 Aligned_cols=47 Identities=13% Similarity=-0.043 Sum_probs=31.7
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHH
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEM 109 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el 109 (573)
...+|.-++|+|||..+-++...+... ..+++.+........+...+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~~~~~~~~ 84 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFAQAMVEHL 84 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHHHHHHHHH
Confidence 466899999999999998888877654 13666655444443443333
No 125
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.67 E-value=0.015 Score=59.28 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=65.2
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhhhcccc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLH 141 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~ 141 (573)
++.-..|+|||.....++.. ++.||++| ..+...|++.+.+.. ..
T Consensus 165 ~I~G~aGsGKTt~I~~~~~~--------~~~lVlTpT~~aa~~l~~kl~~~~----------~~---------------- 210 (446)
T 3vkw_A 165 LVDGVPGCGKTKEILSRVNF--------EEDLILVPGRQAAEMIRRRANASG----------II---------------- 210 (446)
T ss_dssp EEEECTTSCHHHHHHHHCCT--------TTCEEEESCHHHHHHHHHHHTTTS----------CC----------------
T ss_pred EEEcCCCCCHHHHHHHHhcc--------CCeEEEeCCHHHHHHHHHHhhhcC----------cc----------------
Confidence 67889999999877665431 46799999 666677988884321 00
Q ss_pred cCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCCC
Q psy13010 142 TKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208 (573)
Q Consensus 142 ~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~ 208 (573)
..-.+-+.|++.+-..........+++||+||+..+-. ......+..+.+ .+++|.|=|-|
T Consensus 211 ---~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~~--~~l~~l~~~~~~-~~vilvGD~~Q 271 (446)
T 3vkw_A 211 ---VATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLHT--GCVNFLVEMSLC-DIAYVYGDTQQ 271 (446)
T ss_dssp ---CCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSCH--HHHHHHHHHTTC-SEEEEEECTTS
T ss_pred ---ccccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCCH--HHHHHHHHhCCC-CEEEEecCccc
Confidence 00012355666554433322223489999999987622 222223333344 78999998866
No 126
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=95.58 E-value=0.0011 Score=51.16 Aligned_cols=48 Identities=15% Similarity=0.134 Sum_probs=38.3
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCCcccccccc-cCCchhhhhhhhH
Q psy13010 374 EEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQ-NMVSPALKKKIKI 421 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~-~~~~~~~~~~~~~ 421 (573)
.++..|++|.+...+|++++|||.||..|+..... ...||.++.....
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 35688999999999999999999999999865533 4567777655443
No 127
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.041 Score=55.36 Aligned_cols=46 Identities=28% Similarity=0.252 Sum_probs=35.5
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEM 109 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el 109 (573)
.+.|.||.-++|+|||+.|-|++..+.. +++.|....++..|..|-
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~------~f~~v~~s~l~sk~vGes 226 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDC------KFIRVSGAELVQKYIGEG 226 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTC------EEEEEEGGGGSCSSTTHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCC------CceEEEhHHhhccccchH
Confidence 4567799999999999999888776533 677787777777775444
No 128
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.53 E-value=0.0041 Score=45.63 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=38.9
Q ss_pred hccccCCCCCCCCCCCCCcccCCCCC-CCCcccccccccCCchhhhhhhhHh
Q psy13010 372 EREEGTILPEFPHVPRDPVILPQQPT-YLPVCFFESTQNMVSPALKKKIKIE 422 (573)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~c~h~-~~~~c~~~~~~~~~~~~~~~~~~~~ 422 (573)
.+.++..|.+|.+...++++++|+|. +|..|+.. ...+|.||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~---~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY---FQQCPMCRQFVQES 59 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH---CSSCTTTCCCCCCE
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc---CCCCCCCCcchhce
Confidence 34456889999999999999999999 99999874 35788887766543
No 129
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.47 E-value=0.064 Score=48.27 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=27.1
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~ 99 (573)
++.-.||.|||..++.++......+ .+++|+.|.
T Consensus 12 v~~G~mgsGKTT~ll~~a~r~~~~g---~kV~v~k~~ 45 (191)
T 1xx6_A 12 VIVGPMYSGKSEELIRRIRRAKIAK---QKIQVFKPE 45 (191)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEec
Confidence 7788999999998888877776542 478988875
No 130
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=95.40 E-value=0.0014 Score=54.78 Aligned_cols=47 Identities=17% Similarity=0.054 Sum_probs=38.4
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCCccccccc--ccCCchhhhhhhhH
Q psy13010 375 EGTILPEFPHVPRDPVILPQQPTYLPVCFFEST--QNMVSPALKKKIKI 421 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~--~~~~~~~~~~~~~~ 421 (573)
++..|++|.+...+|+.++|+|.||..|+.... ....||.||.....
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 457899999999999999999999999987654 33478888776643
No 131
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.39 E-value=0.0038 Score=46.08 Aligned_cols=49 Identities=12% Similarity=0.136 Sum_probs=39.2
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCCccccccc-ccCCchhhhhhhhHhh
Q psy13010 374 EEGTILPEFPHVPRDPVILPQQPTYLPVCFFEST-QNMVSPALKKKIKIED 423 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~-~~~~~~~~~~~~~~~~ 423 (573)
.++..|++|.+...+ .+++|+|.||..|+.... ....+|.||......+
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 356789999998888 999999999999987553 4677888887765443
No 132
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.38 E-value=0.0022 Score=49.42 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=39.9
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCCccccccc-------ccCCchhhhhhhhHhhh
Q psy13010 375 EGTILPEFPHVPRDPVILPQQPTYLPVCFFEST-------QNMVSPALKKKIKIEDL 424 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~-------~~~~~~~~~~~~~~~~~ 424 (573)
++..|++|.+...+|++++|+|.||..|+.... ....||.|+.....+++
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 457899999999999999999999999986532 25678888777665443
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.35 E-value=0.0021 Score=62.21 Aligned_cols=53 Identities=21% Similarity=0.153 Sum_probs=40.9
Q ss_pred hccccCCCCCCCCCCCCCcccCCCCCCCCccccccccc--CCchhhhhhhhHhhh
Q psy13010 372 EREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQN--MVSPALKKKIKIEDL 424 (573)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~--~~~~~~~~~~~~~~~ 424 (573)
+......|++|.+...+|++++|||.||..|+...... ..||.|+......++
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l 258 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL 258 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGC
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcC
Confidence 34467889999999999999999999999998766432 238888766654433
No 134
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=95.34 E-value=0.0029 Score=50.51 Aligned_cols=47 Identities=9% Similarity=-0.007 Sum_probs=35.9
Q ss_pred ccCCCCCCCCCCCCCccc-CCCCCCCCcccccccc-cCCchhhhhhhhH
Q psy13010 375 EGTILPEFPHVPRDPVIL-PQQPTYLPVCFFESTQ-NMVSPALKKKIKI 421 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~-~c~h~~~~~c~~~~~~-~~~~~~~~~~~~~ 421 (573)
++..|++|.+...+|+.+ +|+|.||..|+..... ...||.|+.....
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 457899999999999888 9999999999765533 3466666554443
No 135
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.27 E-value=0.24 Score=43.69 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHh-----CCCCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 42 KHYQLKGMNWLANLYD-----QGINGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 42 ~~~Q~~~v~~l~~~~~-----~~~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
.+.|..++..+.+... .+...+|.-++|+|||..+-+++..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~ 65 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK 65 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3578888877765442 34455888899999999998888887633
No 136
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=95.26 E-value=0.0052 Score=46.47 Aligned_cols=56 Identities=16% Similarity=0.158 Sum_probs=41.3
Q ss_pred cccCCCCCCCCCC--CCCcccC--CCCCCCCccccccc--ccCCchhhhhhhhHhhhhccCC
Q psy13010 374 EEGTILPEFPHVP--RDPVILP--QQPTYLPVCFFEST--QNMVSPALKKKIKIEDLIHSSS 429 (573)
Q Consensus 374 ~~~~~~~~~~~~~--~~~~~~~--c~h~~~~~c~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 429 (573)
.++..|++|.+.. .++.+.+ |||.||..|+.... ....||.||.......+.....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~ 70 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPL 70 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccC
Confidence 4567899999865 3456665 99999999986553 4578999998887766554433
No 137
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.26 E-value=0.06 Score=52.43 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=28.1
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCC-CCCEEEEcCcc
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDV-WGPFLIISPAS 100 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~-~~~~LIV~P~~ 100 (573)
..+|.-++|+|||..|-++...+...... ..+++.+.+..
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 35889999999999998888887664322 23555555443
No 138
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.15 E-value=0.0017 Score=49.70 Aligned_cols=46 Identities=11% Similarity=0.018 Sum_probs=37.1
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCCcccccccc-cCCchhhhhhh
Q psy13010 374 EEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQ-NMVSPALKKKI 419 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~-~~~~~~~~~~~ 419 (573)
.....|++|.+...+|++++|+|.||..|+..... ...||.|+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 34578999999999999999999999999865533 45677776655
No 139
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=95.09 E-value=0.0018 Score=55.99 Aligned_cols=48 Identities=13% Similarity=0.125 Sum_probs=39.3
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCCccccccccc--CCchhhhhhhhHh
Q psy13010 375 EGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQN--MVSPALKKKIKIE 422 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~--~~~~~~~~~~~~~ 422 (573)
++..|++|.+...+|++++|+|.||..|+...... ..||.|+......
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45789999999999999999999999998766543 3688887776543
No 140
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.09 E-value=0.0075 Score=42.48 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=29.0
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCCcccccc
Q psy13010 375 EGTILPEFPHVPRDPVILPQQPTYLPVCFFES 406 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~ 406 (573)
++..|++|.+...+|++++|+|.||..|+.+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRW 45 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHH
T ss_pred cCCCCccCCcccCccEeCCCCCccCHHHHHHH
Confidence 45789999999999999999999999998665
No 141
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=95.08 E-value=0.0023 Score=50.83 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=38.4
Q ss_pred cccCCCCCCCCCCCCCcccCCC-CCCCCcccccccc-cCCchhhhhhhhH
Q psy13010 374 EEGTILPEFPHVPRDPVILPQQ-PTYLPVCFFESTQ-NMVSPALKKKIKI 421 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~c~-h~~~~~c~~~~~~-~~~~~~~~~~~~~ 421 (573)
.++..|++|.+...+|++++|+ |.||..|+..... ...||.++.....
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 4568899999999999999999 9999999876543 4567777655443
No 142
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.06 E-value=0.0049 Score=44.39 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=29.6
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCCccccccc
Q psy13010 374 EEGTILPEFPHVPRDPVILPQQPTYLPVCFFEST 407 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~ 407 (573)
.++..|++|.+...+|++++|+|.||..|+.+..
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIG 51 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHH
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHH
Confidence 3567899999999999999999999999976543
No 143
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.05 E-value=0.12 Score=47.58 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=26.2
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~ 99 (573)
++.-.||.|||..++..+......+ .+++|+.|.
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~~~g---~kvli~kp~ 56 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYA 56 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTTT---CCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEeec
Confidence 7788999999988887776665442 478888874
No 144
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.05 E-value=0.0034 Score=51.62 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=39.9
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCCcccccccc--cCCchhhhhhhhH
Q psy13010 374 EEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQ--NMVSPALKKKIKI 421 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~--~~~~~~~~~~~~~ 421 (573)
.++..|++|.+...+|+.++|+|.||..|+..... ...||.|+.....
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 34678999999999999999999999999876653 4578888877654
No 145
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=94.98 E-value=0.0022 Score=50.42 Aligned_cols=46 Identities=13% Similarity=0.249 Sum_probs=37.5
Q ss_pred cccCCCCCCCCCCCCCcccC-CCCCCCCccccccc---ccCCchhhhhhh
Q psy13010 374 EEGTILPEFPHVPRDPVILP-QQPTYLPVCFFEST---QNMVSPALKKKI 419 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~-c~h~~~~~c~~~~~---~~~~~~~~~~~~ 419 (573)
.++..|++|.+...+|++++ |+|.||..|+.... ....||.|+...
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 35578999999999999999 99999999987554 235788887654
No 146
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.75 E-value=0.006 Score=45.76 Aligned_cols=43 Identities=14% Similarity=-0.014 Sum_probs=35.2
Q ss_pred ccCCCCCCCCCCCCCcccCCCCC-CCCcccccccccCCchhhhhhhh
Q psy13010 375 EGTILPEFPHVPRDPVILPQQPT-YLPVCFFESTQNMVSPALKKKIK 420 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~c~h~-~~~~c~~~~~~~~~~~~~~~~~~ 420 (573)
++..|++|.+...+++.++|+|. ||..|+... ..+|.||..+.
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~---~~CP~Cr~~i~ 67 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---DKCPMCYTVIT 67 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC---SBCTTTCCBCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC---CCCccCCceec
Confidence 45689999999999999999999 999998543 56777766543
No 147
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.73 E-value=0.097 Score=46.22 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=21.8
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
....+|.-++|+|||..+-++...+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 344588899999999999888887755
No 148
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.73 E-value=0.061 Score=52.91 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=26.9
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHH
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNW 105 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW 105 (573)
.+.+|.-++|+|||..|-++...+. .+++.|....+...|
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~------~~~~~v~~~~l~~~~ 91 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEAN------STFFSVSSSDLVSKW 91 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHT------CEEEEEEHHHHHTTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHC------CCEEEEchHHHhhcc
Confidence 3469999999999999988877642 255555444443333
No 149
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.72 E-value=0.0022 Score=49.83 Aligned_cols=48 Identities=19% Similarity=0.126 Sum_probs=38.6
Q ss_pred ccCCCCCCCCCCCC----CcccCCCCCCCCcccccccc----cCCchhhhhhhhHh
Q psy13010 375 EGTILPEFPHVPRD----PVILPQQPTYLPVCFFESTQ----NMVSPALKKKIKIE 422 (573)
Q Consensus 375 ~~~~~~~~~~~~~~----~~~~~c~h~~~~~c~~~~~~----~~~~~~~~~~~~~~ 422 (573)
+...|++|.+...+ |.+++|+|.||..|+..... ...||.||......
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 45789999998888 99999999999999875533 36788888776544
No 150
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.70 E-value=0.0022 Score=46.70 Aligned_cols=50 Identities=12% Similarity=0.089 Sum_probs=37.3
Q ss_pred ccCCCCCCCC-CCCCC----cccCCCCCCCCccccccc--ccCCchhhhhhhhHhhh
Q psy13010 375 EGTILPEFPH-VPRDP----VILPQQPTYLPVCFFEST--QNMVSPALKKKIKIEDL 424 (573)
Q Consensus 375 ~~~~~~~~~~-~~~~~----~~~~c~h~~~~~c~~~~~--~~~~~~~~~~~~~~~~~ 424 (573)
++..|++|.+ ...+| ++++|+|.||..|+.+.. ....+|.|+.....+++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 4578999999 66666 468999999999987663 23568888777665444
No 151
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=94.68 E-value=0.0054 Score=45.90 Aligned_cols=42 Identities=14% Similarity=-0.015 Sum_probs=35.6
Q ss_pred ccCCCCCCCCCCCCCcccCCCCC-CCCcccccccccCCchhhhhhh
Q psy13010 375 EGTILPEFPHVPRDPVILPQQPT-YLPVCFFESTQNMVSPALKKKI 419 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~c~h~-~~~~c~~~~~~~~~~~~~~~~~ 419 (573)
++..|.+|.+...+++.++|+|. ||..|+... ..+|.||..+
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---~~CP~Cr~~i 65 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---DKCPMCYTVI 65 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC---SBCTTTCCBC
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC---ccCCCcCcCc
Confidence 45789999999999999999999 999998765 6677776654
No 152
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=94.59 E-value=0.0031 Score=55.78 Aligned_cols=49 Identities=18% Similarity=0.121 Sum_probs=38.4
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCCccccccccc--CCchhhhhhhhHh
Q psy13010 374 EEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQN--MVSPALKKKIKIE 422 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~--~~~~~~~~~~~~~ 422 (573)
.....|++|.+...+|++++|||.||..|+...... ..||.|+......
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 456789999999999999999999999998765433 2477777555443
No 153
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=94.57 E-value=0.0063 Score=51.96 Aligned_cols=48 Identities=15% Similarity=0.100 Sum_probs=39.4
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCCccccccccc--CCchhhhhhhhH
Q psy13010 374 EEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQN--MVSPALKKKIKI 421 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~--~~~~~~~~~~~~ 421 (573)
.++..|++|.+...+|+.++|+|.||..|+...... ..||.||.....
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 356789999999999999999999999998776442 478888876543
No 154
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.47 E-value=0.33 Score=49.84 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=30.3
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHH
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNW 105 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW 105 (573)
...+|.-++|+|||..+-++...+....+. .+++.+........+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~-~~v~~v~~~~~~~~~ 175 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPD-LRVMYITSEKFLNDL 175 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCS-SCEEEEEHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEeeHHHHHHHH
Confidence 456899999999999998888877665322 355555444433333
No 155
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=94.45 E-value=0.0049 Score=50.02 Aligned_cols=48 Identities=6% Similarity=0.046 Sum_probs=38.4
Q ss_pred cccCCCCCCCCCCCCCccc-CCCCCCCCcccccccc-cCCchhhhhhhhH
Q psy13010 374 EEGTILPEFPHVPRDPVIL-PQQPTYLPVCFFESTQ-NMVSPALKKKIKI 421 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~-~c~h~~~~~c~~~~~~-~~~~~~~~~~~~~ 421 (573)
.++..|++|.+...+|+.+ +|+|.||..|+..... ...||.|+.....
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 4567899999999999997 9999999999875532 4678888766543
No 156
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.32 E-value=0.099 Score=52.18 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=20.6
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
.+.+|.-++|+|||..|-++...+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 456899999999999998888776
No 157
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=94.29 E-value=0.0082 Score=43.94 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=36.4
Q ss_pred cccCCCCCCCCCCCCC-cccCCCCCCCCccccccc-ccCCchhhhhhhh
Q psy13010 374 EEGTILPEFPHVPRDP-VILPQQPTYLPVCFFEST-QNMVSPALKKKIK 420 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~-~~~~c~h~~~~~c~~~~~-~~~~~~~~~~~~~ 420 (573)
..+..|++|.+...++ ..++|+|.||..|+.... ....+|.|+....
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 3457899999998886 789999999999986542 2457777776653
No 158
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=94.18 E-value=0.0042 Score=51.15 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=40.7
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCCcccccccc--cCCchhhhhhhhHhhh
Q psy13010 375 EGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQ--NMVSPALKKKIKIEDL 424 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~--~~~~~~~~~~~~~~~~ 424 (573)
++..|++|.+...+|+.++|+|.||..|+..... ...+|.|+......++
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 4678999999999999999999999999876543 4578888877665443
No 159
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.11 E-value=0.17 Score=49.52 Aligned_cols=41 Identities=10% Similarity=0.261 Sum_probs=25.3
Q ss_pred CccEEEEccccccc-Cc-chHHHHHHHhcccCcEEEEeccCCC
Q psy13010 168 KWQYLILDEAQAIK-SS-SSMRWKLLLGFSCRNRLLLSGTPIQ 208 (573)
Q Consensus 168 ~~~~vIiDE~h~~k-n~-~s~~~~~~~~l~~~~~~lLTgTP~~ 208 (573)
...+||+||+|.+. .. .....+.+.......++++|+++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 57899999999985 21 1222223333345667777777654
No 160
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.11 E-value=0.08 Score=49.12 Aligned_cols=40 Identities=15% Similarity=-0.085 Sum_probs=27.9
Q ss_pred HHHHHHHHHHh--CCCCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 47 KGMNWLANLYD--QGINGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 47 ~~v~~l~~~~~--~~~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
.++..+..... .+...+|.-++|+|||..+-++...+...
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 44444444443 34455889999999999998888777654
No 161
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.07 E-value=1.5 Score=42.70 Aligned_cols=45 Identities=2% Similarity=-0.165 Sum_probs=31.6
Q ss_pred HHHHHHHHH-HHHHHHhC--CCCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 42 KHYQLKGMN-WLANLYDQ--GINGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 42 ~~~Q~~~v~-~l~~~~~~--~~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
|+-|...+. ++...+.. +...+|.-.+|+|||.++-+++..+...
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 455555554 44454443 3334889999999999999999888754
No 162
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=94.06 E-value=0.0047 Score=61.45 Aligned_cols=49 Identities=14% Similarity=0.057 Sum_probs=40.3
Q ss_pred cCCCCCCCCCCCCCcccCCCCCCCCccccccc--ccCCchhhhhhhhHhhh
Q psy13010 376 GTILPEFPHVPRDPVILPQQPTYLPVCFFEST--QNMVSPALKKKIKIEDL 424 (573)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~--~~~~~~~~~~~~~~~~~ 424 (573)
...|++|.+...++++++|+|.||..|+..-. ....||.||........
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 46899999999999999999999999986543 35789999887765443
No 163
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=94.05 E-value=0.016 Score=43.75 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=40.0
Q ss_pred cccCCCCCCCCCCCCC---cccCCCCCCCCccccccc-ccCCchhhhhhhhHhhhhcc
Q psy13010 374 EEGTILPEFPHVPRDP---VILPQQPTYLPVCFFEST-QNMVSPALKKKIKIEDLIHS 427 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~---~~~~c~h~~~~~c~~~~~-~~~~~~~~~~~~~~~~~~~~ 427 (573)
..+..|+||.+...++ .+++|+|.||..|+..-. ....||.||......++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 4568899998876655 446999999999987542 34678888888776665543
No 164
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=94.02 E-value=0.012 Score=40.83 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=32.2
Q ss_pred cccCCCCCCCCCCCC---CcccC-CCCCCCCccccccc-ccCCchhhhhh
Q psy13010 374 EEGTILPEFPHVPRD---PVILP-QQPTYLPVCFFEST-QNMVSPALKKK 418 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~---~~~~~-c~h~~~~~c~~~~~-~~~~~~~~~~~ 418 (573)
+++..|++|.+...+ +..++ |+|.||..|+..-. ....+|.+|..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~ 52 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCE
Confidence 345789999987665 66676 99999999986542 24556666544
No 165
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=94.02 E-value=0.0039 Score=51.51 Aligned_cols=49 Identities=16% Similarity=0.195 Sum_probs=39.0
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCCccccccccc--CCchhhhhhhhHh
Q psy13010 374 EEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQN--MVSPALKKKIKIE 422 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~~--~~~~~~~~~~~~~ 422 (573)
.++..|++|.+...+|+.++|+|.||..|+...... ..||.|+......
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 345789999999999999999999999998765332 3788887666543
No 166
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.01 E-value=0.22 Score=49.62 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHHHHHHhCCC----CeEEeCCCCCCHHHHHHHHHHHHh
Q psy13010 41 LKHYQLKGMNWLANLYDQGI----NGILADEMGLGKTVQSIAFLCHIA 84 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~~~~----~~ll~de~G~GKT~~~ia~~~~~~ 84 (573)
-.+.++.++..+......+. +.+|.-++|+|||..|-++...+.
T Consensus 48 G~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 48 GQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35677777766666665433 458899999999999988888775
No 167
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.97 E-value=0.13 Score=52.57 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=33.6
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQE 108 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~e 108 (573)
...|.||.-.+|+|||+.|-|++..+.. +++.|....++..|..+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~------~fi~vs~s~L~sk~vGe 286 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDA------TFIRVIGSELVQKYVGE 286 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTC------EEEEEEGGGGCCCSSSH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCC------CeEEEEhHHhhcccCCH
Confidence 4556799999999999999888776543 66777777776666443
No 168
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=93.87 E-value=0.0054 Score=54.06 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=37.9
Q ss_pred ccCCCCCCCCCCCCCccc-CCCCCCCCcccccccc--cCCchhhhhhhh
Q psy13010 375 EGTILPEFPHVPRDPVIL-PQQPTYLPVCFFESTQ--NMVSPALKKKIK 420 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~-~c~h~~~~~c~~~~~~--~~~~~~~~~~~~ 420 (573)
++..|++|.+...+|+.+ +|+|.||..|+..... ...||.|+....
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 456899999999999987 9999999999876644 466888877653
No 169
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=93.80 E-value=0.0017 Score=48.12 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=39.0
Q ss_pred hccccCCCCCCCCCCCCC-------cccCCCCCCCCcccccc-cccCCchhhhhhhhHhh
Q psy13010 372 EREEGTILPEFPHVPRDP-------VILPQQPTYLPVCFFES-TQNMVSPALKKKIKIED 423 (573)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~-------~~~~c~h~~~~~c~~~~-~~~~~~~~~~~~~~~~~ 423 (573)
...++..|++|.+...++ .+++|+|.||..|+.+- .....+|.||......+
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 345678899999887766 88999999999998654 23457888877665443
No 170
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.80 E-value=0.36 Score=43.73 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=21.2
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
..+|.-+.|+|||..+-++...+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 46899999999999988888776543
No 171
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.76 E-value=0.0065 Score=45.36 Aligned_cols=49 Identities=10% Similarity=0.042 Sum_probs=36.1
Q ss_pred ccccCCCCCCCCCCCCCccc---CCCCCCCCccccccc-ccCCchhhhhhhhH
Q psy13010 373 REEGTILPEFPHVPRDPVIL---PQQPTYLPVCFFEST-QNMVSPALKKKIKI 421 (573)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~---~c~h~~~~~c~~~~~-~~~~~~~~~~~~~~ 421 (573)
...+..|++|.+...++..+ +|+|.||..|+..-. ....||.||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 34567899999987766665 999999999986542 23478888776543
No 172
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.76 E-value=0.11 Score=52.65 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=34.3
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEM 109 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el 109 (573)
..|.||.-.+|+|||+.|-|++..+.. +++.|....++..|..+-
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~------~fi~v~~s~l~sk~vGes 260 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSA------TFLRIVGSELIQKYLGDG 260 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTC------EEEEEESGGGCCSSSSHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCC------CEEEEEHHHhhhccCchH
Confidence 456799999999999999888877543 677787777776665443
No 173
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=93.64 E-value=0.01 Score=45.02 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=38.1
Q ss_pred ccCCCCCCCCCCCCCcccCCCCC-CCCcccccccccCCchhhhhhhhHhh
Q psy13010 375 EGTILPEFPHVPRDPVILPQQPT-YLPVCFFESTQNMVSPALKKKIKIED 423 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~c~h~-~~~~c~~~~~~~~~~~~~~~~~~~~~ 423 (573)
++..|.+|.+...+++.++|+|. +|..|+.... .+|.||..+....
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~---~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ---SCPVCRSRVEHVQ 63 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS---BCTTTCCBCCEEE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC---cCCCCCchhhCeE
Confidence 45689999999999999999999 9999987653 7888887765543
No 174
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.61 E-value=0.11 Score=49.91 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=20.5
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
.+.+.+|.-++|+|||..+-++...+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 44566999999999999887776653
No 175
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.59 E-value=0.26 Score=44.79 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=25.6
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~ 99 (573)
++.-+||.|||..++-.+......+ .+++|+.|.
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~~g---~kvli~kp~ 65 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIYAK---QKVVVFKPA 65 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC---CceEEEEec
Confidence 7888999999987777765555442 478888884
No 176
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.54 E-value=0.18 Score=42.96 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=20.7
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHH
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCH 82 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~ 82 (573)
..+...+|.-++|+|||..|-++...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 45667899999999999988666543
No 177
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.33 E-value=0.078 Score=52.12 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=20.2
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
.+.+|.-++|+|||..|-++...+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 456899999999999998887765
No 178
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.24 E-value=0.4 Score=45.03 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=19.7
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
.+.+|.-++|+|||..|-++...+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 445889999999999988877754
No 179
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.23 E-value=0.13 Score=52.54 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=33.1
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQE 108 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~e 108 (573)
+.|.||.-++|+|||+.|-|++..+.. +++.|....++..|..+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~------~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGA------NFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTC------EEEEEEGGGTCCSSSSH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC------CEEEEehhhhccccchH
Confidence 456799999999999999888877642 66777767666666443
No 180
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=93.01 E-value=0.0028 Score=45.78 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=37.4
Q ss_pred ccCCCCCCCCCCCCC-------cccCCCCCCCCccccccc-ccCCchhhhhhhhHhhh
Q psy13010 375 EGTILPEFPHVPRDP-------VILPQQPTYLPVCFFEST-QNMVSPALKKKIKIEDL 424 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~-------~~~~c~h~~~~~c~~~~~-~~~~~~~~~~~~~~~~~ 424 (573)
++..|++|.+...++ .+++|+|.||..|+.+.. ....+|.+|.....+++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 356799999877665 789999999999986543 35678888777665443
No 181
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.93 E-value=0.12 Score=51.15 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=26.4
Q ss_pred HHHHHHHHhCC--CCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 49 MNWLANLYDQG--INGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 49 v~~l~~~~~~~--~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
+..+...+..+ ...+|.-++|+|||..+-++...+..
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33344444444 34789999999999999888887653
No 182
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=92.88 E-value=0.017 Score=40.12 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=31.3
Q ss_pred ccCCCCCCCCCCCC----CcccCCCCCCCCcccccccc-cCCchhhhh
Q psy13010 375 EGTILPEFPHVPRD----PVILPQQPTYLPVCFFESTQ-NMVSPALKK 417 (573)
Q Consensus 375 ~~~~~~~~~~~~~~----~~~~~c~h~~~~~c~~~~~~-~~~~~~~~~ 417 (573)
.+..|++|.+...+ +.+++|+|.||..|+.+-.. ...+|.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~ 51 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSG 51 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCC
Confidence 45789999987644 78899999999999865422 245555543
No 183
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.81 E-value=1.3 Score=38.80 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=21.9
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
...+|.-+.|+|||..+-+++..+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999888887755
No 184
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=92.75 E-value=0.028 Score=55.49 Aligned_cols=44 Identities=16% Similarity=0.062 Sum_probs=37.5
Q ss_pred cccCCCCCCCCCCCCCcccCCCCC-CCCcccccccccCCchhhhhhhh
Q psy13010 374 EEGTILPEFPHVPRDPVILPQQPT-YLPVCFFESTQNMVSPALKKKIK 420 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~c~h~-~~~~c~~~~~~~~~~~~~~~~~~ 420 (573)
.++..|++|.+...+++.++|+|. ||..|+... ..||.||..+.
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~---~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL---RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC---SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC---CcCCCCCCCcc
Confidence 356899999999999999999999 999998765 67888877653
No 185
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.72 E-value=0.29 Score=46.35 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=26.2
Q ss_pred HhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc
Q psy13010 56 YDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS 97 (573)
Q Consensus 56 ~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~ 97 (573)
...+...+|.-++|+|||..|-++....... ..|++.|-
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~~~~~~~---~~~~~~v~ 64 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLHYLSSRW---QGPFISLN 64 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHHHTSTTT---TSCEEEEE
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHHhcCcc---CCCeEEEe
Confidence 3456677999999999999886666544322 24655543
No 186
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.55 E-value=0.16 Score=43.12 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=18.2
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHH
Q psy13010 57 DQGINGILADEMGLGKTVQSIAF 79 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~ 79 (573)
..+...+|.-++|+|||..|-++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCCcEEEECCCCccHHHHHHHH
Confidence 45667899999999999877444
No 187
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=92.55 E-value=0.022 Score=46.55 Aligned_cols=46 Identities=7% Similarity=-0.012 Sum_probs=34.8
Q ss_pred ccCCCCCCCCCCCCCc------------------ccCCCCCCCCccccccc------ccCCchhhhhhhh
Q psy13010 375 EGTILPEFPHVPRDPV------------------ILPQQPTYLPVCFFEST------QNMVSPALKKKIK 420 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~------------------~~~c~h~~~~~c~~~~~------~~~~~~~~~~~~~ 420 (573)
.+..|+||.+...++. +++|+|.||..|+..-. ....||.||....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 4568999998776554 78999999999986543 3567888876554
No 188
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.40 E-value=0.44 Score=46.25 Aligned_cols=38 Identities=8% Similarity=-0.063 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhCCC--CeEEeCCCCCCHHHHHHHHHHH
Q psy13010 45 QLKGMNWLANLYDQGI--NGILADEMGLGKTVQSIAFLCH 82 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~--~~ll~de~G~GKT~~~ia~~~~ 82 (573)
|.+++..+.+.+..+. .-++.-+.|+|||..+.++...
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 5566666666666555 2388999999999998887764
No 189
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=92.39 E-value=0.013 Score=54.60 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=39.2
Q ss_pred ccccCCCCCCCCCCCCCccc-CCCCCCCCcccccccc---cCCchh--hhhhhhHhhh
Q psy13010 373 REEGTILPEFPHVPRDPVIL-PQQPTYLPVCFFESTQ---NMVSPA--LKKKIKIEDL 424 (573)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~-~c~h~~~~~c~~~~~~---~~~~~~--~~~~~~~~~~ 424 (573)
...+..|++|.+...+|+.+ .|||.||..|+..... ...||. |+......++
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 35668899999999999985 9999999999876543 356887 5454444443
No 190
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.37 E-value=0.77 Score=42.05 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=21.0
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
..+|.-+.|+|||..+-++...+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 45889999999999988887776543
No 191
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=92.35 E-value=0.012 Score=42.46 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=37.5
Q ss_pred hhccccCCCCCCCCCCCCCccc--CCCCC-CCCccccccc-ccCCchhhhhhh
Q psy13010 371 MEREEGTILPEFPHVPRDPVIL--PQQPT-YLPVCFFEST-QNMVSPALKKKI 419 (573)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~--~c~h~-~~~~c~~~~~-~~~~~~~~~~~~ 419 (573)
+.+.++..|.+|.+...+++++ +|+|. +|..|+.... ....+|.+|..+
T Consensus 3 l~~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 55 (64)
T 2vje_A 3 LPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55 (64)
T ss_dssp --CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCC
T ss_pred CCCCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcch
Confidence 4456778999999999999987 99999 7999976543 345678777655
No 192
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.34 E-value=0.22 Score=50.25 Aligned_cols=41 Identities=27% Similarity=0.272 Sum_probs=26.6
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNW 105 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW 105 (573)
..+.+|.-++|+|||..|-++...+ + .+++.|.+..+...|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~----~--~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES----N--ATFFNISAASLTSKY 188 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT----T--CEEEEECSCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh----c--CcEEEeeHHHhhccc
Confidence 3456999999999999987775542 1 366666666555444
No 193
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.14 E-value=0.18 Score=51.38 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=31.6
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQ 106 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~ 106 (573)
.+.|.||.-++|+|||+.|-|++..+. .+++.|....++..|.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~------~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTK------AAFIRVNGSEFVHKYL 247 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHT------CEEEEEEGGGTCCSSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC------CCeEEEecchhhcccc
Confidence 345669999999999999988887663 2667776666665553
No 194
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.12 E-value=0.14 Score=52.76 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=25.8
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHH
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNW 105 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW 105 (573)
.+.+|.-++|+|||..|-++...+. ..+++.|....++..|
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~-----~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEAN-----NSTFFSISSSDLVSKW 208 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCC-----SSEEEEECCC------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC-----CCCEEEEeHHHHHhhh
Confidence 4568999999999999988777651 1366666666555444
No 195
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.10 E-value=0.082 Score=53.92 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=33.7
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQE 108 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~e 108 (573)
+.|.||.-++|+|||+.|-|++..+.. +++.|....++..|..+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~------~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNA------TFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTC------EEEEEEGGGGCSSCSSH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCC------CEEEEehhhhhhcccch
Confidence 456799999999999999888776532 67778777777666443
No 196
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.84 E-value=0.38 Score=48.14 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.3
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
..+|.-+.|+|||..+-+++..+...
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35888899999999998888877543
No 197
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.84 E-value=0.0078 Score=44.13 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=34.0
Q ss_pred cccCCCCCCCCCCCCC-------cccCCCCCCCCcccccccc-cCCchhhhhh
Q psy13010 374 EEGTILPEFPHVPRDP-------VILPQQPTYLPVCFFESTQ-NMVSPALKKK 418 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~-------~~~~c~h~~~~~c~~~~~~-~~~~~~~~~~ 418 (573)
.++..|++|.+...++ .+++|+|.||..|+..... ...+|.||..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~ 65 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 65 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCc
Confidence 4567899999977766 7899999999999865432 4566666654
No 198
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.80 E-value=0.33 Score=47.07 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=27.9
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNW 105 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW 105 (573)
.+.+.+|.-++|+|||..|-++...+. .+++.|....+...|
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~------~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISIKGPELLTMW 89 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTT------CEEEEECHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhC------CCEEEEEhHHHHhhh
Confidence 345568999999999999877776542 355555444444433
No 199
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=91.74 E-value=0.019 Score=42.09 Aligned_cols=47 Identities=17% Similarity=0.146 Sum_probs=33.4
Q ss_pred ccccCCCCCCCCCC---CCCcccCCCCCCCCccccccc-ccCCchhhhhhh
Q psy13010 373 REEGTILPEFPHVP---RDPVILPQQPTYLPVCFFEST-QNMVSPALKKKI 419 (573)
Q Consensus 373 ~~~~~~~~~~~~~~---~~~~~~~c~h~~~~~c~~~~~-~~~~~~~~~~~~ 419 (573)
...+..|+||.+.. ..+..++|+|.||..|+..-. ....+|.||...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccc
Confidence 44567899997754 456789999999999986442 234577776544
No 200
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.65 E-value=1.1 Score=40.13 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=24.4
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~ 99 (573)
++.-.||+|||...+-.+......+ .+++++.|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~~~---~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEccc
Confidence 7888999999976665555444432 578888875
No 201
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.63 E-value=0.37 Score=46.91 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.0
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
..+|.-+.|+|||..+-++...+..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcC
Confidence 3688999999999999888887653
No 202
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.40 E-value=0.35 Score=49.79 Aligned_cols=23 Identities=26% Similarity=0.119 Sum_probs=18.6
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
..+|.-++|+|||..+-++...+
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 46899999999999887666654
No 203
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.30 E-value=0.39 Score=46.30 Aligned_cols=40 Identities=13% Similarity=0.013 Sum_probs=27.0
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHH
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNW 105 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW 105 (573)
.+.+|.-++|+|||..|-+++..+. .+++.|....+...|
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~------~~~i~v~~~~l~~~~ 76 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMG------INPIMMSAGELESGN 76 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHT------CCCEEEEHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC------CCEEEEeHHHhhhcc
Confidence 3557778999999999988887762 255655544444333
No 204
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.18 E-value=0.28 Score=48.84 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=25.3
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCccc
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAST 101 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l 101 (573)
..+.+|.-++|+|||..|-++...+. .+++.|....+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~------~~~~~i~~~~l 153 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSG------ATFFSISASSL 153 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTT------CEEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC------CeEEEEehHHh
Confidence 44568999999999999877766531 25555544433
No 205
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=90.88 E-value=0.019 Score=50.73 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=39.2
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCCcccccccc--cCCchhhhhhhhHh
Q psy13010 374 EEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQ--NMVSPALKKKIKIE 422 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~c~h~~~~~c~~~~~~--~~~~~~~~~~~~~~ 422 (573)
.++..|++|.+...+|+.++|+|.||..|+.+... ...+|.++......
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 35578999999999999999999999999876543 23788887665543
No 206
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=90.86 E-value=0.015 Score=45.48 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=33.7
Q ss_pred ccccCCCCCCCCCCCC---CcccCCCCCCCCcccccc-cccCCchhhhhh
Q psy13010 373 REEGTILPEFPHVPRD---PVILPQQPTYLPVCFFES-TQNMVSPALKKK 418 (573)
Q Consensus 373 ~~~~~~~~~~~~~~~~---~~~~~c~h~~~~~c~~~~-~~~~~~~~~~~~ 418 (573)
...+..|++|.+.... +..++|+|.||..|+..- .....||.||..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCcc
Confidence 3456789999876555 777999999999998653 234567777654
No 207
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.85 E-value=0.016 Score=43.28 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=34.1
Q ss_pred ccccCCCCCCCCCCCCC---cccCCCCCCCCccccccc-ccCCchhhhhhh
Q psy13010 373 REEGTILPEFPHVPRDP---VILPQQPTYLPVCFFEST-QNMVSPALKKKI 419 (573)
Q Consensus 373 ~~~~~~~~~~~~~~~~~---~~~~c~h~~~~~c~~~~~-~~~~~~~~~~~~ 419 (573)
..++..|++|.+....+ ..++|+|.||..|+..-. ....||.||...
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 70 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADS 70 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcC
Confidence 34567899999876665 778999999999986542 245677776543
No 208
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.67 E-value=0.62 Score=46.33 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=20.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
.+|.-+.|+|||..+-++...+...
T Consensus 41 ~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4899999999999998888777543
No 209
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.52 E-value=0.6 Score=46.51 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=20.4
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
+.+.+|.-++|+|||..|-++...+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4567999999999999987776655
No 210
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=90.40 E-value=0.24 Score=44.79 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=17.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q psy13010 62 GILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~ 83 (573)
.++.-.+|+|||..|+..+...
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 4788899999999987765544
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=90.40 E-value=0.51 Score=49.08 Aligned_cols=25 Identities=24% Similarity=0.130 Sum_probs=19.9
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCH 82 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~ 82 (573)
...+.+|.-++|+|||..|-++...
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHH
Confidence 3456699999999999988777554
No 212
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.75 E-value=1.7 Score=44.61 Aligned_cols=53 Identities=19% Similarity=0.086 Sum_probs=38.0
Q ss_pred HhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHH
Q psy13010 56 YDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEME 110 (573)
Q Consensus 56 ~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~ 110 (573)
+..+.-.+|+-.+|+|||..++.++.......+ .+++++....-..++...+.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--~~vl~~slE~~~~~l~~R~~ 249 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--VGVGIYSLEMPAAQLTLRMM 249 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSSCHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEECCCCHHHHHHHHH
Confidence 334445599999999999999888887765322 48899887665666665543
No 213
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.59 E-value=0.98 Score=42.76 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=19.2
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
+.+|.-++|+|||..|-++....
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 45888999999999998877763
No 214
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.57 E-value=3.6 Score=42.21 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=36.6
Q ss_pred HhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHH
Q psy13010 56 YDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEM 109 (573)
Q Consensus 56 ~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el 109 (573)
+..+.-.+|+-.+|+|||..++.++.......+ .+++++....-..++...+
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g--~~Vl~~s~E~s~~~l~~r~ 251 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTN--ENVAIFSLEMSAQQLVMRM 251 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS--CCEEEEESSSCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC--CcEEEEECCCCHHHHHHHH
Confidence 334445699999999999999888887765422 3888888755455555443
No 215
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.57 E-value=0.96 Score=45.04 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=22.1
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
+...+|.-+.|+|||..+-+++..+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445688999999999999888877754
No 216
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=89.56 E-value=0.03 Score=40.24 Aligned_cols=46 Identities=20% Similarity=0.082 Sum_probs=36.0
Q ss_pred cccCCCCCCCCCCCCCccc--CCCCC-CCCccccccc-ccCCchhhhhhh
Q psy13010 374 EEGTILPEFPHVPRDPVIL--PQQPT-YLPVCFFEST-QNMVSPALKKKI 419 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~--~c~h~-~~~~c~~~~~-~~~~~~~~~~~~ 419 (573)
..+..|.+|.+...++.++ +|+|. +|..|+.... ....+|.+|..+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 3457899999999988888 99998 9999976543 235788777665
No 217
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=89.46 E-value=0.022 Score=47.81 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=42.6
Q ss_pred cccCCCCCCCCCCCCC-------cccCCCCCCCCcccccc-cccCCchhhhhhhhHhhhhcc
Q psy13010 374 EEGTILPEFPHVPRDP-------VILPQQPTYLPVCFFES-TQNMVSPALKKKIKIEDLIHS 427 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~-------~~~~c~h~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~~~ 427 (573)
.++..|++|.+...++ ++++|+|.||..|+.+. .....+|.++.......+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccc
Confidence 3567899999988777 89999999999998765 344578888888876665443
No 218
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.94 E-value=0.8 Score=44.39 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
.+|.-+.|+|||..+-++...+..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC
Confidence 689999999999999888887653
No 219
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.70 E-value=4.5 Score=40.08 Aligned_cols=25 Identities=24% Similarity=0.204 Sum_probs=20.6
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
..+|.-+.|+|||..+-+++..+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4688999999999998887776654
No 220
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=88.54 E-value=0.66 Score=44.57 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=19.9
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
+.+.+|.-++|+|||..+-++...+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4556899999999999887776644
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=88.13 E-value=1.1 Score=42.05 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=19.9
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
..+.+|.-++|+|||..+-++...+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4456889999999999887776654
No 222
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=88.11 E-value=2.2 Score=41.19 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=25.9
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS 97 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~ 97 (573)
..+...+|.-++|+|||..|-++....... .+|++.|-
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~---~~~~v~v~ 60 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARS---DRPLVTLN 60 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCS---SSCCCEEE
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCccc---CCCeEEEe
Confidence 456677999999999999886666543322 24655553
No 223
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=88.09 E-value=0.043 Score=39.07 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=40.8
Q ss_pred cCCCCCCCCCCCCCccc-CCCCCCCCcccccccc-cCCchhhhhhhhHhhhhcc
Q psy13010 376 GTILPEFPHVPRDPVIL-PQQPTYLPVCFFESTQ-NMVSPALKKKIKIEDLIHS 427 (573)
Q Consensus 376 ~~~~~~~~~~~~~~~~~-~c~h~~~~~c~~~~~~-~~~~~~~~~~~~~~~~~~~ 427 (573)
...|+++.+.-++|+++ +++|.|+..|+.+... ...||..+......+++.-
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEI 56 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEEC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEEC
Confidence 35799999999999999 9999999999876643 3457777777776666543
No 224
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=87.53 E-value=0.56 Score=48.39 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHHHHHHhC----CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccH
Q psy13010 41 LKHYQLKGMNWLANLYDQ----GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTL 102 (573)
Q Consensus 41 L~~~Q~~~v~~l~~~~~~----~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~ 102 (573)
-.+..+..+..+...+.. +.+.+|.-++|+|||..|-++...+... .+++.|....+.
T Consensus 41 G~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~----~~~~~~~~~~~~ 102 (456)
T 2c9o_A 41 GQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK----VPFCPMVGSEVY 102 (456)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT----SCEEEEEGGGGC
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC----ceEEEEeHHHHH
Confidence 344555554444444432 2456999999999999999888876432 355555554443
No 225
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.14 E-value=1.3 Score=39.75 Aligned_cols=34 Identities=26% Similarity=0.241 Sum_probs=25.7
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEE
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV 96 (573)
.+.+|.-++|+|||..+.+++..+...+ .+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~---~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRN---VSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTT---CCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEE
Confidence 5568889999999999988888776542 355544
No 226
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.04 E-value=2.6 Score=45.09 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHh
Q psy13010 46 LKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIA 84 (573)
Q Consensus 46 ~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~ 84 (573)
..++..+......+...+|.-+.|+|||..+-++...+.
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 344444445556677889999999999998877776553
No 227
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.91 E-value=8.2 Score=37.27 Aligned_cols=53 Identities=11% Similarity=0.051 Sum_probs=38.2
Q ss_pred HhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHH
Q psy13010 56 YDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMER 111 (573)
Q Consensus 56 ~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~ 111 (573)
+..+.-.+|+-.+|+|||..++.++......+ .+++++.-..-..+....+..
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE~s~~~l~~R~~~ 117 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLEMGKKENIKRLIV 117 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESSSCHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECCCCHHHHHHHHHH
Confidence 34455569999999999999988877666543 588999876555565555543
No 228
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=86.91 E-value=3.6 Score=45.31 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=26.3
Q ss_pred HHHHHHHHh--CCCCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 49 MNWLANLYD--QGINGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 49 v~~l~~~~~--~~~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
+..+...+. ...+.+|.-++|+|||..+-++...+..
T Consensus 195 i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 333444443 3445689999999999999888877654
No 229
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.65 E-value=5 Score=36.06 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=28.6
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcc--cHHHHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS--TLHNWQQ 107 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~--l~~qW~~ 107 (573)
.+.-.+|.-+.|+|||..+..++. .. + ++++++.-.. -...|.+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~-~--~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LS-G--KKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HH-C--SEEEEEESSCCCCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---Hc-C--CcEEEEECCCCCCHHHHHH
Confidence 344458888999999998877776 22 1 4677776543 3344544
No 230
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=86.52 E-value=3.2 Score=42.82 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=19.9
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
+.+.+|.-++|+|||..+-++....
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3456889999999999987776654
No 231
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.47 E-value=4.2 Score=39.84 Aligned_cols=55 Identities=11% Similarity=0.099 Sum_probs=39.1
Q ss_pred HHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHH
Q psy13010 52 LANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEM 109 (573)
Q Consensus 52 l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el 109 (573)
+..-+..+.-.+|+-.+|+|||..++.++...... .++++++....-..+....+
T Consensus 39 ~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSlEms~~ql~~Rl 93 (338)
T 4a1f_A 39 YTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSLEMSAEQLALRA 93 (338)
T ss_dssp HHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEESSSCHHHHHHHH
T ss_pred HhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCCCHHHHHHHH
Confidence 33334455556999999999999998888777663 25889998765555655444
No 232
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.18 E-value=0.54 Score=51.77 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=29.2
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNW 105 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW 105 (573)
..|.||.-.+|+|||+.|-++...+. .+++.|....++..|
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~------~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQ------ANFISIKGPELLTMW 551 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTT------CEEEECCHHHHHTTT
T ss_pred CceEEEecCCCCCchHHHHHHHHHhC------CceEEeccchhhccc
Confidence 34679999999999998877666542 255666556666666
No 233
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=86.11 E-value=0.93 Score=49.34 Aligned_cols=69 Identities=10% Similarity=0.042 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhh-cCCCCCEEEEcC-cccHHHHHHHHHHHCC
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAET-YDVWGPFLIISP-ASTLHNWQQEMERFVP 114 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~-~~~~~~~LIV~P-~~l~~qW~~el~~~~~ 114 (573)
.|.+.|+++|.. ..+..++....|+|||.+.+.-+..+... +-....+|+|+. .....+.++.+....+
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 377899999852 24556788899999999998877777654 223467999987 4555566777766543
No 234
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.89 E-value=0.068 Score=40.52 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=33.2
Q ss_pred ccCCCCCCCCCCCC--------------Cccc-CCCCCCCCcccccc-cccCCchhhhhhhhH
Q psy13010 375 EGTILPEFPHVPRD--------------PVIL-PQQPTYLPVCFFES-TQNMVSPALKKKIKI 421 (573)
Q Consensus 375 ~~~~~~~~~~~~~~--------------~~~~-~c~h~~~~~c~~~~-~~~~~~~~~~~~~~~ 421 (573)
++..|+||.+..++ +..+ +|+|.|+..|+.+- .....+|.||.....
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 56678998887655 3344 59999999998653 234578888876544
No 235
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.51 E-value=2.4 Score=44.31 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=20.0
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
...+|.-++|+|||..|-+++..+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 456899999999999988877765
No 236
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.42 E-value=2.2 Score=42.22 Aligned_cols=28 Identities=21% Similarity=0.146 Sum_probs=22.4
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
+...+|.-+.|+|||..+-+++..+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3456888899999999998888877654
No 237
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=85.07 E-value=0.62 Score=45.09 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCC--CeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 48 GMNWLANLYDQGI--NGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 48 ~v~~l~~~~~~~~--~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
.+..+...+..+. ..+|.-+.|+|||..+-++...+..
T Consensus 25 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 64 (319)
T 2chq_A 25 VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG 64 (319)
T ss_dssp HHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC
Confidence 3333444443332 3689999999999999888887643
No 238
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=85.07 E-value=4.5 Score=39.42 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=18.9
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHH
Q psy13010 60 INGILADEMGLGKTVQSIAFLCH 82 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~ 82 (573)
...+|.-++|+|||..|-++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46799999999999988777554
No 239
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=85.05 E-value=3.7 Score=42.02 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=38.1
Q ss_pred HhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHH
Q psy13010 56 YDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEME 110 (573)
Q Consensus 56 ~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~ 110 (573)
+..+.-.+|+-.+|+|||..++.++...... + .+++++.-..-..++...+.
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g--~~vl~fSlEms~~ql~~R~~ 245 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D--DVVNLHSLEMGKKENIKRLI 245 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-T--CEEEEECSSSCTTHHHHHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-C--CEEEEEECCCCHHHHHHHHH
Confidence 3444456999999999999999888877765 2 48899987655555555443
No 240
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=84.74 E-value=0.87 Score=43.96 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=24.4
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEE
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV 96 (573)
..+|.-++|+|||..|-++...+.... ++++.+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~---~~~~~~ 81 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRI 81 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCG---GGEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCC---cceEEe
Confidence 358889999999999988887775432 355544
No 241
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=84.47 E-value=0.15 Score=39.89 Aligned_cols=32 Identities=6% Similarity=-0.107 Sum_probs=25.6
Q ss_pred ccCCCCCCCCCCCCCccc---CCCCCCCCcccccc
Q psy13010 375 EGTILPEFPHVPRDPVIL---PQQPTYLPVCFFES 406 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~---~c~h~~~~~c~~~~ 406 (573)
....|++|.+....+.++ +|+|.||..|+...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~ 38 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQY 38 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHH
Confidence 356799999988777664 79999999996543
No 242
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.07 E-value=3.1 Score=46.51 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhC--CCCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 47 KGMNWLANLYDQ--GINGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 47 ~~v~~l~~~~~~--~~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
..+..+...+.. ..+.+|.-++|+|||..+-++...+..
T Consensus 177 ~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 177 EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 333334444432 335688889999999999888887755
No 243
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=83.87 E-value=2.3 Score=36.08 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=22.2
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
.+...+|.-+.|+|||..+-+++..+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4555678889999999998888877664
No 244
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.50 E-value=5.2 Score=39.15 Aligned_cols=41 Identities=24% Similarity=0.231 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHH-hCCC--CeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 45 QLKGMNWLANLY-DQGI--NGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 45 Q~~~v~~l~~~~-~~~~--~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
|..++..+.+.. ..+. ..+|.-+.|+|||..+-+++..+..
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 445555555555 3322 2588899999999988877775543
No 245
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=83.08 E-value=22 Score=31.60 Aligned_cols=35 Identities=14% Similarity=-0.010 Sum_probs=28.0
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEE
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV 96 (573)
.+..++....|-|||..|+++.......+ .+++|+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G---~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG---KNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEE
Confidence 44568888999999999999888877664 377777
No 246
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=82.54 E-value=4.3 Score=41.26 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=24.9
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
+++-..|.|||.++..++..+...+ .++++|+-
T Consensus 104 livG~~G~GKTTt~~kLA~~l~~~G---~kVllv~~ 136 (443)
T 3dm5_A 104 LMVGIQGSGKTTTVAKLARYFQKRG---YKVGVVCS 136 (443)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEEC
T ss_pred EEECcCCCCHHHHHHHHHHHHHHCC---CeEEEEeC
Confidence 6677799999999999888887653 35566653
No 247
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=81.88 E-value=8.2 Score=34.82 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=31.6
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEM 109 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el 109 (573)
.+.-.+|.-+.|+|||..+..++......+ ++++++.......+....+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~~~~~~~~~~~ 70 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTEESRDSIIRQA 70 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESSSCHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEcccCHHHHHHHH
Confidence 344457788999999998888776665442 4777776544444433333
No 248
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=81.58 E-value=5.7 Score=40.97 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=41.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC-cccHHHHHHHHHHHCCCceEEeec
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP-ASTLHNWQQEMERFVPDFKVVPYW 122 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P-~~l~~qW~~el~~~~~~~~v~~~~ 122 (573)
..+.--.|+|||+.+.+++... .+|+||||| .....+|..++..|+|+. |..|-
T Consensus 17 ~~l~g~~gs~ka~~~a~l~~~~------~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp 71 (483)
T 3hjh_A 17 RLLGELTGAACATLVAEIAERH------AGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLA 71 (483)
T ss_dssp EEEECCCTTHHHHHHHHHHHHS------SSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECC
T ss_pred EEEeCCCchHHHHHHHHHHHHh------CCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEe
Confidence 4667789999999877766431 259999999 677778999999998764 55443
No 249
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=81.35 E-value=3.9 Score=41.00 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=20.0
Q ss_pred CeEE--eCCCCCCHHHHHHHHHHHHhh
Q psy13010 61 NGIL--ADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 61 ~~ll--~de~G~GKT~~~ia~~~~~~~ 85 (573)
..+| .-+.|+|||..+-.++..+..
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 3477 789999999998888877654
No 250
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=81.23 E-value=0.29 Score=39.16 Aligned_cols=44 Identities=9% Similarity=-0.090 Sum_probs=33.1
Q ss_pred ccCCCCCCCCCCCCC------------------cccCCCCCCCCcccccc-cccCCchhhhhh
Q psy13010 375 EGTILPEFPHVPRDP------------------VILPQQPTYLPVCFFES-TQNMVSPALKKK 418 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~------------------~~~~c~h~~~~~c~~~~-~~~~~~~~~~~~ 418 (573)
++..|+||.+..+++ ..++|+|.|+..|+..- .....||.||..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 98 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 98 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSB
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCc
Confidence 567899999877655 33899999999998654 235678887765
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=80.97 E-value=3 Score=41.45 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=34.5
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQ 106 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~ 106 (573)
.+.-.+|+-++|+|||..++.++......+ +++++|.......+|.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g---~~vlyi~~E~s~~~~~ 118 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAG---GTCAFIDAEHALDPVY 118 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCC---CeEEEEECCCChhHHH
Confidence 344458889999999999998888776542 4788888776666663
No 252
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=80.96 E-value=15 Score=32.31 Aligned_cols=114 Identities=17% Similarity=0.226 Sum_probs=65.0
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC--cccHHHHHHHHHHHCCCceEEeecCChhHHHHHHHHhhhccc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP--ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNL 140 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P--~~l~~qW~~el~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 140 (573)
+.+-.-|.|||.+++.+...+...+ .++|+|=- ..-+..|...
T Consensus 6 v~s~kgG~GKTt~a~~la~~la~~g---~~vlliD~D~~~~~~~~~~~-------------------------------- 50 (206)
T 4dzz_A 6 FLNPKGGSGKTTAVINIATALSRSG---YNIAVVDTDPQMSLTNWSKA-------------------------------- 50 (206)
T ss_dssp ECCSSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHTT--------------------------------
T ss_pred EEeCCCCccHHHHHHHHHHHHHHCC---CeEEEEECCCCCCHHHHHhc--------------------------------
Confidence 3445679999999999988888753 36676643 3333344320
Q ss_pred ccCCCCceEEEeehHhHHhhHhhhhccCccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHHh
Q psy13010 141 HTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHF 220 (573)
Q Consensus 141 ~~~~~~~~i~i~sy~~~~~~~~~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~~ 220 (573)
....++++-...+.+......+.. .+++||+|=.-.+ + .....++. .+.. +++-.+|-... ..+..++..
T Consensus 51 --~~~~~~~~~~~~~~l~~~l~~l~~-~yD~viiD~~~~~-~--~~~~~~l~--~ad~-viiv~~~~~~~-~~~~~~~~~ 120 (206)
T 4dzz_A 51 --GKAAFDVFTAASEKDVYGIRKDLA-DYDFAIVDGAGSL-S--VITSAAVM--VSDL-VIIPVTPSPLD-FSAAGSVVT 120 (206)
T ss_dssp --SCCSSEEEECCSHHHHHTHHHHTT-TSSEEEEECCSSS-S--HHHHHHHH--HCSE-EEEEECSCTTT-HHHHHHHHH
T ss_pred --CCCCCcEEecCcHHHHHHHHHhcC-CCCEEEEECCCCC-C--HHHHHHHH--HCCE-EEEEecCCHHH-HHHHHHHHH
Confidence 012244555454555555555554 5899999987655 2 11222222 1333 44444565555 666666665
Q ss_pred h
Q psy13010 221 I 221 (573)
Q Consensus 221 L 221 (573)
+
T Consensus 121 l 121 (206)
T 4dzz_A 121 V 121 (206)
T ss_dssp H
T ss_pred H
Confidence 5
No 253
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=80.90 E-value=0.34 Score=39.46 Aligned_cols=47 Identities=9% Similarity=-0.082 Sum_probs=1.0
Q ss_pred ccCCCCCCCCCCCCCc------------------ccCCCCCCCCcccccc-cccCCchhhhhhhhH
Q psy13010 375 EGTILPEFPHVPRDPV------------------ILPQQPTYLPVCFFES-TQNMVSPALKKKIKI 421 (573)
Q Consensus 375 ~~~~~~~~~~~~~~~~------------------~~~c~h~~~~~c~~~~-~~~~~~~~~~~~~~~ 421 (573)
.+..|+||.+..+++. ..+|+|.|+..|+..- .....||.||..-.+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 4568999988766532 2589999999998764 235678888876443
No 254
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=80.69 E-value=2.2 Score=39.10 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=23.4
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhc
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETY 87 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~ 87 (573)
..++....|.|||..++.+...+...+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G 34 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG 34 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 358899999999999999999888764
No 255
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=80.18 E-value=3.7 Score=31.90 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=33.4
Q ss_pred EEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCC
Q psy13010 518 VLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGIL 564 (573)
Q Consensus 518 vlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~ 564 (573)
.+|||.-+..|.-|-+..+.+|+.++.+.+....+.|.+.++.|...
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHc
Confidence 46677777777777777777777777777777777777777777643
No 256
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=79.78 E-value=2.9 Score=40.47 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=27.0
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHh-hhcCCCCCEEEEc
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIA-ETYDVWGPFLIIS 97 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~-~~~~~~~~~LIV~ 97 (573)
+.+.+|.-++|+|||..+.++...+. ..+ .+++.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g---~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG---VSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC---CCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC---CcEEEEE
Confidence 45668899999999999999998887 542 2555443
No 257
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=79.77 E-value=2 Score=47.13 Aligned_cols=69 Identities=12% Similarity=0.035 Sum_probs=48.3
Q ss_pred hhccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhh-cCCCCCEEEEcCcc-cHHHHHHHHHHH
Q psy13010 38 RGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAET-YDVWGPFLIISPAS-TLHNWQQEMERF 112 (573)
Q Consensus 38 ~~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~-~~~~~~~LIV~P~~-l~~qW~~el~~~ 112 (573)
-..|.|.|+++|.. ..+..++....|+|||.+.+.-+..+... +-....+|+|+... .....++.+...
T Consensus 9 l~~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 9 LAHLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp HTTSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 34689999999852 24556777799999999988877777764 22345799999843 333455555444
No 258
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=79.18 E-value=2.5 Score=41.77 Aligned_cols=44 Identities=16% Similarity=0.062 Sum_probs=31.9
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNW 105 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW 105 (573)
+.-.+|.-++|+|||..++.++......+ ++++++.-.....++
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g---~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAG---GIAAFIDAEHALDPE 104 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECCCCcCHH
Confidence 33457888999999999988887776542 477888765544444
No 259
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=78.40 E-value=4.9 Score=43.11 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=34.5
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCc
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~ 99 (573)
..+...|..++..+..... +..+|...-|.|||..+-.++..+ . +..+|.+|.
T Consensus 174 ~~~T~dQ~~al~~~~~~~~--~~~vlta~RGRGKSa~lG~~~a~~-~-----~~~~vtAP~ 226 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMPP--GVAAVTAARGRGKSALAGQLISRI-A-----GRAIVTAPA 226 (671)
T ss_dssp SSCCHHHHHHHHHHTTCCS--EEEEEEECTTSSHHHHHHHHHHHS-S-----SCEEEECSS
T ss_pred CCCCHHHHHHHHHHHHhhh--CeEEEecCCCCCHHHHHHHHHHHH-H-----hCcEEECCC
Confidence 3678899999976644322 224777789999996554444433 2 245888884
No 260
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=78.06 E-value=1.9 Score=47.55 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=27.3
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQ 106 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~ 106 (573)
+.|.||.-.+|+|||..|-+++..+. .+++.|-...++..|.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg------~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETG------AFFFLINGPEIMSKLA 279 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTT------CEEEEEEHHHHHSSCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC------CeEEEEEhHHhhcccc
Confidence 34669999999999998876665432 2555554455444443
No 261
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=77.86 E-value=7.8 Score=30.67 Aligned_cols=65 Identities=12% Similarity=0.148 Sum_probs=44.7
Q ss_pred HHHHHHHHHhCCCeEEEEec------chhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEE
Q psy13010 504 LDDLLKRLKASGHRVLVYSQ------MTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVG 570 (573)
Q Consensus 504 l~~li~~~~~~~~KvlIFsq------~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~ 570 (573)
+.+.|+++.+ ..+|+||+. +..+=......|...|++|..++=....+.|+....... ..++.++
T Consensus 7 ~~~~v~~~i~-~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g-~~tvP~i 77 (109)
T 3ipz_A 7 LKDTLEKLVN-SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSN-WPTFPQL 77 (109)
T ss_dssp HHHHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT-CSSSCEE
T ss_pred HHHHHHHHHc-cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHC-CCCCCeE
Confidence 4455666543 458999998 789999999999999999988765555555555544333 3334433
No 262
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=77.84 E-value=13 Score=30.15 Aligned_cols=65 Identities=5% Similarity=-0.025 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCCeEEEEec------chhHHHHHHHHHHhCCCe---EEEecCCCCHHHHHHHHhCcCCCCCceEE
Q psy13010 504 LDDLLKRLKASGHRVLVYSQ------MTKMIDLLEEFMVYRKYR---FMRLDGSSKISERRDMFAVPGILTHQSVG 570 (573)
Q Consensus 504 l~~li~~~~~~~~KvlIFsq------~~~~l~~l~~~L~~~gi~---~~~i~G~~~~~~R~~~i~~F~~~~~~~v~ 570 (573)
+.+.|+++.+ ..+|+||+. +..+=..+.+.|...|++ |..++=....+.|+...... ...++.++
T Consensus 5 ~~~~v~~~i~-~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~s-g~~tvP~v 78 (121)
T 3gx8_A 5 IRKAIEDAIE-SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFS-EWPTIPQL 78 (121)
T ss_dssp HHHHHHHHHH-SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHH-TCCSSCEE
T ss_pred HHHHHHHHhc-cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHh-CCCCCCeE
Confidence 3445555543 458999998 788889999999999998 87777666666666554433 33444443
No 263
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=77.76 E-value=18 Score=36.65 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=23.9
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS 97 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~ 97 (573)
++.-..|.|||.++..++..+...+ +.+++|+
T Consensus 101 ~lvG~~GsGKTTt~~kLA~~l~~~G---~kVllv~ 132 (433)
T 3kl4_A 101 MLVGVQGSGKTTTAGKLAYFYKKRG---YKVGLVA 132 (433)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEe
Confidence 6667899999999988888776643 3556555
No 264
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=77.06 E-value=7.2 Score=35.73 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=34.4
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHH
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMER 111 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~ 111 (573)
.-.+|+-++|+|||..++-++.......+ ++++++.-..-..+....+..
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~--~~v~~~s~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcC--CCceeecccCCHHHHHHHHHH
Confidence 34599999999999999887765443322 478888765555555555543
No 265
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=76.35 E-value=5.8 Score=32.27 Aligned_cols=45 Identities=18% Similarity=0.078 Sum_probs=37.9
Q ss_pred EEEEecchhHH-------HHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcC
Q psy13010 518 VLVYSQMTKMI-------DLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPG 562 (573)
Q Consensus 518 vlIFsq~~~~l-------~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~ 562 (573)
|.|||....-. ..+...|..+||+|..+|=++..+.|++++++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 66777655433 5889999999999999999999999999999984
No 266
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=76.25 E-value=0.12 Score=43.16 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=39.5
Q ss_pred cccCCCCCCCCCCCCC-------cccCCCCCCCCcccccc-cccCCchhhhhhhhHhhhh
Q psy13010 374 EEGTILPEFPHVPRDP-------VILPQQPTYLPVCFFES-TQNMVSPALKKKIKIEDLI 425 (573)
Q Consensus 374 ~~~~~~~~~~~~~~~~-------~~~~c~h~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~ 425 (573)
.+...|++|.+...++ +.++|+|.||..|+..- .....+|.||.....+++.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 129 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcce
Confidence 4567899999876655 88999999999998654 3346788888877666543
No 267
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=75.77 E-value=10 Score=36.69 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHH
Q psy13010 42 KHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCH 82 (573)
Q Consensus 42 ~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~ 82 (573)
++.+++.+.. .+..+...+|.-+.|+|||..+-.++..
T Consensus 17 R~~el~~L~~---~l~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 17 REEESRKLEE---SLENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CHHHHHHHHH---HHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHH---HHhcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 4555555532 3333455688999999999877666543
No 268
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=75.71 E-value=9.8 Score=29.71 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=42.6
Q ss_pred HHHHHHHHHhCCCeEEEEe------cchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcC
Q psy13010 504 LDDLLKRLKASGHRVLVYS------QMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPG 562 (573)
Q Consensus 504 l~~li~~~~~~~~KvlIFs------q~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~ 562 (573)
+.+.+.++.+. .+|+||+ .|...=..+...|...|++|..++=......|+.....+.
T Consensus 6 ~~~~~~~~i~~-~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g 69 (105)
T 2yan_A 6 LEERLKVLTNK-ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSN 69 (105)
T ss_dssp HHHHHHHHHTS-SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcc-CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHC
Confidence 44455555543 4799998 5778888899999999999988887777666766665554
No 269
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=75.56 E-value=12 Score=38.78 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=19.0
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
.+.+|.-++|+|||..+-++....
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999887766543
No 270
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=75.19 E-value=10 Score=34.95 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=18.9
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
.|.+|.-++|+|||..+-++...+
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 346889999999999887766544
No 271
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=75.18 E-value=10 Score=30.11 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCCeEEEEe------cchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 504 LDDLLKRLKASGHRVLVYS------QMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 504 l~~li~~~~~~~~KvlIFs------q~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
+.+.|+++. ...+|+||+ .+..+=......|..+|++|..++=....+.|+.... +....++.+++
T Consensus 5 ~~~~v~~~i-~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~-~~g~~tvP~if 76 (111)
T 3zyw_A 5 LNLRLKKLT-HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA-YSSWPTYPQLY 76 (111)
T ss_dssp HHHHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH-HHTCCSSCEEE
T ss_pred HHHHHHHHH-hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH-HHCCCCCCEEE
Confidence 344455544 356899999 5788888999999999999988876666666665544 32334444443
No 272
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=74.06 E-value=3.7 Score=45.23 Aligned_cols=24 Identities=29% Similarity=0.216 Sum_probs=20.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
.+|.-++|+|||..|-++...+..
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l~~ 547 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESIFG 547 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 588999999999999888887754
No 273
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.92 E-value=0.44 Score=35.88 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=36.7
Q ss_pred hccccCCCCCCCCCC--CCCcccCCC-----CCCCCcccccccc---cCCchhhhhhhhHhh
Q psy13010 372 EREEGTILPEFPHVP--RDPVILPQQ-----PTYLPVCFFESTQ---NMVSPALKKKIKIED 423 (573)
Q Consensus 372 ~~~~~~~~~~~~~~~--~~~~~~~c~-----h~~~~~c~~~~~~---~~~~~~~~~~~~~~~ 423 (573)
...++..|.||.+.. +++.+++|. |.|+..|+..=.. ...||.|+....++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 344567899998643 567789996 9999999864422 247888777665544
No 274
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=73.82 E-value=5.2 Score=43.00 Aligned_cols=40 Identities=18% Similarity=0.122 Sum_probs=37.7
Q ss_pred CCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHH
Q psy13010 514 SGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553 (573)
Q Consensus 514 ~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~ 553 (573)
.+.++|||+......+.+.+.|...|+.+..++|+++.++
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e 434 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV 434 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH
Confidence 5789999999999999999999999999999999999775
No 275
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=73.65 E-value=8.3 Score=29.57 Aligned_cols=56 Identities=9% Similarity=-0.010 Sum_probs=41.7
Q ss_pred CeEEEEec-chhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 516 HRVLVYSQ-MTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 516 ~KvlIFsq-~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
.+|.|||. |...=....+.|..+||+|..++=....+.|+.+.+.-+-..++.+++
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~ 60 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVK 60 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEE
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEE
Confidence 36888874 456677788899999999999998888888888776544344455544
No 276
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=73.10 E-value=13 Score=29.93 Aligned_cols=61 Identities=11% Similarity=0.157 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEec------chhHHHHHHHHHHhCCC-eEEEecCCCCHHHHHHHHhCcCCCCCce
Q psy13010 502 SVLDDLLKRLKASGHRVLVYSQ------MTKMIDLLEEFMVYRKY-RFMRLDGSSKISERRDMFAVPGILTHQS 568 (573)
Q Consensus 502 ~~l~~li~~~~~~~~KvlIFsq------~~~~l~~l~~~L~~~gi-~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 568 (573)
+.+.++|++ .+|+||+- +..+-......|...|+ +|..++=....+-|+.+.. +...+++.
T Consensus 11 e~i~~~i~~-----~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~-~sg~~TvP 78 (118)
T 2wul_A 11 EQLDALVKK-----DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD-YSNWPTIP 78 (118)
T ss_dssp HHHHHHHHH-----SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHH-HHTCCSSC
T ss_pred HHHHHHHhc-----CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHH-hccCCCCC
Confidence 345555543 58999975 56778888889999998 5787776666666665554 44444443
No 277
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=72.26 E-value=18 Score=35.04 Aligned_cols=33 Identities=27% Similarity=0.180 Sum_probs=23.4
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
.+.-..|.|||.++..+...+...+ +.++++.-
T Consensus 109 ~ivG~~G~GKTT~~~~LA~~l~~~g---~kVllid~ 141 (320)
T 1zu4_A 109 MLVGVNGTGKTTSLAKMANYYAELG---YKVLIAAA 141 (320)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTT---CCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeC
Confidence 4455799999999887777776542 46677653
No 278
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=71.81 E-value=16 Score=44.42 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=37.3
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQ 106 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~ 106 (573)
.+...+|+-++|+|||..++.++..+... .+++++|.-.....||.
T Consensus 731 ~G~lilIaG~PG~GKTtLalqlA~~~a~~---g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECCCcHHHHH
Confidence 34445899999999999999988887754 24899999888888886
No 279
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=69.76 E-value=11 Score=37.27 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=30.2
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcc
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS 100 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~ 100 (573)
.+.-.+|+-++|+|||..++.++......+ +++++|....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g---~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCC
Confidence 344458899999999999998888776542 3778777643
No 280
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=69.31 E-value=18 Score=44.06 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=33.5
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHN 104 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~q 104 (573)
.+...+|.-++|+|||..|++++......+ +.++++.....+.+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G---~~v~Fi~~e~~~~~ 1469 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEHALDP 1469 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEECTTSCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEEcccccCH
Confidence 455669999999999999999988777653 36777877655433
No 281
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=68.52 E-value=7.8 Score=44.97 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=40.2
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVP 114 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~ 114 (573)
+|.-..|+|||.+++.-+..+...+....++|+|+|.+...+-+..+....+
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPD 56 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSS
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhhh
Confidence 4445799999999998888887765555799999999888886666655543
No 282
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=68.47 E-value=17 Score=34.96 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=23.0
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
.+.-..|.|||.++..++..+...+ +.++++.-
T Consensus 108 ~ivG~~GsGKTTl~~~LA~~l~~~g---~kV~lv~~ 140 (306)
T 1vma_A 108 MVVGVNGTGKTTSCGKLAKMFVDEG---KSVVLAAA 140 (306)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEE
T ss_pred EEEcCCCChHHHHHHHHHHHHHhcC---CEEEEEcc
Confidence 4555799999999877777766542 46666653
No 283
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=67.93 E-value=14 Score=30.53 Aligned_cols=65 Identities=12% Similarity=0.036 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCCeEEEEec------chhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEE
Q psy13010 504 LDDLLKRLKASGHRVLVYSQ------MTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVG 570 (573)
Q Consensus 504 l~~li~~~~~~~~KvlIFsq------~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~ 570 (573)
+.+.|+++.+. .+|+||+. +..+=..+...|...|++|..++=....+.|++....... +++.++
T Consensus 24 ~~~~v~~~i~~-~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~-~tvP~V 94 (135)
T 2wci_A 24 TIEKIQRQIAE-NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANW-PTFPQL 94 (135)
T ss_dssp HHHHHHHHHHH-CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTC-CSSCEE
T ss_pred HHHHHHHHhcc-CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCC-CCcCEE
Confidence 44445554433 37999987 7888889999999999999888776666666666554433 344443
No 284
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=67.91 E-value=16 Score=29.48 Aligned_cols=55 Identities=7% Similarity=0.074 Sum_probs=39.9
Q ss_pred CeEEEEec------chhHHHHHHHHHHhCCCe-EEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 516 HRVLVYSQ------MTKMIDLLEEFMVYRKYR-FMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 516 ~KvlIFsq------~~~~l~~l~~~L~~~gi~-~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
.+|+||+. +...=..+.+.|+..|++ |..++=....+.|+..... ....++.+++
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~-tg~~tvP~vf 81 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDY-SNWPTIPQVY 81 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHH-HTCCSSCEEE
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHH-hCCCCcCeEE
Confidence 48999998 788899999999999995 8888766666666655443 3334444443
No 285
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=67.42 E-value=11 Score=35.52 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=18.8
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
.+.+|.-++|+|||..+-++...+
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 346888999999999887766544
No 286
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=67.25 E-value=58 Score=31.14 Aligned_cols=37 Identities=5% Similarity=0.010 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 42 KHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 42 ~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
++.+++.+ .+ +.. ...+|.-+.|+|||..+-.++...
T Consensus 18 R~~el~~L---~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 18 REKEIEKL---KG-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp CHHHHHHH---HH-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHH---HH-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 44455544 34 443 456888899999999887777654
No 287
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=65.94 E-value=3.2 Score=40.37 Aligned_cols=32 Identities=22% Similarity=0.095 Sum_probs=23.9
Q ss_pred HHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 52 LANLYDQGINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 52 l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
+...+..+.+.+|.-++|+|||..+-++...+
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 33344446788999999999999887776654
No 288
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=65.39 E-value=14 Score=35.29 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=22.4
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
.+.-..|.|||.++..+...+....+ ..++++.-
T Consensus 109 ~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~ 142 (296)
T 2px0_A 109 VLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITT 142 (296)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEec
Confidence 44446899999998877777764222 25666653
No 289
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=65.16 E-value=10 Score=44.32 Aligned_cols=67 Identities=12% Similarity=0.167 Sum_probs=46.4
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcC---CCCCEEEEcCccc-HHHHHHHHHH
Q psy13010 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYD---VWGPFLIISPAST-LHNWQQEMER 111 (573)
Q Consensus 39 ~~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~---~~~~~LIV~P~~l-~~qW~~el~~ 111 (573)
..|.+-|..+|. ..+...++....|+|||.+.+.=+..+...+. ....+|+|++... ...-++.+..
T Consensus 9 ~~~t~eQ~~~i~------~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIV------STGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHH------CCSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 368999999985 23556788889999999998876666655432 3457999999433 3345555544
No 290
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=64.44 E-value=18 Score=35.50 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=29.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHH
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHN 104 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~q 104 (573)
.+|.-++|+|||..++.++..+...+ +++++|.......+
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~~g---g~VlyId~E~s~~~ 103 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQKMG---GVAAFIDAEHALDP 103 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEecccccch
Confidence 36777999999999988888776542 47788877554443
No 291
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=63.75 E-value=44 Score=30.05 Aligned_cols=41 Identities=17% Similarity=0.066 Sum_probs=25.6
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhc---CCCCCEEEEcCc
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETY---DVWGPFLIISPA 99 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~---~~~~~~LIV~P~ 99 (573)
+.-..|.-+.|+|||..+..++....... ...++++.+.-.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 44457788999999998887776432211 012466666543
No 292
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=63.16 E-value=35 Score=35.78 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=29.3
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHHhhhcCC-CCCEEEEcCcc
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHIAETYDV-WGPFLIISPAS 100 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~~~~~~~-~~~~LIV~P~~ 100 (573)
...+++-.+|+|||...-+++..+...... .-.+++|=|+.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 456999999999999988888877754322 12456666665
No 293
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=63.13 E-value=6.3 Score=35.46 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.2
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
+.++.-.+|+|||..|.+++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45889999999999999988876
No 294
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=63.09 E-value=7.1 Score=37.18 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=21.1
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
+.+.+|.-++|+|||..+-++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 5567999999999999988877765
No 295
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=62.63 E-value=23 Score=34.22 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=27.9
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhh---cCCCCCEEEEcCccc
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAET---YDVWGPFLIISPAST 101 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~---~~~~~~~LIV~P~~l 101 (573)
-.+|+-++|+|||..++.++...... ++..+++++|.-...
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 34888899999999998887764322 111257777776543
No 296
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=62.14 E-value=20 Score=27.16 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=40.0
Q ss_pred eEEEEecc-hhHH------HHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCC-CCCceEEE
Q psy13010 517 RVLVYSQM-TKMI------DLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGI-LTHQSVGL 571 (573)
Q Consensus 517 KvlIFsq~-~~~l------~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~-~~~~~v~L 571 (573)
+|+||+.. ..+- ..+...|..+|++|..+|=....+.|++....... ..++.+++
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~if 65 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIV 65 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEE
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEE
Confidence 68888753 4455 68888999999999999888888888877776653 23444443
No 297
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.97 E-value=9.8 Score=37.05 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhCCCC--eEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 45 QLKGMNWLANLYDQGIN--GILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 45 Q~~~v~~l~~~~~~~~~--~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
|..++..+......+.. .++.-+.|+|||..+-+++..+..
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 44455555555555543 688899999999999888887753
No 298
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=60.76 E-value=7.2 Score=38.69 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=20.3
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
....+|.-++|+|||..|-++...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3456899999999999987777655
No 299
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=60.47 E-value=9.5 Score=35.99 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=18.5
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCH 82 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~ 82 (573)
..|.+|.-++|+|||..+-++...
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 345688899999999887666554
No 300
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=59.03 E-value=13 Score=34.80 Aligned_cols=44 Identities=11% Similarity=-0.049 Sum_probs=28.6
Q ss_pred ccHHHHH----HHHHHHHHHHhCC---C-CeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 40 NLKHYQL----KGMNWLANLYDQG---I-NGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 40 ~L~~~Q~----~~v~~l~~~~~~~---~-~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
++..||- ....|+...+... . +.+|.-++|+|||+.+.+++...
T Consensus 77 ~~l~~qg~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 77 KILELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 4555554 2233455555433 2 35889999999999998887753
No 301
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=58.99 E-value=22 Score=33.89 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=23.6
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
.+.-..|.|||..+..++..+...+ +.++++.-
T Consensus 102 ~i~g~~G~GKTT~~~~la~~~~~~~---~~v~l~~~ 134 (295)
T 1ls1_A 102 FLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAA 134 (295)
T ss_dssp EEECCTTTTHHHHHHHHHHHHHHTT---CCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC---CeEEEecC
Confidence 3456899999999888777776542 46676654
No 302
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.76 E-value=33 Score=26.99 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=36.7
Q ss_pred CeEEEEec-chhHHH------HHHHHHHhCCCeEEEecCCCCHHHHHHHHhCc
Q psy13010 516 HRVLVYSQ-MTKMID------LLEEFMVYRKYRFMRLDGSSKISERRDMFAVP 561 (573)
Q Consensus 516 ~KvlIFsq-~~~~l~------~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F 561 (573)
.+|+||+. +..+=. .+...|..+|++|..+|=....+.|+++.+.+
T Consensus 8 m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 8 MVIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp CCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred cEEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 47888874 334444 68889999999999999888888898888887
No 303
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=57.24 E-value=31 Score=33.30 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=29.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHH
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLH 103 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~ 103 (573)
.+|+-++|+|||..++-++......+ ..+.++.|....-+.
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchhh
Confidence 47888999999999998888777642 124678777754433
No 304
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=57.19 E-value=26 Score=34.88 Aligned_cols=69 Identities=13% Similarity=0.006 Sum_probs=54.4
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHh---CCCeEEEecCCCCHHHHHHHHhCcCCC
Q psy13010 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVY---RKYRFMRLDGSSKISERRDMFAVPGIL 564 (573)
Q Consensus 496 ~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~---~gi~~~~i~G~~~~~~R~~~i~~F~~~ 564 (573)
..|||..+..-.+......+.++||.+.......-+.+.+.. .|+.+..++|+++.++|......+..+
T Consensus 45 TGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~ 116 (414)
T 3oiy_A 45 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED 116 (414)
T ss_dssp SSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcC
Confidence 458898855555555556788999999998888877777877 689999999999998887777766554
No 305
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=56.50 E-value=21 Score=28.87 Aligned_cols=52 Identities=15% Similarity=0.120 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHHHhCC-CeEEEEec-chhHHHHHHHHHHhCCCeEEEecCCCCH
Q psy13010 499 GKLSVLDDLLKRLKASG-HRVLVYSQ-MTKMIDLLEEFMVYRKYRFMRLDGSSKI 551 (573)
Q Consensus 499 ~Kl~~l~~li~~~~~~~-~KvlIFsq-~~~~l~~l~~~L~~~gi~~~~i~G~~~~ 551 (573)
+++..+.+.+..+ ..+ .+|||||. .-.........|...|+.+..++|++..
T Consensus 73 ~~~~~~~~~~~~~-~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 73 YKLKDIYLQAAEL-ALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp GGHHHHHHHHHHH-HTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred ccHHHHHHHHHHh-ccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 3555555555554 455 89999995 5556678888999999998899998763
No 306
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=56.23 E-value=41 Score=26.19 Aligned_cols=48 Identities=8% Similarity=0.104 Sum_probs=37.4
Q ss_pred CCeEEEEec------chhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcC
Q psy13010 515 GHRVLVYSQ------MTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPG 562 (573)
Q Consensus 515 ~~KvlIFsq------~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~ 562 (573)
..+|+||+. +...=..+...|...|++|..++=....+.|++......
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g 67 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSN 67 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHS
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhC
Confidence 457999987 666777888899999999999988877766766655443
No 307
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=56.03 E-value=16 Score=33.20 Aligned_cols=49 Identities=22% Similarity=0.169 Sum_probs=34.2
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEME 110 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~ 110 (573)
+.-.+|.-++|+|||..++.++......+ ++++++.-.....+..+.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~---~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMG---EPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTT---CCEEEEESSSCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEccCCHHHHHHHHH
Confidence 44457888999999999888877666542 47788877655555555444
No 308
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=55.79 E-value=14 Score=41.29 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=24.4
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEE
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV 96 (573)
..+|.-++|+|||..|-++...+.... ++++.|
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~~---~~~i~i 622 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRI 622 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSG---GGEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCC---CcEEEE
Confidence 358899999999999988888776532 354444
No 309
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=55.61 E-value=3 Score=40.40 Aligned_cols=49 Identities=16% Similarity=-0.074 Sum_probs=34.5
Q ss_pred ccccCCCCCCCCCCCC-Cc-------ccCCCCCCCCccccccc------------ccCCchhhhhhhhH
Q psy13010 373 REEGTILPEFPHVPRD-PV-------ILPQQPTYLPVCFFEST------------QNMVSPALKKKIKI 421 (573)
Q Consensus 373 ~~~~~~~~~~~~~~~~-~~-------~~~c~h~~~~~c~~~~~------------~~~~~~~~~~~~~~ 421 (573)
++...+|+||.....+ .. ...|+|.|+..|+.+-. ..+.||.|+..++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3456899999975544 22 25899999999986422 13679988887653
No 310
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=55.46 E-value=14 Score=33.19 Aligned_cols=33 Identities=24% Similarity=0.172 Sum_probs=26.5
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
+.+-..|.|||.+++.++..+...+ .++|++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G---~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAG---YRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT---CCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEcc
Confidence 5566789999999999999888763 37788766
No 311
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=54.41 E-value=7 Score=40.52 Aligned_cols=32 Identities=13% Similarity=0.018 Sum_probs=23.4
Q ss_pred HHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 52 LANLYDQGINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 52 l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
+...+..+...+|..++|+|||..|-++...+
T Consensus 34 l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 34 CLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 33444456778999999999999886665544
No 312
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=52.79 E-value=26 Score=41.94 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=32.9
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHN 104 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~q 104 (573)
.+...+|+-++|+|||..++.++......+ ++++++.-.....+
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g---~~VlyiS~Ees~~q 774 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEHALDP 774 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEECTTSCCCH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcC---CCeEEEeccchHHH
Confidence 344458999999999999999988877542 47888876555544
No 313
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=52.52 E-value=44 Score=24.22 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHh--CCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCC
Q psy13010 502 SVLDDLLKRLKA--SGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILT 565 (573)
Q Consensus 502 ~~l~~li~~~~~--~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~ 565 (573)
..+..++.+.++ ++-||+|......-+|--.+.-+...|++.. ..-+++++-...+..|....
T Consensus 36 delkkyleefrkesqnikvlilvsndeeldkakelaqkmeidvrt-rkvtspdeakrwikefseeg 100 (110)
T 2kpo_A 36 DELKKYLEEFRKESQNIKVLILVSNDEELDKAKELAQKMEIDVRT-RKVTSPDEAKRWIKEFSEEG 100 (110)
T ss_dssp HHHHHHHHHHTSSTTSEEEEEEESSHHHHHHHHHHHHHTTCCEEE-EECSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccCeEEEEEEcChHHHHHHHHHHHhhceeeee-eecCChHHHHHHHHHHhhcc
Confidence 367778888776 3779999999999999999988888888543 44578888888999998554
No 314
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=52.31 E-value=47 Score=32.22 Aligned_cols=39 Identities=18% Similarity=0.051 Sum_probs=27.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhc---CCCCCEEEEcCcc
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETY---DVWGPFLIISPAS 100 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~---~~~~~~LIV~P~~ 100 (573)
.+|+-++|+|||..++.++....... +..+++++|.-..
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 48899999999999888777643211 1235778887654
No 315
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=51.73 E-value=7.3 Score=43.17 Aligned_cols=25 Identities=24% Similarity=0.130 Sum_probs=18.9
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCH 82 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~ 82 (573)
.+.+.+|.-++|+|||..+-++...
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3445688999999999887666543
No 316
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=51.42 E-value=25 Score=33.84 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHHHHHhh
Q psy13010 68 MGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 68 ~G~GKT~~~ia~~~~~~~ 85 (573)
=|+|||=++++++..+..
T Consensus 47 GGTGKTP~vi~L~~~L~~ 64 (315)
T 4ehx_A 47 GGSGKTSFVMYLADLLKD 64 (315)
T ss_dssp SCCSHHHHHHHHHHHTTT
T ss_pred CCCChHHHHHHHHHHHhh
Confidence 489999999999998753
No 317
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=50.46 E-value=18 Score=32.95 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=25.5
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
|-+-++|.|||.++++++..+...+. ++...-|
T Consensus 9 Itgt~t~vGKT~vt~~L~~~l~~~G~---~V~~~KP 41 (228)
T 3of5_A 9 IIGTDTEVGKTYISTKLIEVCEHQNI---KSLCLKP 41 (228)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTTC---CEEEECS
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHCCC---eeEEecc
Confidence 56778999999999999999988753 4444444
No 318
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=50.17 E-value=19 Score=33.21 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=26.1
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
|.+-++|.|||..+++++..+...+. ++...-|
T Consensus 26 ItgT~t~vGKT~vs~gL~~~L~~~G~---~V~~fKP 58 (242)
T 3qxc_A 26 ISATNTNAGKTTCARLLAQYCNACGV---KTILLKP 58 (242)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTC---CEEEECC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhCCC---ceEEEee
Confidence 67888999999999999999988743 4445544
No 319
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=49.97 E-value=32 Score=39.73 Aligned_cols=66 Identities=14% Similarity=0.026 Sum_probs=54.0
Q ss_pred HHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHhCcCCCCCceEEE
Q psy13010 504 LDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYR--KYRFMRLDGSSKISERRDMFAVPGILTHQSVGL 571 (573)
Q Consensus 504 l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~--gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 571 (573)
...++.. ...|.+++||++....+..+.+.|+.. ++.+..++|+++.++|++++++|+++. ..|++
T Consensus 802 ~~~il~~-l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~-~~VLV 869 (1151)
T 2eyq_A 802 REAILRE-ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR-FNVLV 869 (1151)
T ss_dssp HHHHHHH-HTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTS-CCEEE
T ss_pred HHHHHHH-HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCC-CcEEE
Confidence 3334433 456889999999999999999999987 899999999999999999999998654 45543
No 320
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=49.70 E-value=51 Score=25.24 Aligned_cols=56 Identities=9% Similarity=-0.008 Sum_probs=40.2
Q ss_pred CCeEEEEe-cchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcCCCCCceEE
Q psy13010 515 GHRVLVYS-QMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPGILTHQSVG 570 (573)
Q Consensus 515 ~~KvlIFs-q~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~ 570 (573)
..+|+||+ .+...=..+...|...|++|..++=....+.+++..+.......+.++
T Consensus 15 ~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i 71 (99)
T 3qmx_A 15 SAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQI 71 (99)
T ss_dssp CCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHTTTCCCSCEE
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE
Confidence 56888887 567788888889999999999988887777776665543133344444
No 321
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=49.40 E-value=47 Score=31.78 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=19.0
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
-.+|+-++|+|||..++.++...
T Consensus 100 i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 34888999999999998887753
No 322
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=48.34 E-value=14 Score=29.00 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=32.9
Q ss_pred hCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCC
Q psy13010 513 ASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550 (573)
Q Consensus 513 ~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~ 550 (573)
..+.+|||||..-.........|...|+.+..++|++.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 45789999998877778888999999999899999876
No 323
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=47.66 E-value=12 Score=38.04 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=20.3
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
..+.+|.-.+|+|||..|-++...+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 3567899999999999887776655
No 324
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=47.00 E-value=11 Score=35.17 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=20.5
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
..+.+|.-++|+|||..|-++...+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4557889999999999998877754
No 325
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=46.42 E-value=87 Score=31.46 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=24.2
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
.+.-..|.|||.++..+...+...+ +.++++.-
T Consensus 102 ~i~G~~GsGKTT~~~~LA~~l~~~g---~~Vllvd~ 134 (425)
T 2ffh_A 102 FLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAA 134 (425)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC---CeEEEeec
Confidence 4556899999999888887776542 46676654
No 326
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=46.11 E-value=61 Score=23.50 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=39.3
Q ss_pred EEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcC-CCCCceEEEeC
Q psy13010 518 VLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPG-ILTHQSVGLLV 573 (573)
Q Consensus 518 vlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~-~~~~~~v~Ll~ 573 (573)
|+|.|+-...+.--..+-...+.....+ ...++-.+.++.|+ ...+++|++||
T Consensus 5 vliisndkklieearkmaekanlelrtv---ktedelkkyleefrkesqnikvlilv 58 (110)
T 2kpo_A 5 VLIISNDKKLIEEARKMAEKANLELRTV---KTEDELKKYLEEFRKESQNIKVLILV 58 (110)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTCEEEEC---CSHHHHHHHHHHHTSSTTSEEEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHhcCceeeee---ccHHHHHHHHHHHHhhccCeEEEEEE
Confidence 6788887777776666667777776665 45677788899998 55778888774
No 327
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=45.83 E-value=21 Score=32.22 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=25.6
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
+.+-.-|.|||.+++.+...+...+ .++|+|=.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g---~~VlliD~ 39 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRG---RKVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT---CCEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcC---CeEEEEeC
Confidence 5566789999999999999887753 36777754
No 328
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=45.10 E-value=90 Score=32.15 Aligned_cols=33 Identities=15% Similarity=0.085 Sum_probs=24.5
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
++.-..|.|||.++..++..+...+ .++++|..
T Consensus 105 ~ivG~~GvGKTTl~~kLA~~l~~~G---~kVllVd~ 137 (504)
T 2j37_W 105 MFVGLQGSGKTTTCSKLAYYYQRKG---WKTCLICA 137 (504)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEec
Confidence 4555689999999988888877642 35677765
No 329
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=44.89 E-value=17 Score=37.32 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=26.4
Q ss_pred HHHHHHHHh--CCCCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 49 MNWLANLYD--QGINGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 49 v~~l~~~~~--~~~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
+..+...+. ...+.+|.-++|+|||..+-++...+..
T Consensus 189 i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 333444443 3445689999999999999888887755
No 330
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=44.78 E-value=24 Score=27.40 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=32.5
Q ss_pred HhCCCeEEEEecchhHHHHHHHHHHhCCCe-EEEecCCCC
Q psy13010 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYR-FMRLDGSSK 550 (573)
Q Consensus 512 ~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~-~~~i~G~~~ 550 (573)
+..+..|||||..-.........|...|+. +..++|++.
T Consensus 49 l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 49 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp SCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 356789999999877788888999999996 777899865
No 331
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=44.52 E-value=28 Score=34.05 Aligned_cols=33 Identities=30% Similarity=0.245 Sum_probs=26.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS 97 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~ 97 (573)
.+..---|.|||.++.++...+...+ +++|+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G---~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKG---LKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSS---CCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCC---CeEEEEe
Confidence 37778899999999999988888763 3677765
No 332
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=43.19 E-value=35 Score=36.51 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=46.5
Q ss_pred ccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEec
Q psy13010 497 DAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLD 546 (573)
Q Consensus 497 ~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~ 546 (573)
.+||...+.++|..+..+|.+|||-+..-..+|-|.+.|...+..++|+-
T Consensus 215 GTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG 264 (646)
T 4b3f_X 215 GTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLG 264 (646)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEec
Confidence 37899999999999999999999999999999999999999999999984
No 333
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=43.10 E-value=24 Score=32.33 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=24.8
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS 97 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~ 97 (573)
+.+-.-|.|||.+++.+...+...+ .++|+|=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g---~~VlliD 38 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKG---KKTVVID 38 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCC---CcEEEEE
Confidence 5566789999999999999888753 3667764
No 334
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=43.04 E-value=18 Score=28.18 Aligned_cols=38 Identities=5% Similarity=0.025 Sum_probs=31.6
Q ss_pred hCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCC
Q psy13010 513 ASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550 (573)
Q Consensus 513 ~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~ 550 (573)
..+++++|||..-.-.......|...|++.+.+.|++.
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 35789999998776677788899999999988998764
No 335
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=42.79 E-value=26 Score=32.29 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=25.3
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS 97 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~ 97 (573)
+.+-.-|.|||.+++.+...+...+ .++|+|=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g---~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLG---HDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCC---CcEEEEE
Confidence 5567889999999999998888753 3677775
No 336
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=42.63 E-value=25 Score=32.57 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=25.1
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS 97 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~ 97 (573)
+.+-.-|.|||.+++.+...+...+ .++|+|=
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G---~~VlliD 54 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQG---KKVGILD 54 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCC---CeEEEEe
Confidence 5567789999999999988888753 3677764
No 337
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=42.60 E-value=56 Score=32.31 Aligned_cols=50 Identities=20% Similarity=0.377 Sum_probs=28.1
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHH-HHHHH
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHN-WQQEM 109 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~q-W~~el 109 (573)
......++..++|+|||..|- .+...... ..+|++.|--..+-.+ ...|+
T Consensus 158 ~~~~~vli~Ge~GtGK~~lAr-~ih~~s~r--~~~~fv~v~~~~~~~~~~~~el 208 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVAR-LIHKLSDR--SKEPFVALNVASIPRDIFEAEL 208 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHHH-HHHHHSTT--TTSCEEEEETTTSCHHHHHHHH
T ss_pred CCCCCeEEecCCCcCHHHHHH-HHHHhcCC--CCCCeEEEecCCCCHHHHHHHh
Confidence 345567999999999998663 33333222 2356555543333332 34444
No 338
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=41.76 E-value=45 Score=24.44 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=32.3
Q ss_pred HHHHHHHH-HhCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCC
Q psy13010 504 LDDLLKRL-KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550 (573)
Q Consensus 504 l~~li~~~-~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~ 550 (573)
+.+.+.++ ...+.++||||..-.........|...|++-+.+-|+..
T Consensus 29 l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~lGG~~ 76 (85)
T 2jtq_A 29 VKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLK 76 (85)
T ss_dssp HHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEEEETT
T ss_pred HHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEeccCHH
Confidence 33444444 245789999999877777888899999997333336643
No 339
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=41.38 E-value=74 Score=31.21 Aligned_cols=23 Identities=17% Similarity=0.266 Sum_probs=17.7
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHH
Q psy13010 57 DQGINGILADEMGLGKTVQSIAF 79 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~ 79 (573)
......++.-+.|+||+..|-++
T Consensus 150 ~~~~~vli~GesGtGKe~lAr~i 172 (368)
T 3dzd_A 150 KSKAPVLITGESGTGKEIVARLI 172 (368)
T ss_dssp TSCSCEEEECCTTSSHHHHHHHH
T ss_pred ccchhheEEeCCCchHHHHHHHH
Confidence 44566789999999999877443
No 340
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=40.81 E-value=21 Score=33.17 Aligned_cols=29 Identities=10% Similarity=0.248 Sum_probs=22.0
Q ss_pred eCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEE
Q psy13010 65 ADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96 (573)
Q Consensus 65 ~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV 96 (573)
+-.-|.|||.+++.+...+...+ .++|+|
T Consensus 7 s~KGGvGKTT~a~nLA~~la~~G---~~Vlli 35 (269)
T 1cp2_A 7 YGKGGIGKSTTTQNLTSGLHAMG---KTIMVV 35 (269)
T ss_dssp EECTTSSHHHHHHHHHHHHHTTT---CCEEEE
T ss_pred ecCCCCcHHHHHHHHHHHHHHCC---CcEEEE
Confidence 34679999999999988887653 366665
No 341
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=40.81 E-value=6.8 Score=30.49 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=25.3
Q ss_pred ccCCCCCCCCC-CCCCcc--cCCCCCCCCccccc
Q psy13010 375 EGTILPEFPHV-PRDPVI--LPQQPTYLPVCFFE 405 (573)
Q Consensus 375 ~~~~~~~~~~~-~~~~~~--~~c~h~~~~~c~~~ 405 (573)
++..|++|.+. ...++. +.|+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 34679999964 667777 99999999999775
No 342
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=40.51 E-value=26 Score=32.51 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.8
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYD 88 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~ 88 (573)
|-+-++|.|||.++++++..+...+.
T Consensus 31 Itgt~t~vGKT~vt~gL~~~l~~~G~ 56 (251)
T 3fgn_A 31 VTGTGTGVGKTVVCAALASAARQAGI 56 (251)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCC
Confidence 67788999999999999999988753
No 343
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=40.45 E-value=22 Score=36.76 Aligned_cols=50 Identities=4% Similarity=-0.031 Sum_probs=36.4
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEM 109 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el 109 (573)
.+.-.+|+-.+|+|||..++.++.......+ .+++++.-..-..+....+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g--~~vl~~s~E~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMG--KKVGLAMLEESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSC--CCEEEEESSSCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcC--CcEEEEeccCCHHHHHHHH
Confidence 3444589999999999999988887765422 4889888765555655544
No 344
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=40.34 E-value=59 Score=37.31 Aligned_cols=69 Identities=13% Similarity=0.006 Sum_probs=57.7
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHHh---CCCeEEEecCCCCHHHHHHHHhCcCCC
Q psy13010 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVY---RKYRFMRLDGSSKISERRDMFAVPGIL 564 (573)
Q Consensus 496 ~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~---~gi~~~~i~G~~~~~~R~~~i~~F~~~ 564 (573)
..|||..+..-.+......+.++||.+.......-+.+.|.. .|+.+..++|+++..+|...+..+.++
T Consensus 102 TGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g 173 (1104)
T 4ddu_A 102 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED 173 (1104)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTS
T ss_pred CCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCC
Confidence 458999877666666667788999999999988888888887 688999999999998888888877765
No 345
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=40.29 E-value=30 Score=32.94 Aligned_cols=32 Identities=28% Similarity=0.256 Sum_probs=24.4
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS 97 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~ 97 (573)
+.+-..|.|||.+++.+...+...+ +++|+|=
T Consensus 109 vts~kgG~GKTtva~nLA~~lA~~G---~rVLLID 140 (299)
T 3cio_A 109 ITGATPDSGKTFVSSTLAAVIAQSD---QKVLFID 140 (299)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EECCCCCCChHHHHHHHHHHHHhCC---CcEEEEE
Confidence 4455689999999999988887653 3677773
No 346
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=40.24 E-value=21 Score=34.33 Aligned_cols=49 Identities=12% Similarity=0.003 Sum_probs=24.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEE
Q psy13010 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV 96 (573)
.+.-||-.... ....+-.-++--=|.|||.+++.+...+...+. ++|+|
T Consensus 34 ~~~~~~~~~~~-----i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~Gk---kVllI 82 (314)
T 3fwy_A 34 SVQVHLDEADK-----ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK---RVLQI 82 (314)
T ss_dssp ------------------CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEE
T ss_pred ccccccCcccC-----CCCceEEEEECCCccCHHHHHHHHHHHHHHCCC---eEEEE
Confidence 55666666542 111111123346689999999999998888743 56666
No 347
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=40.00 E-value=32 Score=26.28 Aligned_cols=38 Identities=3% Similarity=0.089 Sum_probs=32.5
Q ss_pred hCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCC
Q psy13010 513 ASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550 (573)
Q Consensus 513 ~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~ 550 (573)
..++++||||..-.........|...|+.+..++|++.
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 35789999999877788889999999998888999764
No 348
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=39.42 E-value=33 Score=30.50 Aligned_cols=41 Identities=22% Similarity=0.389 Sum_probs=28.6
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc--CcccHHHHHH
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS--PASTLHNWQQ 107 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~--P~~l~~qW~~ 107 (573)
+.+---|.|||.+++.+...+...+ ++|+|= |..-+..|..
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g----~VlliD~D~q~~~~~~~~ 47 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG----ETLLIDGDPNRSATGWGK 47 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS----CEEEEEECTTCHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC----CEEEEECCCCCCHHHHhc
Confidence 4566789999999999988887652 566642 5544555654
No 349
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=39.17 E-value=1.2e+02 Score=28.71 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=23.5
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
.+.-..|.|||.++..+...+...+ ++++++.-
T Consensus 102 ~i~G~~G~GKTT~~~~la~~~~~~g---~~v~l~~~ 134 (297)
T 1j8m_F 102 MLVGVQGTGKTTTAGKLAYFYKKKG---FKVGLVGA 134 (297)
T ss_dssp EEECSSCSSTTHHHHHHHHHHHHTT---CCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEec
Confidence 4456899999998887777776542 46666654
No 350
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=39.03 E-value=31 Score=32.27 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=23.4
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEE
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV 96 (573)
+..-..|.|||.+++.+...+...+ +++|+|
T Consensus 87 vts~kgG~GKTt~a~nLA~~lA~~G---~rVLLI 117 (271)
T 3bfv_A 87 ITSEAPGAGKSTIAANLAVAYAQAG---YKTLIV 117 (271)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCC---CeEEEE
Confidence 3345689999999999988888653 366766
No 351
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=38.79 E-value=31 Score=31.24 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=24.5
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS 97 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~ 97 (573)
+.+-.-|.|||.+++.+...+....+ .++|+|=
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~~g--~~VlliD 41 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQEPD--IHVLAVD 41 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTSTT--CCEEEEE
T ss_pred EECCCCCcchHHHHHHHHHHHHhCcC--CCEEEEE
Confidence 55667899999999999888877512 3666663
No 352
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=38.63 E-value=15 Score=33.59 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=23.0
Q ss_pred eCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEE
Q psy13010 65 ADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96 (573)
Q Consensus 65 ~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV 96 (573)
.---|.|||.+++.+...+...+ .++|+|
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~g---~~Vlli 34 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASDY---DKIYAV 34 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTTC---SCEEEE
T ss_pred ecCCCCCHHHHHHHHHHHHHHCC---CeEEEE
Confidence 55789999999999998888763 466766
No 353
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=38.52 E-value=23 Score=33.69 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=23.8
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEE
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV 96 (573)
.++---|.|||.+++.+...+...+ .++|+|
T Consensus 45 ~v~~KGGvGKTT~a~nLA~~La~~G---~~Vlli 75 (307)
T 3end_A 45 AVYGKGGIGKSTTSSNLSAAFSILG---KRVLQI 75 (307)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred EEECCCCccHHHHHHHHHHHHHHCC---CeEEEE
Confidence 3346889999999999988888763 366666
No 354
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=38.39 E-value=33 Score=26.34 Aligned_cols=38 Identities=5% Similarity=0.025 Sum_probs=32.5
Q ss_pred hCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCC
Q psy13010 513 ASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550 (573)
Q Consensus 513 ~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~ 550 (573)
..+.+|||||..-.........|...|+.+..++|++.
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 35789999999877788889999999999888998764
No 355
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=38.11 E-value=36 Score=32.43 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=20.4
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
....+|.-++|+|||..|-++...+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 3567999999999999987777655
No 356
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=38.06 E-value=35 Score=32.28 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=24.6
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEE
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV 96 (573)
+..-..|.|||.+++.+...+...+ +++|+|
T Consensus 97 vts~kgG~GKTtva~nLA~~lA~~G---~rVLLI 127 (286)
T 3la6_A 97 MTGVSPSIGMTFVCANLAAVISQTN---KRVLLI 127 (286)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHTTT---CCEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCC---CCEEEE
Confidence 5566789999999999988888653 367777
No 357
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=37.65 E-value=1.1e+02 Score=22.22 Aligned_cols=48 Identities=13% Similarity=0.046 Sum_probs=32.8
Q ss_pred eEEEEec-----chhHHHHHHHHHHhCCCeEEEecCC-----CCHHHHHHHHhCcCCC
Q psy13010 517 RVLVYSQ-----MTKMIDLLEEFMVYRKYRFMRLDGS-----SKISERRDMFAVPGIL 564 (573)
Q Consensus 517 KvlIFsq-----~~~~l~~l~~~L~~~gi~~~~i~G~-----~~~~~R~~~i~~F~~~ 564 (573)
+|+||+. +..+=......|+.+|++|..++=. ...+.|++..+.....
T Consensus 1 ~v~iY~~~~~~~~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~ 58 (87)
T 1aba_A 1 MFKVYGYDSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRD 58 (87)
T ss_dssp CEEEEECCTTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCS
T ss_pred CEEEEEeCCCCCcCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCC
Confidence 4667764 4456777888899999998887655 5556666666555443
No 358
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=37.56 E-value=25 Score=33.12 Aligned_cols=29 Identities=21% Similarity=0.364 Sum_probs=22.2
Q ss_pred eCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEE
Q psy13010 65 ADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96 (573)
Q Consensus 65 ~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV 96 (573)
+-.-|.|||.+++.+...+...+ .++|+|
T Consensus 8 s~KGGvGKTT~a~nLA~~La~~G---~rVlli 36 (289)
T 2afh_E 8 YGKGGIGKSTTTQNLVAALAEMG---KKVMIV 36 (289)
T ss_dssp EECTTSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred eCCCcCcHHHHHHHHHHHHHHCC---CeEEEE
Confidence 34679999999999998888653 366665
No 359
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=37.42 E-value=55 Score=30.72 Aligned_cols=28 Identities=25% Similarity=0.205 Sum_probs=21.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCEEEE
Q psy13010 66 DEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96 (573)
Q Consensus 66 de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV 96 (573)
---|.|||.+++.+...+...+ .++|+|
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G---~rVlli 71 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLN---LKVLMI 71 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred CCCCchHHHHHHHHHHHHHhCC---CeEEEE
Confidence 4789999999999888887653 366664
No 360
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=36.90 E-value=31 Score=33.23 Aligned_cols=33 Identities=30% Similarity=0.318 Sum_probs=26.5
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
+..-.-|.|||.++.++...+...+ +++|+|-.
T Consensus 18 v~sgKGGvGKTTvA~~LA~~lA~~G---~rVLlvD~ 50 (324)
T 3zq6_A 18 FIGGKGGVGKTTISAATALWMARSG---KKTLVIST 50 (324)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEEC
T ss_pred EEeCCCCchHHHHHHHHHHHHHHCC---CcEEEEeC
Confidence 6677899999999999998888763 36777765
No 361
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=36.85 E-value=45 Score=25.83 Aligned_cols=44 Identities=11% Similarity=0.241 Sum_probs=34.5
Q ss_pred HHHHHHHhCCCeEEEEecchhHHHHHHHHHHhCCCe-EEEecCCCC
Q psy13010 506 DLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYR-FMRLDGSSK 550 (573)
Q Consensus 506 ~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~gi~-~~~i~G~~~ 550 (573)
+.+.. +..+++|||||..-.........|...|++ +..++|++.
T Consensus 50 ~~~~~-l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 50 AFMRD-NDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHH-SCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHh-cCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 33444 356789999999877788888999999996 778899865
No 362
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=36.40 E-value=50 Score=27.39 Aligned_cols=38 Identities=5% Similarity=-0.137 Sum_probs=29.9
Q ss_pred hCCCeEEEEecchhHHHHHHHHHHhCCCe-EEEecCCCC
Q psy13010 513 ASGHRVLVYSQMTKMIDLLEEFMVYRKYR-FMRLDGSSK 550 (573)
Q Consensus 513 ~~~~KvlIFsq~~~~l~~l~~~L~~~gi~-~~~i~G~~~ 550 (573)
..+.+|||||..-.........|...|+. +..++|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 45789999999876677888899999995 888999874
No 363
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=35.53 E-value=69 Score=35.10 Aligned_cols=69 Identities=13% Similarity=-0.022 Sum_probs=50.8
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHH----HHHHhCCCeEEEecCCCCHHHHHHHHhCcCCC
Q psy13010 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLE----EFMVYRKYRFMRLDGSSKISERRDMFAVPGIL 564 (573)
Q Consensus 496 ~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~----~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~ 564 (573)
..|||..+..-.+......|.+++|.+.......-+. ..+...|+.+..++|+++.++|...+....++
T Consensus 398 TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g 470 (780)
T 1gm5_A 398 VGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNG 470 (780)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcC
Confidence 3589987655555555566889999998766554444 44444589999999999999999888877654
No 364
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=35.31 E-value=75 Score=35.27 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=35.7
Q ss_pred ccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHH
Q psy13010 497 DAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMV 536 (573)
Q Consensus 497 ~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~ 536 (573)
...|..++.+.|.+..+.|.-|||+|.+...-..|...|.
T Consensus 425 ~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 425 EKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHh
Confidence 3568899999998888889999999999999999999998
No 365
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=34.30 E-value=1.3e+02 Score=21.80 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=48.1
Q ss_pred cccccccHHHHHHHHHHHHhCCCeEEEEecchhHHH--HHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcC
Q psy13010 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMID--LLEEFMVYRKYRFMRLDGSSKISERRDMFAVPG 562 (573)
Q Consensus 494 ~~~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~--~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~ 562 (573)
++...+-.+-+.++|+.+.++|+-.+||..-.+.-| -.+..-++.|+.|-.+.. +.+++-.+.+..|-
T Consensus 30 yirtatssqdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlks-tdpeeltqrvrefl 99 (112)
T 2lnd_A 30 YIRTATSSQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKS-TDPEELTQRVREFL 99 (112)
T ss_dssp TEEEECSHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEEC-CCHHHHHHHHHHHH
T ss_pred eeeeccchhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhcc-CCHHHHHHHHHHHH
Confidence 344445567888999999889999999988765544 455566678999988865 45555555555553
No 366
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=34.12 E-value=31 Score=25.97 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=30.0
Q ss_pred CeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCC
Q psy13010 516 HRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550 (573)
Q Consensus 516 ~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~ 550 (573)
.++||||+.-.........|...|+++..++|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999887778888899999999777888864
No 367
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=33.30 E-value=38 Score=31.83 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=27.9
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc--C-cccHHHHH
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS--P-ASTLHNWQ 106 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~--P-~~l~~qW~ 106 (573)
+.+-.-|.|||.+++.+...+...+ .++|+|= | ..-+..|.
T Consensus 9 v~s~KGGvGKTT~a~nLA~~La~~G---~~VlliD~D~~q~~l~~~l 52 (286)
T 2xj4_A 9 VGNEKGGAGKSTIAVHLVTALLYGG---AKVAVIDLDLRQRTSARFF 52 (286)
T ss_dssp ECCSSSCTTHHHHHHHHHHHHHHTT---CCEEEEECCTTTCHHHHHH
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCC---CcEEEEECCCCCCCHHHHh
Confidence 4456789999999999998888753 3666653 3 33444554
No 368
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=32.89 E-value=1.5e+02 Score=30.16 Aligned_cols=38 Identities=32% Similarity=0.322 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 48 GMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 48 ~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
++.-|.. +-++...+|.-..|+|||..+..++......
T Consensus 141 ~ID~L~p-i~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~ 178 (473)
T 1sky_E 141 VVDLLAP-YIKGGKIGLFGGAGVGKTVLIQELIHNIAQE 178 (473)
T ss_dssp HHHHHSC-EETTCEEEEECCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhh-hccCCEEEEECCCCCCccHHHHHHHhhhhhc
Confidence 5554433 2345667888899999999887777765544
No 369
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=32.39 E-value=37 Score=31.37 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=23.5
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEE
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV 96 (573)
+.+---|.|||.+++.+...+. .+ .++|+|
T Consensus 32 v~s~kGGvGKTT~a~~LA~~la-~g---~~Vlli 61 (267)
T 3k9g_A 32 IASIKGGVGKSTSAIILATLLS-KN---NKVLLI 61 (267)
T ss_dssp ECCSSSSSCHHHHHHHHHHHHT-TT---SCEEEE
T ss_pred EEeCCCCchHHHHHHHHHHHHH-CC---CCEEEE
Confidence 5567889999999999988887 43 366666
No 370
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=32.30 E-value=2.2 Score=33.04 Aligned_cols=31 Identities=10% Similarity=0.278 Sum_probs=21.6
Q ss_pred CcccCCCCCCCCcccccccc--cCCchhhhhhh
Q psy13010 389 PVILPQQPTYLPVCFFESTQ--NMVSPALKKKI 419 (573)
Q Consensus 389 ~~~~~c~h~~~~~c~~~~~~--~~~~~~~~~~~ 419 (573)
-.+++|.|.||-+|+..... ...||.|+..+
T Consensus 15 gRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 15 GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPV 47 (101)
T ss_dssp EEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred eeeccccccHHHHHHHHHHhccCCCCcCcCCee
Confidence 46799999999999887643 44555544433
No 371
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=32.22 E-value=46 Score=32.09 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=25.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS 97 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~ 97 (573)
.+..-.-|.|||.++.++...+...+ .++|+|-
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~G---~rVllvD 54 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKVR---SSVLLIS 54 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTSS---SCEEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCC---CeEEEEE
Confidence 36778899999999999988888753 3677763
No 372
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=32.02 E-value=33 Score=37.56 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=26.7
Q ss_pred HHHHHHHHHh--CCCCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 48 GMNWLANLYD--QGINGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 48 ~v~~l~~~~~--~~~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
.+..+...+. ...+.+|.-++|+|||..|-++...+..
T Consensus 188 ~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 188 EIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp HHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 3333444443 3445699999999999999888887754
No 373
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=31.70 E-value=28 Score=32.03 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=24.2
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS 97 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~ 97 (573)
+.+-.-|.|||.+++.+...+...+ .++|+|=
T Consensus 11 v~s~kGGvGKTt~a~~LA~~la~~g---~~VlliD 42 (257)
T 1wcv_1 11 LANQKGGVGKTTTAINLAAYLARLG---KRVLLVD 42 (257)
T ss_dssp ECCSSCCHHHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEeCCCCchHHHHHHHHHHHHHHCC---CCEEEEE
Confidence 4446779999999999998887753 3777763
No 374
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=31.02 E-value=48 Score=32.13 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=29.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC--cccHHHHH
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP--ASTLHNWQ 106 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P--~~l~~qW~ 106 (573)
.++.---|.|||.+++++...+...+ +++|+|-- ..-+..|.
T Consensus 19 ~~~sgkGGvGKTt~a~~lA~~la~~g---~~vllid~D~~~~l~~~l 62 (334)
T 3iqw_A 19 IFVGGKGGVGKTTTSCSLAIQLAKVR---RSVLLLSTDPAHNLSDAF 62 (334)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTTSS---SCEEEEECCSSCHHHHHH
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhCC---CcEEEEECCCCCChhHHh
Confidence 36777899999999999988887653 35666653 34344443
No 375
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=30.64 E-value=38 Score=32.74 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHH----hCCCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 43 HYQLKGMNWLANLY----DQGINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 43 ~~Q~~~v~~l~~~~----~~~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
++.+..+.+.+... ......+|.-++|+|||..+-+++..+
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 44555565544322 112456888899999999887776665
No 376
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=30.17 E-value=1.5e+02 Score=21.57 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=31.7
Q ss_pred eEEEEe-cchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcC
Q psy13010 517 RVLVYS-QMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPG 562 (573)
Q Consensus 517 KvlIFs-q~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~ 562 (573)
++++|+ .+...=..+...|...|++|..++=......+++..+.+.
T Consensus 7 ~v~ly~~~~C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~ 53 (92)
T 2khp_A 7 DVIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSG 53 (92)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHT
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhC
Confidence 677776 4566777788888888888887776655555555555444
No 377
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=29.96 E-value=1.5e+02 Score=35.62 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=30.7
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHH-HH
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLH-NW 105 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~-qW 105 (573)
.|.-..|+|||..++.+++.....+ +..+.|.+.+.+. .+
T Consensus 1435 ei~g~~~sGkttl~~~~~a~~~~~g---~~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1435 EIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEHALDPIY 1475 (1706)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTT---CCEEEECTTSCCCHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEEecCCCCCHHH
Confidence 7788899999999999998777664 4677777765444 46
No 378
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=29.86 E-value=44 Score=34.57 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=29.6
Q ss_pred hhhccCccEEEEcccccccCcchHHHHHHHhcccCcEEEEeccCCCCCHHHHHHHHH
Q psy13010 163 YFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLH 219 (573)
Q Consensus 163 ~l~~~~~~~vIiDE~h~~kn~~s~~~~~~~~l~~~~~~lLTgTP~~n~~~el~~ll~ 219 (573)
.....+++.++++|.- ... ...+++.+...+.. + +|-+.|+..++...+.
T Consensus 328 ~~LR~~PD~iivgEir---~~E--~~~~l~a~~tGh~~-~-sT~Ha~~~~~~l~Rl~ 377 (511)
T 2oap_1 328 AALRQRPDYIIVGEVR---GRE--AQTLFQAMSTGHAS-Y-STLHAGDINQMVYRLE 377 (511)
T ss_dssp TTGGGCCSEEEESCCC---STH--HHHHHHHHHTTCEE-E-EEEECSSHHHHHHHHH
T ss_pred HhhccCCCeEEeCCcC---HHH--HHHHHHhhcCCCCc-c-cccccCCHHHHHHHHH
Confidence 3344689999999974 222 33445554444433 2 3566788887766554
No 379
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=29.37 E-value=1.1e+02 Score=30.56 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc
Q psy13010 46 LKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS 97 (573)
Q Consensus 46 ~~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~ 97 (573)
..++..+.. +.++..+.|....|+|||..+..+...+...+. +-.+|++
T Consensus 162 iraID~~~p-i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~--~v~~I~~ 210 (422)
T 3ice_A 162 ARVLDLASP-IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP--DCVLMVL 210 (422)
T ss_dssp HHHHHHHSC-CBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCT--TSEEEEE
T ss_pred ceeeeeeee-ecCCcEEEEecCCCCChhHHHHHHHHHHhhcCC--CeeEEEE
Confidence 444443322 234566677889999999988666666655432 2345554
No 380
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=29.35 E-value=46 Score=27.46 Aligned_cols=38 Identities=11% Similarity=0.185 Sum_probs=30.8
Q ss_pred hCCCeEEEEecchhHHHHHHHHHHhCCCe-EEEecCCCC
Q psy13010 513 ASGHRVLVYSQMTKMIDLLEEFMVYRKYR-FMRLDGSSK 550 (573)
Q Consensus 513 ~~~~KvlIFsq~~~~l~~l~~~L~~~gi~-~~~i~G~~~ 550 (573)
..+.+|||||..-.........|...|+. +..++|++.
T Consensus 54 ~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 54 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 45789999999877777888999999996 667888654
No 381
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=29.03 E-value=25 Score=34.02 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=21.0
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHHh
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHIA 84 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~~ 84 (573)
..+.+|.-++|+|||..|-++...+.
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 45679999999999999877777553
No 382
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=28.88 E-value=40 Score=27.00 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=31.4
Q ss_pred hCCCeEEEEecchhH--HHHHHHHHHhCCCeEEEecCCCC
Q psy13010 513 ASGHRVLVYSQMTKM--IDLLEEFMVYRKYRFMRLDGSSK 550 (573)
Q Consensus 513 ~~~~KvlIFsq~~~~--l~~l~~~L~~~gi~~~~i~G~~~ 550 (573)
..+.+|||||..-.. .......|...|+++..++|++.
T Consensus 69 ~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 69 DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp CTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 357899999988655 67888899999999888899875
No 383
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=28.51 E-value=3.2e+02 Score=26.94 Aligned_cols=40 Identities=18% Similarity=0.031 Sum_probs=25.1
Q ss_pred CeEEeCCCCCCHHHHHHHHHHHHhhh---cCCCCCEEEEcCcc
Q psy13010 61 NGILADEMGLGKTVQSIAFLCHIAET---YDVWGPFLIISPAS 100 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~~~~~---~~~~~~~LIV~P~~ 100 (573)
-..|.-+.|+|||..+..++...... ++..++++++.-..
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 34778899999998887655443321 11235677776644
No 384
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=27.61 E-value=29 Score=30.20 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=19.6
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLC 81 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~ 81 (573)
+.+.+|.-+.|.|||-.|++++.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 44568899999999999988887
No 385
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=27.57 E-value=55 Score=26.62 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=32.0
Q ss_pred hCCCeEEEEecchhHHHHHHHHHHhCCCe-EEEecCCCC
Q psy13010 513 ASGHRVLVYSQMTKMIDLLEEFMVYRKYR-FMRLDGSSK 550 (573)
Q Consensus 513 ~~~~KvlIFsq~~~~l~~l~~~L~~~gi~-~~~i~G~~~ 550 (573)
..+.+|||||+.-.........|...|+. +..++|++.
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 46789999999877777888899999996 888999865
No 386
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=27.50 E-value=40 Score=29.12 Aligned_cols=27 Identities=15% Similarity=0.049 Sum_probs=19.4
Q ss_pred hCCCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 57 DQGINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 57 ~~~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
..+...+|.-.+|+|||.++-.+...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345556778899999998876655543
No 387
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=27.38 E-value=58 Score=34.29 Aligned_cols=34 Identities=29% Similarity=0.291 Sum_probs=26.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
.++.-..|.|||.+++++...+...+ .++|+|--
T Consensus 11 ~~~sgkGGvGKTT~a~~lA~~lA~~G---~rVLlvd~ 44 (589)
T 1ihu_A 11 LFFTGKGGVGKTSISCATAIRLAEQG---KRVLLVST 44 (589)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEC
T ss_pred EEEeCCCcCHHHHHHHHHHHHHHHCC---CcEEEEEC
Confidence 36777889999999999999888763 36777654
No 388
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=26.90 E-value=1e+02 Score=32.68 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=45.8
Q ss_pred ccccHHHHHHHHHHHHh-CCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCC
Q psy13010 497 DAGKLSVLDDLLKRLKA-SGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGS 548 (573)
Q Consensus 497 ~s~Kl~~l~~li~~~~~-~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~ 548 (573)
.+||...+.+++..+.. .+.+|+|.+..-..++.|.+.|...|++++|+.+.
T Consensus 205 GTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~~~ 257 (624)
T 2gk6_A 205 GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAK 257 (624)
T ss_dssp TSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECCCT
T ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEeeccc
Confidence 47899999999998876 68899999999999999999999899999988553
No 389
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=26.88 E-value=80 Score=29.57 Aligned_cols=52 Identities=8% Similarity=0.047 Sum_probs=32.5
Q ss_pred HhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHH
Q psy13010 56 YDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEM 109 (573)
Q Consensus 56 ~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el 109 (573)
+..+.-.+|+-..|+|||..+..++..+....+ ++++++....-..+....+
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G--~~v~~~~~e~~~~~~~~r~ 83 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG--KKVGLAMLEESVEETAEDL 83 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC--CCEEEEESSSCHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC--CeEEEEeCcCCHHHHHHHH
Confidence 344555577889999999988777776655422 2677776543333444333
No 390
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=26.71 E-value=1.6e+02 Score=27.22 Aligned_cols=58 Identities=12% Similarity=-0.005 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEecchh--HHHHHHHHHHhCCCeE-----EEec--CCCCHHHHHHHHh
Q psy13010 502 SVLDDLLKRLKASGHRVLVYSQMTK--MIDLLEEFMVYRKYRF-----MRLD--GSSKISERRDMFA 559 (573)
Q Consensus 502 ~~l~~li~~~~~~~~KvlIFsq~~~--~l~~l~~~L~~~gi~~-----~~i~--G~~~~~~R~~~i~ 559 (573)
.-+.++++.+.+.|.++.|.|.-.. ........|+..||++ +.+. ..-+...|.++.+
T Consensus 104 pg~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~~~L~~lGi~~~~~~~Lilr~~~~~K~~~r~~L~~ 170 (260)
T 3pct_A 104 PGAVEFSNYVNANGGTMFFVSNRRDDVEKAGTVDDMKRLGFTGVNDKTLLLKKDKSNKSVRFKQVED 170 (260)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEEEETTTSHHHHHHHHHHHTCCCCSTTTEEEESSCSSSHHHHHHHHT
T ss_pred ccHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCcCccccceeEecCCCCChHHHHHHHHh
Confidence 3467888888888999999997655 6788899999999985 3343 2334445555554
No 391
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=26.69 E-value=86 Score=22.92 Aligned_cols=43 Identities=14% Similarity=0.315 Sum_probs=27.4
Q ss_pred eEEEEe-cchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCc
Q psy13010 517 RVLVYS-QMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVP 561 (573)
Q Consensus 517 KvlIFs-q~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F 561 (573)
++++|+ .+...=..+...|...|++|..++=. .+.+.+....+
T Consensus 7 ~v~~y~~~~C~~C~~~~~~L~~~~i~~~~vdv~--~~~~~~l~~~~ 50 (89)
T 2klx_A 7 EIILYTRPNCPYCKRARDLLDKKGVKYTDIDAS--TSLRQEMVQRA 50 (89)
T ss_dssp CEEEESCSCCTTTHHHHHHHHHHTCCEEEECSC--HHHHHHHHHHH
T ss_pred eEEEEECCCChhHHHHHHHHHHcCCCcEEEECC--HHHHHHHHHHh
Confidence 577776 44555566677777778887777655 44455555555
No 392
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=26.43 E-value=64 Score=26.66 Aligned_cols=39 Identities=10% Similarity=0.071 Sum_probs=31.9
Q ss_pred hCCCeEEEEecch--hHHHHHHHHHHhCCCeEEEecCCCCH
Q psy13010 513 ASGHRVLVYSQMT--KMIDLLEEFMVYRKYRFMRLDGSSKI 551 (573)
Q Consensus 513 ~~~~KvlIFsq~~--~~l~~l~~~L~~~gi~~~~i~G~~~~ 551 (573)
..+.+|||||..- .........|...|+.+..++|++..
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 3578999999976 46778888999999998889998753
No 393
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=26.36 E-value=63 Score=31.74 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=25.2
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS 97 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~ 97 (573)
+.+---|.|||.+++.+...+...+ .++|+|=
T Consensus 148 v~s~KGGvGKTT~a~nLA~~La~~g---~rVlliD 179 (373)
T 3fkq_A 148 FTSPCGGVGTSTVAAACAIAHANMG---KKVFYLN 179 (373)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHHT---CCEEEEE
T ss_pred EECCCCCChHHHHHHHHHHHHHhCC---CCEEEEE
Confidence 5566889999999999988888763 3677764
No 394
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=25.99 E-value=2.1e+02 Score=21.43 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=29.7
Q ss_pred eEEEEecchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcC
Q psy13010 517 RVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVPG 562 (573)
Q Consensus 517 KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~ 562 (573)
-++|||.-..|+.-.....+++|+.+..+ -++.+-...++..-
T Consensus 4 vivvfstdeetlrkfkdiikkngfkvrtv---rspqelkdsieelv 46 (134)
T 2l69_A 4 VIVVFSTDEETLRKFKDIIKKNGFKVRTV---RSPQELKDSIEELV 46 (134)
T ss_dssp EEEECCCCHHHHHHHHHHHHHTTCEEEEE---CSHHHHHHHHHHHT
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCceEEEe---cCHHHHHHHHHHHH
Confidence 36788888888888888888888888777 34444444444433
No 395
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=25.71 E-value=1.1e+02 Score=34.63 Aligned_cols=25 Identities=4% Similarity=-0.025 Sum_probs=21.6
Q ss_pred CCeEEEEecchhHHHHHHHHHHhCC
Q psy13010 515 GHRVLVYSQMTKMIDLLEEFMVYRK 539 (573)
Q Consensus 515 ~~KvlIFsq~~~~l~~l~~~L~~~g 539 (573)
+.|++|||.....+..+.+.|...+
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~ 561 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQ 561 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhh
Confidence 5699999999999999999997654
No 396
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=25.51 E-value=1.1e+02 Score=25.38 Aligned_cols=48 Identities=21% Similarity=0.292 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCeEEEEecch-hHHHHHHHHHHhCCCeEEEecCCCC
Q psy13010 503 VLDDLLKRLKASGHRVLVYSQMT-KMIDLLEEFMVYRKYRFMRLDGSSK 550 (573)
Q Consensus 503 ~l~~li~~~~~~~~KvlIFsq~~-~~l~~l~~~L~~~gi~~~~i~G~~~ 550 (573)
.+.+.|+.+.+.|.+++|.|.-. ..+..+.+.|...|+++..+.-..|
T Consensus 28 ~~~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~~~gi~~~~I~~n~P 76 (142)
T 2obb_A 28 FAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFYAANKDYP 76 (142)
T ss_dssp THHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCCSEESSSST
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCcccHHHHHHHHHHcCCCeEEEEcCCc
Confidence 35677777778899999999754 4566777778889998766655444
No 397
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=25.50 E-value=70 Score=31.15 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=28.1
Q ss_pred EEeCCCCCCHHHHHHHHHHHHh--hhcCCCCCEEEEcC--cccHHHHH
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIA--ETYDVWGPFLIISP--ASTLHNWQ 106 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~--~~~~~~~~~LIV~P--~~l~~qW~ 106 (573)
++.---|.|||.+++++...+. ..+ +++|+|-- .+-+..|.
T Consensus 22 ~~~gkGGvGKTt~a~~lA~~la~~~~g---~~vllid~D~~~~l~~~~ 66 (348)
T 3io3_A 22 FVGGKGGVGKTTTSSSVAVQLALAQPN---EQFLLISTDPAHNLSDAF 66 (348)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHCTT---SCEEEEECCSSCHHHHHH
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHhcCC---CeEEEEECCCCCChHHHh
Confidence 6667889999999999888887 442 36666654 33344443
No 398
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=25.47 E-value=1.8e+02 Score=33.02 Aligned_cols=68 Identities=15% Similarity=0.023 Sum_probs=53.4
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHH----hCCC----eEEEecCCCCHHHHHHHHhCcCC
Q psy13010 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMV----YRKY----RFMRLDGSSKISERRDMFAVPGI 563 (573)
Q Consensus 496 ~~s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~----~~gi----~~~~i~G~~~~~~R~~~i~~F~~ 563 (573)
..|||..+.+-++..+...+.++||.+.......-+.+.++ ..|+ .+..++|+++..+|....+.+.+
T Consensus 80 TGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~ 155 (1054)
T 1gku_B 80 TGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN 155 (1054)
T ss_dssp BTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG
T ss_pred CCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC
Confidence 35899987777777777778899999998876665555554 3577 88999999999998888877766
No 399
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=25.45 E-value=69 Score=32.31 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=24.9
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
+++-..|.|||.++..++..+....+ .++++|.-
T Consensus 104 ~ivG~~GvGKTT~a~~LA~~l~~~~G--~kVllvd~ 137 (433)
T 2xxa_A 104 LMAGLQGAGKTTSVGKLGKFLREKHK--KKVLVVSA 137 (433)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTSC--CCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcC--CeEEEEec
Confidence 44567999999999999988876512 35666654
No 400
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=25.34 E-value=59 Score=31.72 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=25.6
Q ss_pred EEeCCCCCCHHHHHHHHHHHHh--hhcCCCCCEEEEcC
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIA--ETYDVWGPFLIISP 98 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~--~~~~~~~~~LIV~P 98 (573)
+..---|.|||.+++++...+. ..+ +++|+|-.
T Consensus 22 v~sgKGGvGKTTvaanLA~~lA~~~~G---~rVLLvD~ 56 (354)
T 2woj_A 22 FVGGKGGVGKTTSSCSIAIQMALSQPN---KQFLLIST 56 (354)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHHCTT---SCEEEEEC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHhcCC---CeEEEEEC
Confidence 6666889999999999988888 543 36777755
No 401
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=25.01 E-value=53 Score=28.71 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=19.9
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
.+...+|.-.+|+|||..+-.+...+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34456788899999999887776655
No 402
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=24.53 E-value=58 Score=27.35 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=31.2
Q ss_pred CCeEEEEecch---------hHHHHHHHHHHhCCCeEEEecCCCC
Q psy13010 515 GHRVLVYSQMT---------KMIDLLEEFMVYRKYRFMRLDGSSK 550 (573)
Q Consensus 515 ~~KvlIFsq~~---------~~l~~l~~~L~~~gi~~~~i~G~~~ 550 (573)
++.|||||..- .+...+...|...|+++..++|++.
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~ 137 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 137 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHH
Confidence 67999999987 4688889999999999999999864
No 403
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=24.44 E-value=1.2e+02 Score=28.14 Aligned_cols=59 Identities=8% Similarity=-0.036 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEecchh--HHHHHHHHHHhCCCeE-----EEec--CCCCHHHHHHHHhC
Q psy13010 502 SVLDDLLKRLKASGHRVLVYSQMTK--MIDLLEEFMVYRKYRF-----MRLD--GSSKISERRDMFAV 560 (573)
Q Consensus 502 ~~l~~li~~~~~~~~KvlIFsq~~~--~l~~l~~~L~~~gi~~-----~~i~--G~~~~~~R~~~i~~ 560 (573)
.-+.++++.+.+.|.+++|.|.-.. ........|...||++ +.+. ..-+...|.++.+.
T Consensus 104 pG~~ell~~L~~~G~ki~ivTgR~~~~~r~~T~~~L~~lGi~~~~~~~Lilr~~~~~K~~~r~~l~~~ 171 (262)
T 3ocu_A 104 PGAVEFNNYVNSHNGKVFYVTNRKDSTEKSGTIDDMKRLGFNGVEESAFYLKKDKSAKAARFAEIEKQ 171 (262)
T ss_dssp TTHHHHHHHHHHTTEEEEEEEEEETTTTHHHHHHHHHHHTCSCCSGGGEEEESSCSCCHHHHHHHHHT
T ss_pred ccHHHHHHHHHHCCCeEEEEeCCCccchHHHHHHHHHHcCcCcccccceeccCCCCChHHHHHHHHhc
Confidence 3467788888888999999997665 6888999999999985 3333 33455566666665
No 404
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=24.40 E-value=79 Score=27.05 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=19.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
.+|.-.+|+|||..+-.+...+...
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 4677889999999987777776554
No 405
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=24.33 E-value=1.8e+02 Score=20.42 Aligned_cols=45 Identities=13% Similarity=0.238 Sum_probs=27.3
Q ss_pred eEEEEe-cchhHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHhCc
Q psy13010 517 RVLVYS-QMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDMFAVP 561 (573)
Q Consensus 517 KvlIFs-q~~~~l~~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F 561 (573)
++++|+ .+...=..+...|...|++|..++=......+.+..+.+
T Consensus 2 ~i~~y~~~~C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~ 47 (82)
T 1fov_A 2 NVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRS 47 (82)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHH
T ss_pred cEEEEECCCChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHh
Confidence 466665 355666677777777788777766554444444444333
No 406
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=24.25 E-value=1.2e+02 Score=28.05 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=32.1
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcC-------CCCCEEEEcCcccHHHHHHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYD-------VWGPFLIISPASTLHNWQQEM 109 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~-------~~~~~LIV~P~~l~~qW~~el 109 (573)
.+.-.+|.-..|+|||..+..++..+..... ..++++++....-..+....+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~ 87 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRL 87 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHH
Confidence 3444577889999999998888775543100 125677776654444443333
No 407
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=24.17 E-value=76 Score=31.57 Aligned_cols=29 Identities=28% Similarity=0.304 Sum_probs=21.3
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
+|.+++|..+.|+|||..+-.+++.....
T Consensus 174 rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~ 202 (427)
T 3l0o_A 174 KGQRGMIVAPPKAGKTTILKEIANGIAEN 202 (427)
T ss_dssp TTCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCChhHHHHHHHHHHhhc
Confidence 45566777789999999886666666544
No 408
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=24.16 E-value=64 Score=32.54 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=25.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P 98 (573)
.++.-..|.|||.++..+...+...+ .++++|.-
T Consensus 102 I~ivG~~GvGKTTla~~La~~l~~~G---~kVllv~~ 135 (432)
T 2v3c_C 102 ILLVGIQGSGKTTTAAKLARYIQKRG---LKPALIAA 135 (432)
T ss_dssp EEEECCSSSSTTHHHHHHHHHHHHHH---CCEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEec
Confidence 35566799999999988888887653 36677764
No 409
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=23.88 E-value=35 Score=30.39 Aligned_cols=22 Identities=14% Similarity=0.431 Sum_probs=17.9
Q ss_pred CeEEeCCCCCCHHHHHHHHHHH
Q psy13010 61 NGILADEMGLGKTVQSIAFLCH 82 (573)
Q Consensus 61 ~~ll~de~G~GKT~~~ia~~~~ 82 (573)
+.+|.-.+|+|||-.|++++..
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4588999999999888776653
No 410
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=23.87 E-value=1.1e+02 Score=30.08 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecchhHHH------HHHHHHHhCCCeEEEecCCCCHHHHHHHHhCcC
Q psy13010 501 LSVLDDLLKRLKASGHRVLVYSQMTKMID------LLEEFMVYRKYRFMRLDGSSKISERRDMFAVPG 562 (573)
Q Consensus 501 l~~l~~li~~~~~~~~KvlIFsq~~~~l~------~l~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~ 562 (573)
...+.++++..++-|--+++-||.+.-+. .....+..-+ + +|-...+..+++.+.+.|.
T Consensus 283 ~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~--~-~i~l~~~~~~~~~~~~~~~ 347 (392)
T 4ag6_A 283 IAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPT--Y-KLLLAQGEKDLEAITTLMN 347 (392)
T ss_dssp HHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCS--E-EEECSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhh--h-hheeCCChhhHHHHHHHhC
Confidence 45677888888777888999999887553 2344555333 2 2334456666666666554
No 411
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=23.72 E-value=71 Score=24.79 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=31.5
Q ss_pred hCCCeEEEEecchhHHHHHHHHHHhCCCeEEEecCCCC
Q psy13010 513 ASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550 (573)
Q Consensus 513 ~~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G~~~ 550 (573)
..+.+|||||..-.........|...|+.-..++|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 46789999999877777888899999986677888865
No 412
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=23.59 E-value=1.2e+02 Score=30.24 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHHHHHHHhCC-CCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEE
Q psy13010 40 NLKHYQLKGMNWLANLYDQG-INGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96 (573)
Q Consensus 40 ~L~~~Q~~~v~~l~~~~~~~-~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV 96 (573)
.+.+.+...+..+ +... +-.+|.-.+|+|||.+.-+++..+... .+.++++
T Consensus 150 g~~~~~~~~L~~l---~~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ 201 (418)
T 1p9r_A 150 GMTAHNHDNFRRL---IKRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTV 201 (418)
T ss_dssp CCCHHHHHHHHHH---HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEE
T ss_pred CCCHHHHHHHHHH---HHhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEe
Confidence 3555566665544 2322 223788899999998877777665432 2455544
No 413
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=23.55 E-value=56 Score=27.92 Aligned_cols=24 Identities=29% Similarity=0.167 Sum_probs=18.5
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
...+|.-.+|+|||..+-.+...+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 345778889999999887766654
No 414
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=23.50 E-value=1.1e+02 Score=29.94 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=20.5
Q ss_pred hCCCC--eEEeCCCCCCHHHHHHHHHHHHh
Q psy13010 57 DQGIN--GILADEMGLGKTVQSIAFLCHIA 84 (573)
Q Consensus 57 ~~~~~--~ll~de~G~GKT~~~ia~~~~~~ 84 (573)
..+.. .+|.-.+|+|||..+-++...+.
T Consensus 20 ~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 20 EDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34444 57788999999998877666554
No 415
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=23.45 E-value=1.9e+02 Score=29.64 Aligned_cols=50 Identities=16% Similarity=0.188 Sum_probs=28.9
Q ss_pred CCCCeEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEcC----cccHHHHHHHHHH
Q psy13010 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP----ASTLHNWQQEMER 111 (573)
Q Consensus 58 ~~~~~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P----~~l~~qW~~el~~ 111 (573)
+|.+..|....|+|||..++..|..... ..-+.|++- ..-+.++.+++..
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~ 214 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQ 214 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhh
Confidence 4555566669999999987765554432 123334443 3334455666655
No 416
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=23.34 E-value=44 Score=32.72 Aligned_cols=31 Identities=23% Similarity=0.211 Sum_probs=23.2
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEE
Q psy13010 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96 (573)
Q Consensus 63 ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV 96 (573)
+.+.--|.|||.+++.+...+...+ .++|+|
T Consensus 6 v~s~KGGvGKTT~a~nLA~~LA~~G---~rVLlI 36 (361)
T 3pg5_A 6 FFNNKGGVGKTTLSTNVAHYFALQG---KRVLYV 36 (361)
T ss_dssp BCCSSCCHHHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhCC---CcEEEE
Confidence 3445678999999998888887643 367776
No 417
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=23.27 E-value=72 Score=27.13 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=19.1
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHHHH
Q psy13010 59 GINGILADEMGLGKTVQSIAFLCHI 83 (573)
Q Consensus 59 ~~~~ll~de~G~GKT~~~ia~~~~~ 83 (573)
+...+|.-.+|+|||..+-.+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4456888899999999886665544
No 418
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=22.98 E-value=2.7e+02 Score=28.55 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCCeEEeCCCCCCHHHHHHHHHHHHhhhc----CCCCCEEEEcC----cccHHHHHHHHHH
Q psy13010 47 KGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY----DVWGPFLIISP----ASTLHNWQQEMER 111 (573)
Q Consensus 47 ~~v~~l~~~~~~~~~~ll~de~G~GKT~~~ia~~~~~~~~~----~~~~~~LIV~P----~~l~~qW~~el~~ 111 (573)
.++.-|.-. -+|.+..|....|+|||..++..|....... +...-+.|++- ..-+.++.+++..
T Consensus 151 raID~l~Pi-grGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~ 222 (510)
T 2ck3_A 151 KAVDSLVPI-GRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTD 222 (510)
T ss_dssp HHHHHHSCC-BTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred eeecccccc-ccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHh
Confidence 344433322 2355556666999999999876666554421 11123344433 3344456666655
No 419
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=22.63 E-value=1.1e+02 Score=33.54 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=45.0
Q ss_pred ccccHHHHHHHHHHHHh-CCCeEEEEecchhHHHHHHHHHHhCCCeEEEecC
Q psy13010 497 DAGKLSVLDDLLKRLKA-SGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDG 547 (573)
Q Consensus 497 ~s~Kl~~l~~li~~~~~-~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G 547 (573)
.+||...+.+++..+.. .+.+|||.+.....++.|.+.|...|+.++|+.+
T Consensus 385 GTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~g~ 436 (802)
T 2xzl_A 385 GTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTA 436 (802)
T ss_dssp TSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCEEECCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccEEeecc
Confidence 47899999999988776 6889999999999999999999999999988854
No 420
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=22.38 E-value=67 Score=25.83 Aligned_cols=38 Identities=8% Similarity=0.003 Sum_probs=31.7
Q ss_pred hCCCeEEEEecchhHHHHHHHHHHhCCCe-EEEecCCCC
Q psy13010 513 ASGHRVLVYSQMTKMIDLLEEFMVYRKYR-FMRLDGSSK 550 (573)
Q Consensus 513 ~~~~KvlIFsq~~~~l~~l~~~L~~~gi~-~~~i~G~~~ 550 (573)
..+.+|||||..-.........|...|+. +..++|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 45789999999877777888889989996 777999875
No 421
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=22.33 E-value=89 Score=28.43 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=24.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhhcCCCCCEEEEc
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIIS 97 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~ 97 (573)
.++.--.|.|||..+..++..+. .+ .+++||-
T Consensus 17 ~~~~GkgGvGKTTl~~~La~~l~-~g---~~v~vvd 48 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGEFGRYLE-DN---YKVAYVN 48 (262)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT-TT---SCEEEEE
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH-CC---CeEEEEe
Confidence 37788999999999988888776 42 3666665
No 422
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=22.03 E-value=97 Score=25.98 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=34.4
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEecchhHHHHHHHHHH
Q psy13010 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMV 536 (573)
Q Consensus 498 s~Kl~~l~~li~~~~~~~~KvlIFsq~~~~l~~l~~~L~ 536 (573)
..+...+-.|+......|.||+|++.-...+..|.+.|=
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW 60 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALW 60 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHh
Confidence 347778888999988899999999999999999999993
No 423
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=21.88 E-value=99 Score=24.97 Aligned_cols=38 Identities=5% Similarity=0.261 Sum_probs=30.6
Q ss_pred hCCCeEEEEecchhHHHHHHHHHHhCCCe-EEEecCCCC
Q psy13010 513 ASGHRVLVYSQMTKMIDLLEEFMVYRKYR-FMRLDGSSK 550 (573)
Q Consensus 513 ~~~~KvlIFsq~~~~l~~l~~~L~~~gi~-~~~i~G~~~ 550 (573)
..+..|||||+.=.--......|...|+. +..+.|++.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 35789999998866667778888889995 778999874
No 424
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=21.15 E-value=24 Score=24.45 Aligned_cols=33 Identities=9% Similarity=-0.074 Sum_probs=24.5
Q ss_pred hccccCCCCCCCCCCCCCcccCCCC-----CCCCcccc
Q psy13010 372 EREEGTILPEFPHVPRDPVILPQQP-----TYLPVCFF 404 (573)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~c~h-----~~~~~c~~ 404 (573)
++++...|.||....+++.+.||.. .++..|+.
T Consensus 2 e~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~ 39 (60)
T 1vyx_A 2 EDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLS 39 (60)
T ss_dssp TTCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHH
T ss_pred CCCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHH
Confidence 3456678999987777777899753 78888864
No 425
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=21.14 E-value=76 Score=25.90 Aligned_cols=38 Identities=11% Similarity=0.203 Sum_probs=31.7
Q ss_pred hCCCeEEEEecchhHHHHHHHHHHhCCCe-EEEecCCCC
Q psy13010 513 ASGHRVLVYSQMTKMIDLLEEFMVYRKYR-FMRLDGSSK 550 (573)
Q Consensus 513 ~~~~KvlIFsq~~~~l~~l~~~L~~~gi~-~~~i~G~~~ 550 (573)
..+.+|||||..-.........|...|+. +..++|++.
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 45789999999877777888899999995 788999875
No 426
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=20.91 E-value=2.5e+02 Score=26.98 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=19.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHhhh
Q psy13010 62 GILADEMGLGKTVQSIAFLCHIAET 86 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~~~~~ 86 (573)
..|.-.+|.|||..+..++..+...
T Consensus 82 I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 82 VGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3666789999999988888877654
No 427
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=20.83 E-value=87 Score=25.41 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=30.8
Q ss_pred CCCeEEEEecchhHHHHHHHHHHhCCCe-EEEecCCCC
Q psy13010 514 SGHRVLVYSQMTKMIDLLEEFMVYRKYR-FMRLDGSSK 550 (573)
Q Consensus 514 ~~~KvlIFsq~~~~l~~l~~~L~~~gi~-~~~i~G~~~ 550 (573)
.+.+|||||..-.........|...|+. +..++|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4779999999877777888899999996 777888864
No 428
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=20.76 E-value=95 Score=28.82 Aligned_cols=49 Identities=10% Similarity=0.077 Sum_probs=36.2
Q ss_pred HHHHHHHHHH-HhCCCeEEEEecchhH-HHHHHHHHHhCCC-eEEEecCCCC
Q psy13010 502 SVLDDLLKRL-KASGHRVLVYSQMTKM-IDLLEEFMVYRKY-RFMRLDGSSK 550 (573)
Q Consensus 502 ~~l~~li~~~-~~~~~KvlIFsq~~~~-l~~l~~~L~~~gi-~~~~i~G~~~ 550 (573)
..+.+.+..+ ...+.+|||||+.-.. ...+...|...|+ .+..++|++.
T Consensus 72 ~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~ 123 (280)
T 1urh_A 72 ETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLA 123 (280)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 4555666655 3467899999987555 7788888999999 4777888754
No 429
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=20.75 E-value=79 Score=30.86 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=16.3
Q ss_pred HHHhCCCCeEE-eCCCCCCHHHHHHH
Q psy13010 54 NLYDQGINGIL-ADEMGLGKTVQSIA 78 (573)
Q Consensus 54 ~~~~~~~~~ll-~de~G~GKT~~~ia 78 (573)
..+...+++|+ .-.+|+|||.++.+
T Consensus 87 ~~l~G~n~tifAYGqTGSGKTyTm~G 112 (354)
T 3gbj_A 87 NAFDGYNACIFAYGQTGSGKSYTMMG 112 (354)
T ss_dssp HHHTTCCEEEEEEECTTSSHHHHHTB
T ss_pred HHhCCceeEEEeeCCCCCCCceEEec
Confidence 33444444444 46899999998743
No 430
>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A
Probab=20.68 E-value=3.4e+02 Score=23.85 Aligned_cols=32 Identities=13% Similarity=0.306 Sum_probs=20.3
Q ss_pred hCCCeEEEEe---cch---------hHHHHHHHHHHhCCCeEEE
Q psy13010 513 ASGHRVLVYS---QMT---------KMIDLLEEFMVYRKYRFMR 544 (573)
Q Consensus 513 ~~~~KvlIFs---q~~---------~~l~~l~~~L~~~gi~~~~ 544 (573)
..|+|||||+ .|+ .+.+.+.+.++.+|++.+.
T Consensus 67 ~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~kGvd~I~ 110 (199)
T 4h86_A 67 SENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVI 110 (199)
T ss_dssp HHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHHSCCCEEE
T ss_pred cCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHHhcCCcEEE
Confidence 4588999997 333 3344455556788887433
No 431
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=20.60 E-value=2.6e+02 Score=24.92 Aligned_cols=60 Identities=13% Similarity=0.038 Sum_probs=40.1
Q ss_pred CCCeEEeCC-CCCCHHHHHHHHHHHHhhhcCCCCCEEEEcCcccHHHHHHHHHHHCCCceEEee
Q psy13010 59 GINGILADE-MGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121 (573)
Q Consensus 59 ~~~~ll~de-~G~GKT~~~ia~~~~~~~~~~~~~~~LIV~P~~l~~qW~~el~~~~~~~~v~~~ 121 (573)
+...||.|+ ..+|.|+ ++.+..+...+...+.+.++|.... .+=.+.+.+.+|+.++++.
T Consensus 129 ~~~VilvD~~laTG~T~--~~ai~~L~~~G~pe~~I~~~~~vaa-~egl~~l~~~~P~v~i~ta 189 (217)
T 3dmp_A 129 DRIFILCDPMVATGYSA--AHAIDVLKRRGVPGERLMFLALVAA-PEGVQVFQDAHPDVKLYVA 189 (217)
T ss_dssp TCEEEEECSEESSSHHH--HHHHHHHHTTTCCGGGEEEECSEEC-HHHHHHHHHHCTTCEEEES
T ss_pred CCEEEEEcCcccccHHH--HHHHHHHHHcCCCcCeEEEEEEEeC-HHHHHHHHHHCCCCEEEEE
Confidence 456788888 5799996 4667777765432156777777443 4445677777888877653
No 432
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=20.39 E-value=1.5e+02 Score=32.45 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=45.3
Q ss_pred ccccHHHHHHHHHHHHh-CCCeEEEEecchhHHHHHHHHHHhCCCeEEEecC
Q psy13010 497 DAGKLSVLDDLLKRLKA-SGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDG 547 (573)
Q Consensus 497 ~s~Kl~~l~~li~~~~~-~~~KvlIFsq~~~~l~~l~~~L~~~gi~~~~i~G 547 (573)
.+||...+..++..+.. .+.+|+|-+..-..++.|.+.|...|++++|+.+
T Consensus 381 GTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRlg~ 432 (800)
T 2wjy_A 381 GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCA 432 (800)
T ss_dssp TSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCEEECCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcceEeecc
Confidence 47899999999998876 6889999999999999999999999999988854
No 433
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=20.24 E-value=64 Score=31.12 Aligned_cols=21 Identities=24% Similarity=0.020 Sum_probs=18.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHH
Q psy13010 62 GILADEMGLGKTVQSIAFLCH 82 (573)
Q Consensus 62 ~ll~de~G~GKT~~~ia~~~~ 82 (573)
.+|.-++|+|||..++.++..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 488999999999999888776
No 434
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=20.12 E-value=73 Score=27.18 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=19.5
Q ss_pred CCeEEeCCCCCCHHHHHHHHHHHHhh
Q psy13010 60 INGILADEMGLGKTVQSIAFLCHIAE 85 (573)
Q Consensus 60 ~~~ll~de~G~GKT~~~ia~~~~~~~ 85 (573)
...+|.-.+|+|||.++-.+...+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34577889999999988776665543
Done!