Your job contains 1 sequence.
>psy13010
MDNVRHAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGI
NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVP
YWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI
KSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI
ESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSA
LKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCE
DYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIK
IEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPK
LVFEEALLCHKLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKY
RFMRLDGSSKISERRDMFAVPGILTHQSVGLLV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13010
(573 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0086613 - symbol:Ino80 "Ino80" species:7227 "Droso... 1539 6.8e-184 2
ZFIN|ZDB-GENE-041014-72 - symbol:ino80 "INO80 homolog (S.... 1366 6.6e-167 3
UNIPROTKB|Q9ULG1 - symbol:INO80 "DNA helicase INO80" spec... 1386 1.2e-166 2
MGI|MGI:1915392 - symbol:Ino80 "INO80 homolog (S. cerevis... 1377 1.0e-165 2
UNIPROTKB|E1BAN8 - symbol:INO80 "Uncharacterized protein"... 1372 3.5e-165 2
UNIPROTKB|F1SSV0 - symbol:INO80 "Uncharacterized protein"... 1372 3.5e-165 2
UNIPROTKB|F1PKX5 - symbol:INO80 "Uncharacterized protein"... 1372 3.5e-165 2
UNIPROTKB|F1NYY9 - symbol:INO80 "Uncharacterized protein"... 1360 6.5e-164 2
RGD|1310969 - symbol:Ino80 "INO80 homolog (S. cerevisiae)... 1329 1.2e-160 2
POMBASE|SPAC29B12.01 - symbol:ino80 "SNF2 family helicase... 1203 4.8e-144 2
ASPGD|ASPL0000047400 - symbol:AN2285 species:162425 "Emer... 1192 3.0e-142 2
CGD|CAL0000831 - symbol:orf19.1734 species:5476 "Candida ... 1227 3.8e-142 2
UNIPROTKB|H0YMN5 - symbol:INO80 "DNA helicase INO80" spec... 1386 9.9e-142 1
SGD|S000003118 - symbol:INO80 "ATPase and nucleosome spac... 1180 2.7e-139 2
DICTYBASE|DDB_G0292358 - symbol:ino80 "CHR group protein"... 1151 4.8e-138 3
RGD|1565642 - symbol:Srcap "Snf2-related CREBBP activator... 794 5.5e-99 3
UNIPROTKB|F1RG74 - symbol:SRCAP "Uncharacterized protein"... 794 3.2e-94 3
UNIPROTKB|Q6ZRS2 - symbol:SRCAP "Helicase SRCAP" species:... 794 1.1e-93 3
UNIPROTKB|E1BC33 - symbol:LOC788113 "Uncharacterized prot... 794 1.4e-93 3
FB|FBgn0020306 - symbol:dom "domino" species:7227 "Drosop... 799 2.3e-93 2
TAIR|locus:2087780 - symbol:PIE1 "PHOTOPERIOD-INDEPENDENT... 781 5.4e-90 2
POMBASE|SPAC11E3.01c - symbol:swr1 "SNF2 family helicase ... 739 2.8e-89 2
SGD|S000002742 - symbol:SWR1 "Swi2/Snf2-related ATPase st... 751 3.1e-89 2
WB|WBGene00007027 - symbol:ssl-1 species:6239 "Caenorhabd... 785 8.5e-89 2
DICTYBASE|DDB_G0267638 - symbol:DDB_G0267638 "CHR group p... 763 1.2e-88 2
MGI|MGI:2444036 - symbol:Srcap "Snf2-related CREBBP activ... 794 8.1e-87 2
UNIPROTKB|G3N326 - symbol:LOC788113 "Uncharacterized prot... 794 1.0e-86 2
ASPGD|ASPL0000041040 - symbol:AN9077 species:162425 "Emer... 720 2.9e-86 2
UNIPROTKB|J9PA15 - symbol:SRCAP "Uncharacterized protein"... 794 1.6e-84 2
UNIPROTKB|F6XHF3 - symbol:SRCAP "Uncharacterized protein"... 794 4.0e-84 2
UNIPROTKB|E2R6G6 - symbol:SRCAP "Uncharacterized protein"... 794 4.0e-84 2
GENEDB_PFALCIPARUM|PF08_0048 - symbol:PF08_0048 "ATP-depe... 704 3.1e-79 2
UNIPROTKB|C0H4W3 - symbol:PF08_0048 "Probable ATP-depende... 704 3.1e-79 2
SGD|S000000449 - symbol:ISW1 "ATPase subunit of imitation... 649 2.5e-78 2
CGD|CAL0001763 - symbol:orf19.1871 species:5476 "Candida ... 652 3.3e-78 2
TAIR|locus:2173644 - symbol:CHR1 "chromatin remodeling 1"... 615 5.6e-78 3
CGD|CAL0005444 - symbol:SNF2 species:5476 "Candida albica... 629 6.5e-78 3
UNIPROTKB|Q5AM49 - symbol:SNF2 "Putative uncharacterized ... 629 6.5e-78 3
DICTYBASE|DDB_G0271052 - symbol:snf2b "SNF2-related prote... 648 9.4e-78 2
POMBASE|SPAC1250.01 - symbol:snf21 "ATP-dependent DNA hel... 659 1.6e-77 2
SGD|S000001388 - symbol:STH1 "ATPase component of the RSC... 608 3.1e-77 3
CGD|CAL0003962 - symbol:orf19.239 species:5476 "Candida a... 598 4.0e-77 3
UNIPROTKB|E1BCV0 - symbol:HELLS "Uncharacterized protein"... 575 7.9e-77 3
UNIPROTKB|F1N052 - symbol:SMARCA5 "Uncharacterized protei... 561 2.9e-76 4
UNIPROTKB|E2QW28 - symbol:HELLS "Uncharacterized protein"... 574 3.6e-76 3
WB|WBGene00004204 - symbol:swsn-4 species:6239 "Caenorhab... 595 4.2e-76 2
DICTYBASE|DDB_G0285205 - symbol:snf2a "SNF2-related prote... 618 4.9e-76 3
DICTYBASE|DDB_G0292948 - symbol:isw "CHR group protein" s... 578 1.3e-75 3
WB|WBGene00016868 - symbol:C52B9.8 species:6239 "Caenorha... 616 2.7e-75 2
CGD|CAL0005422 - symbol:ISW2 species:5476 "Candida albica... 622 3.4e-75 2
UNIPROTKB|Q5A310 - symbol:ISW2 "Putative uncharacterized ... 622 3.4e-75 2
UNIPROTKB|F1P5V4 - symbol:HELLS "Uncharacterized protein"... 574 6.5e-75 3
MGI|MGI:1935127 - symbol:Smarca1 "SWI/SNF related, matrix... 575 7.0e-75 3
POMBASE|SPCC1620.14c - symbol:snf22 "ATP-dependent DNA he... 666 1.0e-74 2
UNIPROTKB|F1SC64 - symbol:HELLS "Uncharacterized protein"... 568 1.5e-74 3
UNIPROTKB|Q9NRZ9 - symbol:HELLS "Lymphoid-specific helica... 570 2.2e-74 3
UNIPROTKB|E1C0M8 - symbol:SMARCA5 "Uncharacterized protei... 567 2.4e-74 3
RGD|1308832 - symbol:Smarca5 "SWI/SNF related, matrix ass... 561 3.0e-74 3
UNIPROTKB|O60264 - symbol:SMARCA5 "SWI/SNF-related matrix... 561 3.1e-74 3
MGI|MGI:106209 - symbol:Hells "helicase, lymphoid specifi... 561 4.5e-74 3
MGI|MGI:1935129 - symbol:Smarca5 "SWI/SNF related, matrix... 558 6.5e-74 3
UNIPROTKB|E2QWV0 - symbol:SMARCA5 "Uncharacterized protei... 561 8.1e-74 3
UNIPROTKB|F1RRG9 - symbol:SMARCA5 "Uncharacterized protei... 561 8.1e-74 3
SGD|S000005831 - symbol:ISW2 "ATP-dependent DNA transloca... 609 1.9e-73 2
UNIPROTKB|F1P3Q4 - symbol:SMARCA1 "Uncharacterized protei... 559 3.3e-73 3
TAIR|locus:2150270 - symbol:CHR23 "chromatin remodeling 2... 599 4.8e-73 2
TAIR|locus:2062840 - symbol:SYD "SPLAYED" species:3702 "A... 614 5.0e-73 3
ZFIN|ZDB-GENE-021125-1 - symbol:smarca5 "SWI/SNF related,... 553 5.2e-73 3
SGD|S000005816 - symbol:SNF2 "Catalytic subunit of the SW... 614 2.1e-72 2
ASPGD|ASPL0000042729 - symbol:AN2278 species:162425 "Emer... 616 3.1e-72 2
ZFIN|ZDB-GENE-030131-9923 - symbol:hells "helicase, lymph... 572 5.7e-72 3
SGD|S000001934 - symbol:IRC5 "Putative ATPase containing ... 583 3.4e-71 3
ZFIN|ZDB-GENE-070705-296 - symbol:si:dkey-148b12.1 "si:dk... 555 5.0e-71 3
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 573 6.8e-71 2
UNIPROTKB|F6TQG2 - symbol:SMARCA1 "Probable global transc... 575 2.7e-70 2
UNIPROTKB|P28370 - symbol:SMARCA1 "Probable global transc... 575 3.9e-70 2
UNIPROTKB|K7GMM0 - symbol:SMARCA1 "Uncharacterized protei... 573 6.7e-70 2
UNIPROTKB|K7GLQ2 - symbol:SMARCA1 "Uncharacterized protei... 573 7.5e-70 2
FB|FBgn0011604 - symbol:Iswi "Imitation SWI" species:7227... 575 8.5e-70 2
UNIPROTKB|G4NCV5 - symbol:MGG_01012 "ISWI chromatin-remod... 561 9.0e-70 2
UNIPROTKB|F1N166 - symbol:SMARCA1 "Uncharacterized protei... 570 2.7e-69 2
RGD|1561046 - symbol:Smarca1 "SWI/SNF related, matrix ass... 571 3.1e-69 2
UNIPROTKB|F1RTI9 - symbol:SMARCA1 "Uncharacterized protei... 573 4.1e-69 2
UNIPROTKB|K7GNV1 - symbol:SMARCA1 "Uncharacterized protei... 573 4.8e-69 2
UNIPROTKB|Q9H4L7 - symbol:SMARCAD1 "SWI/SNF-related matri... 564 6.3e-69 3
TAIR|locus:2182978 - symbol:CHR17 "chromatin remodeling f... 574 1.1e-68 2
TAIR|locus:2041644 - symbol:CHR5 "chromatin remodeling 5"... 555 1.3e-68 2
RGD|1309640 - symbol:Smarcad1 "SWI/SNF-related, matrix-as... 565 1.6e-68 3
UNIPROTKB|Q5FWR0 - symbol:smarcad1 "SWI/SNF-related matri... 566 3.7e-68 2
ZFIN|ZDB-GENE-091113-61 - symbol:si:dkey-76p7.6 "si:dkey-... 567 3.8e-68 2
ZFIN|ZDB-GENE-050522-499 - symbol:smarcad1 "SWI/SNF-relat... 557 4.0e-68 3
UNIPROTKB|K7EMY3 - symbol:CHD5 "Chromodomain-helicase-DNA... 517 4.2e-68 2
CGD|CAL0000801 - symbol:orf19.1720 species:5476 "Candida ... 601 6.3e-68 2
UNIPROTKB|Q5AJ72 - symbol:CaO19.1720 "Putative uncharacte... 601 6.3e-68 2
UNIPROTKB|E2QVR5 - symbol:SMARCA1 "Uncharacterized protei... 564 6.4e-68 2
UNIPROTKB|J9NRN3 - symbol:CHD5 "Uncharacterized protein" ... 517 7.9e-68 2
UNIPROTKB|F2Z2R5 - symbol:CHD5 "Chromodomain-helicase-DNA... 517 8.9e-68 2
DICTYBASE|DDB_G0284171 - symbol:DDB_G0284171 "CHR group p... 552 1.3e-67 2
UNIPROTKB|E2RG62 - symbol:SMARCAD1 "Uncharacterized prote... 568 1.9e-67 2
UNIPROTKB|J9NX47 - symbol:SMARCAD1 "Uncharacterized prote... 568 1.9e-67 2
WARNING: Descriptions of 439 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 1539 (546.8 bits), Expect = 6.8e-184, Sum P(2) = 6.8e-184
Identities = 309/460 (67%), Positives = 361/460 (78%)
Query: 9 EVEKQRSQQFGSTTPSFSTEV-ERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADE 67
E E+Q + P E+ + PQP +F+G LK YQ+KGM WLAN+YDQGI+GILADE
Sbjct: 502 EEEEQAQESVEDIKPEPRPEMKDLPQPKMFKGTLKGYQIKGMTWLANIYDQGISGILADE 561
Query: 68 MGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQE 127
MGLGKTVQSIAFLCHIAE Y VWGPFL+ISPASTLHNWQQEM RFVPDFKVVPYWGSP E
Sbjct: 562 MGLGKTVQSIAFLCHIAEHYGVWGPFLVISPASTLHNWQQEMSRFVPDFKVVPYWGSPAE 621
Query: 128 RKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMR 187
RKILRQFWD K+LHT+DASFHVVITSYQLVVSD+KYFNRIKWQY++LDEAQAIKS++S R
Sbjct: 622 RKILRQFWDQKHLHTRDASFHVVITSYQLVVSDYKYFNRIKWQYMVLDEAQAIKSAASQR 681
Query: 188 WKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENK 247
WKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMP++FDSHDEFNEWFSKDIESHAENK
Sbjct: 682 WKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPTLFDSHDEFNEWFSKDIESHAENK 741
Query: 248 TSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKI 307
T IDE+ +SRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLT RQKLLY ALK+KI+I
Sbjct: 742 TGIDEKQISRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTIRQKLLYRALKQKIRI 801
Query: 308 EDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYR 367
EDL+H +SG + S++ ASNLMNLVMQFRKVCNHPELFERRDA++P M C +Y + R
Sbjct: 802 EDLLHLTSGSTTTSSSSSASNLMNLVMQFRKVCNHPELFERRDARSPFFMRCAEY-TIPR 860
Query: 368 GRQMEREEGTI---LPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDL 424
+ EEG I LP H+ + + + Y+ FE V+ ++ DL
Sbjct: 861 ---LIHEEGLIHRMLPSRKHLLYNRFNIFKSE-YIQRSLFEDVN--VNSCFGFT-RLCDL 913
Query: 425 IHSSSGGSIQLSNNIASNLMNLVMQFRKVCN-HPELFERR 463
S G ++++ N L++ ++ +R+V +P L RR
Sbjct: 914 ---SVGDMVEVTLN---GLIDFLLHYRRVLEKYPLLAYRR 947
Score = 273 (101.2 bits), Expect = 1.8e-41, Sum P(3) = 1.8e-41
Identities = 52/91 (57%), Positives = 69/91 (75%)
Query: 402 CFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 461
C Q ++ ALK+KI+IEDL+H +SG + S++ ASNLMNLVMQFRKVCNHPELFE
Sbjct: 782 CPLTIRQKLLYRALKQKIRIEDLLHLTSGSTTTSSSSSASNLMNLVMQFRKVCNHPELFE 841
Query: 462 RRDAKAPLAMSCEDYVIPKLVFEEALLCHKL 492
RRDA++P M C +Y IP+L+ EE L+ H++
Sbjct: 842 RRDARSPFFMRCAEYTIPRLIHEEGLI-HRM 871
Score = 267 (99.0 bits), Expect = 6.8e-184, Sum P(2) = 6.8e-184
Identities = 54/69 (78%), Positives = 62/69 (89%)
Query: 491 KLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
K TL+ DAGKL VLD+LL RLKA+GHRVL+YSQMTKMIDLLEE+M +RK+R+MRLDGSSK
Sbjct: 1148 KETLITDAGKLFVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSK 1207
Query: 551 ISERRDMFA 559
IS RRDM A
Sbjct: 1208 ISARRDMVA 1216
Score = 60 (26.2 bits), Expect = 2.3e-19, Sum P(3) = 2.3e-19
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 378 ILPEFPHVPRDPVILPQQPTYLPVCFFESTQNM 410
+LPEFPH PR P +P +P ++ Q +
Sbjct: 1062 LLPEFPHRPRKPRKYVCEPLSMPRILYDLGQKV 1094
Score = 37 (18.1 bits), Expect = 1.8e-41, Sum P(3) = 1.8e-41
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 269 RIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIED 309
R+ E S K ++ + LTS ++ LY L + +D
Sbjct: 87 RLLASKEERQSVKAQLYNFNDLTSDREWLYDLLLSDTESDD 127
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 1366 (485.9 bits), Expect = 6.6e-167, Sum P(3) = 6.6e-167
Identities = 249/347 (71%), Positives = 296/347 (85%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
+ + + PS + PQP +F G LK YQLKGMNWLANLY+QGINGILADEMGLGKTVQ
Sbjct: 494 ESYSLSNPSIQAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQ 553
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
SIA L H+AE ++WGPFLIISPASTL+NW QE RFVP FKV+PYWG+P +RK++R+FW
Sbjct: 554 SIALLAHLAERENIWGPFLIISPASTLNNWHQEFSRFVPKFKVLPYWGNPHDRKVIRKFW 613
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFS 195
K L+T++A FHVVITSYQLVV D KYF R+KWQY++LDEAQA+KSS+S+RWK+LL F
Sbjct: 614 SQKTLYTQNAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSTSVRWKILLQFQ 673
Query: 196 CRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHL 255
CRNRLLL+GTPIQN+MAELWALLHFIMP++FDSH+EFNEWFSKDIESHAENK++IDE L
Sbjct: 674 CRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQL 733
Query: 256 SRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSS 315
SRLHMILKPFMLRRIKKDVENELSDKIEI+ YC LTSRQ+LLY ALK KI IEDL+ SS
Sbjct: 734 SRLHMILKPFMLRRIKKDVENELSDKIEILTYCQLTSRQRLLYQALKNKISIEDLLQSSM 793
Query: 316 GGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDY 362
G S Q +++ S+LMNLVMQFRKVCNHP+LFER++ ++P MS + +
Sbjct: 794 G-SAQQAHSTTSSLMNLVMQFRKVCNHPDLFERQEIRSPFHMSLKPF 839
Score = 257 (95.5 bits), Expect = 6.6e-167, Sum P(3) = 6.6e-167
Identities = 51/69 (73%), Positives = 60/69 (86%)
Query: 491 KLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
K +L+ D+GKL LD LL RLK+ GHRVL+YSQMT+MIDLLEE+MVYRK+ +MRLDGSSK
Sbjct: 1124 KESLITDSGKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1183
Query: 551 ISERRDMFA 559
ISERRDM A
Sbjct: 1184 ISERRDMVA 1192
Score = 233 (87.1 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 52/115 (45%), Positives = 72/115 (62%)
Query: 399 LPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPE 458
L C S Q ++ ALK KI IEDL+ SS G S Q +++ S+LMNLVMQFRKVCNHP+
Sbjct: 763 LTYCQLTSRQRLLYQALKNKISIEDLLQSSMG-SAQQAHSTTSSLMNLVMQFRKVCNHPD 821
Query: 459 LFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRLKA 513
LFER++ ++P MS + +++ K +F A+L H + D GK + LL A
Sbjct: 822 LFERQEIRSPFHMSLKPFIMSKFLFRHAIL-HTI----DHGKTKLKQTLLSPFSA 871
Score = 41 (19.5 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 197 RNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAE-NKTSIDERHL 255
R RLL ++N ++ + LL M S +H + + ++ N + ER
Sbjct: 771 RQRLLYQA--LKNKIS-IEDLLQSSMGSAQQAHSTTSSLMNLVMQFRKVCNHPDLFERQE 827
Query: 256 SR--LHMILKPFMLRR 269
R HM LKPF++ +
Sbjct: 828 IRSPFHMSLKPFIMSK 843
Score = 38 (18.4 bits), Expect = 6.6e-167, Sum P(3) = 6.6e-167
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 355 LAMSCEDYHRLYRGRQMEREE 375
L +S + +RL+ RQ E E+
Sbjct: 918 LYLSFKSAYRLHHSRQWEEEK 938
Score = 38 (18.4 bits), Expect = 8.0e-144, Sum P(3) = 8.0e-144
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 531 LEEFMVYRKYRFMRLDGSSKISERR 555
LE+ + R+ +L+ SSK+ ER+
Sbjct: 1305 LEKKLRLRQEEKRQLEESSKVKERK 1329
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 1386 (493.0 bits), Expect = 1.2e-166, Sum P(2) = 1.2e-166
Identities = 255/348 (73%), Positives = 295/348 (84%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
+ + PS + PQP +F G LK YQLKGMNWLANLY+QGINGILADEMGLGKTVQ
Sbjct: 493 ESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQ 552
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
SIA L H+AE ++WGPFLIISPASTL+NW QE RFVP FKV+PYWG+P +RK++R+FW
Sbjct: 553 SIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFW 612
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFS 195
K L+T+DA FHVVITSYQLVV D KYF R+KWQY++LDEAQA+KSSSS+RWK+LL F
Sbjct: 613 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQ 672
Query: 196 CRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHL 255
CRNRLLL+GTPIQN+MAELWALLHFIMP++FDSH+EFNEWFSKDIESHAENK++IDE L
Sbjct: 673 CRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQL 732
Query: 256 SRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSS 315
SRLHMILKPFMLRRIKKDVENELSDKIEI++YC LTSRQKLLY ALK KI IEDL+ SS
Sbjct: 733 SRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSM 792
Query: 316 GGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYH 363
G S Q + N S+LMNLVMQFRKVCNHPELFER++ +P +S + YH
Sbjct: 793 G-STQQAQNTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYH 839
Score = 257 (95.5 bits), Expect = 1.2e-166, Sum P(2) = 1.2e-166
Identities = 51/69 (73%), Positives = 60/69 (86%)
Query: 491 KLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
K +L+ D+GKL LD LL RLK+ GHRVL+YSQMT+MIDLLEE+MVYRK+ +MRLDGSSK
Sbjct: 1093 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1152
Query: 551 ISERRDMFA 559
ISERRDM A
Sbjct: 1153 ISERRDMVA 1161
Score = 214 (80.4 bits), Expect = 2.3e-35, Sum P(3) = 2.3e-35
Identities = 45/85 (52%), Positives = 57/85 (67%)
Query: 399 LPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPE 458
L C S Q ++ ALK KI IEDL+ SS G S Q + N S+LMNLVMQFRKVCNHPE
Sbjct: 762 LMYCQLTSRQKLLYQALKNKISIEDLLQSSMG-STQQAQNTTSSLMNLVMQFRKVCNHPE 820
Query: 459 LFERRDAKAPLAMSCEDYVIPKLVF 483
LFER++ +P +S + Y I K ++
Sbjct: 821 LFERQETWSPFHISLKPYHISKFIY 845
Score = 48 (22.0 bits), Expect = 2.3e-35, Sum P(3) = 2.3e-35
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 237 SKDIESHAENKTSIDERHLSR--LHMILKPFMLRRIKKDVENELSDKIEIM--------- 285
S + +S +E+ +E +LSR LH +L+ L + KK +N+ S E+
Sbjct: 135 SSEADSQSEDDDE-EELNLSREELHNMLR---LHKYKKLHQNKYSKDKELQQYQYYSAGL 190
Query: 286 --VYCPLTSRQKLLYSALKKKIKIE 308
Y P +Q+ L KKK K E
Sbjct: 191 LSTYDPFYEQQRHLLGPKKKKFKEE 215
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 1377 (489.8 bits), Expect = 1.0e-165, Sum P(2) = 1.0e-165
Identities = 254/347 (73%), Positives = 293/347 (84%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
+ + PS + PQP +F G LK YQLKGMNWLANLY+QGINGILADEMGLGKTVQ
Sbjct: 495 ESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQ 554
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
SIA L H+AE ++WGPFLIISPASTL+NW QE RFVP FKV+PYWG+P +RK++R+FW
Sbjct: 555 SIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFW 614
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFS 195
K L+T+DA FHVVITSYQLVV D KYF R+KWQY++LDEAQA+KSSSS+RWK+LL F
Sbjct: 615 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQ 674
Query: 196 CRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHL 255
CRNRLLL+GTPIQN+MAELWALLHFIMP++FDSH+EFNEWFSKDIESHAENK++IDE L
Sbjct: 675 CRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQL 734
Query: 256 SRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSS 315
SRLHMILKPFMLRRIKKDVENELSDKIEI+ YC LTSRQKLLY ALK KI IEDL+ SS
Sbjct: 735 SRLHMILKPFMLRRIKKDVENELSDKIEILTYCQLTSRQKLLYQALKNKISIEDLLQSSM 794
Query: 316 GGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDY 362
G S Q + N S+LMNLVMQFRKVCNHPELFER++ +P +S + Y
Sbjct: 795 G-STQQAQNTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPY 840
Score = 257 (95.5 bits), Expect = 1.0e-165, Sum P(2) = 1.0e-165
Identities = 51/69 (73%), Positives = 60/69 (86%)
Query: 491 KLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
K +L+ D+GKL LD LL RLK+ GHRVL+YSQMT+MIDLLEE+MVYRK+ +MRLDGSSK
Sbjct: 1096 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1155
Query: 551 ISERRDMFA 559
ISERRDM A
Sbjct: 1156 ISERRDMVA 1164
Score = 216 (81.1 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 45/85 (52%), Positives = 57/85 (67%)
Query: 399 LPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPE 458
L C S Q ++ ALK KI IEDL+ SS G S Q + N S+LMNLVMQFRKVCNHPE
Sbjct: 764 LTYCQLTSRQKLLYQALKNKISIEDLLQSSMG-STQQAQNTTSSLMNLVMQFRKVCNHPE 822
Query: 459 LFERRDAKAPLAMSCEDYVIPKLVF 483
LFER++ +P +S + Y I K ++
Sbjct: 823 LFERQETWSPFHISLKPYEISKFIY 847
Score = 48 (22.0 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 27/87 (31%), Positives = 39/87 (44%)
Query: 237 SKDIESHAE-NKTSIDERHLSR--LHMILKPFMLRRIKKDVENELSDKIEIM-------- 285
S + +S +E N +E LSR LH +L+ L + KK +N+ S E+
Sbjct: 135 SSEADSQSEDNDDEEEELSLSREELHNMLR---LHKYKKLHQNKYSKDKELQQYQYYSAG 191
Query: 286 ---VYCPLTSRQKLLYSALKKKIKIED 309
Y P +Q+ L KKK K ED
Sbjct: 192 LLSTYDPFYEQQRHLLGPKKKKFK-ED 217
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 1372 (488.0 bits), Expect = 3.5e-165, Sum P(2) = 3.5e-165
Identities = 253/347 (72%), Positives = 293/347 (84%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
+ + PS + PQP +F G LK YQLKGMNWLANLY+QGINGILADEMGLGKTVQ
Sbjct: 502 ESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQ 561
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
SIA L H+AE ++WGPFLIISPASTL+NW QE RFVP FKV+PYWG+P +RK++R+FW
Sbjct: 562 SIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFW 621
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFS 195
K L+T+DA FHVVITSYQLVV D KYF R+KWQY++LDEAQA+KSSSS+RWK+LL F
Sbjct: 622 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQ 681
Query: 196 CRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHL 255
CRNRLLL+GTPIQN+MAELWALLHFIMP++FDSH+EFNEWFSKDIESHAENK++IDE L
Sbjct: 682 CRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQL 741
Query: 256 SRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSS 315
SRLHMILKPFMLRRIKKDVENELSDKIEI++YC LTSRQKLLY ALK KI IEDL+ SS
Sbjct: 742 SRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSM 801
Query: 316 GGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDY 362
G S Q + S+LMNLVMQFRKVCNHPELFER++ +P +S + Y
Sbjct: 802 G-STQQAQTTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPY 847
Score = 257 (95.5 bits), Expect = 3.5e-165, Sum P(2) = 3.5e-165
Identities = 51/69 (73%), Positives = 60/69 (86%)
Query: 491 KLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
K +L+ D+GKL LD LL RLK+ GHRVL+YSQMT+MIDLLEE+MVYRK+ +MRLDGSSK
Sbjct: 1103 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1162
Query: 551 ISERRDMFA 559
ISERRDM A
Sbjct: 1163 ISERRDMVA 1171
Score = 209 (78.6 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 44/85 (51%), Positives = 56/85 (65%)
Query: 399 LPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPE 458
L C S Q ++ ALK KI IEDL+ SS G S Q + S+LMNLVMQFRKVCNHPE
Sbjct: 771 LMYCQLTSRQKLLYQALKNKISIEDLLQSSMG-STQQAQTTTSSLMNLVMQFRKVCNHPE 829
Query: 459 LFERRDAKAPLAMSCEDYVIPKLVF 483
LFER++ +P +S + Y I K ++
Sbjct: 830 LFERQETWSPFHISLKPYQISKFIY 854
Score = 60 (26.2 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 28/89 (31%), Positives = 37/89 (41%)
Query: 227 DSHDEFN-EWFSKDIESHAENKTSIDERH-LSRLHMILKPFMLRRIKKDVENELSDKIE- 283
DSH E N E +D + E S ++ H + RLH K L + K E EL
Sbjct: 139 DSHSEDNDEGEEEDDDEEEELSLSREDLHNMLRLHKYKK---LHQNKYSKEKELQQYQYY 195
Query: 284 ----IMVYCPLTSRQKLLYSALKKKIKIE 308
+ Y P +Q+ L KKK K E
Sbjct: 196 SAGLLSTYDPFYEQQRHLLGPKKKKFKEE 224
Score = 49 (22.3 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 22/79 (27%), Positives = 38/79 (48%)
Query: 347 ERRDAKAPLAMSCEDYH---RLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCF 403
E D + L++S ED H RL++ +++ + + + E L TY P F
Sbjct: 151 EDDDEEEELSLSREDLHNMLRLHKYKKLHQNKYSKEKELQQYQYYSAGLLS--TYDP--F 206
Query: 404 FESTQNMVSPALKKKIKIE 422
+E ++++ P KKK K E
Sbjct: 207 YEQQRHLLGPK-KKKFKEE 224
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 1372 (488.0 bits), Expect = 3.5e-165, Sum P(2) = 3.5e-165
Identities = 253/347 (72%), Positives = 293/347 (84%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
+ + PS + PQP +F G LK YQLKGMNWLANLY+QGINGILADEMGLGKTVQ
Sbjct: 502 ESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQ 561
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
SIA L H+AE ++WGPFLIISPASTL+NW QE RFVP FKV+PYWG+P +RK++R+FW
Sbjct: 562 SIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFW 621
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFS 195
K L+T+DA FHVVITSYQLVV D KYF R+KWQY++LDEAQA+KSSSS+RWK+LL F
Sbjct: 622 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQ 681
Query: 196 CRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHL 255
CRNRLLL+GTPIQN+MAELWALLHFIMP++FDSH+EFNEWFSKDIESHAENK++IDE L
Sbjct: 682 CRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQL 741
Query: 256 SRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSS 315
SRLHMILKPFMLRRIKKDVENELSDKIEI++YC LTSRQKLLY ALK KI IEDL+ SS
Sbjct: 742 SRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSM 801
Query: 316 GGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDY 362
G S Q + S+LMNLVMQFRKVCNHPELFER++ +P +S + Y
Sbjct: 802 G-STQQAQTTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPY 847
Score = 257 (95.5 bits), Expect = 3.5e-165, Sum P(2) = 3.5e-165
Identities = 51/69 (73%), Positives = 60/69 (86%)
Query: 491 KLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
K +L+ D+GKL LD LL RLK+ GHRVL+YSQMT+MIDLLEE+MVYRK+ +MRLDGSSK
Sbjct: 1103 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1162
Query: 551 ISERRDMFA 559
ISERRDM A
Sbjct: 1163 ISERRDMVA 1171
Score = 209 (78.6 bits), Expect = 2.7e-36, Sum P(3) = 2.7e-36
Identities = 44/85 (51%), Positives = 56/85 (65%)
Query: 399 LPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPE 458
L C S Q ++ ALK KI IEDL+ SS G S Q + S+LMNLVMQFRKVCNHPE
Sbjct: 771 LMYCQLTSRQKLLYQALKNKISIEDLLQSSMG-STQQAQTTTSSLMNLVMQFRKVCNHPE 829
Query: 459 LFERRDAKAPLAMSCEDYVIPKLVF 483
LFER++ +P +S + Y I K ++
Sbjct: 830 LFERQETWSPFHISLKPYQISKFIY 854
Score = 62 (26.9 bits), Expect = 2.7e-36, Sum P(3) = 2.7e-36
Identities = 27/87 (31%), Positives = 35/87 (40%)
Query: 227 DSHDEFNEWFSKDIESHAEN-KTSIDERH-LSRLHMILKPFMLRRIKKDVENELSDKIE- 283
DS E NE +D E E S +E H + RLH K + KD E +
Sbjct: 139 DSQSEDNEEEEEDDEEEEEELNLSREELHNMLRLHKY-KKLHQNKYSKDKELQQYQYYSA 197
Query: 284 --IMVYCPLTSRQKLLYSALKKKIKIE 308
+ Y P +Q+ L KKK K E
Sbjct: 198 GLLSTYDPFYEQQRHLLGPKKKKFKEE 224
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 1372 (488.0 bits), Expect = 3.5e-165, Sum P(2) = 3.5e-165
Identities = 253/347 (72%), Positives = 293/347 (84%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
+ + PS + PQP +F G LK YQLKGMNWLANLY+QGINGILADEMGLGKTVQ
Sbjct: 496 ESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQ 555
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
SIA L H+AE ++WGPFLIISPASTL+NW QE RFVP FKV+PYWG+P +RK++R+FW
Sbjct: 556 SIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFW 615
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFS 195
K L+T+DA FHVVITSYQLVV D KYF R+KWQY++LDEAQA+KSSSS+RWK+LL F
Sbjct: 616 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQ 675
Query: 196 CRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHL 255
CRNRLLL+GTPIQN+MAELWALLHFIMP++FDSH+EFNEWFSKDIESHAENK++IDE L
Sbjct: 676 CRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQL 735
Query: 256 SRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSS 315
SRLHMILKPFMLRRIKKDVENELSDKIEI++YC LTSRQKLLY ALK KI IEDL+ SS
Sbjct: 736 SRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSM 795
Query: 316 GGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDY 362
G S Q + S+LMNLVMQFRKVCNHPELFER++ +P +S + Y
Sbjct: 796 G-STQQAQTTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPY 841
Score = 257 (95.5 bits), Expect = 3.5e-165, Sum P(2) = 3.5e-165
Identities = 51/69 (73%), Positives = 60/69 (86%)
Query: 491 KLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
K +L+ D+GKL LD LL RLK+ GHRVL+YSQMT+MIDLLEE+MVYRK+ +MRLDGSSK
Sbjct: 1097 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1156
Query: 551 ISERRDMFA 559
ISERRDM A
Sbjct: 1157 ISERRDMVA 1165
Score = 209 (78.6 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 44/85 (51%), Positives = 56/85 (65%)
Query: 399 LPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPE 458
L C S Q ++ ALK KI IEDL+ SS G S Q + S+LMNLVMQFRKVCNHPE
Sbjct: 765 LMYCQLTSRQKLLYQALKNKISIEDLLQSSMG-STQQAQTTTSSLMNLVMQFRKVCNHPE 823
Query: 459 LFERRDAKAPLAMSCEDYVIPKLVF 483
LFER++ +P +S + Y I K ++
Sbjct: 824 LFERQETWSPFHISLKPYQISKFIY 848
Score = 54 (24.1 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 28/92 (30%), Positives = 42/92 (45%)
Query: 230 DEFNEWFSKDIESHAENKTSIDERHLSR--LHMILKPFMLRRIKKDVENELSDKIEIM-- 285
DE +E S+ ++ E + +E HLSR LH +L+ L + KK +N+ S E+
Sbjct: 133 DESSEADSQSEDNEEEEE---EELHLSREELHNMLR---LHKYKKLHQNKYSKDKELQQY 186
Query: 286 ---------VYCPLTSRQKLLYSALKKKIKIE 308
Y P +Q+ L KKK K E
Sbjct: 187 QYYSAGLLSTYDPFYEQQRHLLGPKKKKFKEE 218
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 1360 (483.8 bits), Expect = 6.5e-164, Sum P(2) = 6.5e-164
Identities = 250/347 (72%), Positives = 292/347 (84%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
+ + PS + PQP +F G LK YQLKGMNWLANLY+QGINGILADEMGLGKTVQ
Sbjct: 498 ESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQ 557
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
SIA L H+AE ++WGPFLIISPASTL+NW QE RFVP FKV+PYWG+P +RK++R+FW
Sbjct: 558 SIALLAHLAERENIWGPFLIISPASTLNNWHQEFARFVPKFKVLPYWGNPHDRKVIRKFW 617
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFS 195
K L+T+DA FHVVITSYQLVV D KYF R+KWQY++LDEAQA+KSSSS+RWK+LL F
Sbjct: 618 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQ 677
Query: 196 CRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHL 255
CRNRLLL+GTPIQN+MAELWALLHFIMP++FDSH+EFNEWFSKDIESHAENK++IDE L
Sbjct: 678 CRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQL 737
Query: 256 SRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSS 315
SRLHMILKPFMLRRIKKDVENELSDKIEI++YC TSRQKLLY ALK KI I+DL+ SS
Sbjct: 738 SRLHMILKPFMLRRIKKDVENELSDKIEILMYCQQTSRQKLLYQALKNKISIDDLLQSSM 797
Query: 316 GGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDY 362
G + Q + S+LMNLVMQFRKVCNHPELFER++ +P +S + Y
Sbjct: 798 G-TTQQAQTTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPY 843
Score = 257 (95.5 bits), Expect = 6.5e-164, Sum P(2) = 6.5e-164
Identities = 51/69 (73%), Positives = 60/69 (86%)
Query: 491 KLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
K +L+ D+GKL LD LL RLK+ GHRVL+YSQMT+MIDLLEE+MVYRK+ +MRLDGSSK
Sbjct: 1101 KESLITDSGKLHALDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1160
Query: 551 ISERRDMFA 559
ISERRDM A
Sbjct: 1161 ISERRDMVA 1169
Score = 200 (75.5 bits), Expect = 6.6e-34, Sum P(3) = 6.6e-34
Identities = 42/85 (49%), Positives = 56/85 (65%)
Query: 399 LPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPE 458
L C S Q ++ ALK KI I+DL+ SS G + Q + S+LMNLVMQFRKVCNHPE
Sbjct: 767 LMYCQQTSRQKLLYQALKNKISIDDLLQSSMG-TTQQAQTTTSSLMNLVMQFRKVCNHPE 825
Query: 459 LFERRDAKAPLAMSCEDYVIPKLVF 483
LFER++ +P +S + Y I K ++
Sbjct: 826 LFERQETWSPFHISLKPYPISKFIY 850
Score = 48 (22.0 bits), Expect = 6.6e-34, Sum P(3) = 6.6e-34
Identities = 22/75 (29%), Positives = 30/75 (40%)
Query: 238 KDIESHAENKTSIDERH-LSRLHMILKPFMLRRIKKDVENELSDKIE---IMVYCPLTSR 293
+D E E S +E H + RLH K + KD E + + Y P +
Sbjct: 147 EDGEDEEEFSLSREELHNMLRLHKY-KKLHQSKYSKDKELQQYQYYSAGLLSTYDPYYEQ 205
Query: 294 QKLLYSALKKKIKIE 308
Q+ L KKK K E
Sbjct: 206 QRHLLGPKKKKFKEE 220
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 1329 (472.9 bits), Expect = 1.2e-160, Sum P(2) = 1.2e-160
Identities = 251/347 (72%), Positives = 288/347 (82%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
+ + PS + PQP +F G LK YQLKGMNWLANLY+QGINGILADEMGLGKTVQ
Sbjct: 495 ESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQ 554
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
SIA L H+AE ++WGPFLIISPASTL+NW QE RFVP FKV+PYWG+P +RK
Sbjct: 555 SIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRK------ 608
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFS 195
K L+T+DA FHVVITSYQLVV D KYF R+KWQY++LDEAQA+KSSSS+RWK+LL F
Sbjct: 609 KKKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQ 668
Query: 196 CRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHL 255
CRNRLLL+GTPIQN+MAELWALLHFIMP++FDSH+EFNEWFSKDIESHAENK++IDE L
Sbjct: 669 CRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQL 728
Query: 256 SRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSS 315
SRLHMILKPFMLRRIKKDVENELSDKIEI++YC LTSRQKLLY ALK KI IEDL+ SS
Sbjct: 729 SRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSM 788
Query: 316 GGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDY 362
G S Q + N S+LMNLVMQFRKVCNHPELFER++ +P +S + Y
Sbjct: 789 G-STQQAQNTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPY 834
Score = 257 (95.5 bits), Expect = 1.2e-160, Sum P(2) = 1.2e-160
Identities = 51/69 (73%), Positives = 60/69 (86%)
Query: 491 KLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
K +L+ D+GKL LD LL RLK+ GHRVL+YSQMT+MIDLLEE+MVYRK+ +MRLDGSSK
Sbjct: 1090 KESLITDSGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1149
Query: 551 ISERRDMFA 559
ISERRDM A
Sbjct: 1150 ISERRDMVA 1158
Score = 215 (80.7 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 45/85 (52%), Positives = 57/85 (67%)
Query: 399 LPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPE 458
L C S Q ++ ALK KI IEDL+ SS G S Q + N S+LMNLVMQFRKVCNHPE
Sbjct: 758 LMYCQLTSRQKLLYQALKNKISIEDLLQSSMG-STQQAQNTTSSLMNLVMQFRKVCNHPE 816
Query: 459 LFERRDAKAPLAMSCEDYVIPKLVF 483
LFER++ +P +S + Y I K ++
Sbjct: 817 LFERQETWSPFHISLKPYEISKFIY 841
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 1203 (428.5 bits), Expect = 4.8e-144, Sum P(2) = 4.8e-144
Identities = 220/337 (65%), Positives = 278/337 (82%)
Query: 23 PSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCH 82
P+ E QP + LK YQLKG+NWLANLY+QGINGILADEMGLGKTVQSI+ + +
Sbjct: 824 PTLVNAFEVKQPKMLMCKLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVMAY 883
Query: 83 IAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNL-H 141
+AET+++WGPFL+I+PASTLHNWQQE+ RFVP K +PYWGS ++RKILR+FW KN+ +
Sbjct: 884 LAETHNIWGPFLVIAPASTLHNWQQEITRFVPKLKCIPYWGSTKDRKILRKFWCRKNMTY 943
Query: 142 TKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLL 201
+++ FHVV+TSYQLVV D +YF +KWQY+ILDEAQAIKSSSS RWK LL F CRNRLL
Sbjct: 944 DENSPFHVVVTSYQLVVLDAQYFQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLL 1003
Query: 202 LSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMI 261
L+GTPIQN+M ELWALLHFIMPS+FDSH+EF+EWFSKDIESHA++ T ++E+ L RLHMI
Sbjct: 1004 LTGTPIQNTMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAQSNTQLNEQQLKRLHMI 1063
Query: 262 LKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQL 321
LKPFMLRR+KK+V++EL +KIE VYC LT RQK+LY AL+++I I +L+ + G
Sbjct: 1064 LKPFMLRRVKKNVQSELGEKIEKEVYCDLTQRQKILYQALRRQISIAELLEKAILGG--- 1120
Query: 322 SNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMS 358
+ +AS +MNLVMQFRKVCNHP+LFER D ++PL+++
Sbjct: 1121 DDTVAS-IMNLVMQFRKVCNHPDLFEREDVRSPLSLA 1156
Score = 226 (84.6 bits), Expect = 4.8e-144, Sum P(2) = 4.8e-144
Identities = 42/66 (63%), Positives = 56/66 (84%)
Query: 492 LTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKI 551
L + D+GKLS LD LL LKA+ HRVL+Y QMT+MIDL+EE++ +R+Y+++RLDGSSKI
Sbjct: 1422 LRFIADSGKLSKLDKLLVELKANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKI 1481
Query: 552 SERRDM 557
S+RRDM
Sbjct: 1482 SQRRDM 1487
Score = 154 (59.3 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 31/71 (43%), Positives = 48/71 (67%)
Query: 402 CFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 461
C Q ++ AL+++I I +L+ + G + +AS +MNLVMQFRKVCNHP+LFE
Sbjct: 1090 CDLTQRQKILYQALRRQISIAELLEKAILGG---DDTVAS-IMNLVMQFRKVCNHPDLFE 1145
Query: 462 RRDAKAPLAMS 472
R D ++PL+++
Sbjct: 1146 REDVRSPLSLA 1156
Score = 37 (18.1 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 344 ELFE-RRDA-KAPLAMSCEDYHRLYRGRQMEREE 375
EL E RR A K ++ + + + GR+M+RE+
Sbjct: 720 ELRESRRQARKLDFLITQTELYSHFVGRKMDREQ 753
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 1192 (424.7 bits), Expect = 3.0e-142, Sum P(2) = 3.0e-142
Identities = 213/337 (63%), Positives = 276/337 (81%)
Query: 23 PSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCH 82
P+ ++E QP + LK YQLKG+NWL NLY+QGINGILADEMGLGKT+QSI+ + +
Sbjct: 780 PTSLGDIEISQPTMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAY 839
Query: 83 IAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNL-H 141
+AE +++WGPFL+I+PASTLHNWQQE+ +FVP+ KV+PYWG+ ++RKILR+FWD K++ +
Sbjct: 840 LAEVHNIWGPFLVIAPASTLHNWQQEITKFVPNIKVLPYWGNAKDRKILRKFWDRKHITY 899
Query: 142 TKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLL 201
TK++ FHV++TSYQLVV D +YF ++KWQY+ILDEAQAIKSS S RWK LLGF CRNRLL
Sbjct: 900 TKESEFHVLVTSYQLVVLDAQYFQKVKWQYMILDEAQAIKSSQSSRWKSLLGFHCRNRLL 959
Query: 202 LSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMI 261
L+GTPIQN+M ELWALLHFIMP++FDSHDEF+EWFSKDIESHA++ T ++E L RLHMI
Sbjct: 960 LTGTPIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMI 1019
Query: 262 LKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQL 321
LKPFMLRR+KK V+ EL DK+E V+C LT RQ+ LY+ L+ ++ I DLI ++ G
Sbjct: 1020 LKPFMLRRVKKHVQQELGDKVEKDVFCDLTYRQRALYTNLRNRVSIMDLIEKAAVGD--- 1076
Query: 322 SNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMS 358
++ LMNLVMQFRKVCNHP+LFER + K+P +++
Sbjct: 1077 -ETDSTTLMNLVMQFRKVCNHPDLFERAETKSPFSLA 1112
Score = 220 (82.5 bits), Expect = 3.0e-142, Sum P(2) = 3.0e-142
Identities = 40/65 (61%), Positives = 54/65 (83%)
Query: 495 VYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISER 554
V D+GKL+ LD+LL+ LKA GHRVL+Y QMT+MIDL+EE++ YR Y++ RLDGS+K+ +R
Sbjct: 1317 VTDSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1376
Query: 555 RDMFA 559
RD A
Sbjct: 1377 RDTVA 1381
Score = 141 (54.7 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 402 CFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 461
C Q + L+ ++ I DLI ++ G ++ LMNLVMQFRKVCNHP+LFE
Sbjct: 1046 CDLTYRQRALYTNLRNRVSIMDLIEKAAVGD----ETDSTTLMNLVMQFRKVCNHPDLFE 1101
Query: 462 RRDAKAPLAMS 472
R + K+P +++
Sbjct: 1102 RAETKSPFSLA 1112
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 1227 (437.0 bits), Expect = 3.8e-142, Sum P(2) = 3.8e-142
Identities = 225/358 (62%), Positives = 286/358 (79%)
Query: 2 DNVRHAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGIN 61
DN + + ++ P+ ++ PQP + + LK YQLKG+NWLANLY+QGIN
Sbjct: 633 DNSEESFKNPDTNGEEMNFQNPTLLGDITIPQPNMLKCTLKEYQLKGLNWLANLYEQGIN 692
Query: 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121
GILADEMGLGKTVQSI+ L ++AETY++WGPFL+++PASTLHNWQQE+ +FVP+FKV+PY
Sbjct: 693 GILADEMGLGKTVQSISVLAYLAETYNMWGPFLVVTPASTLHNWQQEITKFVPEFKVLPY 752
Query: 122 WGSPQERKILRQFWDMKNL-HTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 180
WG+ ++RKILR+FWD K+L + KD+ FHV++TSYQL+V+D YF ++KWQY+ILDEAQAI
Sbjct: 753 WGNAKDRKILRKFWDRKSLRYDKDSPFHVLVTSYQLIVADIAYFQKMKWQYMILDEAQAI 812
Query: 181 KSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI 240
KSSSS RWK LL +CRNRLLL+GTPIQNSM ELWALLHFIMPS+FDSHDEF++WF+KDI
Sbjct: 813 KSSSSSRWKSLLNLTCRNRLLLTGTPIQNSMQELWALLHFIMPSIFDSHDEFSDWFAKDI 872
Query: 241 ESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSA 300
ESHA++ TS+DE+ L RLHMILKPFMLRRIKK+V++EL DK+EI VYC LT+RQK LY
Sbjct: 873 ESHAQSNTSLDEQQLRRLHMILKPFMLRRIKKNVQSELGDKVEIDVYCDLTTRQKKLYQQ 932
Query: 301 LKKKIKIED--LIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLA 356
L+ +I + D L+ S S + S+L NLVMQFRKVCNHP+LFER D +P +
Sbjct: 933 LRSQISMSDTDLLELESN-----STSSDSSLANLVMQFRKVCNHPDLFERADVNSPFS 985
Score = 184 (69.8 bits), Expect = 3.8e-142, Sum P(2) = 3.8e-142
Identities = 38/102 (37%), Positives = 66/102 (64%)
Query: 458 ELFERRDAKAPLAMSCEDYVIPKLVFEEA-LLCHKLT-LVYDAGKLSVLDDLLKRLKASG 515
EL +D + PL + ++P +F+ + + + + ++GKL+ LD+LL LK G
Sbjct: 1194 ELKLMKD-QIPLEQYPKSNMLPMPIFDYSNIRMPSMDRFIAESGKLAKLDELLIDLKRGG 1252
Query: 516 HRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM 557
HR+L+Y QMT+M+ + EE++ Y+ Y+++RLDGS+ I RR+M
Sbjct: 1253 HRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRREM 1294
Score = 123 (48.4 bits), Expect = 7.5e-18, Sum P(2) = 7.5e-18
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 402 CFFESTQNMVSPALKKKIKIED--LIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPEL 459
C + Q + L+ +I + D L+ S S + S+L NLVMQFRKVCNHP+L
Sbjct: 920 CDLTTRQKKLYQQLRSQISMSDTDLLELESN-----STSSDSSLANLVMQFRKVCNHPDL 974
Query: 460 FERRDAKAPLA 470
FER D +P +
Sbjct: 975 FERADVNSPFS 985
>UNIPROTKB|H0YMN5 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR020838 Pfam:PF00176 Pfam:PF13892 PROSITE:PS51413
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AC020661 GO:GO:0016817 ChiTaRS:INO80
HGNC:HGNC:26956 EMBL:AC021753 ProteinModelPortal:H0YMN5 SMR:H0YMN5
Ensembl:ENST00000558357 Bgee:H0YMN5 Uniprot:H0YMN5
Length = 1104
Score = 1386 (493.0 bits), Expect = 9.9e-142, P = 9.9e-142
Identities = 255/348 (73%), Positives = 295/348 (84%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
+ + PS + PQP +F G LK YQLKGMNWLANLY+QGINGILADEMGLGKTVQ
Sbjct: 493 ESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQ 552
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
SIA L H+AE ++WGPFLIISPASTL+NW QE RFVP FKV+PYWG+P +RK++R+FW
Sbjct: 553 SIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFW 612
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFS 195
K L+T+DA FHVVITSYQLVV D KYF R+KWQY++LDEAQA+KSSSS+RWK+LL F
Sbjct: 613 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQ 672
Query: 196 CRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHL 255
CRNRLLL+GTPIQN+MAELWALLHFIMP++FDSH+EFNEWFSKDIESHAENK++IDE L
Sbjct: 673 CRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQL 732
Query: 256 SRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSS 315
SRLHMILKPFMLRRIKKDVENELSDKIEI++YC LTSRQKLLY ALK KI IEDL+ SS
Sbjct: 733 SRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSM 792
Query: 316 GGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYH 363
G S Q + N S+LMNLVMQFRKVCNHPELFER++ +P +S + YH
Sbjct: 793 G-STQQAQNTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYH 839
Score = 214 (80.4 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 45/85 (52%), Positives = 57/85 (67%)
Query: 399 LPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPE 458
L C S Q ++ ALK KI IEDL+ SS G S Q + N S+LMNLVMQFRKVCNHPE
Sbjct: 762 LMYCQLTSRQKLLYQALKNKISIEDLLQSSMG-STQQAQNTTSSLMNLVMQFRKVCNHPE 820
Query: 459 LFERRDAKAPLAMSCEDYVIPKLVF 483
LFER++ +P +S + Y I K ++
Sbjct: 821 LFERQETWSPFHISLKPYHISKFIY 845
Score = 48 (22.0 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 237 SKDIESHAENKTSIDERHLSR--LHMILKPFMLRRIKKDVENELSDKIEIM--------- 285
S + +S +E+ +E +LSR LH +L+ L + KK +N+ S E+
Sbjct: 135 SSEADSQSEDDDE-EELNLSREELHNMLR---LHKYKKLHQNKYSKDKELQQYQYYSAGL 190
Query: 286 --VYCPLTSRQKLLYSALKKKIKIE 308
Y P +Q+ L KKK K E
Sbjct: 191 LSTYDPFYEQQRHLLGPKKKKFKEE 215
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 1180 (420.4 bits), Expect = 2.7e-139, Sum P(2) = 2.7e-139
Identities = 221/360 (61%), Positives = 275/360 (76%)
Query: 6 HA-VEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGIL 64
HA E++ + P+ E+ QP + LK YQLKG+NWLANLYDQGINGIL
Sbjct: 670 HANAHEEEEEEDELNFQNPTSLGEITIEQPKILACTLKEYQLKGLNWLANLYDQGINGIL 729
Query: 65 ADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGS 124
ADEMGLGKTVQSI+ L H+AE +++WGPFL+++PASTLHNW E+ +F+P FK++PYWG+
Sbjct: 730 ADEMGLGKTVQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNEISKFLPQFKILPYWGN 789
Query: 125 PQERKILRQFWDMKNL-HTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSS 183
+RK+LR+FWD KNL + K+A FHV++TSYQ+VV+D Y ++KWQY+ILDEAQAIKSS
Sbjct: 790 ANDRKVLRKFWDRKNLRYNKNAPFHVMVTSYQMVVTDANYLQKMKWQYMILDEAQAIKSS 849
Query: 184 SSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESH 243
S RWK LL F CRNRLLL+GTPIQNSM ELWALLHFIMPS+FDSHDEFNEWFSKDIESH
Sbjct: 850 QSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHDEFNEWFSKDIESH 909
Query: 244 AENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKK 303
AE T ++++ L RLHMILKPFMLRR+KK+V++EL DKIEI V C LT RQ LY LK
Sbjct: 910 AEANTKLNQQQLRRLHMILKPFMLRRVKKNVQSELGDKIEIDVLCDLTQRQAKLYQVLKS 969
Query: 304 KIKIE-DLIHSSSGG---SIQLSNNIAS-NLMNLVMQFRKVCNHPELFERRDAKAPLAMS 358
+I D I +++ S SN+ + NL+N VMQFRKVCNHP+LFER D +P + +
Sbjct: 970 QISTNYDAIENAATNDSTSNSASNSGSDQNLINAVMQFRKVCNHPDLFERADVDSPFSFT 1029
Score = 204 (76.9 bits), Expect = 2.7e-139, Sum P(2) = 2.7e-139
Identities = 36/63 (57%), Positives = 52/63 (82%)
Query: 495 VYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISER 554
+ ++ KL LD+LL +LK+ GHRVL+Y QMTKM+DL+EE++ YR+Y +RLDGSSK+ +R
Sbjct: 1295 ITESAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDR 1354
Query: 555 RDM 557
RD+
Sbjct: 1355 RDL 1357
Score = 121 (47.7 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 401 VCFFESTQNMVSPALKKKIKIE-DLIHSSSGG---SIQLSNNIAS-NLMNLVMQFRKVCN 455
+C Q + LK +I D I +++ S SN+ + NL+N VMQFRKVCN
Sbjct: 953 LCDLTQRQAKLYQVLKSQISTNYDAIENAATNDSTSNSASNSGSDQNLINAVMQFRKVCN 1012
Query: 456 HPELFERRDAKAPLAMS 472
HP+LFER D +P + +
Sbjct: 1013 HPDLFERADVDSPFSFT 1029
Score = 42 (19.8 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 226 FDSHDEFNEWFSKDIESHAENKTSIDERHLSR---LHMILKPFMLR 268
FD H +E ++ E + +N TS+ E + + L LK + L+
Sbjct: 667 FDDHANAHEEEEEEDELNFQNPTSLGEITIEQPKILACTLKEYQLK 712
Score = 39 (18.8 bits), Expect = 7.4e-122, Sum P(2) = 7.4e-122
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 476 YVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFM 535
Y +P+L++E+ +L + V A KL + + + L S++T L E F
Sbjct: 1083 YSLPRLIYEDLILPNYNNDVDIANKLKNVKFNIFNPSTNYELCLFLSKLTGEPSLNEFFR 1142
Query: 536 V 536
V
Sbjct: 1143 V 1143
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 1151 (410.2 bits), Expect = 4.8e-138, Sum P(3) = 4.8e-138
Identities = 221/425 (52%), Positives = 295/425 (69%)
Query: 20 STTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAF 79
S P FST QP + +LK YQLKGM W+ NLYDQGINGILADEMGLGKT+QSIA
Sbjct: 1141 SIPPGFSTADTLKQPTILNADLKPYQLKGMTWIVNLYDQGINGILADEMGLGKTIQSIAV 1200
Query: 80 LCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKN 139
L H+AE ++WGPFLI++P STLHNW+ E +FVP FKV+PYWG+ Q+R +R++W+ K
Sbjct: 1201 LAHLAEEKNIWGPFLIVTPKSTLHNWKNEFAKFVPAFKVIPYWGTQQQRTTIRKYWNPKK 1260
Query: 140 LHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNR 199
L+ +++ FHV+ITSY ++V D KYF+R++WQY++LDEA AIKSS+S RWK L+ F+CRNR
Sbjct: 1261 LYHRNSPFHVLITSYNVIVRDEKYFHRLRWQYMVLDEAHAIKSSASNRWKTLMSFNCRNR 1320
Query: 200 LLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLH 259
LLL+GTPIQNSMAELWALLHFIMP+ FDSHDEF EWFSKDIE+HA ++ ++E L+RLH
Sbjct: 1321 LLLTGTPIQNSMAELWALLHFIMPTFFDSHDEFAEWFSKDIENHAMSQGGLNEHQLNRLH 1380
Query: 260 MILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSI 319
MILKPFMLRRIK+DVENE+ K E+ VYC LT RQK LY +++ I I +L+ G S
Sbjct: 1381 MILKPFMLRRIKRDVENEMPSKTEVEVYCNLTHRQKKLYQSIRSNISITELL---GGASF 1437
Query: 320 QLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREEGTIL 379
++ + LMN VMQFRKVCNHPE F+R + ++P L++ + ME + T
Sbjct: 1438 SEQGSMKA-LMNFVMQFRKVCNHPETFKRSECESPF---------LFQVQTME-PQNTTS 1486
Query: 380 PEFPHVPRDPVILPQQP--TYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSN 437
P+ P+ + + P +P F N ++ +I+ + + + +SN
Sbjct: 1487 PQCPNHLKTVRSINNNPIQVVIPKLIFREAWNPLNSTDSDQIRTRTIDRFNIFKANNISN 1546
Query: 438 NIASN 442
N + N
Sbjct: 1547 NSSGN 1551
Score = 234 (87.4 bits), Expect = 4.8e-138, Sum P(3) = 4.8e-138
Identities = 42/61 (68%), Positives = 54/61 (88%)
Query: 497 DAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRD 556
D+GKL VLD LLK LK GHRVL+YSQ TKMI++LE+FM++RKY+++RLDGSSK+ +RRD
Sbjct: 1765 DSGKLQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFMIFRKYKYLRLDGSSKLDDRRD 1824
Query: 557 M 557
M
Sbjct: 1825 M 1825
Score = 120 (47.3 bits), Expect = 1.7e-21, Sum P(5) = 1.7e-21
Identities = 37/132 (28%), Positives = 59/132 (44%)
Query: 343 PELFERRDAKAPLAMSCEDYHRLYRG----RQMEREEGTILP-EFPHVPRDPVI-LPQQP 396
P F+ D A + H + +G Q+ R + P + RD +P +
Sbjct: 1344 PTFFDSHDEFAEWFSKDIENHAMSQGGLNEHQLNRLHMILKPFMLRRIKRDVENEMPSKT 1403
Query: 397 TYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNH 456
C Q + +++ I I +L+ G S ++ + LMN VMQFRKVCNH
Sbjct: 1404 EVEVYCNLTHRQKKLYQSIRSNISITELL---GGASFSEQGSMKA-LMNFVMQFRKVCNH 1459
Query: 457 PELFERRDAKAP 468
PE F+R + ++P
Sbjct: 1460 PETFKRSECESP 1471
Score = 54 (24.1 bits), Expect = 1.3e-14, Sum P(4) = 1.3e-14
Identities = 38/161 (23%), Positives = 69/161 (42%)
Query: 223 PSMFDSHDEFNE-WFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDK 281
P FDS ++ E ++ K + +HA +K S E I + L DV +E +D+
Sbjct: 668 PLDFDSDEDITEEYYKKMLANHARSKKSKKETD-----KIFRELELS--DDDVFDEKNDR 720
Query: 282 IEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSG------GSIQLSNNIASNLMNLVMQ 335
++ + L R+ +KKK+ ++ +SSS GS S + N +
Sbjct: 721 KQLKMMKRLMDREDN-DRRVKKKM-VDPKYNSSSSRSKDRYGSSSSSKSSKYNSSSSSSS 778
Query: 336 FRKVCN---HPELFERRDAKAPLAMSCEDYHRLYRGRQMER 373
R N P +F D + E++ RL++ R+ ++
Sbjct: 779 SRSKDNKYIRPSIFSSDDDFSK-DEDDEEFERLWKDRKKKK 818
Score = 43 (20.2 bits), Expect = 1.7e-21, Sum P(5) = 1.7e-21
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 220 FIMPSMFDSHDEFNE 234
+I PS+F S D+F++
Sbjct: 786 YIRPSIFSSDDDFSK 800
Score = 42 (19.8 bits), Expect = 1.7e-21, Sum P(5) = 1.7e-21
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 477 VIPKLVFEEA 486
VIPKL+F EA
Sbjct: 1507 VIPKLIFREA 1516
Score = 37 (18.1 bits), Expect = 4.8e-138, Sum P(3) = 4.8e-138
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 9 EVEKQRSQQFGSTTPSFSTEVERPQP 34
E E F STTP+ S+ + + P
Sbjct: 548 EHESDSDVDF-STTPTLSSHISKYSP 572
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 794 (284.6 bits), Expect = 5.5e-99, Sum P(3) = 5.5e-99
Identities = 152/329 (46%), Positives = 218/329 (66%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
+T+V+ P P L RG L+ YQ G++WL +Y++ +NGILADEMGLGKT+Q+I+ L H+A
Sbjct: 613 TTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLAC 672
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP LII P S + NW+ E++R+ P FK++ Y+G+ +ERK+ RQ W TK
Sbjct: 673 EKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGW------TKPN 726
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
+FHV ITSY+LV+ D + F R W+YLILDEAQ IK+ S RW+ LL F+ + RLLL+GT
Sbjct: 727 AFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGT 786
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QNS+ ELW+L+HF+MP +F SH EF EWFS + E +E + RLH +L+PF
Sbjct: 787 PLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPF 846
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR+K DVE ++ K E ++ C L+ RQ+ LY +D + ++ + +
Sbjct: 847 LLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLY---------DDFMAQTTTKETLATGHF 897
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAP 354
S ++N++MQ RKVCNHP LF+ R +P
Sbjct: 898 MS-VINILMQLRKVCNHPNLFDPRPVTSP 925
Score = 180 (68.4 bits), Expect = 5.5e-99, Sum P(3) = 5.5e-99
Identities = 34/66 (51%), Positives = 53/66 (80%)
Query: 492 LTLV-YD-AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSS 549
L L+ YD AGKL L LL++LKA GHRVL+++QMT+M+D+LE+F+ Y + ++RLDGS+
Sbjct: 2022 LRLIQYDCAGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGST 2081
Query: 550 KISERR 555
++ +R+
Sbjct: 2082 RVEQRQ 2087
Score = 93 (37.8 bits), Expect = 5.5e-99, Sum P(3) = 5.5e-99
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVY 496
+++N++MQ RKVCNHP LF+ R +P ++ P + F A L + T V+
Sbjct: 899 SVINILMQLRKVCNHPNLFDPRPVTSP-------FITPGICFSTASLVLRATEVH 946
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 794 (284.6 bits), Expect = 3.2e-94, Sum P(3) = 3.2e-94
Identities = 152/329 (46%), Positives = 218/329 (66%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
+T+V+ P P L RG L+ YQ G++WL +Y++ +NGILADEMGLGKT+Q+I+ L H+A
Sbjct: 610 TTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLAC 669
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP LII P S + NW+ E++R+ P FK++ Y+G+ +ERK+ RQ W TK
Sbjct: 670 EKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGW------TKPN 723
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
+FHV ITSY+LV+ D + F R W+YLILDEAQ IK+ S RW+ LL F+ + RLLL+GT
Sbjct: 724 AFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGT 783
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QNS+ ELW+L+HF+MP +F SH EF EWFS + E +E + RLH +L+PF
Sbjct: 784 PLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPF 843
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR+K DVE ++ K E ++ C L+ RQ+ LY +D + ++ + +
Sbjct: 844 LLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLY---------DDFMAQTTTKETLATGHF 894
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAP 354
S ++N++MQ RKVCNHP LF+ R +P
Sbjct: 895 MS-VINILMQLRKVCNHPNLFDPRPVTSP 922
Score = 189 (71.6 bits), Expect = 3.2e-94, Sum P(3) = 3.2e-94
Identities = 41/109 (37%), Positives = 68/109 (62%)
Query: 454 CNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLT------LV-YDAGKLSVLDD 506
C+ P R A ++CE + P+ ++C+ T L+ YD GKL L
Sbjct: 1993 CHPPPWLAPRQAAFQEQLACELW--PRARPLHRIVCNMRTQFPDLRLIQYDCGKLQTLAV 2050
Query: 507 LLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR 555
LL++LKA GHRVL+++QMT+M+D+LE+F+ Y + ++RLDGS+++ +R+
Sbjct: 2051 LLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQ 2099
Score = 92 (37.4 bits), Expect = 4.2e-83, Sum P(2) = 4.2e-83
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVY 496
+++N++MQ RKVCNHP LF+ R +P ++ P + F A L + T V+
Sbjct: 896 SVINILMQLRKVCNHPNLFDPRPVTSP-------FITPGICFSTASLVLRATDVH 943
Score = 39 (18.8 bits), Expect = 3.2e-94, Sum P(3) = 3.2e-94
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 369 RQMEREEGTILPEFPHVPRDP-----VILPQQPTYLP 400
RQ R+ T +P PR P +L +PT P
Sbjct: 1322 RQAPRDGLTPVPPLAPAPRPPSSGLPAVLTPRPTLTP 1358
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 794 (284.6 bits), Expect = 1.1e-93, Sum P(3) = 1.1e-93
Identities = 152/329 (46%), Positives = 218/329 (66%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
+T+V+ P P L RG L+ YQ G++WL +Y++ +NGILADEMGLGKT+Q+I+ L H+A
Sbjct: 603 TTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLAC 662
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP LII P S + NW+ E++R+ P FK++ Y+G+ +ERK+ RQ W TK
Sbjct: 663 EKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGW------TKPN 716
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
+FHV ITSY+LV+ D + F R W+YLILDEAQ IK+ S RW+ LL F+ + RLLL+GT
Sbjct: 717 AFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGT 776
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QNS+ ELW+L+HF+MP +F SH EF EWFS + E +E + RLH +L+PF
Sbjct: 777 PLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPF 836
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR+K DVE ++ K E ++ C L+ RQ+ LY +D + ++ + +
Sbjct: 837 LLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLY---------DDFMAQTTTKETLATGHF 887
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAP 354
S ++N++MQ RKVCNHP LF+ R +P
Sbjct: 888 MS-VINILMQLRKVCNHPNLFDPRPVTSP 915
Score = 185 (70.2 bits), Expect = 1.1e-93, Sum P(3) = 1.1e-93
Identities = 33/65 (50%), Positives = 52/65 (80%)
Query: 492 LTLV-YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
L L+ YD GKL L LL++LKA GHRVL+++QMT+M+D+LE+F+ Y + ++RLDGS++
Sbjct: 2035 LRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTR 2094
Query: 551 ISERR 555
+ +R+
Sbjct: 2095 VEQRQ 2099
Score = 93 (37.8 bits), Expect = 3.3e-83, Sum P(2) = 3.3e-83
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+++N++MQ RKVCNHP LF+ R +P ++ P + F A L + T V+ ++
Sbjct: 889 SVINILMQLRKVCNHPNLFDPRPVTSP-------FITPGICFSTASLVLRATDVHPLQRI 941
Query: 502 SV 503
+
Sbjct: 942 DM 943
Score = 38 (18.4 bits), Expect = 1.1e-93, Sum P(3) = 1.1e-93
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 369 RQMEREEGTILPEFPHVPRDP-----VILPQQPTYLP 400
RQ R+ T +P PR P +L +PT P
Sbjct: 1314 RQAPRDGLTPVPPLAPAPRPPSSGLPAVLNPRPTLTP 1350
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 794 (284.6 bits), Expect = 1.4e-93, Sum P(3) = 1.4e-93
Identities = 152/329 (46%), Positives = 218/329 (66%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
+T+V+ P P L RG L+ YQ G++WL +Y++ +NGILADEMGLGKT+Q+I+ L H+A
Sbjct: 611 TTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLAC 670
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP LII P S + NW+ E++R+ P FK++ Y+G+ +ERK+ RQ W TK
Sbjct: 671 EKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGW------TKPN 724
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
+FHV ITSY+LV+ D + F R W+YLILDEAQ IK+ S RW+ LL F+ + RLLL+GT
Sbjct: 725 AFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGT 784
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QNS+ ELW+L+HF+MP +F SH EF EWFS + E +E + RLH +L+PF
Sbjct: 785 PLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPF 844
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR+K DVE ++ K E ++ C L+ RQ+ LY +D + ++ + +
Sbjct: 845 LLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLY---------DDFMAQTTTKETLATGHF 895
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAP 354
S ++N++MQ RKVCNHP LF+ R +P
Sbjct: 896 MS-VINILMQLRKVCNHPNLFDPRPVTSP 923
Score = 185 (70.2 bits), Expect = 1.4e-93, Sum P(3) = 1.4e-93
Identities = 33/65 (50%), Positives = 52/65 (80%)
Query: 492 LTLV-YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
L L+ YD GKL L LL++LKA GHRVL+++QMT+M+D+LE+F+ Y + ++RLDGS++
Sbjct: 2046 LRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTR 2105
Query: 551 ISERR 555
+ +R+
Sbjct: 2106 VEQRQ 2110
Score = 93 (37.8 bits), Expect = 3.3e-83, Sum P(2) = 3.3e-83
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+++N++MQ RKVCNHP LF+ R +P ++ P + F A L + T V+ ++
Sbjct: 897 SVINILMQLRKVCNHPNLFDPRPVTSP-------FITPGICFSTASLVLRATDVHPLQRI 949
Query: 502 SV 503
+
Sbjct: 950 DM 951
Score = 37 (18.1 bits), Expect = 1.4e-93, Sum P(3) = 1.4e-93
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 369 RQMEREEGTILPEFPHVPRDP-----VILPQQPTYLP 400
RQ R+ T +P PR P +L +PT P
Sbjct: 1322 RQAPRDGLTPVPPLAPAPRPPSSGLPAVLTPRPTLPP 1358
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 799 (286.3 bits), Expect = 2.3e-93, Sum P(2) = 2.3e-93
Identities = 154/338 (45%), Positives = 220/338 (65%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
ST V P P L + +L+ YQ G++WL + ++ +NGILADEMGLGKT+Q+IA L H+A
Sbjct: 899 STNVVTPVPFLLKHSLREYQHIGLDWLVTMNERKLNGILADEMGLGKTIQTIALLAHLAC 958
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP LI+ P+S + NW+ E +++ P FK++ Y+GS +ERK+ R W TK
Sbjct: 959 AKGNWGPHLIVVPSSVMLNWEMEFKKWCPGFKILTYYGSQKERKLKRVGW------TKPN 1012
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
+FHV ITSY+LVV D + F R KW+YLILDEAQ IK+ S RW+LLL FS RLLL+GT
Sbjct: 1013 AFHVCITSYKLVVQDQQSFRRKKWKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGT 1072
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN + ELW+L+HF+MP +F SH EF EWFS + E +E ++RLH +++PF
Sbjct: 1073 PLQNDLMELWSLMHFLMPYVFSSHREFKEWFSNPMTGMIEGNMEYNETLITRLHKVIRPF 1132
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR+KK+VE ++ K E ++ C L++RQ+ LY + K + + + N+
Sbjct: 1133 LLRRLKKEVEKQMPKKYEHVITCRLSNRQRYLYEDFMSRAKTRETLQTG---------NL 1183
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYH 363
S ++N++MQ RKVCNHP +FE R +P M +H
Sbjct: 1184 LS-VINVLMQLRKVCNHPNMFEARPTISPFQMDGITFH 1220
Score = 184 (69.8 bits), Expect = 2.3e-93, Sum P(2) = 2.3e-93
Identities = 31/60 (51%), Positives = 49/60 (81%)
Query: 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR 555
YD GKL +D LL++LK +GHRVL+++QMTKM+D+LE F+ Y + ++RLDGS+++ +R+
Sbjct: 1655 YDCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQ 1714
Score = 104 (41.7 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 416 KKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCED 475
+++ ED + + + N+ S ++N++MQ RKVCNHP +FE R +P M
Sbjct: 1160 RQRYLYEDFMSRAKTRETLQTGNLLS-VINVLMQLRKVCNHPNMFEARPTISPFQMDGIT 1218
Query: 476 YVIPKLV 482
+ P+LV
Sbjct: 1219 FHTPRLV 1225
Score = 40 (19.1 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 2 DNVRHAVEVEKQRSQQFGSTTPSFSTEVERP 32
D H +++S G T P TE E P
Sbjct: 1462 DLATHVKSTVQKQSIANGKTEPEEETEAEDP 1492
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 781 (280.0 bits), Expect = 5.4e-90, Sum P(2) = 5.4e-90
Identities = 155/336 (46%), Positives = 223/336 (66%)
Query: 14 RSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKT 73
RS Q T S +T+V P L + +L+ YQ G++WL +Y++ +NGILADEMGLGKT
Sbjct: 510 RSAQPTGFTYS-TTKVRTKLPFLLKHSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKT 568
Query: 74 VQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ 133
+ +IA L H+A +WGP LI+ P S + NW+ E ++ P FK++ Y+GS +ERK+ RQ
Sbjct: 569 IMTIALLAHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQ 628
Query: 134 FWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLG 193
W MK L+ SFHV IT+Y+LV+ D K F R KW+YLILDEA IK+ S RW+ LL
Sbjct: 629 GW-MK-LN----SFHVCITTYRLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLN 682
Query: 194 FSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDER 253
F+ + R+LL+GTP+QN + ELW+L+HF+MP +F SH EF +WF I E + I++
Sbjct: 683 FNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPIAGMVEGQEKINKE 742
Query: 254 HLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHS 313
+ RLH +L+PF+LRR+K+DVE +L K E +++C L+ RQ+ LY ED I +
Sbjct: 743 VIDRLHNVLRPFLLRRLKRDVEKQLPSKHEHVIFCRLSKRQRNLY---------EDFI-A 792
Query: 314 SSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 349
S+ L++ +++++MQ RKVCNHP+LFE R
Sbjct: 793 STETQATLTSGSFFGMISIIMQLRKVCNHPDLFEGR 828
Score = 164 (62.8 bits), Expect = 5.4e-90, Sum P(2) = 5.4e-90
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 479 PKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYR 538
P +V + + + +D GKL L LL++LK GHR L+++QMTKM+D+LE F+
Sbjct: 1055 PAIVRRQVYFPDRRLIQFDCGKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLY 1114
Query: 539 KYRFMRLDGSSKISERRDM 557
Y +MRLDGS+ ER+ +
Sbjct: 1115 GYTYMRLDGSTPPEERQTL 1133
Score = 89 (36.4 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 422 EDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 463
ED I +S+ L++ +++++MQ RKVCNHP+LFE R
Sbjct: 788 EDFI-ASTETQATLTSGSFFGMISIIMQLRKVCNHPDLFEGR 828
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 739 (265.2 bits), Expect = 2.8e-89, Sum P(2) = 2.8e-89
Identities = 151/334 (45%), Positives = 211/334 (63%)
Query: 34 PGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPF 93
P LFRG L+ YQ G+ WL L+D NGILADEMGLGKT+Q+IA L H+A + WGP
Sbjct: 440 PFLFRGTLREYQQYGLEWLTALHDSNTNGILADEMGLGKTIQTIALLAHLACEKENWGPH 499
Query: 94 LIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITS 153
LII P S + NW+ E ++F+P FK++ Y+G+PQERK R W K ++HV ITS
Sbjct: 500 LIIVPTSVMLNWEMEFKKFLPGFKILTYYGNPQERKEKRSGW------YKPDTWHVCITS 553
Query: 154 YQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAE 213
YQLV+ D + F R KWQY+ILDEA IK+ S RW+ LL F+ +RLLL+GTP+QN++ E
Sbjct: 554 YQLVLQDHQPFRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVE 613
Query: 214 LWALLHFIMP-------SMFDSHDEFNEWFSKDIESHAENKTSIDERHLS---RLHMILK 263
LW+LL+F+MP S F + +F +WFSK ++ E ++ ++ +LH +L+
Sbjct: 614 LWSLLYFLMPAGVTQNNSAFANLKDFQDWFSKPMDRLIEEGQDMNPEAMNTVAKLHRVLR 673
Query: 264 PFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSN 323
P++LRR+K +VE ++ K E +VYC L+ RQ+ LY +D I+ + I S
Sbjct: 674 PYLLRRLKTEVEKQMPAKYEHVVYCQLSKRQRFLY---------DDFINRARTREILASG 724
Query: 324 NIASNLMNLVMQFRKVCNHPELFERRDAKAPLAM 357
N S ++N +MQ RKVCNHP L E R A+
Sbjct: 725 NFMS-IINCLMQLRKVCNHPNLHEERPIVTSFAL 757
Score = 189 (71.6 bits), Expect = 2.8e-89, Sum P(2) = 2.8e-89
Identities = 35/65 (53%), Positives = 52/65 (80%)
Query: 491 KLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
K L YD GKL VLD LLK L ++GHRVL+++QMTK++D+LE+F+ +R++RLDG++K
Sbjct: 983 KRLLQYDCGKLQVLDRLLKDLVSNGHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATK 1042
Query: 551 ISERR 555
I +R+
Sbjct: 1043 IEQRQ 1047
Score = 99 (39.9 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 36/126 (28%), Positives = 57/126 (45%)
Query: 368 GRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKI--EDLI 425
G+ M E + + V R P +L + T + +++V L K+ + +D I
Sbjct: 654 GQDMNPEAMNTVAKLHRVLR-PYLLRRLKTEVEKQMPAKYEHVVYCQLSKRQRFLYDDFI 712
Query: 426 HSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAM---SCEDYVIPKLV 482
+ + I S N S ++N +MQ RKVCNHP L E R A+ + D I L+
Sbjct: 713 NRARTREILASGNFMS-IINCLMQLRKVCNHPNLHEERPIVTSFALRRSAIADLEIKDLL 771
Query: 483 FEEALL 488
+ LL
Sbjct: 772 VRKRLL 777
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 751 (269.4 bits), Expect = 3.1e-89, Sum P(2) = 3.1e-89
Identities = 153/335 (45%), Positives = 215/335 (64%)
Query: 29 VERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYD 88
V+ P P L RGNL+ YQ +G+NWLA+LY+ NGILADEMGLGKT+Q+I+ L ++A +
Sbjct: 684 VDVPVPSLLRGNLRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYLACEKE 743
Query: 89 VWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFH 148
WGP LI+ P S L NW+ E +RF P FKV+ Y+GSPQ+RK R+ W+ K +FH
Sbjct: 744 NWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRKEKRKGWN------KPDAFH 797
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V I SYQLVV D F R +WQY++LDEA IK+ S RW+ LL F+ + RLLL+GTP+Q
Sbjct: 798 VCIVSYQLVVQDQHSFKRKRWQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPLQ 857
Query: 209 NSMAELWALLHFIMP---------SMFDSHDEFNEWFSKDIESHAENKTSIDE-----RH 254
N++AELW+LL+F+MP S F D F +WF + ++ E + + +
Sbjct: 858 NNLAELWSLLYFLMPQTVIDGKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQDKETKKT 917
Query: 255 LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSS 314
+++LH +L+P++LRR+K DVE ++ K E +VYC L+ RQ+ LY +D + +
Sbjct: 918 VAKLHQVLRPYLLRRLKADVEKQMPAKYEHIVYCKLSKRQRFLY---------DDFMSRA 968
Query: 315 SGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 349
+ S N S ++N +MQ RKVCNHP LFE R
Sbjct: 969 QTKATLASGNFMS-IVNCLMQLRKVCNHPNLFEVR 1002
Score = 181 (68.8 bits), Expect = 3.1e-89, Sum P(2) = 3.1e-89
Identities = 34/65 (52%), Positives = 50/65 (76%)
Query: 491 KLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
K L YD GKL L LL++LK +GHR L+++QMTK++D+LE+F+ Y Y +MRLDG++K
Sbjct: 1238 KSLLQYDCGKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATK 1297
Query: 551 ISERR 555
I +R+
Sbjct: 1298 IEDRQ 1302
Score = 87 (35.7 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 416 KKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 463
+++ +D + + + S N S ++N +MQ RKVCNHP LFE R
Sbjct: 956 RQRFLYDDFMSRAQTKATLASGNFMS-IVNCLMQLRKVCNHPNLFEVR 1002
Score = 41 (19.5 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 278 LSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQ 320
L D + + Y Q+ L S LKK I+ L + S+Q
Sbjct: 279 LEDDLTLEEYNKYIDEQRRLLSRLKKGIENGALKYDKETDSLQ 321
Score = 40 (19.1 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 238 KDIESHAENKTSIDERHLSRLHMILKPFMLR 268
KD+E AE K + E LS + + + P +LR
Sbjct: 666 KDVEEDAETK--VQEEQLSVVDVPV-PSLLR 693
Score = 40 (19.1 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
Identities = 24/80 (30%), Positives = 34/80 (42%)
Query: 218 LHFIMPSMFDSHDEFNEWFS--KDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVE 275
LH + P H+ + S D+ NK IDE+ RL L R+KK +E
Sbjct: 259 LHVVKPGYESLHEYIASFKSLEDDLTLEEYNKY-IDEQR--RL--------LSRLKKGIE 307
Query: 276 N-ELSDKIEIMVYCPLTSRQ 294
N L E P+TS++
Sbjct: 308 NGALKYDKETDSLQPITSKE 327
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 785 (281.4 bits), Expect = 8.5e-89, Sum P(2) = 8.5e-89
Identities = 150/332 (45%), Positives = 214/332 (64%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
+T+V+ P P L RG L+ YQ+ G++W+ LY++ +NGILADEMGLGKT+Q+I+ L H+A
Sbjct: 543 TTQVKTPVPFLIRGQLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLAHMAC 602
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
+ +WGP LI+ P S + NW+ E +++ P K++ Y+G+ +ER R+ W N
Sbjct: 603 SESIWGPHLIVVPTSVILNWEMEFKKWCPALKILTYFGTAKERAEKRKGWMKPNC----- 657
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
FHV ITSY+ V D + F + WQYLILDEAQ IK+ S RW+ LL R RLLL+GT
Sbjct: 658 -FHVCITSYKTVTQDIRAFKQRAWQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGT 716
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QNS+ ELW+L+HF+MP++F SHD+F +WFS + E + + RLH +L+PF
Sbjct: 717 PLQNSLMELWSLMHFLMPTIFSSHDDFKDWFSNPLTGMMEGNMEFNAPLIGRLHKVLRPF 776
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR+KK+VE +L +K E +V C L+ RQ+ LY +D + S S N+
Sbjct: 777 ILRRLKKEVEKQLPEKTEHIVNCSLSKRQRYLY---------DDFMSRRSTKENLKSGNM 827
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAPLAM 357
S ++N+VMQ RK CNHP LFE R AP +
Sbjct: 828 MS-VLNIVMQLRKCCNHPNLFEPRPVVAPFVV 858
Score = 151 (58.2 bits), Expect = 8.5e-89, Sum P(2) = 8.5e-89
Identities = 30/79 (37%), Positives = 52/79 (65%)
Query: 480 KLVFEEALLCHKLTLV-YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYR 538
++ AL +L L+ YD GKL L LL++L HR L+++QM+KM+D+L+ F+ +
Sbjct: 1168 RMSISRALQFPELRLIEYDCGKLQTLAVLLRQLYLYKHRCLIFTQMSKMLDVLQTFLSHH 1227
Query: 539 KYRFMRLDGSSKISERRDM 557
Y++ RLDG++ + +R+ M
Sbjct: 1228 GYQYFRLDGTTGVEQRQAM 1246
Score = 119 (46.9 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 405 ESTQNMVSPALKKKIKI--EDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFER 462
E T+++V+ +L K+ + +D + S S N+ S ++N+VMQ RK CNHP LFE
Sbjct: 791 EKTEHIVNCSLSKRQRYLYDDFMSRRSTKENLKSGNMMS-VLNIVMQLRKCCNHPNLFEP 849
Query: 463 RDAKAPLAMSCEDYVIPKLVFE 484
R AP + +P +FE
Sbjct: 850 RPVVAPFVVEKLQLDVPARLFE 871
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 763 (273.6 bits), Expect = 1.2e-88, Sum P(2) = 1.2e-88
Identities = 152/355 (42%), Positives = 225/355 (63%)
Query: 3 NVRHAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGING 62
++ + V + SQ G T + + V P L + L+ YQ G++WL +LY++ +NG
Sbjct: 745 DIINIVSKKANSSQPTGFTLNT--SNVRTKVPFLLKFPLREYQHIGLDWLVSLYEKNLNG 802
Query: 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYW 122
ILADEMGLGKT+ +I+ + ++A VWGP LI+ P+S L NW+ E +R+ P K+ Y
Sbjct: 803 ILADEMGLGKTIMTISLIAYLAVQKGVWGPHLIVVPSSVLFNWEMEFKRWCPGLKIFTYH 862
Query: 123 GSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKS 182
G+ ++RK R+ W N +FHV ITSY +V+SD F R KW Y+ILDEA IK+
Sbjct: 863 GTSRDRKANRKGWSKSN------AFHVCITSYSMVMSDHLIFRRKKWVYMILDEAHVIKN 916
Query: 183 SSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIES 242
+ RW+ +L F+ RLLL+GTP+QN++ ELW+L+HF+MP +F SH EF +WFS +
Sbjct: 917 FKTQRWQNMLHFNTERRLLLTGTPLQNNLMELWSLMHFLMPDIFQSHREFQDWFSNPVTG 976
Query: 243 HAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALK 302
E ++E ++RLH +L+PF+LRR+KKDVE ++ K +V C ++ RQK LY
Sbjct: 977 MIEGGDDVNEDIINRLHAVLRPFLLRRLKKDVEKQMPPKHTHIVPCSMSRRQKFLY---- 1032
Query: 303 KKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAM 357
E+ I+SSS S LS+ +++N++MQ RKVCNHP+LFE R +PL +
Sbjct: 1033 -----EEFINSSSTQST-LSSGSFFSIINILMQLRKVCNHPDLFEIRPIVSPLEL 1081
Score = 175 (66.7 bits), Expect = 1.2e-88, Sum P(2) = 1.2e-88
Identities = 33/65 (50%), Positives = 46/65 (70%)
Query: 491 KLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
K + YD GKL L LL+RLK GHR L+++QMTKM+D+ E F+ Y ++RLDGS+K
Sbjct: 1371 KRLIQYDCGKLQQLAILLRRLKQQGHRALIFTQMTKMLDIFETFLNLHAYTYLRLDGSTK 1430
Query: 551 ISERR 555
I +R+
Sbjct: 1431 IDKRQ 1435
Score = 118 (46.6 bits), Expect = 5.2e-15, Sum P(3) = 5.2e-15
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 412 SPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAM 471
S + ++K E+ I+SSS S LS+ +++N++MQ RKVCNHP+LFE R +PL +
Sbjct: 1023 SMSRRQKFLYEEFINSSSTQST-LSSGSFFSIINILMQLRKVCNHPDLFEIRPIVSPLEL 1081
Score = 44 (20.5 bits), Expect = 5.2e-15, Sum P(3) = 5.2e-15
Identities = 16/75 (21%), Positives = 36/75 (48%)
Query: 251 DERHLSRLHMILKPFMLRR---IKKDVENELSDKI--EIMVYCPLTSRQKLLYSALKKKI 305
+ R +R+ ++ ++R I+ E EL D+ + V ++ + ++ +KK +
Sbjct: 524 NRRFKTRVRKVIVKEVIRHHLLIQTQEERELRDEENRKKKVASNVSKEIRKFWNQIKKLV 583
Query: 306 KIEDLIHSSSGGSIQ 320
+ +D IH S I+
Sbjct: 584 QYKDKIHQDSINKIE 598
>MGI|MGI:2444036 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
Pfam:PF00176 MGI:MGI:2444036 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AC136146 EMBL:AC122417 IPI:IPI00988884
ProteinModelPortal:E9Q9V7 SMR:E9Q9V7 Ensembl:ENSMUST00000066582
OMA:VIQDHQA Bgee:E9Q9V7 Uniprot:E9Q9V7
Length = 936
Score = 794 (284.6 bits), Expect = 8.1e-87, Sum P(2) = 8.1e-87
Identities = 152/329 (46%), Positives = 218/329 (66%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
+T+V+ P P L RG L+ YQ G++WL +Y++ +NGILADEMGLGKT+Q+I+ L H+A
Sbjct: 595 TTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLAC 654
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP LII P S + NW+ E++R+ P FK++ Y+G+ +ERK+ RQ W TK
Sbjct: 655 EKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGW------TKPN 708
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
+FHV ITSY+LV+ D + F R W+YLILDEAQ IK+ S RW+ LL F+ + RLLL+GT
Sbjct: 709 AFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGT 768
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QNS+ ELW+L+HF+MP +F SH EF EWFS + E +E + RLH +L+PF
Sbjct: 769 PLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPF 828
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR+K DVE ++ K E ++ C L+ RQ+ LY +D + ++ + +
Sbjct: 829 LLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLY---------DDFMAQTTTKETLATGHF 879
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAP 354
S ++N++MQ RKVCNHP LF+ R +P
Sbjct: 880 MS-VINILMQLRKVCNHPNLFDPRPVTSP 907
Score = 93 (37.8 bits), Expect = 8.1e-87, Sum P(2) = 8.1e-87
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVY 496
+++N++MQ RKVCNHP LF+ R +P ++ P + F A L + T V+
Sbjct: 881 SVINILMQLRKVCNHPNLFDPRPVTSP-------FITPGICFSTASLVLRATEVH 928
>UNIPROTKB|G3N326 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 Pfam:PF00176
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 EMBL:DAAA02057908
Ensembl:ENSBTAT00000063921 Uniprot:G3N326
Length = 934
Score = 794 (284.6 bits), Expect = 1.0e-86, Sum P(2) = 1.0e-86
Identities = 152/329 (46%), Positives = 218/329 (66%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
+T+V+ P P L RG L+ YQ G++WL +Y++ +NGILADEMGLGKT+Q+I+ L H+A
Sbjct: 593 TTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLAC 652
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP LII P S + NW+ E++R+ P FK++ Y+G+ +ERK+ RQ W TK
Sbjct: 653 EKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGW------TKPN 706
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
+FHV ITSY+LV+ D + F R W+YLILDEAQ IK+ S RW+ LL F+ + RLLL+GT
Sbjct: 707 AFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGT 766
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QNS+ ELW+L+HF+MP +F SH EF EWFS + E +E + RLH +L+PF
Sbjct: 767 PLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPF 826
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR+K DVE ++ K E ++ C L+ RQ+ LY +D + ++ + +
Sbjct: 827 LLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLY---------DDFMAQTTTKETLATGHF 877
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAP 354
S ++N++MQ RKVCNHP LF+ R +P
Sbjct: 878 MS-VINILMQLRKVCNHPNLFDPRPVTSP 905
Score = 92 (37.4 bits), Expect = 1.0e-86, Sum P(2) = 1.0e-86
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVY 496
+++N++MQ RKVCNHP LF+ R +P ++ P + F A L + T V+
Sbjct: 879 SVINILMQLRKVCNHPNLFDPRPVTSP-------FITPGICFSTASLVLRATDVH 926
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 720 (258.5 bits), Expect = 2.9e-86, Sum P(2) = 2.9e-86
Identities = 147/341 (43%), Positives = 215/341 (63%)
Query: 29 VERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYD 88
++ P P L RG L+ YQ G++WLA LY INGILADEMGLGKT+Q+IA L H+A +
Sbjct: 813 LKTPIPHLLRGTLREYQHFGLDWLAGLYSNHINGILADEMGLGKTIQTIALLAHLAVEHG 872
Query: 89 VWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFH 148
VWGP L++ P S + NW+ E +++ P FK++ Y+G+ +ER+ R+ W D S++
Sbjct: 873 VWGPHLVVVPTSVILNWEMEFKKWCPGFKIMTYYGNQEERRQKRRGW------MDDNSWN 926
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V+ITSYQLV+ D + R W Y+ILDEA IK+ S RW+ LL F R RLLL+GTP+Q
Sbjct: 927 VLITSYQLVLQDQQVLKRRSWHYMILDEAHNIKNFRSQRWQALLTFRTRARLLLTGTPLQ 986
Query: 209 NSMAELWALLHFIMPSMFDSHD--------EFNEWFSKDIESHAEN--KTSIDERH--LS 256
N++ ELW+LL F+MP+ D F+EWF + +E E+ +T DE ++
Sbjct: 987 NNLTELWSLLFFLMPTDGDEAGIEGFADLRNFSEWFRRPVEQILEHGRETMDDEAKQVVT 1046
Query: 257 RLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSG 316
+LH +L+P++LRR+K DVE ++ K E +VYC L+ RQ+ LY + + ++ + +SG
Sbjct: 1047 KLHTVLRPYILRRLKADVEKQMPGKYEHVVYCRLSKRQRYLYDGFMSRAQTKETL--ASG 1104
Query: 317 GSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAM 357
+ +++N +MQ RKVCNHP+LFE R AM
Sbjct: 1105 NYL--------SIINCLMQLRKVCNHPDLFETRPISTSFAM 1137
Score = 187 (70.9 bits), Expect = 2.9e-86, Sum P(2) = 2.9e-86
Identities = 34/65 (52%), Positives = 50/65 (76%)
Query: 491 KLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
K L YD GKL LD LL+ LKA GHR L+++QMTKM+D+LE+F+ +R++RLDG++K
Sbjct: 1365 KRLLQYDCGKLQRLDKLLRDLKAGGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTK 1424
Query: 551 ISERR 555
+ +R+
Sbjct: 1425 VEQRQ 1429
Score = 109 (43.4 bits), Expect = 4.8e-78, Sum P(2) = 4.8e-78
Identities = 37/123 (30%), Positives = 57/123 (46%)
Query: 436 SNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLV 495
S N S ++N +MQ RKVCNHP+LFE R AM V + EAL+ +L
Sbjct: 1103 SGNYLS-IINCLMQLRKVCNHPDLFETRPISTSFAMPRS--VATEFETSEALVRRRLLYQ 1159
Query: 496 YDAGKLSV---------LDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLD 546
+ KL + +D+ +RL R++ Y+ + L E +R M+ +
Sbjct: 1160 HPLEKLDLDFLNLVPISREDISRRLADDSARIMAYAPF----NTLRERQYHRTNWEMKFN 1215
Query: 547 GSS 549
GS+
Sbjct: 1216 GST 1218
Score = 44 (20.5 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 31/135 (22%), Positives = 56/135 (41%)
Query: 185 SMRWKLLL-GFSCR---NRLLLSGT--PIQNSMAELWALLHFIMPSMFDSHDEFNEW-FS 237
S R + L GF R L SG I N + +L + + P +F++ +
Sbjct: 1081 SKRQRYLYDGFMSRAQTKETLASGNYLSIINCLMQLRKVCNH--PDLFETRPISTSFAMP 1138
Query: 238 KDIESHAENKTSIDERHLSRLHMILK---PFM-LRRI-KKDVENELSD-KIEIMVYCPLT 291
+ + + E ++ R L H + K F+ L I ++D+ L+D IM Y P
Sbjct: 1139 RSVATEFETSEALVRRRLLYQHPLEKLDLDFLNLVPISREDISRRLADDSARIMAYAPFN 1198
Query: 292 SRQKLLYSALKKKIK 306
+ ++ Y ++K
Sbjct: 1199 TLRERQYHRTNWEMK 1213
>UNIPROTKB|J9PA15 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AAEX03004381 EMBL:AAEX03004385 EMBL:AAEX03004386
EMBL:AAEX03004382 EMBL:AAEX03004383 EMBL:AAEX03004384
EMBL:AAEX03004387 EMBL:AAEX03004388 Ensembl:ENSCAFT00000048702
Uniprot:J9PA15
Length = 1555
Score = 794 (284.6 bits), Expect = 1.6e-84, Sum P(2) = 1.6e-84
Identities = 152/329 (46%), Positives = 218/329 (66%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
+T+V+ P P L RG L+ YQ G++WL +Y++ +NGILADEMGLGKT+Q+I+ L H+A
Sbjct: 609 TTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLAC 668
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP LII P S + NW+ E++R+ P FK++ Y+G+ +ERK+ RQ W TK
Sbjct: 669 EKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGW------TKPN 722
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
+FHV ITSY+LV+ D + F R W+YLILDEAQ IK+ S RW+ LL F+ + RLLL+GT
Sbjct: 723 AFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGT 782
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QNS+ ELW+L+HF+MP +F SH EF EWFS + E +E + RLH +L+PF
Sbjct: 783 PLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPF 842
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR+K DVE ++ K E ++ C L+ RQ+ LY +D + ++ + +
Sbjct: 843 LLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLY---------DDFMAQTTTKETLATGHF 893
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAP 354
S ++N++MQ RKVCNHP LF+ R +P
Sbjct: 894 MS-VINILMQLRKVCNHPNLFDPRPVTSP 921
Score = 93 (37.8 bits), Expect = 1.6e-84, Sum P(2) = 1.6e-84
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+++N++MQ RKVCNHP LF+ R +P ++ P + F A L + T V+ ++
Sbjct: 895 SVINILMQLRKVCNHPNLFDPRPVTSP-------FITPGICFSTASLVLRATDVHPLQRI 947
Query: 502 SV 503
+
Sbjct: 948 DM 949
>UNIPROTKB|F6XHF3 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AAEX03004381 EMBL:AAEX03004385 EMBL:AAEX03004386
Ensembl:ENSCAFT00000026363 EMBL:AAEX03004382 EMBL:AAEX03004383
EMBL:AAEX03004384 EMBL:AAEX03004387 EMBL:AAEX03004388
Uniprot:F6XHF3
Length = 1823
Score = 794 (284.6 bits), Expect = 4.0e-84, Sum P(2) = 4.0e-84
Identities = 152/329 (46%), Positives = 218/329 (66%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
+T+V+ P P L RG L+ YQ G++WL +Y++ +NGILADEMGLGKT+Q+I+ L H+A
Sbjct: 609 TTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLAC 668
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP LII P S + NW+ E++R+ P FK++ Y+G+ +ERK+ RQ W TK
Sbjct: 669 EKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGW------TKPN 722
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
+FHV ITSY+LV+ D + F R W+YLILDEAQ IK+ S RW+ LL F+ + RLLL+GT
Sbjct: 723 AFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGT 782
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QNS+ ELW+L+HF+MP +F SH EF EWFS + E +E + RLH +L+PF
Sbjct: 783 PLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPF 842
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR+K DVE ++ K E ++ C L+ RQ+ LY +D + ++ + +
Sbjct: 843 LLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLY---------DDFMAQTTTKETLATGHF 893
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAP 354
S ++N++MQ RKVCNHP LF+ R +P
Sbjct: 894 MS-VINILMQLRKVCNHPNLFDPRPVTSP 921
Score = 93 (37.8 bits), Expect = 4.0e-84, Sum P(2) = 4.0e-84
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+++N++MQ RKVCNHP LF+ R +P ++ P + F A L + T V+ ++
Sbjct: 895 SVINILMQLRKVCNHPNLFDPRPVTSP-------FITPGICFSTASLVLRATDVHPLQRI 947
Query: 502 SV 503
+
Sbjct: 948 DM 949
Score = 39 (18.8 bits), Expect = 2.0e-78, Sum P(2) = 2.0e-78
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 369 RQMEREEGTILPEFPHVPRDP-----VILPQQPTYLP 400
RQ R+ T +P PR P +L +PT P
Sbjct: 1320 RQAPRDGLTPVPPLAPAPRPPSSGLPAVLTPRPTLTP 1356
>UNIPROTKB|E2R6G6 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 Ensembl:ENSCAFT00000026363
Uniprot:E2R6G6
Length = 1825
Score = 794 (284.6 bits), Expect = 4.0e-84, Sum P(2) = 4.0e-84
Identities = 152/329 (46%), Positives = 218/329 (66%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
+T+V+ P P L RG L+ YQ G++WL +Y++ +NGILADEMGLGKT+Q+I+ L H+A
Sbjct: 609 TTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLAC 668
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP LII P S + NW+ E++R+ P FK++ Y+G+ +ERK+ RQ W TK
Sbjct: 669 EKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGW------TKPN 722
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
+FHV ITSY+LV+ D + F R W+YLILDEAQ IK+ S RW+ LL F+ + RLLL+GT
Sbjct: 723 AFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGT 782
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QNS+ ELW+L+HF+MP +F SH EF EWFS + E +E + RLH +L+PF
Sbjct: 783 PLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPF 842
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR+K DVE ++ K E ++ C L+ RQ+ LY +D + ++ + +
Sbjct: 843 LLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLY---------DDFMAQTTTKETLATGHF 893
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAP 354
S ++N++MQ RKVCNHP LF+ R +P
Sbjct: 894 MS-VINILMQLRKVCNHPNLFDPRPVTSP 921
Score = 93 (37.8 bits), Expect = 4.0e-84, Sum P(2) = 4.0e-84
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+++N++MQ RKVCNHP LF+ R +P ++ P + F A L + T V+ ++
Sbjct: 895 SVINILMQLRKVCNHPNLFDPRPVTSP-------FITPGICFSTASLVLRATDVHPLQRI 947
Query: 502 SV 503
+
Sbjct: 948 DM 949
Score = 39 (18.8 bits), Expect = 2.0e-78, Sum P(2) = 2.0e-78
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 369 RQMEREEGTILPEFPHVPRDP-----VILPQQPTYLP 400
RQ R+ T +P PR P +L +PT P
Sbjct: 1320 RQAPRDGLTPVPPLAPAPRPPSSGLPAVLTPRPTLTP 1356
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 704 (252.9 bits), Expect = 3.1e-79, Sum P(2) = 3.1e-79
Identities = 138/322 (42%), Positives = 206/322 (63%)
Query: 34 PGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPF 93
P + + L+ YQ G++WL LY INGILADEMGLGKT+Q I+ L ++A +++WGP
Sbjct: 655 PPIIKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYLAYYFNIWGPH 714
Query: 94 LIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITS 153
L+I P S L NW+ E++RF P FK++ Y+G+ ER R W KD SFH+ I+S
Sbjct: 715 LVIVPTSILINWEIELKRFCPCFKILSYYGNQNERYKKRVGW-----FNKD-SFHICISS 768
Query: 154 YQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAE 213
Y VV D F R +W+Y+ILDEA IK+ ++ RW ++L N LL++GTP+QNS+ E
Sbjct: 769 YSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTKRWNIILSLKRDNCLLITGTPLQNSLEE 828
Query: 214 LWALLHFIMPSMFDSHDEFNEWFSKDIESHAE-NKTSIDERHLSRLHMILKPFMLRRIKK 272
LW+LLHF+MP++F SH +F EWFS + E +K + + RLH +++P++LRR+KK
Sbjct: 829 LWSLLHFLMPNIFTSHLDFKEWFSDPLNLAIEKSKIHHSKELIDRLHTVIRPYILRRLKK 888
Query: 273 DVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNL 332
+VE E+ +K E ++ C LT RQ++LY +++ +++ N I LMN+
Sbjct: 889 NVEKEMPNKYEHIIKCKLTRRQQILYDEFINNKNVQNTLNTG--------NYIG--LMNI 938
Query: 333 VMQFRKVCNHPELFERRDAKAP 354
++Q RKVCNH +LF + + P
Sbjct: 939 LIQLRKVCNHCDLFTNKYIQTP 960
Score = 140 (54.3 bits), Expect = 3.1e-79, Sum P(2) = 3.1e-79
Identities = 25/58 (43%), Positives = 42/58 (72%)
Query: 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR 555
+GKL L+ LL + K G++ L+++Q KM+D+LE F+ + Y F+RLDGS+K+ +R+
Sbjct: 1767 SGKLCALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQ 1824
Score = 86 (35.3 bits), Expect = 2.3e-09, Sum P(3) = 2.3e-09
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 416 KKKIKIEDLIHSSS-GGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLA-MSC 473
+++I ++ I++ + ++ N I LMN+++Q RKVCNH +LF + + P M
Sbjct: 909 RQQILYDEFINNKNVQNTLNTGNYIG--LMNILIQLRKVCNHCDLFTNKYIQTPYYYMLS 966
Query: 474 EDYVIPK--LVFEE 485
Y +P+ ++FE+
Sbjct: 967 IRYFVPRFFILFEK 980
Score = 52 (23.4 bits), Expect = 2.3e-09, Sum P(3) = 2.3e-09
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 227 DSHDEFNEWFSKDIESHAENKT-SIDERHLSRLHMILK 263
D++D+ N D + + + T ++DE+HL+++ I+K
Sbjct: 622 DNNDDNNNEHKNDSDDNDDILTCNMDEKHLTKIPPIIK 659
Score = 42 (19.8 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 20/83 (24%), Positives = 39/83 (46%)
Query: 227 DSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMV 286
+ +E N+ + KD H + D+ +++ K +L +K D+EN+ + E +
Sbjct: 490 EKREEENKNYEKD--EHEYESDNYDKEKINKK----KELIL--LKNDIENDSDETSEHIK 541
Query: 287 YCPLTSRQKLLYSALKKKIKIED 309
+S QK + KK+ I+D
Sbjct: 542 RDSRSSCQK--QNCEKKRRIIKD 562
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 704 (252.9 bits), Expect = 3.1e-79, Sum P(2) = 3.1e-79
Identities = 138/322 (42%), Positives = 206/322 (63%)
Query: 34 PGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPF 93
P + + L+ YQ G++WL LY INGILADEMGLGKT+Q I+ L ++A +++WGP
Sbjct: 655 PPIIKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYLAYYFNIWGPH 714
Query: 94 LIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITS 153
L+I P S L NW+ E++RF P FK++ Y+G+ ER R W KD SFH+ I+S
Sbjct: 715 LVIVPTSILINWEIELKRFCPCFKILSYYGNQNERYKKRVGW-----FNKD-SFHICISS 768
Query: 154 YQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAE 213
Y VV D F R +W+Y+ILDEA IK+ ++ RW ++L N LL++GTP+QNS+ E
Sbjct: 769 YSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTKRWNIILSLKRDNCLLITGTPLQNSLEE 828
Query: 214 LWALLHFIMPSMFDSHDEFNEWFSKDIESHAE-NKTSIDERHLSRLHMILKPFMLRRIKK 272
LW+LLHF+MP++F SH +F EWFS + E +K + + RLH +++P++LRR+KK
Sbjct: 829 LWSLLHFLMPNIFTSHLDFKEWFSDPLNLAIEKSKIHHSKELIDRLHTVIRPYILRRLKK 888
Query: 273 DVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNL 332
+VE E+ +K E ++ C LT RQ++LY +++ +++ N I LMN+
Sbjct: 889 NVEKEMPNKYEHIIKCKLTRRQQILYDEFINNKNVQNTLNTG--------NYIG--LMNI 938
Query: 333 VMQFRKVCNHPELFERRDAKAP 354
++Q RKVCNH +LF + + P
Sbjct: 939 LIQLRKVCNHCDLFTNKYIQTP 960
Score = 140 (54.3 bits), Expect = 3.1e-79, Sum P(2) = 3.1e-79
Identities = 25/58 (43%), Positives = 42/58 (72%)
Query: 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR 555
+GKL L+ LL + K G++ L+++Q KM+D+LE F+ + Y F+RLDGS+K+ +R+
Sbjct: 1767 SGKLCALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQ 1824
Score = 86 (35.3 bits), Expect = 2.3e-09, Sum P(3) = 2.3e-09
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 416 KKKIKIEDLIHSSS-GGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLA-MSC 473
+++I ++ I++ + ++ N I LMN+++Q RKVCNH +LF + + P M
Sbjct: 909 RQQILYDEFINNKNVQNTLNTGNYIG--LMNILIQLRKVCNHCDLFTNKYIQTPYYYMLS 966
Query: 474 EDYVIPK--LVFEE 485
Y +P+ ++FE+
Sbjct: 967 IRYFVPRFFILFEK 980
Score = 52 (23.4 bits), Expect = 2.3e-09, Sum P(3) = 2.3e-09
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 227 DSHDEFNEWFSKDIESHAENKT-SIDERHLSRLHMILK 263
D++D+ N D + + + T ++DE+HL+++ I+K
Sbjct: 622 DNNDDNNNEHKNDSDDNDDILTCNMDEKHLTKIPPIIK 659
Score = 42 (19.8 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 20/83 (24%), Positives = 39/83 (46%)
Query: 227 DSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMV 286
+ +E N+ + KD H + D+ +++ K +L +K D+EN+ + E +
Sbjct: 490 EKREEENKNYEKD--EHEYESDNYDKEKINKK----KELIL--LKNDIENDSDETSEHIK 541
Query: 287 YCPLTSRQKLLYSALKKKIKIED 309
+S QK + KK+ I+D
Sbjct: 542 RDSRSSCQK--QNCEKKRRIIKD 562
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 649 (233.5 bits), Expect = 2.5e-78, Sum P(2) = 2.5e-78
Identities = 139/342 (40%), Positives = 209/342 (61%)
Query: 31 RPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVW 90
R P G L+ YQ++G+NWL +L+ I GILADEMGLGKT+Q+I+FL ++ +
Sbjct: 186 RESPAYVNGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLGYLRYIEKIP 245
Query: 91 GPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVV 150
GPFL+I+P STL+NW +E+ R+ PD G +ER L Q K L D F VV
Sbjct: 246 GPFLVIAPKSTLNNWLREINRWTPDVNAFILQGDKEERAELIQ----KKLLGCD--FDVV 299
Query: 151 ITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNS 210
I SY++++ + +I W+Y+I+DEA IK+ SM ++L F+ RNRLL++GTP+QN+
Sbjct: 300 IASYEIIIREKSPLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNN 359
Query: 211 MAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRI 270
+ ELWALL+F++P +F +F++WFS ES E++ I + +LH +L+PF+LRRI
Sbjct: 360 LHELWALLNFLLPDIFSDAQDFDDWFSS--ESTEEDQDKI----VKQLHTVLQPFLLRRI 413
Query: 271 KKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLM 330
K DVE L K E+ +Y ++S QK Y + +K D ++ S+G S + L+
Sbjct: 414 KSDVETSLLPKKELNLYVGMSSMQKKWYKKILEKDL--DAVNGSNG-----SKESKTRLL 466
Query: 331 NLVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQME 372
N++MQ RK CNHP LF+ + P D H +Y +++
Sbjct: 467 NIMMQLRKCCNHPYLFDGAEPGPPYTT---DEHLVYNAAKLQ 505
Score = 174 (66.3 bits), Expect = 2.5e-78, Sum P(2) = 2.5e-78
Identities = 31/61 (50%), Positives = 47/61 (77%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LVY+A KL VLD LLK+LK G RVL++SQM++++D+LE++ +R Y + R+DGS+ +
Sbjct: 497 LVYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHED 556
Query: 554 R 554
R
Sbjct: 557 R 557
Score = 88 (36.0 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 32/118 (27%), Positives = 53/118 (44%)
Query: 360 EDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQ-----QPTYLPVCFFESTQNMVSPA 414
+D+ + E ++ I+ + H P +L + + + LP M S
Sbjct: 379 QDFDDWFSSESTEEDQDKIVKQL-HTVLQPFLLRRIKSDVETSLLPKKELNLYVGMSSMQ 437
Query: 415 LK--KKIKIEDL--IHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAP 468
K KKI +DL ++ S+G S + L+N++MQ RK CNHP LF+ + P
Sbjct: 438 KKWYKKILEKDLDAVNGSNG-----SKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPP 490
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 652 (234.6 bits), Expect = 3.3e-78, Sum P(2) = 3.3e-78
Identities = 145/353 (41%), Positives = 210/353 (59%)
Query: 32 PQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWG 91
P P L RG L+ YQ +G+NWLA+LY+ NGILADEMGLGKT+Q+I+ L ++A + WG
Sbjct: 814 PIPSLLRGTLRPYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLAYLACEHHKWG 873
Query: 92 PFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVI 151
P LII P S + NW+ E ++F P FKV+ Y+GSPQ+R R+ W+ K +FHV I
Sbjct: 874 PHLIIVPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRKGWN------KPDAFHVCI 927
Query: 152 TSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSM 211
TSYQLVV D + F R +W Y+ILDEA IK+ S RW+ LL F+ NRLLL+GTP+QN++
Sbjct: 928 TSYQLVVQDQQSFKRRRWTYMILDEAHNIKNFRSTRWRALLNFNTENRLLLTGTPLQNNL 987
Query: 212 AELWALLHFIMPSM---------FDSHDEFNEWFSKDI-----ESHAENKTSIDERHLSR 257
ELW+LL+F+MPS F + D+F +WF K + ++ A N IDE +
Sbjct: 988 MELWSLLYFLMPSSKVNQAMPEGFANLDDFQQWFGKPVNRILEQTSAGNSDLIDENERTT 1047
Query: 258 LHMILKPF-MLRRIKKDVENELSDKIEIMVYCPLTSR-QKLLYSALKKKIKI--EDLIHS 313
M + + R+ + + L +++ V + + + ++Y L K+ + +D +
Sbjct: 1048 QKMDEETRNTVARLHQVLRPYLLRRLKKDVEKQMPGKYEHIVYCRLSKRQRFLYDDFMSR 1107
Query: 314 SSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAM--SCEDYHR 364
+ S N S ++N +MQ RKVCNHP+LFE R AM S Y++
Sbjct: 1108 AKTKETLASGNFLS-IINCLMQLRKVCNHPDLFEVRPIVTSFAMPRSIPSYYQ 1159
Score = 179 (68.1 bits), Expect = 3.3e-78, Sum P(2) = 3.3e-78
Identities = 33/65 (50%), Positives = 48/65 (73%)
Query: 491 KLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
K L YD GKL L LL+ L + GHR L+++QMTK++D+LE+F+ YR+MRLDG++K
Sbjct: 1358 KTLLQYDCGKLQKLATLLQELTSQGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGATK 1417
Query: 551 ISERR 555
I +R+
Sbjct: 1418 IEDRQ 1422
Score = 92 (37.4 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 416 KKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAM 471
+++ +D + + S N S ++N +MQ RKVCNHP+LFE R AM
Sbjct: 1096 RQRFLYDDFMSRAKTKETLASGNFLS-IINCLMQLRKVCNHPDLFEVRPIVTSFAM 1150
Score = 42 (19.8 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 6/20 (30%), Positives = 16/20 (80%)
Query: 268 RRIKKDVENELSDKIEIMVY 287
+R++++ + E+ +K+E +VY
Sbjct: 1234 QRLRREEQAEIKEKLEHVVY 1253
Score = 40 (19.1 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 14/62 (22%), Positives = 30/62 (48%)
Query: 198 NRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSR 257
N + LS ++ A+L + + ++ + +E S+D ES ++ T + R L+
Sbjct: 602 NDMSLSVEELRKKYADLETSVEPLSSNVTSDKERESETSSEDAESSDDDDTDVT-RGLAS 660
Query: 258 LH 259
L+
Sbjct: 661 LY 662
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 615 (221.5 bits), Expect = 5.6e-78, Sum P(3) = 5.6e-78
Identities = 142/357 (39%), Positives = 205/357 (57%)
Query: 5 RHAVEVEKQRSQQFGSTTPSFSTEVE---RPQ----PGLFRGNLKHYQLKGMNWLANLYD 57
+ AV RS++ G T S TE E + Q P L G LK YQLKG+ WL +L+
Sbjct: 159 KRAVAAMISRSKEDGETINSDLTEEETVIKLQNELCPLLTGGQLKSYQLKGVKWLISLWQ 218
Query: 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFK 117
G+NGILAD+MGLGKT+Q+I FL H+ + GP+L+I+P STL NW E+ RF P
Sbjct: 219 NGLNGILADQMGLGKTIQTIGFLSHLKGN-GLDGPYLVIAPLSTLSNWFNEIARFTPSIN 277
Query: 118 VVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNR-IKWQYLILDE 176
+ Y G +R LR+ K + K F +VITSY++ ++D K R W+Y+++DE
Sbjct: 278 AIIYHGDKNQRDELRRKHMPKTVGPK---FPIVITSYEVAMNDAKRILRHYPWKYVVIDE 334
Query: 177 AQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWF 236
+K+ + L N+LLL+GTP+QN+++ELW+LL+FI+P +F SHDEF WF
Sbjct: 335 GHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTSHDEFESWF 394
Query: 237 SKDIESHAENKTSIDERH------LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPL 290
D +N+ + +E +S+LH IL+PF+LRR+K DVE L K EI++Y +
Sbjct: 395 --DFSEKNKNEATKEEEEKRRAQVVSKLHGILRPFILRRMKCDVELSLPRKKEIIMYATM 452
Query: 291 TSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
T QK L + + + + G + L NLV+Q RK CNHP+L +
Sbjct: 453 TDHQKKFQEHL-----VNNTLEAHLGENAIRGQGWKGKLNNLVIQLRKNCNHPDLLQ 504
Score = 134 (52.2 bits), Expect = 5.6e-78, Sum P(3) = 5.6e-78
Identities = 25/62 (40%), Positives = 42/62 (67%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
+V GK +L+ LL RL A+ H+VL++SQ TK++D+++ + + + R+DGS K+ E
Sbjct: 519 IVGQCGKFRLLERLLVRLFANNHKVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDE 578
Query: 554 RR 555
RR
Sbjct: 579 RR 580
Score = 67 (28.6 bits), Expect = 5.6e-78, Sum P(3) = 5.6e-78
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 443 LMNLVMQFRKVCNHPELFE 461
L NLV+Q RK CNHP+L +
Sbjct: 486 LNNLVIQLRKNCNHPDLLQ 504
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 629 (226.5 bits), Expect = 6.5e-78, Sum P(3) = 6.5e-78
Identities = 127/344 (36%), Positives = 210/344 (61%)
Query: 11 EKQRSQQFGSTTPSFSTEVERPQPG-LFRGNLKHYQLKGMNWLANLYDQGINGILADEMG 69
EK+ + + EV + QP L G LK YQLKG+ W+ +L++ +NGILADEMG
Sbjct: 751 EKREKIDYYNVAHRIKEEVTK-QPSILVGGTLKEYQLKGLQWMVSLFNNHLNGILADEMG 809
Query: 70 LGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERK 129
LGKT+Q+I+ L ++ E + GPFL+I P ST+ NW E E++ P K + Y G+P +RK
Sbjct: 810 LGKTIQTISLLTYLVEVKKIPGPFLVIVPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRK 869
Query: 130 ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSS-MRW 188
+++ D++ +F +V+T+++ V+ D RIKW ++I+DE +K+++S +
Sbjct: 870 VMQH--DIRT-----GNFQLVLTTFEYVIKDKGLLGRIKWVHMIIDEGHRMKNANSKLSE 922
Query: 189 KLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI-ESHAENK 247
L + RL+L+GTP+QN++ ELWALL+F++P +F+S F+EWF+ + ++K
Sbjct: 923 TLTQNYHSDYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDK 982
Query: 248 TSIDERH----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKK 303
+ E + RLH +L+PF+LRR+KKDVE +L +K+E +V C ++ Q LY + +
Sbjct: 983 IELTEEETLLVIRRLHKVLRPFLLRRLKKDVEKDLPNKVEKVVKCKSSALQSKLYQQMLR 1042
Query: 304 KIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
+ + GS+ ++ N N +MQ +K+CNHP ++E
Sbjct: 1043 YNML--YAGDPANGSVPVT---IKNANNQIMQLKKICNHPFVYE 1081
Score = 159 (61.0 bits), Expect = 6.5e-78, Sum P(3) = 6.5e-78
Identities = 26/60 (43%), Positives = 47/60 (78%)
Query: 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM 557
AGK +LD +L + KA+GH+VL++ QMT++++++E+F+ +R ++MRLDG +K +R D+
Sbjct: 1101 AGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDL 1160
Score = 67 (28.6 bits), Expect = 6.5e-78, Sum P(3) = 6.5e-78
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 429 SGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 461
+ GS+ ++ N N +MQ +K+CNHP ++E
Sbjct: 1052 ANGSVPVT---IKNANNQIMQLKKICNHPFVYE 1081
Score = 41 (19.5 bits), Expect = 3.7e-61, Sum P(2) = 3.7e-61
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 360 EDYHRLYRGRQMEREEGTIL 379
ED H ++ ++ EEG+I+
Sbjct: 1581 EDIHLMFTNAKIYNEEGSIV 1600
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 629 (226.5 bits), Expect = 6.5e-78, Sum P(3) = 6.5e-78
Identities = 127/344 (36%), Positives = 210/344 (61%)
Query: 11 EKQRSQQFGSTTPSFSTEVERPQPG-LFRGNLKHYQLKGMNWLANLYDQGINGILADEMG 69
EK+ + + EV + QP L G LK YQLKG+ W+ +L++ +NGILADEMG
Sbjct: 751 EKREKIDYYNVAHRIKEEVTK-QPSILVGGTLKEYQLKGLQWMVSLFNNHLNGILADEMG 809
Query: 70 LGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERK 129
LGKT+Q+I+ L ++ E + GPFL+I P ST+ NW E E++ P K + Y G+P +RK
Sbjct: 810 LGKTIQTISLLTYLVEVKKIPGPFLVIVPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRK 869
Query: 130 ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSS-MRW 188
+++ D++ +F +V+T+++ V+ D RIKW ++I+DE +K+++S +
Sbjct: 870 VMQH--DIRT-----GNFQLVLTTFEYVIKDKGLLGRIKWVHMIIDEGHRMKNANSKLSE 922
Query: 189 KLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI-ESHAENK 247
L + RL+L+GTP+QN++ ELWALL+F++P +F+S F+EWF+ + ++K
Sbjct: 923 TLTQNYHSDYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDK 982
Query: 248 TSIDERH----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKK 303
+ E + RLH +L+PF+LRR+KKDVE +L +K+E +V C ++ Q LY + +
Sbjct: 983 IELTEEETLLVIRRLHKVLRPFLLRRLKKDVEKDLPNKVEKVVKCKSSALQSKLYQQMLR 1042
Query: 304 KIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
+ + GS+ ++ N N +MQ +K+CNHP ++E
Sbjct: 1043 YNML--YAGDPANGSVPVT---IKNANNQIMQLKKICNHPFVYE 1081
Score = 159 (61.0 bits), Expect = 6.5e-78, Sum P(3) = 6.5e-78
Identities = 26/60 (43%), Positives = 47/60 (78%)
Query: 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM 557
AGK +LD +L + KA+GH+VL++ QMT++++++E+F+ +R ++MRLDG +K +R D+
Sbjct: 1101 AGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDL 1160
Score = 67 (28.6 bits), Expect = 6.5e-78, Sum P(3) = 6.5e-78
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 429 SGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 461
+ GS+ ++ N N +MQ +K+CNHP ++E
Sbjct: 1052 ANGSVPVT---IKNANNQIMQLKKICNHPFVYE 1081
Score = 41 (19.5 bits), Expect = 3.7e-61, Sum P(2) = 3.7e-61
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 360 EDYHRLYRGRQMEREEGTIL 379
ED H ++ ++ EEG+I+
Sbjct: 1581 EDIHLMFTNAKIYNEEGSIV 1600
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 648 (233.2 bits), Expect = 9.4e-78, Sum P(2) = 9.4e-78
Identities = 133/320 (41%), Positives = 202/320 (63%)
Query: 33 QPGLFRGN-LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWG 91
QP L G LK YQ++G+ W+ +LY+ +NGILADEMGLGKT+Q+IA + ++ E G
Sbjct: 1702 QPALLEGGKLKPYQMQGLQWMVSLYNNKLNGILADEMGLGKTIQTIALVSYLIEVKKNNG 1761
Query: 92 PFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVI 151
PFL++ P STL NW QE ++ P K V Y+G RK +F + F+ V+
Sbjct: 1762 PFLVVVPLSTLSNWGQEFSKWAPKVKRVLYYGDKPARK--SKFEEF----IAPGQFNAVV 1815
Query: 152 TSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLG--FSCRNRLLLSGTPIQN 209
T+Y+ ++ D ++IKW YLI+DE +K+ +S + ++LG +S R RLLL+GTP+QN
Sbjct: 1816 TTYEYIIKDKNALSKIKWNYLIVDEGHRMKNYTS-KLSIILGTSYSSRYRLLLTGTPLQN 1874
Query: 210 SMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHL---SRLHMILKPFM 266
S+ ELWALL+F++P++FD ++F +WF+ E +E L RLH +L+PF+
Sbjct: 1875 SLPELWALLNFLLPTIFDCVEDFEQWFNAPFAQTGEKIEMNEEEQLLIIQRLHKVLRPFL 1934
Query: 267 LRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIA 326
LRR+KK+VE +L DK+E ++ C +++ Q +Y +K K + L +SSGG+ + +A
Sbjct: 1935 LRRLKKEVEAQLPDKVEKVLKCDMSAFQAKMYDLIKTK-GVSKL--ASSGGA-DGNPKLA 1990
Query: 327 SNLMNLVMQFRKVCNHPELF 346
L N +Q RK+CNHP LF
Sbjct: 1991 KGLKNTYVQLRKICNHPYLF 2010
Score = 188 (71.2 bits), Expect = 9.4e-78, Sum P(2) = 9.4e-78
Identities = 35/61 (57%), Positives = 49/61 (80%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
L+ AGK +LD LL +LKA+GHRVL++SQMT++I++LE F Y+ Y+F+RLDGS+K E
Sbjct: 2021 LIRYAGKFDLLDRLLPKLKAAGHRVLIFSQMTQLINILEVFFAYKDYKFLRLDGSTKSDE 2080
Query: 554 R 554
R
Sbjct: 2081 R 2081
Score = 81 (33.6 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 34/135 (25%), Positives = 60/135 (44%)
Query: 343 PELFERRDAKAPLAMSC-EDYHRLYR------GRQME--REEGTILPEFPHVPRDPVILP 393
PEL+ + P C ED+ + + G ++E EE ++ + H P +L
Sbjct: 1877 PELWALLNFLLPTIFDCVEDFEQWFNAPFAQTGEKIEMNEEEQLLIIQRLHKVLRPFLLR 1936
Query: 394 QQPTYLPVCFFESTQNMVSPALKK-KIKIEDLIHS-------SSGGSIQLSNNIASNLMN 445
+ + + + ++ + + K+ DLI + SSGG+ + +A L N
Sbjct: 1937 RLKKEVEAQLPDKVEKVLKCDMSAFQAKMYDLIKTKGVSKLASSGGA-DGNPKLAKGLKN 1995
Query: 446 LVMQFRKVCNHPELF 460
+Q RK+CNHP LF
Sbjct: 1996 TYVQLRKICNHPYLF 2010
Score = 69 (29.3 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 30/129 (23%), Positives = 63/129 (48%)
Query: 351 AKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPV-ILPQQ---PTYLPVCFF-E 405
A P+ +S + + +Q+ + + PE P +P DP+ LP + P + + F E
Sbjct: 1156 ATQPMVVSQIQPTQQQQQQQIINQTPVVEPEPPSIPIDPLKSLPMETLIPKPMDIEFMLE 1215
Query: 406 STQNMVSPALKKKIK-IEDLIHSSSGGSIQ-LSNNIASNLMNLVMQFRKVCNHPELFERR 463
+N+VS + K++ + + I + G+I+ L I ++L ++++K E+ +
Sbjct: 1216 CKRNLVSQLISDKLEYLYESIPTLEDGTIEKLQETIQYKQLSL-LEYQKQLRR-EVLDAE 1273
Query: 464 DAKAPLAMS 472
+K+ L S
Sbjct: 1274 ISKSKLKKS 1282
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 659 (237.0 bits), Expect = 1.6e-77, Sum P(2) = 1.6e-77
Identities = 140/349 (40%), Positives = 209/349 (59%)
Query: 28 EVERPQPG-LFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAET 86
EV QP L G LK YQL+G+ W+ +LY+ +NGILADEMGLGKT+Q+I+ + H+ E
Sbjct: 403 EVVTEQPSILVGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEK 462
Query: 87 YDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDAS 146
GPFL+I P STL NW E ER+ P + Y G PQ RK L + ++
Sbjct: 463 KRQNGPFLVIVPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHP-------QVRHSN 515
Query: 147 FHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF-SCRNRLLLSGT 205
F V++T+Y+ ++ D +RIKW Y+I+DE +K++ S L + S R RL+L+GT
Sbjct: 516 FQVLLTTYEYIIKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGT 575
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI-ESHAENKTSIDERH----LSRLHM 260
P+QN++ ELWALL+F++P +F+S F+EWF+ + ++K + E + RLH
Sbjct: 576 PLQNNLPELWALLNFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIRRLHK 635
Query: 261 ILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK--IKIEDLIHSSSGGS 318
+L+PF+LRR+KKDVE EL DK+E ++ C ++ Q+ LY +KK + +ED +G
Sbjct: 636 VLRPFLLRRLKKDVEAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAKRGKTG-- 693
Query: 319 IQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYR 367
L N VMQ +K+CNHP +FE D + + + +Y L+R
Sbjct: 694 -------IKGLQNTVMQLKKICNHPFVFE--DVERSIDPTGFNYDMLWR 733
Score = 158 (60.7 bits), Expect = 1.6e-77, Sum P(2) = 1.6e-77
Identities = 26/63 (41%), Positives = 49/63 (77%)
Query: 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM 557
+GK +LD +L +L SGHR+L++ QMT++++++E+++ YR++R++RLDGS+K +R +
Sbjct: 735 SGKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKL 794
Query: 558 FAV 560
V
Sbjct: 795 LGV 797
Score = 72 (30.4 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 443 LMNLVMQFRKVCNHPELFE 461
L N VMQ +K+CNHP +FE
Sbjct: 697 LQNTVMQLKKICNHPFVFE 715
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 608 (219.1 bits), Expect = 3.1e-77, Sum P(3) = 3.1e-77
Identities = 122/353 (34%), Positives = 211/353 (59%)
Query: 2 DNVRHAVEVEKQRSQQFGSTTPSFSTEVERPQPG-LFRGNLKHYQLKGMNWLANLYDQGI 60
+ V+ + E++++ + ++++ QP L G LK YQL+G+ W+ +LY+ +
Sbjct: 432 EEVQPITDEEREKTDYY-EVAHRIKEKIDK-QPSILVGGTLKEYQLRGLEWMVSLYNNHL 489
Query: 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVP 120
NGILADEMGLGKT+QSI+ + ++ E GPFL+I P ST+ NW E E++ P +
Sbjct: 490 NGILADEMGLGKTIQSISLITYLYEVKKDIGPFLVIVPLSTITNWTLEFEKWAPSLNTII 549
Query: 121 YWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 180
Y G+P +R L+ + +F V++T+Y+ ++ D ++ W ++I+DE +
Sbjct: 550 YKGTPNQRHSLQH-------QIRVGNFDVLLTTYEYIIKDKSLLSKHDWAHMIIDEGHRM 602
Query: 181 KSSSS-MRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKD 239
K++ S + + + + RNRL+L+GTP+QN++ ELWALL+F++P +F+S F +WF+
Sbjct: 603 KNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTP 662
Query: 240 I-ESHAENKTSIDERH----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQ 294
+ + K + E + RLH +L+PF+LRR+KK+VE +L DK+E ++ C L+ Q
Sbjct: 663 FANTGTQEKLELTEEETLLIIRRLHKVLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQ 722
Query: 295 KLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
+ LY + K + + + + G+ + I L N +MQ RK+CNHP +F+
Sbjct: 723 QQLYQQMLKHNAL--FVGAGTEGATK--GGI-KGLNNKIMQLRKICNHPFVFD 770
Score = 167 (63.8 bits), Expect = 3.1e-77, Sum P(3) = 3.1e-77
Identities = 30/60 (50%), Positives = 47/60 (78%)
Query: 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM 557
AGK +LD +L + KASGHRVL++ QMT+++D++E+F+ + ++MRLDGS+K ER +M
Sbjct: 790 AGKFELLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEM 849
Score = 68 (29.0 bits), Expect = 3.1e-77, Sum P(3) = 3.1e-77
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 443 LMNLVMQFRKVCNHPELFE 461
L N +MQ RK+CNHP +F+
Sbjct: 752 LNNKIMQLRKICNHPFVFD 770
Score = 38 (18.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 326 ASNLMNLVMQFRKVCNHPE 344
++ L L+ ++R + NHP+
Sbjct: 52 SAQLEQLLYRYRAIQNHPK 70
Score = 38 (18.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 440 ASNLMNLVMQFRKVCNHPE 458
++ L L+ ++R + NHP+
Sbjct: 52 SAQLEQLLYRYRAIQNHPK 70
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 598 (215.6 bits), Expect = 4.0e-77, Sum P(3) = 4.0e-77
Identities = 126/322 (39%), Positives = 200/322 (62%)
Query: 33 QPG-LFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWG 91
QP L G LK YQ+KG+ W+ +LY+ +NGILADEMGLGKT+QSI+ + ++ E
Sbjct: 492 QPTILVGGKLKEYQMKGLEWMVSLYNNHLNGILADEMGLGKTIQSISLVTYLIEKKHE-N 550
Query: 92 PFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVI 151
FLII P ST+ NW E E++ P KV+ Y GS Q+R+ L+ D++ +F V++
Sbjct: 551 KFLIIVPLSTITNWTLEFEKWAPSIKVIVYKGSQQQRRSLQP--DIRY-----GNFQVLL 603
Query: 152 TSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSS-MRWKLLLGFSCRNRLLLSGTPIQNS 210
T+Y+ V+ + + + ++I+DE +K++ S + L + +NRL+L+GTP+QN+
Sbjct: 604 TTYEYVIRERPMLAKFHYSHMIIDEGHRMKNAQSKLSQTLRTYYKTKNRLILTGTPLQNN 663
Query: 211 MAELWALLHFIMPSMFDSHDEFNEWFSKDI-ESHAENKTSIDERH----LSRLHMILKPF 265
+ ELWALL+F++P +F+S F++WF+ + A+ K + E + RLH +L+PF
Sbjct: 664 LPELWALLNFVLPGIFNSVKSFDDWFNTPFANTGAQEKIELTEEESLLVIRRLHKVLRPF 723
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR+KKDVE +L DK+E ++ C L+ Q +LY + K + + + GG+ + I
Sbjct: 724 LLRRLKKDVEKDLPDKVEKVLKCNLSGLQYVLYQQMLKHNAL--FVGADVGGA---KSGI 778
Query: 326 ASNLMNLVMQFRKVCNHPELFE 347
L N +MQ RK+CNHP +FE
Sbjct: 779 -KGLNNKIMQLRKICNHPFVFE 799
Score = 172 (65.6 bits), Expect = 4.0e-77, Sum P(3) = 4.0e-77
Identities = 37/85 (43%), Positives = 60/85 (70%)
Query: 482 VFEEA---LLCHKLT--LVYD-AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFM 535
VFEE L +LT L++ +GK +LD +L + K SGHRVL++ QMT+++D++E+F+
Sbjct: 797 VFEEVESVLNSSRLTNDLIWRVSGKFELLDRVLPKFKKSGHRVLMFFQMTQIMDIMEDFL 856
Query: 536 VYRKYRFMRLDGSSKISERRDMFAV 560
++ +++RLDGS+K ER+DM V
Sbjct: 857 RWKDMKYLRLDGSTKAEERQDMLKV 881
Score = 71 (30.1 bits), Expect = 4.0e-77, Sum P(3) = 4.0e-77
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 443 LMNLVMQFRKVCNHPELFE 461
L N +MQ RK+CNHP +FE
Sbjct: 781 LNNKIMQLRKICNHPFVFE 799
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 575 (207.5 bits), Expect = 7.9e-77, Sum P(3) = 7.9e-77
Identities = 127/299 (42%), Positives = 185/299 (61%)
Query: 33 QPGLFRGN-LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWG 91
QP F G ++ YQ++GM WL L++ GINGILADEMGLGKTVQ IA + + + V G
Sbjct: 192 QPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQR-GVPG 250
Query: 92 PFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASF--H- 148
PFL+ P STL NW E +RF P+ + Y G+ QER+IL +K++H + + H
Sbjct: 251 PFLVCGPLSTLPNWMAEFKRFTPEIPTMLYHGTQQERRIL-----VKHIHERKGTLQIHP 305
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
VVITS+++ + D W+YLI+DE IK+ + L F+ N+LLL+GTP+Q
Sbjct: 306 VVITSFEIAMRDRTTLQNCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQ 365
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI--DERH---LSRLHMILK 263
N+++ELW+LL+F++P +FD F WF DI S +E I ER L LH IL
Sbjct: 366 NNLSELWSLLNFLLPDVFDDLKSFESWF--DITSLSETAEDIIAKEREQNVLHMLHQILT 423
Query: 264 PFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLS 322
PF+LRR+K DV E+ K E++VY PL+ +Q++ Y+A+ + I ++ SS +++LS
Sbjct: 424 PFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRT-IANMFGSSEKETVELS 481
Score = 161 (61.7 bits), Expect = 7.9e-77, Sum P(3) = 7.9e-77
Identities = 30/61 (49%), Positives = 44/61 (72%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV ++GK +LD +L LK GH+VL++SQMT+M+D+L ++ +R + F RLDGS SE
Sbjct: 572 LVTNSGKFLILDRMLPELKTRGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSE 631
Query: 554 R 554
R
Sbjct: 632 R 632
Score = 70 (29.7 bits), Expect = 7.9e-77, Sum P(3) = 7.9e-77
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 318 SIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
S+ + + + L N++M RK CNHP L E
Sbjct: 527 SVPIESEVNLKLQNIMMLLRKCCNHPYLIE 556
Score = 70 (29.7 bits), Expect = 7.9e-77, Sum P(3) = 7.9e-77
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 432 SIQLSNNIASNLMNLVMQFRKVCNHPELFE 461
S+ + + + L N++M RK CNHP L E
Sbjct: 527 SVPIESEVNLKLQNIMMLLRKCCNHPYLIE 556
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 561 (202.5 bits), Expect = 2.9e-76, Sum P(4) = 2.9e-76
Identities = 111/270 (41%), Positives = 172/270 (63%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L+ YQ++G+NWL +LY+ GINGILADEMGLGKT+Q+I+ L ++ ++ GP +++ P
Sbjct: 178 GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVP 237
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVV 158
STLHNW E +R+VP + V G ++R + D+ + V +TSY++++
Sbjct: 238 KSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVR--DV----LLPGEWDVCVTSYEMLI 291
Query: 159 SDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALL 218
+ F + W+YL++DEA IK+ S +++ F NRLLL+GTP+QN++ ELW+LL
Sbjct: 292 KEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLL 351
Query: 219 HFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENEL 278
+F++P +F+S D+F+ WF N D++ + RLHM+L+PF+LRRIK DVE L
Sbjct: 352 NFLLPDVFNSADDFDSWFDT-------NNCLGDQKLVERLHMVLRPFLLRRIKADVEKSL 404
Query: 279 SDKIEIMVYCPLTSRQKLLYSA-LKKKIKI 307
K E+ +Y L+ Q+ Y+ L K I I
Sbjct: 405 PPKKEVKIYVGLSKMQREWYTRILMKDIDI 434
Score = 395 (144.1 bits), Expect = 2.1e-47, Sum P(3) = 2.1e-47
Identities = 79/206 (38%), Positives = 127/206 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++++ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 282 VCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 341
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLR 268
N++ ELW+LL+F++P +F+S D+F+ WF N D++ + RLHM+L+PF+LR
Sbjct: 342 NNLHELWSLLNFLLPDVFNSADDFDSWFDT-------NNCLGDQKLVERLHMVLRPFLLR 394
Query: 269 RIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASN 328
RIK DVE L K E+ +Y L+ Q+ Y+ +I ++D+ +S G +
Sbjct: 395 RIKADVEKSLPPKKEVKIYVGLSKMQREWYT----RILMKDIDILNSAGKMD-----KMR 445
Query: 329 LMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 446 LLNILMQLRKCCNHPYLFDGAEPGPP 471
Score = 166 (63.5 bits), Expect = 2.9e-76, Sum P(4) = 2.9e-76
Identities = 30/63 (47%), Positives = 48/63 (76%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV ++GK+ VLD LL +LK G RVL++SQMT+++D+LE++ ++R Y + RLDG + E
Sbjct: 478 LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDE 537
Query: 554 RRD 556
R++
Sbjct: 538 RQE 540
Score = 76 (31.8 bits), Expect = 2.9e-76, Sum P(4) = 2.9e-76
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 443 LMNLVMQFRKVCNHPELFERRDAKAP 468
L+N++MQ RK CNHP LF+ + P
Sbjct: 446 LLNILMQLRKCCNHPYLFDGAEPGPP 471
Score = 41 (19.5 bits), Expect = 2.9e-76, Sum P(4) = 2.9e-76
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 3 NVRHAVEVEKQRSQQFGSTTPSFSTEVERPQP 34
+V +A + + + F + +P E++ P P
Sbjct: 47 SVGNAGPTDSEMEEVFDNASPGKQKEIQEPDP 78
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 574 (207.1 bits), Expect = 3.6e-76, Sum P(3) = 3.6e-76
Identities = 127/299 (42%), Positives = 183/299 (61%)
Query: 33 QPGLFRGN-LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWG 91
QP F G ++ YQ++GM WL L++ GINGILADEMGLGKTVQ IA + + + V G
Sbjct: 215 QPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQR-GVPG 273
Query: 92 PFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASF--H- 148
PFL+ P STL NW E +RF PD + Y G+ QER+ L +KN+H + + H
Sbjct: 274 PFLVCGPLSTLPNWMAEFQRFTPDIPTMLYHGTQQERRKL-----VKNIHKRKGTLQIHP 328
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
VVITS+++ + D W+YLI+DE IK+ + L F+ N+LLL+GTP+Q
Sbjct: 329 VVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQ 388
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI--DERH---LSRLHMILK 263
N+++ELW+LL+F++P +FD F WF DI S +E I ER L LH IL
Sbjct: 389 NNLSELWSLLNFLLPDVFDDLKSFESWF--DITSLSETAEDIIAKEREQNVLHMLHQILT 446
Query: 264 PFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLS 322
PF+LRR+K DV E+ K E++VY PL+ +Q++ Y+A+ + I ++ S +++LS
Sbjct: 447 PFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRT-IANMFGCSEKETVELS 504
Score = 165 (63.1 bits), Expect = 3.6e-76, Sum P(3) = 3.6e-76
Identities = 31/61 (50%), Positives = 45/61 (73%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV ++GK +LD +L LKA GH+VL++SQMT+M+D+L ++ +R + F RLDGS SE
Sbjct: 595 LVTNSGKFLILDRMLPELKARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSE 654
Query: 554 R 554
R
Sbjct: 655 R 655
Score = 67 (28.6 bits), Expect = 3.6e-76, Sum P(3) = 3.6e-76
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 318 SIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
+I + + + L N++M RK CNHP L E
Sbjct: 550 NIPVESEVNLKLQNIMMLLRKCCNHPYLIE 579
Score = 67 (28.6 bits), Expect = 3.6e-76, Sum P(3) = 3.6e-76
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 432 SIQLSNNIASNLMNLVMQFRKVCNHPELFE 461
+I + + + L N++M RK CNHP L E
Sbjct: 550 NIPVESEVNLKLQNIMMLLRKCCNHPYLIE 579
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 595 (214.5 bits), Expect = 4.2e-76, Sum P(2) = 4.2e-76
Identities = 119/311 (38%), Positives = 195/311 (62%)
Query: 41 LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS 100
LK YQ+KG+ W+ +LY+ +NGILADEMGLGKT+Q+I+ + ++ E GP+L+I P S
Sbjct: 533 LKPYQIKGLEWMVSLYNNNLNGILADEMGLGKTIQTISLVTYLMEVKQNNGPYLVIVPLS 592
Query: 101 TLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD 160
TL NWQ E ++ P + Y G+ R+ + + +F+V++T+Y+ V+ +
Sbjct: 593 TLSNWQNEFAKWAPSVTTIIYKGTKDARRRVEG-------QIRKGAFNVLMTTYEYVIKE 645
Query: 161 FKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGF-SCRNRLLLSGTPIQNSMAELWALLH 219
+I+W+Y+I+DE +K+ + +L GF ++RLLL+GTP+QN + ELWALL+
Sbjct: 646 KALLGKIRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGTPLQNKLPELWALLN 705
Query: 220 FIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH----LSRLHMILKPFMLRRIKKDVE 275
F++PS+F S F +WF+ + E K +++ + RLH +L+PF+LRR+KK+VE
Sbjct: 706 FLLPSIFSSCGTFEQWFNAPFATTGE-KVELNQEETMLIIRRLHKVLRPFLLRRLKKEVE 764
Query: 276 NELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQ 335
++L DK E ++ C ++ QK++Y ++K + ++ + SSG A +LMN V+
Sbjct: 765 SQLPDKTEYVIKCDQSALQKVIYRHMQKGLLLDAKM--SSG---------ARSLMNTVVH 813
Query: 336 FRKVCNHPELF 346
RK+CNHP LF
Sbjct: 814 LRKLCNHPFLF 824
Score = 215 (80.7 bits), Expect = 4.2e-76, Sum P(2) = 4.2e-76
Identities = 50/118 (42%), Positives = 75/118 (63%)
Query: 440 ASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAG 499
A +LMN V+ RK+CNHP LF + SC Y K+ E + L+ AG
Sbjct: 804 ARSLMNTVVHLRKLCNHPFLFPN------IEDSCRAYW--KV--NEV---NGTDLMRVAG 850
Query: 500 KLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM 557
KL +LD +L +LKA+GHR+L++ QMT M+++ E+F+ +R+Y ++RLDGS+K ER D+
Sbjct: 851 KLELLDRILPKLKATGHRILMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPDERGDL 908
Score = 38 (18.4 bits), Expect = 1.8e-57, Sum P(2) = 1.8e-57
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 343 PELFERRDAKAPLAMSCEDYHRLYRGRQMERE 374
P L E + + DY + R R+ RE
Sbjct: 1072 PRLLEEHEIPDDILKLSFDYEEMERAREEGRE 1103
Score = 38 (18.4 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 20/107 (18%), Positives = 45/107 (42%)
Query: 261 ILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQ 320
++K F L +I+ + +S I L R+ ++ + + ++K+ + + + ++
Sbjct: 150 LMKIFNLHQIRCNRPTTISVPSGIDPVGMLKQRENMIQNRIGLRMKLLNNLPADIPDHMK 209
Query: 321 LSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYR 367
L I + LV +V + +RD A++ Y R R
Sbjct: 210 LKAEIELRALRLVNLQTQVRSEVMACLKRDTTLETALNPYAYRRTKR 256
Score = 37 (18.1 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 400 PVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNI---ASNLMNLVMQFR 451
PV + +NM+ + ++K+ + + + ++L I A L+NL Q R
Sbjct: 175 PVGMLKQRENMIQNRIGLRMKLLNNLPADIPDHMKLKAEIELRALRLVNLQTQVR 229
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 618 (222.6 bits), Expect = 4.9e-76, Sum P(3) = 4.9e-76
Identities = 129/320 (40%), Positives = 196/320 (61%)
Query: 33 QPGLFRGN-LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWG 91
QP L G LK YQ+ G+ WL +LY + +NGILADEMGLGKTVQ+IAF+ + E +V
Sbjct: 615 QPDLMTGGKLKEYQVTGLEWLISLYTRNLNGILADEMGLGKTVQTIAFISFLYERMNVRE 674
Query: 92 PFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVI 151
PFL+++P ST+ NW E R+ P V+ Y G ER+ + ++A F VVI
Sbjct: 675 PFLVVAPLSTISNWVSEFARWSPKLHVIVYKGKQDERR------ETARTIPRNA-FCVVI 727
Query: 152 TSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSM 211
TS++ ++ D K R+ W Y+I+DE IK+ +S L + RNRLLL+GTP+QN +
Sbjct: 728 TSFEYIIKDRKTLGRVHWIYIIIDEGHRIKNKNSKLSVQLRQYHSRNRLLLTGTPLQNDL 787
Query: 212 AELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH----LSRLHMILKPFML 267
ELWALL+F++P++F+S D F WF+ ++ +N +++E ++RLH +L+ F+L
Sbjct: 788 GELWALLNFLLPTIFNSADTFQNWFNAPFQAKGKNLINVNEEESLIIINRLHQVLRFFLL 847
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIAS 327
RR+K DVE++L DK E ++ C +++ Q +Y +L + + S G S +L
Sbjct: 848 RRLKSDVESQLPDKKEKVIKCNMSALQIAMYRSLVEYGVLPIDPDSKEGRSGRLK---MK 904
Query: 328 NLMNLVMQFRKVCNHPELFE 347
N+V Q +K+CNHP LF+
Sbjct: 905 GFNNIVKQLQKICNHPYLFK 924
Score = 154 (59.3 bits), Expect = 4.9e-76, Sum P(3) = 4.9e-76
Identities = 27/61 (44%), Positives = 46/61 (75%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
L+ +GK +D +L ++ AS HRVL+++QMT++I+L+EE+ +++ F+RLDGS+K E
Sbjct: 933 LIRTSGKFDTMDQILTKMHASKHRVLIFTQMTEVINLMEEYFSLKEWTFLRLDGSTKPEE 992
Query: 554 R 554
R
Sbjct: 993 R 993
Score = 64 (27.6 bits), Expect = 4.9e-76, Sum P(3) = 4.9e-76
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 445 NLVMQFRKVCNHPELFE 461
N+V Q +K+CNHP LF+
Sbjct: 908 NIVKQLQKICNHPYLFK 924
Score = 41 (19.5 bits), Expect = 6.8e-08, Sum P(3) = 6.8e-08
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 237 SKDIESHAENKTSIDERHLSRLHMILKPFMLRR-IKKDVEN 276
+ +IE+ + + E+ + RL + KP + + I VEN
Sbjct: 270 NNEIETLTKEEELEKEKEIQRLRDLQKPIIYKSCIPASVEN 310
Score = 39 (18.8 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 16/64 (25%), Positives = 26/64 (40%)
Query: 437 NNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVY 496
N I ++ M L + + L+ER + + P + I V E A KL ++
Sbjct: 644 NGILADEMGLGKTVQTIAFISFLYERMNVREPFLVVAPLSTISNWVSEFARWSPKLHVIV 703
Query: 497 DAGK 500
GK
Sbjct: 704 YKGK 707
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 578 (208.5 bits), Expect = 1.3e-75, Sum P(3) = 1.3e-75
Identities = 120/302 (39%), Positives = 193/302 (63%)
Query: 24 SFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHI 83
SF+ P P + G ++ YQ+ G+NWL LY++GINGILADEMGLGKT+Q+I+ L ++
Sbjct: 260 SFNFFTSSP-PYIKSGTMRDYQVYGLNWLIQLYERGINGILADEMGLGKTLQTISLLGYL 318
Query: 84 AETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTK 143
+E + GP LII+P STL W +E R+ P +VV + GS +ER+ D+K
Sbjct: 319 SEYKGIRGPHLIIAPKSTLSGWAKEFTRWCPFLRVVRFHGSKEERE------DIKKNQLI 372
Query: 144 DASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLS 203
F V IT+Y++ + + F + W+Y+I+DEA IK+ +S+ K + F+ + RLL++
Sbjct: 373 FKKFDVCITTYEVAIREKSTFKKFSWRYIIIDEAHRIKNENSVLSKGVRMFNSQFRLLIT 432
Query: 204 GTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILK 263
GTP+QN++ ELW+LL+F++P +F S D+F++WF D+ ++ EN+ + + +LH +L+
Sbjct: 433 GTPLQNNLHELWSLLNFLLPDVFSSSDDFDKWF--DLANNTENQQEV----IDKLHKVLR 486
Query: 264 PFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSG--GSIQL 321
PF+LRRIK +VE L K EI ++ L++ QK Y L K ++ ++ + G G ++L
Sbjct: 487 PFLLRRIKTEVEKSLPPKKEIKLFVGLSTMQKEWYKRLLSK-DLDAVVVGAKGNTGRVRL 545
Query: 322 SN 323
N
Sbjct: 546 LN 547
Score = 385 (140.6 bits), Expect = 9.8e-50, Sum P(3) = 9.8e-50
Identities = 78/212 (36%), Positives = 133/212 (62%)
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFS 195
D+K F V IT+Y++ + + F + W+Y+I+DEA IK+ +S+ K + F+
Sbjct: 365 DIKKNQLIFKKFDVCITTYEVAIREKSTFKKFSWRYIIIDEAHRIKNENSVLSKGVRMFN 424
Query: 196 CRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHL 255
+ RLL++GTP+QN++ ELW+LL+F++P +F S D+F++WF D+ ++ EN+ + +
Sbjct: 425 SQFRLLITGTPLQNNLHELWSLLNFLLPDVFSSSDDFDKWF--DLANNTENQQEV----I 478
Query: 256 SRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSS 315
+LH +L+PF+LRRIK +VE L K EI ++ L++ QK Y L K ++ ++ +
Sbjct: 479 DKLHKVLRPFLLRRIKTEVEKSLPPKKEIKLFVGLSTMQKEWYKRLLSK-DLDAVVVGAK 537
Query: 316 GGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
G + ++ L+N+ MQ RK CNHP LF+
Sbjct: 538 GNTGRV------RLLNICMQLRKACNHPYLFD 563
Score = 174 (66.3 bits), Expect = 1.3e-75, Sum P(3) = 1.3e-75
Identities = 29/57 (50%), Positives = 50/57 (87%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
L+ ++GK+++LD LLK+LK G RVL++SQM++M+D+LE++M+YR Y++ R+DGS++
Sbjct: 576 LIDNSGKMALLDKLLKKLKERGSRVLIFSQMSRMLDILEDYMLYRGYKYARIDGSTE 632
Score = 73 (30.8 bits), Expect = 1.3e-75, Sum P(3) = 1.3e-75
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 443 LMNLVMQFRKVCNHPELFE 461
L+N+ MQ RK CNHP LF+
Sbjct: 545 LLNICMQLRKACNHPYLFD 563
Score = 38 (18.4 bits), Expect = 4.9e-11, Sum P(3) = 4.9e-11
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 303 KKIKIEDLIHSSSGGSIQLSNNIASNLMNLV 333
KK K + + SSS S +NN +N ++V
Sbjct: 199 KKTKTKSPVLSSSSASSSNNNNNNNNNGSIV 229
Score = 38 (18.4 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 417 KKIKIEDLIHSSSGGSIQLSNNIASNLMNLV 447
KK K + + SSS S +NN +N ++V
Sbjct: 199 KKTKTKSPVLSSSSASSSNNNNNNNNNGSIV 229
Score = 38 (18.4 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 19/76 (25%), Positives = 29/76 (38%)
Query: 393 PQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRK 452
PQ T +T + S ++ K I SS S + N N + VM+ +
Sbjct: 20 PQSTTPTTTTTTTTTTSSSSSSVGNKRNESPTISSSGNQSPKSMENDNENEEDEVMEEEE 79
Query: 453 VCNHPELFERRDAKAP 468
V ++ E DA P
Sbjct: 80 VDDNEENGNDEDAPHP 95
Score = 37 (18.1 bits), Expect = 6.1e-11, Sum P(3) = 6.1e-11
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 404 FESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASN 442
F S N + K K K ++ SSS S +NN +N
Sbjct: 188 FVSNSNNNNNTKKTKTK-SPVLSSSSASSSNNNNNNNNN 225
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 616 (221.9 bits), Expect = 2.7e-75, Sum P(2) = 2.7e-75
Identities = 123/344 (35%), Positives = 205/344 (59%)
Query: 12 KQRSQQFGSTTPSFSTEVERPQPGLFRGN----LKHYQLKGMNWLANLYDQGINGILADE 67
K + + +T E++ + GN LK YQ+KG+ W+ +L++ +NGILADE
Sbjct: 333 KMNIEDYYTTAHGVREEIKEQHFMMGGGNPSLKLKPYQIKGLEWMVSLFNNNLNGILADE 392
Query: 68 MGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQE 127
MGLGKT+Q+IAF+ ++ E GPFL+I P ST+ NWQ E +++ + ++ Y G +
Sbjct: 393 MGLGKTIQTIAFITYLMEIKKTSGPFLVIVPLSTVPNWQNEFDKWAANVHLIAYKGPKET 452
Query: 128 RKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMR 187
RK+ K F+V++T+++ V+ + +++W+Y+I+DE +K+
Sbjct: 453 RKVFEPI-------IKSGKFNVLLTTFEYVIREKALLGKLRWKYMIIDEGHRLKNQHCKL 505
Query: 188 WKLL-LGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAEN 246
++L F C+ RLL++GTP+QN + ELWALL+F++PS+F S F +WF+ + E
Sbjct: 506 TEMLNTRFQCQRRLLITGTPLQNKLPELWALLNFLLPSIFSSCSTFEQWFNAPFATTGEK 565
Query: 247 KTSIDERHL---SRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKK 303
E + RLH +L+PF+LRR+KK+VE+EL DK+E +V C +++ QK+LY ++K
Sbjct: 566 VELTQEETMLIIRRLHKVLRPFLLRRLKKEVESELPDKMEFVVRCDMSALQKVLYKHMQK 625
Query: 304 KIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
+ ++ G +N + +L N ++ RK+CNHP LFE
Sbjct: 626 GLLLD--------GK---TNTGSKSLRNTMIHLRKLCNHPFLFE 658
Score = 184 (69.8 bits), Expect = 2.7e-75, Sum P(2) = 2.7e-75
Identities = 49/140 (35%), Positives = 75/140 (53%)
Query: 426 HSSSGGSIQLSNNIAS-NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFE 484
H G + N S +L N ++ RK+CNHP LFE + SC + F
Sbjct: 622 HMQKGLLLDGKTNTGSKSLRNTMIHLRKLCNHPFLFENVEE------SCRN-------FW 668
Query: 485 EALLCHKLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMR 544
+A + L +GKL +L +L +L+A+GHRVL++ QMT M+ ++E+F+ +++R
Sbjct: 669 DARFISAVDLYRVSGKLELLSRILPKLQATGHRVLMFFQMTSMMTIVEDFLAGGTIQYLR 728
Query: 545 LDGSSKISERR---DMFAVP 561
LDGS+K ER D F P
Sbjct: 729 LDGSTKPDERGALLDKFNAP 748
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 622 (224.0 bits), Expect = 3.4e-75, Sum P(2) = 3.4e-75
Identities = 133/336 (39%), Positives = 202/336 (60%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L+ YQ++G+NWL +LY+ ++GILADEMGLGKT+Q+I+FL ++ + GPF++I P
Sbjct: 137 GKLREYQIQGLNWLISLYENRLSGILADEMGLGKTLQTISFLGYLRYIKHIDGPFIVIVP 196
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQER-KILRQFWDMKNLHTKDASFHVVITSYQLV 157
STL NW++E ++ PD VV G ++R I++ L+T A F V+ITS++++
Sbjct: 197 KSTLDNWRREFAKWTPDVNVVVLQGDKEQRASIIKD-----QLYT--AKFDVLITSFEMI 249
Query: 158 VSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWAL 217
+ + + +W+Y+++DEA IK+ S K++ F RNRLL++GTP+QN++ ELWAL
Sbjct: 250 LREKSALQKFRWEYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWAL 309
Query: 218 LHFIMPSMFDSHDEFNEWFSKDI--ESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVE 275
L+F++P +F D+F+E F E E K ++ +S LH +L PF+LRR+K DVE
Sbjct: 310 LNFLLPDVFGDSDQFDEAFDNQNSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVKADVE 369
Query: 276 NELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQ 335
L KIE VY +T Q Y L +K I D ++ G + L+N+VMQ
Sbjct: 370 KSLLPKIETNVYIGMTDMQVEWYKRLLEK-DI-DAVNGVVG-----KREGKTRLLNIVMQ 422
Query: 336 FRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQM 371
RK CNHP LF+ + P D H +Y +M
Sbjct: 423 LRKCCNHPYLFDGAEPGPPYTT---DEHLVYNSGKM 455
Score = 170 (64.9 bits), Expect = 3.4e-75, Sum P(2) = 3.4e-75
Identities = 28/61 (45%), Positives = 48/61 (78%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LVY++GK+ +LD +LK+ KA G RVL++SQM++++D+LE++ +R Y + R+DGS+ +
Sbjct: 448 LVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHED 507
Query: 554 R 554
R
Sbjct: 508 R 508
Score = 80 (33.2 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 441 SNLMNLVMQFRKVCNHPELFERRDAKAP 468
+ L+N+VMQ RK CNHP LF+ + P
Sbjct: 414 TRLLNIVMQLRKCCNHPYLFDGAEPGPP 441
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 622 (224.0 bits), Expect = 3.4e-75, Sum P(2) = 3.4e-75
Identities = 133/336 (39%), Positives = 202/336 (60%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L+ YQ++G+NWL +LY+ ++GILADEMGLGKT+Q+I+FL ++ + GPF++I P
Sbjct: 137 GKLREYQIQGLNWLISLYENRLSGILADEMGLGKTLQTISFLGYLRYIKHIDGPFIVIVP 196
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQER-KILRQFWDMKNLHTKDASFHVVITSYQLV 157
STL NW++E ++ PD VV G ++R I++ L+T A F V+ITS++++
Sbjct: 197 KSTLDNWRREFAKWTPDVNVVVLQGDKEQRASIIKD-----QLYT--AKFDVLITSFEMI 249
Query: 158 VSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWAL 217
+ + + +W+Y+++DEA IK+ S K++ F RNRLL++GTP+QN++ ELWAL
Sbjct: 250 LREKSALQKFRWEYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWAL 309
Query: 218 LHFIMPSMFDSHDEFNEWFSKDI--ESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVE 275
L+F++P +F D+F+E F E E K ++ +S LH +L PF+LRR+K DVE
Sbjct: 310 LNFLLPDVFGDSDQFDEAFDNQNSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVKADVE 369
Query: 276 NELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQ 335
L KIE VY +T Q Y L +K I D ++ G + L+N+VMQ
Sbjct: 370 KSLLPKIETNVYIGMTDMQVEWYKRLLEK-DI-DAVNGVVG-----KREGKTRLLNIVMQ 422
Query: 336 FRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQM 371
RK CNHP LF+ + P D H +Y +M
Sbjct: 423 LRKCCNHPYLFDGAEPGPPYTT---DEHLVYNSGKM 455
Score = 170 (64.9 bits), Expect = 3.4e-75, Sum P(2) = 3.4e-75
Identities = 28/61 (45%), Positives = 48/61 (78%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LVY++GK+ +LD +LK+ KA G RVL++SQM++++D+LE++ +R Y + R+DGS+ +
Sbjct: 448 LVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHED 507
Query: 554 R 554
R
Sbjct: 508 R 508
Score = 80 (33.2 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 441 SNLMNLVMQFRKVCNHPELFERRDAKAP 468
+ L+N+VMQ RK CNHP LF+ + P
Sbjct: 414 TRLLNIVMQLRKCCNHPYLFDGAEPGPP 441
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 574 (207.1 bits), Expect = 6.5e-75, Sum P(3) = 6.5e-75
Identities = 128/321 (39%), Positives = 192/321 (59%)
Query: 12 KQRSQQFGSTTPSFSTE-VERPQPGLFRGN-LKHYQLKGMNWLANLYDQGINGILADEMG 69
+ ++QF F+ + V QP +F G ++ YQ++GM WL L++ GINGILADEMG
Sbjct: 191 RHSAKQFLDPVRKFNGQPVPFQQPKIFTGGVMRWYQVEGMEWLRMLWENGINGILADEMG 250
Query: 70 LGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERK 129
LGKT+Q IA + + E V GPFL+ P STL NW E +RF P+ ++ Y G+ QER+
Sbjct: 251 LGKTIQCIATIALMVER-GVPGPFLVCGPLSTLPNWMSEFKRFTPEIPLMLYHGAQQERR 309
Query: 130 ILRQFWDMKNLHTKDASF--H-VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSM 186
L ++ +H + S H VVITS+++ + D W+YLI+DE IK+ +
Sbjct: 310 KL-----VRKIHGRQGSLKIHPVVITSFEIAMRDRNALQSCFWKYLIVDEGHRIKNMNCR 364
Query: 187 RWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAEN 246
+ L F+ N+LLL+GTP+QN++AELW+LL+F++P +FD F WF DI S E
Sbjct: 365 LIRELKRFNADNKLLLTGTPLQNNLAELWSLLNFLLPDVFDDLKSFESWF--DITSITET 422
Query: 247 KTSI-----DERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSAL 301
I ++ L LH IL PF+LRR+K DV E+ K E++VY PL +Q+ Y+A+
Sbjct: 423 AEDIIAKEKEQNILHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLAKKQETFYTAI 482
Query: 302 KKKIKIEDLIHSSSGGSIQLS 322
+ I +L+ ++ ++LS
Sbjct: 483 VNRT-IRNLLGNNEEEVVELS 502
Score = 152 (58.6 bits), Expect = 6.5e-75, Sum P(3) = 6.5e-75
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV ++GK +LD +L LK GH+VL++SQMT M+D+L ++ R ++F RLDGS S+
Sbjct: 594 LVKNSGKFLLLDRMLPELKKRGHKVLMFSQMTMMLDILMDYCYLRGFKFSRLDGSMSYSD 653
Query: 554 RRD 556
R +
Sbjct: 654 REE 656
Score = 68 (29.0 bits), Expect = 6.5e-75, Sum P(3) = 6.5e-75
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 318 SIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
S+ + + + L N++M RK CNHP L E
Sbjct: 549 SMPMDSEVNLKLQNIMMLLRKCCNHPYLIE 578
Score = 68 (29.0 bits), Expect = 6.5e-75, Sum P(3) = 6.5e-75
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 432 SIQLSNNIASNLMNLVMQFRKVCNHPELFE 461
S+ + + + L N++M RK CNHP L E
Sbjct: 549 SMPMDSEVNLKLQNIMMLLRKCCNHPYLIE 578
Score = 38 (18.4 bits), Expect = 9.1e-09, Sum P(3) = 9.1e-09
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSG 316
+ S++++L ++ KK K+E+ SS+G
Sbjct: 141 IMSKEEIL--SVAKKSKVENQDESSAG 165
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 575 (207.5 bits), Expect = 7.0e-75, Sum P(3) = 7.0e-75
Identities = 123/315 (39%), Positives = 193/315 (61%)
Query: 5 RHAVEVEKQRSQQFGSTTPSFSTEVERPQ--PGLFRGN-LKHYQLKGMNWLANLYDQGIN 61
RH E++ ++ S + S R + P +G L+ YQ++G+NWL +LY+ G+N
Sbjct: 149 RHR-RTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVN 207
Query: 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121
GILADEMGLGKT+Q+IA L ++ ++ GP +++ P STLHNW E +R+VP +V+ +
Sbjct: 208 GILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICF 267
Query: 122 WGSPQERK-ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 180
G R +R +M + V +TSY++V+ + F + W+YL++DEA I
Sbjct: 268 VGDKDVRAAFIRD--EMM-----PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRI 320
Query: 181 KSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI 240
K+ S +++ F NRLLL+GTP+QN++ ELWALL+F++P +F+S D+F+ WF
Sbjct: 321 KNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWF---- 376
Query: 241 ESHAENKTSI-DERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYS 299
+ K + D++ + RLH +LKPF+LRRIK DVE L K EI +Y L+ Q+ Y+
Sbjct: 377 ----DTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT 432
Query: 300 ALKKKIKIEDLIHSS 314
K +K D+++SS
Sbjct: 433 --KILMKDIDVLNSS 445
Score = 400 (145.9 bits), Expect = 5.5e-47, Sum P(2) = 5.5e-47
Identities = 83/207 (40%), Positives = 128/207 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++V+ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 289 VCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQ 348
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI-DERHLSRLHMILKPFML 267
N++ ELWALL+F++P +F+S D+F+ WF + K + D++ + RLH +LKPF+L
Sbjct: 349 NNLHELWALLNFLLPDVFNSADDFDSWF--------DTKNCLGDQKLVERLHAVLKPFLL 400
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIAS 327
RRIK DVE L K EI +Y L+ Q+ Y+ KI ++D+ +S G +
Sbjct: 401 RRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT----KILMKDIDVLNSSGKMD-----KM 451
Query: 328 NLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 452 RLLNILMQLRKCCNHPYLFDGAEPGPP 478
Score = 159 (61.0 bits), Expect = 7.0e-75, Sum P(3) = 7.0e-75
Identities = 31/71 (43%), Positives = 48/71 (67%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
+V ++GK+ LD LL R+K G RVL++SQMT+++D+LE++ ++R Y + RLDG + E
Sbjct: 485 IVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEE 544
Query: 554 RR---DMFAVP 561
R D F P
Sbjct: 545 REEAIDAFNAP 555
Score = 78 (32.5 bits), Expect = 7.0e-75, Sum P(3) = 7.0e-75
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 418 KIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAP 468
KI ++D+ +S G + L+N++MQ RK CNHP LF+ + P
Sbjct: 433 KILMKDIDVLNSSGKMD-----KMRLLNILMQLRKCCNHPYLFDGAEPGPP 478
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 666 (239.5 bits), Expect = 1.0e-74, Sum P(2) = 1.0e-74
Identities = 145/378 (38%), Positives = 222/378 (58%)
Query: 11 EKQRSQQFGSTTPSFSTEVERPQPGLF-RGNLKHYQLKGMNWLANLYDQGINGILADEMG 69
E+ ++ + EVE QP +F G LK YQLKG+ W+ +LY+ +NGILADEMG
Sbjct: 840 EEDKNLDYFKVAHRIHEEVE--QPKIFVGGTLKDYQLKGLEWMLSLYNNNLNGILADEMG 897
Query: 70 LGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERK 129
LGKT+Q+IAF+ ++ E + GPFLII P STL NW E E++ P K + Y G PQ RK
Sbjct: 898 LGKTIQTIAFITYLIEKKNQQGPFLIIVPLSTLTNWIMEFEKWAPSVKKIAYKGPPQLRK 957
Query: 130 ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSS-MRW 188
L+ + ++F+V++T+++ ++ D +RIKW ++I+DE IK++ S +
Sbjct: 958 TLQS-------QIRSSNFNVLLTTFEYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTS 1010
Query: 189 KLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI-ESHAENK 247
L + + RL+L+GTP+QN++ ELWALL+F++P +F+S F+EWF+ + ++K
Sbjct: 1011 TLSTYYHSQYRLILTGTPLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQDK 1070
Query: 248 TSIDERH----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKK 303
++E + RLH +L+PF+ RR+KKDVE EL DK+E ++ CPL+ Q LY +KK
Sbjct: 1071 IGLNEEEALLIIKRLHKVLRPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQMKK 1130
Query: 304 KIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYH 363
+ + G I L N VMQ +K+CNHP +FE D + + S +
Sbjct: 1131 HGML--FVDGEKG-----KTGI-KGLQNTVMQLKKICNHPFIFE--DVERAIDPSGTNVD 1180
Query: 364 RLYRGRQMEREEGTILPE 381
L+R ILP+
Sbjct: 1181 LLWRAAGKFELLDRILPK 1198
Score = 132 (51.5 bits), Expect = 1.0e-74, Sum P(2) = 1.0e-74
Identities = 22/62 (35%), Positives = 45/62 (72%)
Query: 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM 557
AGK +LD +L +L +GH+ L++ QMT+++ ++E+++ + ++++RLDGS+K +R +
Sbjct: 1186 AGKFELLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSL 1245
Query: 558 FA 559
A
Sbjct: 1246 LA 1247
Score = 73 (30.8 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 443 LMNLVMQFRKVCNHPELFE 461
L N VMQ +K+CNHP +FE
Sbjct: 1148 LQNTVMQLKKICNHPFIFE 1166
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 568 (205.0 bits), Expect = 1.5e-74, Sum P(3) = 1.5e-74
Identities = 126/299 (42%), Positives = 183/299 (61%)
Query: 33 QPGLFRGN-LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWG 91
QP F G ++ YQ++GM WL L++ GINGILADEMGLGKTVQ IA + + + V G
Sbjct: 214 QPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQR-GVPG 272
Query: 92 PFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASF--H- 148
PFL+ P STL NW E +RF P+ + Y GS QER+ L + ++H + + H
Sbjct: 273 PFLVCGPLSTLPNWMAEFQRFTPEIPTMLYHGSQQERRKL-----VNHIHKRKGTLQIHP 327
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
VVITS+++ + D W+YLI+DE IK+ + L F+ N+LLL+GTP+Q
Sbjct: 328 VVITSFEIAMRDRNVLQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQ 387
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI--DERH---LSRLHMILK 263
N+++ELW+LL+F++P +FD F WF DI S +E I ER L LH IL
Sbjct: 388 NNLSELWSLLNFLLPDVFDDLKSFESWF--DITSLSETAEDIIAKEREQNVLHMLHQILT 445
Query: 264 PFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLS 322
PF+LRR+K DV E+ K E++VY PL+ +Q++ Y+A+ + I ++ SS +++LS
Sbjct: 446 PFLLRRLKSDVALEVPPKREVVVYAPLSKKQEVFYTAIVNRT-ITNMFGSSEKETVELS 503
Score = 157 (60.3 bits), Expect = 1.5e-74, Sum P(3) = 1.5e-74
Identities = 29/61 (47%), Positives = 44/61 (72%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV ++GK +LD +L LK GH+VL++SQMT+M+D+L ++ +R + F RLDGS +E
Sbjct: 594 LVTNSGKFLILDRMLPELKIRGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYTE 653
Query: 554 R 554
R
Sbjct: 654 R 654
Score = 67 (28.6 bits), Expect = 1.5e-74, Sum P(3) = 1.5e-74
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 318 SIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
+I + + + L N++M RK CNHP L E
Sbjct: 549 NIPVESEVNLKLQNIMMLLRKCCNHPYLIE 578
Score = 67 (28.6 bits), Expect = 1.5e-74, Sum P(3) = 1.5e-74
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 432 SIQLSNNIASNLMNLVMQFRKVCNHPELFE 461
+I + + + L N++M RK CNHP L E
Sbjct: 549 NIPVESEVNLKLQNIMMLLRKCCNHPYLIE 578
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 570 (205.7 bits), Expect = 2.2e-74, Sum P(3) = 2.2e-74
Identities = 127/298 (42%), Positives = 181/298 (60%)
Query: 33 QPGLFRGN-LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWG 91
QP F G ++ YQ++GM WL L++ GINGILADEMGLGKTVQ IA + + + V G
Sbjct: 214 QPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQR-GVPG 272
Query: 92 PFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQER-KILRQFWDMKNLHTKDASFH-V 149
PFL+ P STL NW E +RF PD + Y G+ +ER K++R + K H V
Sbjct: 273 PFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGT----LQIHPV 328
Query: 150 VITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQN 209
VITS+++ + D W+YLI+DE IK+ + L F+ N+LLL+GTP+QN
Sbjct: 329 VITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQN 388
Query: 210 SMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI--DERH---LSRLHMILKP 264
+++ELW+LL+F++P +FD F WF DI S +E I ER L LH IL P
Sbjct: 389 NLSELWSLLNFLLPDVFDDLKSFESWF--DITSLSETAEDIIAKEREQNVLHMLHQILTP 446
Query: 265 FMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLS 322
F+LRR+K DV E+ K E++VY PL+ +Q++ Y+A+ + I ++ SS +I+LS
Sbjct: 447 FLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRT-IANMFGSSEKETIELS 503
Score = 153 (58.9 bits), Expect = 2.2e-74, Sum P(3) = 2.2e-74
Identities = 30/61 (49%), Positives = 42/61 (68%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV ++GK +LD +L LK GH+VL++SQMT M+D+L ++ R + F RLDGS SE
Sbjct: 594 LVTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSE 653
Query: 554 R 554
R
Sbjct: 654 R 654
Score = 67 (28.6 bits), Expect = 2.2e-74, Sum P(3) = 2.2e-74
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 318 SIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
+I + + + L N++M RK CNHP L E
Sbjct: 549 NIPVESEVNLKLQNIMMLLRKCCNHPYLIE 578
Score = 67 (28.6 bits), Expect = 2.2e-74, Sum P(3) = 2.2e-74
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 432 SIQLSNNIASNLMNLVMQFRKVCNHPELFE 461
+I + + + L N++M RK CNHP L E
Sbjct: 549 NIPVESEVNLKLQNIMMLLRKCCNHPYLIE 578
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 567 (204.7 bits), Expect = 2.4e-74, Sum P(3) = 2.4e-74
Identities = 118/307 (38%), Positives = 184/307 (59%)
Query: 5 RHAVEVEKQRSQQF---GSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGIN 61
RH E++ ++ S T + T E + G L+ YQ++G+NWL +LY+ GIN
Sbjct: 127 RHR-RTEQEEDEELLTESSKTTNVCTRFEESPSYVKWGKLRDYQVRGLNWLISLYENGIN 185
Query: 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121
GILADEMGLGKT+Q+I+ L ++ ++ GP +++ P STLHNW E +R+VP + V
Sbjct: 186 GILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPTLRAVCL 245
Query: 122 WGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIK 181
G +R + D+ + V +TSY++++ + F + W+YL++DEA IK
Sbjct: 246 IGDKDQRAAFVR--DV----LLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIK 299
Query: 182 SSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIE 241
+ S +++ F NRLLL+GTP+QN++ ELWALL+F++P +F+S ++F+ WF
Sbjct: 300 NEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDT--- 356
Query: 242 SHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSA- 300
N D++ + RLHM+L+PF+LRRIK DVE L K E+ +Y L+ Q+ Y+
Sbjct: 357 ----NNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRI 412
Query: 301 LKKKIKI 307
L K I I
Sbjct: 413 LMKDIDI 419
Score = 396 (144.5 bits), Expect = 6.1e-47, Sum P(2) = 6.1e-47
Identities = 79/206 (38%), Positives = 127/206 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++++ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 267 VCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 326
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLR 268
N++ ELWALL+F++P +F+S ++F+ WF N D++ + RLHM+L+PF+LR
Sbjct: 327 NNLHELWALLNFLLPDVFNSSEDFDSWFDT-------NNCLGDQKLVERLHMVLRPFLLR 379
Query: 269 RIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASN 328
RIK DVE L K E+ +Y L+ Q+ Y+ +I ++D+ +S G +
Sbjct: 380 RIKADVEKSLPPKKEVKIYVGLSKMQREWYT----RILMKDIDILNSAGKLD-----KMR 430
Query: 329 LMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 431 LLNILMQLRKCCNHPYLFDGAEPGPP 456
Score = 164 (62.8 bits), Expect = 2.4e-74, Sum P(3) = 2.4e-74
Identities = 30/62 (48%), Positives = 47/62 (75%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV ++GK+ VLD LL +LK G RVL++SQMT+++D+LE++ ++R Y + RLDG + E
Sbjct: 463 LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDE 522
Query: 554 RR 555
R+
Sbjct: 523 RQ 524
Score = 76 (31.8 bits), Expect = 2.4e-74, Sum P(3) = 2.4e-74
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 443 LMNLVMQFRKVCNHPELFERRDAKAP 468
L+N++MQ RK CNHP LF+ + P
Sbjct: 431 LLNILMQLRKCCNHPYLFDGAEPGPP 456
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 561 (202.5 bits), Expect = 3.0e-74, Sum P(3) = 3.0e-74
Identities = 111/270 (41%), Positives = 172/270 (63%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L+ YQ++G+NWL +LY+ GINGILADEMGLGKT+Q+I+ L ++ ++ GP +++ P
Sbjct: 177 GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVP 236
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVV 158
STLHNW E +R+VP + V G ++R + D+ + V +TSY++++
Sbjct: 237 KSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVR--DV----LLPGEWDVCVTSYEMLI 290
Query: 159 SDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALL 218
+ F + W+YL++DEA IK+ S +++ F NRLLL+GTP+QN++ ELW+LL
Sbjct: 291 KEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLL 350
Query: 219 HFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENEL 278
+F++P +F+S D+F+ WF N D++ + RLHM+L+PF+LRRIK DVE L
Sbjct: 351 NFLLPDVFNSADDFDSWFDT-------NNCLGDQKLVERLHMVLRPFLLRRIKADVEKSL 403
Query: 279 SDKIEIMVYCPLTSRQKLLYSA-LKKKIKI 307
K E+ +Y L+ Q+ Y+ L K I I
Sbjct: 404 PPKKEVKIYVGLSKMQREWYTRILMKDIDI 433
Score = 395 (144.1 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 79/206 (38%), Positives = 127/206 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++++ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 281 VCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 340
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLR 268
N++ ELW+LL+F++P +F+S D+F+ WF N D++ + RLHM+L+PF+LR
Sbjct: 341 NNLHELWSLLNFLLPDVFNSADDFDSWFDT-------NNCLGDQKLVERLHMVLRPFLLR 393
Query: 269 RIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASN 328
RIK DVE L K E+ +Y L+ Q+ Y+ +I ++D+ +S G +
Sbjct: 394 RIKADVEKSLPPKKEVKIYVGLSKMQREWYT----RILMKDIDILNSAGKMD-----KMR 444
Query: 329 LMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 445 LLNILMQLRKCCNHPYLFDGAEPGPP 470
Score = 170 (64.9 bits), Expect = 3.0e-74, Sum P(3) = 3.0e-74
Identities = 31/63 (49%), Positives = 48/63 (76%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV ++GK+ VLD LL +LK G RVL++SQMT+++D+LE++ ++R Y + RLDG + E
Sbjct: 477 LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDE 536
Query: 554 RRD 556
R+D
Sbjct: 537 RQD 539
Score = 76 (31.8 bits), Expect = 3.0e-74, Sum P(3) = 3.0e-74
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 443 LMNLVMQFRKVCNHPELFERRDAKAP 468
L+N++MQ RK CNHP LF+ + P
Sbjct: 445 LLNILMQLRKCCNHPYLFDGAEPGPP 470
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 561 (202.5 bits), Expect = 3.1e-74, Sum P(3) = 3.1e-74
Identities = 111/270 (41%), Positives = 172/270 (63%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L+ YQ++G+NWL +LY+ GINGILADEMGLGKT+Q+I+ L ++ ++ GP +++ P
Sbjct: 178 GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVP 237
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVV 158
STLHNW E +R+VP + V G ++R + D+ + V +TSY++++
Sbjct: 238 KSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVR--DV----LLPGEWDVCVTSYEMLI 291
Query: 159 SDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALL 218
+ F + W+YL++DEA IK+ S +++ F NRLLL+GTP+QN++ ELW+LL
Sbjct: 292 KEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLL 351
Query: 219 HFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENEL 278
+F++P +F+S D+F+ WF N D++ + RLHM+L+PF+LRRIK DVE L
Sbjct: 352 NFLLPDVFNSADDFDSWFDT-------NNCLGDQKLVERLHMVLRPFLLRRIKADVEKSL 404
Query: 279 SDKIEIMVYCPLTSRQKLLYSA-LKKKIKI 307
K E+ +Y L+ Q+ Y+ L K I I
Sbjct: 405 PPKKEVKIYVGLSKMQREWYTRILMKDIDI 434
Score = 395 (144.1 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 79/206 (38%), Positives = 127/206 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++++ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 282 VCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 341
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLR 268
N++ ELW+LL+F++P +F+S D+F+ WF N D++ + RLHM+L+PF+LR
Sbjct: 342 NNLHELWSLLNFLLPDVFNSADDFDSWFDT-------NNCLGDQKLVERLHMVLRPFLLR 394
Query: 269 RIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASN 328
RIK DVE L K E+ +Y L+ Q+ Y+ +I ++D+ +S G +
Sbjct: 395 RIKADVEKSLPPKKEVKIYVGLSKMQREWYT----RILMKDIDILNSAGKMD-----KMR 445
Query: 329 LMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 446 LLNILMQLRKCCNHPYLFDGAEPGPP 471
Score = 170 (64.9 bits), Expect = 3.1e-74, Sum P(3) = 3.1e-74
Identities = 31/63 (49%), Positives = 48/63 (76%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV ++GK+ VLD LL +LK G RVL++SQMT+++D+LE++ ++R Y + RLDG + E
Sbjct: 478 LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDE 537
Query: 554 RRD 556
R+D
Sbjct: 538 RQD 540
Score = 76 (31.8 bits), Expect = 3.1e-74, Sum P(3) = 3.1e-74
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 443 LMNLVMQFRKVCNHPELFERRDAKAP 468
L+N++MQ RK CNHP LF+ + P
Sbjct: 446 LLNILMQLRKCCNHPYLFDGAEPGPP 471
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 561 (202.5 bits), Expect = 4.5e-74, Sum P(3) = 4.5e-74
Identities = 123/299 (41%), Positives = 183/299 (61%)
Query: 33 QPGLFRGN-LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWG 91
QP F G ++ YQ++GM WL L++ GINGILADEMGLGKTVQ IA + + + V G
Sbjct: 197 QPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQR-GVPG 255
Query: 92 PFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASF--H- 148
PFL+ P STL NW E +RF P+ + Y G+ ++R+ L +KN+H + + H
Sbjct: 256 PFLVCGPLSTLPNWMAEFKRFTPEIPTLLYHGTREDRRKL-----VKNIHKRQGTLQIHP 310
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
VV+TS+++ + D W+YLI+DE IK+ + L F+ N+LLL+GTP+Q
Sbjct: 311 VVVTSFEIAMRDQNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQ 370
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI--DERH---LSRLHMILK 263
N+++ELW+LL+F++P +FD F WF DI S +E I ER L LH IL
Sbjct: 371 NNLSELWSLLNFLLPDVFDDLKSFESWF--DITSLSETAEDIIAKEREQNVLHMLHQILT 428
Query: 264 PFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLS 322
PF+LRR+K DV E+ K E++VY PL ++Q++ Y+A+ + I ++ S +++LS
Sbjct: 429 PFLLRRLKSDVALEVPPKREVVVYAPLCNKQEIFYTAIVNRT-IANMFGSCEKETVELS 486
Score = 154 (59.3 bits), Expect = 4.5e-74, Sum P(3) = 4.5e-74
Identities = 31/61 (50%), Positives = 42/61 (68%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV ++GK +LD +L LK GH+VLV+SQMT M+D+L ++ R + F RLDGS SE
Sbjct: 577 LVTNSGKFLILDRMLPELKKRGHKVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYSE 636
Query: 554 R 554
R
Sbjct: 637 R 637
Score = 71 (30.1 bits), Expect = 4.5e-74, Sum P(3) = 4.5e-74
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 317 GSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
G+I + + + L N++M RK CNHP + E
Sbjct: 531 GNIPIESEVNLKLRNIMMLLRKCCNHPYMIE 561
Score = 71 (30.1 bits), Expect = 4.5e-74, Sum P(3) = 4.5e-74
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 431 GSIQLSNNIASNLMNLVMQFRKVCNHPELFE 461
G+I + + + L N++M RK CNHP + E
Sbjct: 531 GNIPIESEVNLKLRNIMMLLRKCCNHPYMIE 561
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 558 (201.5 bits), Expect = 6.5e-74, Sum P(3) = 6.5e-74
Identities = 110/270 (40%), Positives = 172/270 (63%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L+ YQ++G+NWL +LY+ GINGILADEMGLGKT+Q+I+ L ++ ++ GP +++ P
Sbjct: 177 GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVP 236
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVV 158
STLHNW E +++VP + V G ++R + D+ + V +TSY++++
Sbjct: 237 KSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVR--DV----LLPGEWDVCVTSYEMLI 290
Query: 159 SDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALL 218
+ F + W+YL++DEA IK+ S +++ F NRLLL+GTP+QN++ ELW+LL
Sbjct: 291 KEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLL 350
Query: 219 HFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENEL 278
+F++P +F+S D+F+ WF N D++ + RLHM+L+PF+LRRIK DVE L
Sbjct: 351 NFLLPDVFNSADDFDSWFDT-------NNCLGDQKLVERLHMVLRPFLLRRIKADVEKSL 403
Query: 279 SDKIEIMVYCPLTSRQKLLYSA-LKKKIKI 307
K E+ +Y L+ Q+ Y+ L K I I
Sbjct: 404 PPKKEVKIYVGLSKMQREWYTRILMKDIDI 433
Score = 395 (144.1 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 79/206 (38%), Positives = 127/206 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++++ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 281 VCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 340
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLR 268
N++ ELW+LL+F++P +F+S D+F+ WF N D++ + RLHM+L+PF+LR
Sbjct: 341 NNLHELWSLLNFLLPDVFNSADDFDSWFDT-------NNCLGDQKLVERLHMVLRPFLLR 393
Query: 269 RIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASN 328
RIK DVE L K E+ +Y L+ Q+ Y+ +I ++D+ +S G +
Sbjct: 394 RIKADVEKSLPPKKEVKIYVGLSKMQREWYT----RILMKDIDILNSAGKMD-----KMR 444
Query: 329 LMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 445 LLNILMQLRKCCNHPYLFDGAEPGPP 470
Score = 170 (64.9 bits), Expect = 6.5e-74, Sum P(3) = 6.5e-74
Identities = 31/63 (49%), Positives = 48/63 (76%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV ++GK+ VLD LL +LK G RVL++SQMT+++D+LE++ ++R Y + RLDG + E
Sbjct: 477 LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDE 536
Query: 554 RRD 556
R+D
Sbjct: 537 RQD 539
Score = 76 (31.8 bits), Expect = 6.5e-74, Sum P(3) = 6.5e-74
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 443 LMNLVMQFRKVCNHPELFERRDAKAP 468
L+N++MQ RK CNHP LF+ + P
Sbjct: 445 LLNILMQLRKCCNHPYLFDGAEPGPP 470
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 561 (202.5 bits), Expect = 8.1e-74, Sum P(3) = 8.1e-74
Identities = 111/270 (41%), Positives = 172/270 (63%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L+ YQ++G+NWL +LY+ GINGILADEMGLGKT+Q+I+ L ++ ++ GP +++ P
Sbjct: 178 GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVP 237
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVV 158
STLHNW E +R+VP + V G ++R + D+ + V +TSY++++
Sbjct: 238 KSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVR--DV----LLPGEWDVCVTSYEMLI 291
Query: 159 SDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALL 218
+ F + W+YL++DEA IK+ S +++ F NRLLL+GTP+QN++ ELW+LL
Sbjct: 292 KEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLL 351
Query: 219 HFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENEL 278
+F++P +F+S D+F+ WF N D++ + RLHM+L+PF+LRRIK DVE L
Sbjct: 352 NFLLPDVFNSADDFDSWFDT-------NNCLGDQKLVERLHMVLRPFLLRRIKADVEKSL 404
Query: 279 SDKIEIMVYCPLTSRQKLLYSA-LKKKIKI 307
K E+ +Y L+ Q+ Y+ L K I I
Sbjct: 405 PPKKEVKIYVGLSKMQREWYTRILMKDIDI 434
Score = 395 (144.1 bits), Expect = 5.4e-47, Sum P(2) = 5.4e-47
Identities = 79/206 (38%), Positives = 127/206 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++++ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 282 VCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 341
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLR 268
N++ ELW+LL+F++P +F+S D+F+ WF N D++ + RLHM+L+PF+LR
Sbjct: 342 NNLHELWSLLNFLLPDVFNSADDFDSWFDT-------NNCLGDQKLVERLHMVLRPFLLR 394
Query: 269 RIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASN 328
RIK DVE L K E+ +Y L+ Q+ Y+ +I ++D+ +S G +
Sbjct: 395 RIKADVEKSLPPKKEVKIYVGLSKMQREWYT----RILMKDIDILNSAGKMD-----KMR 445
Query: 329 LMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 446 LLNILMQLRKCCNHPYLFDGAEPGPP 471
Score = 166 (63.5 bits), Expect = 8.1e-74, Sum P(3) = 8.1e-74
Identities = 30/63 (47%), Positives = 48/63 (76%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV ++GK+ VLD LL +LK G RVL++SQMT+++D+LE++ ++R Y + RLDG + E
Sbjct: 478 LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDE 537
Query: 554 RRD 556
R++
Sbjct: 538 RQE 540
Score = 76 (31.8 bits), Expect = 8.1e-74, Sum P(3) = 8.1e-74
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 443 LMNLVMQFRKVCNHPELFERRDAKAP 468
L+N++MQ RK CNHP LF+ + P
Sbjct: 446 LLNILMQLRKCCNHPYLFDGAEPGPP 471
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 561 (202.5 bits), Expect = 8.1e-74, Sum P(3) = 8.1e-74
Identities = 111/270 (41%), Positives = 172/270 (63%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L+ YQ++G+NWL +LY+ GINGILADEMGLGKT+Q+I+ L ++ ++ GP +++ P
Sbjct: 178 GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVP 237
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVV 158
STLHNW E +R+VP + V G ++R + D+ + V +TSY++++
Sbjct: 238 KSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVR--DV----LLPGEWDVCVTSYEMLI 291
Query: 159 SDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALL 218
+ F + W+YL++DEA IK+ S +++ F NRLLL+GTP+QN++ ELW+LL
Sbjct: 292 KEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLL 351
Query: 219 HFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENEL 278
+F++P +F+S D+F+ WF N D++ + RLHM+L+PF+LRRIK DVE L
Sbjct: 352 NFLLPDVFNSADDFDSWFDT-------NNCLGDQKLVERLHMVLRPFLLRRIKADVEKSL 404
Query: 279 SDKIEIMVYCPLTSRQKLLYSA-LKKKIKI 307
K E+ +Y L+ Q+ Y+ L K I I
Sbjct: 405 PPKKEVKIYVGLSKMQREWYTRILMKDIDI 434
Score = 395 (144.1 bits), Expect = 5.4e-47, Sum P(2) = 5.4e-47
Identities = 79/206 (38%), Positives = 127/206 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++++ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 282 VCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 341
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLR 268
N++ ELW+LL+F++P +F+S D+F+ WF N D++ + RLHM+L+PF+LR
Sbjct: 342 NNLHELWSLLNFLLPDVFNSADDFDSWFDT-------NNCLGDQKLVERLHMVLRPFLLR 394
Query: 269 RIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASN 328
RIK DVE L K E+ +Y L+ Q+ Y+ +I ++D+ +S G +
Sbjct: 395 RIKADVEKSLPPKKEVKIYVGLSKMQREWYT----RILMKDIDILNSAGKMD-----KMR 445
Query: 329 LMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 446 LLNILMQLRKCCNHPYLFDGAEPGPP 471
Score = 166 (63.5 bits), Expect = 8.1e-74, Sum P(3) = 8.1e-74
Identities = 30/63 (47%), Positives = 48/63 (76%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV ++GK+ VLD LL +LK G RVL++SQMT+++D+LE++ ++R Y + RLDG + E
Sbjct: 478 LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDE 537
Query: 554 RRD 556
R++
Sbjct: 538 RQE 540
Score = 76 (31.8 bits), Expect = 8.1e-74, Sum P(3) = 8.1e-74
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 443 LMNLVMQFRKVCNHPELFERRDAKAP 468
L+N++MQ RK CNHP LF+ + P
Sbjct: 446 LLNILMQLRKCCNHPYLFDGAEPGPP 471
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 609 (219.4 bits), Expect = 1.9e-73, Sum P(2) = 1.9e-73
Identities = 130/333 (39%), Positives = 201/333 (60%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L+ YQ++G+NWL +L++ ++GILADEMGLGKT+Q+I+FL ++ + GPFLII P
Sbjct: 182 GKLRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGYLRYVKQIEGPFLIIVP 241
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVV 158
STL NW++E ++ P+ V+ G R + ++N+ +A F V+ITSY++V+
Sbjct: 242 KSTLDNWRREFLKWTPNVNVLVLHGDKDTRADI-----VRNI-ILEARFDVLITSYEMVI 295
Query: 159 SDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALL 218
+ R+ WQY+++DEA IK+ S +++ F +NRLL++GTP+QN++ ELWALL
Sbjct: 296 REKNALKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALL 355
Query: 219 HFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENEL 278
+F++P +F + F+EWF ++ N E + +LH +L PF+LRR+K DVE L
Sbjct: 356 NFLLPDIFGDSELFDEWFEQN------NSEQDQEIVIQQLHSVLNPFLLRRVKADVEKSL 409
Query: 279 SDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRK 338
KIE VY +T Q Y +L +K I D ++ + G + L+N+VMQ RK
Sbjct: 410 LPKIETNVYVGMTDMQIQWYKSLLEK-DI-DAVNGAVG-----KREGKTRLLNIVMQLRK 462
Query: 339 VCNHPELFERRDAKAPLAMSCEDYHRLYRGRQM 371
CNHP LFE + P D H ++ +M
Sbjct: 463 CCNHPYLFEGAEPGPPYTT---DEHLIFNSGKM 492
Score = 169 (64.5 bits), Expect = 1.9e-73, Sum P(2) = 1.9e-73
Identities = 28/61 (45%), Positives = 48/61 (78%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
L++++GK+ +LD LLKRLK G RVL++SQM++++D+LE++ +R + + R+DGS+ E
Sbjct: 485 LIFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEE 544
Query: 554 R 554
R
Sbjct: 545 R 545
Score = 83 (34.3 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 441 SNLMNLVMQFRKVCNHPELFERRDAKAP 468
+ L+N+VMQ RK CNHP LFE + P
Sbjct: 451 TRLLNIVMQLRKCCNHPYLFEGAEPGPP 478
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 559 (201.8 bits), Expect = 3.3e-73, Sum P(3) = 3.3e-73
Identities = 111/271 (40%), Positives = 171/271 (63%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L+ YQ++G+NW+ +LY+ G+NGILADEMGLGKT+Q+IA L ++ ++ GP +++ P
Sbjct: 105 GTLRDYQVRGLNWMISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVP 164
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVV 158
STLHNW E +R+VP + V G R + D+ + V +TSY++V+
Sbjct: 165 KSTLHNWMNEFKRWVPSLRAVCLIGDKDARAAFIR--DVM----MPGEWDVCVTSYEMVI 218
Query: 159 SDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALL 218
+ F + W+YL++DEA IK+ S +++ F NRLLL+GTP+QN++ ELWALL
Sbjct: 219 KEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALL 278
Query: 219 HFIMPSMFDSHDEFNEWFSKDIESHAENKTSI-DERHLSRLHMILKPFMLRRIKKDVENE 277
+F++P +F+S D+F+ WF + K + D++ + RLH +LKPF+LRRIK +VE
Sbjct: 279 NFLLPDVFNSADDFDSWF--------DTKNCLGDQKLVERLHAVLKPFLLRRIKAEVEKS 330
Query: 278 LSDKIEIMVYCPLTSRQKLLYSA-LKKKIKI 307
L K E+ +Y L+ Q+ Y+ L K I I
Sbjct: 331 LPPKKEVKIYLGLSKMQREWYTRILMKDIDI 361
Score = 393 (143.4 bits), Expect = 4.2e-46, Sum P(2) = 4.2e-46
Identities = 80/207 (38%), Positives = 128/207 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++V+ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 209 VCVTSYEMVIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 268
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI-DERHLSRLHMILKPFML 267
N++ ELWALL+F++P +F+S D+F+ WF + K + D++ + RLH +LKPF+L
Sbjct: 269 NNLHELWALLNFLLPDVFNSADDFDSWF--------DTKNCLGDQKLVERLHAVLKPFLL 320
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIAS 327
RRIK +VE L K E+ +Y L+ Q+ Y+ +I ++D+ +S G +
Sbjct: 321 RRIKAEVEKSLPPKKEVKIYLGLSKMQREWYT----RILMKDIDILNSAGKMD-----KM 371
Query: 328 NLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 372 RLLNILMQLRKCCNHPYLFDGAEPGPP 398
Score = 159 (61.0 bits), Expect = 3.3e-73, Sum P(3) = 3.3e-73
Identities = 31/71 (43%), Positives = 49/71 (69%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
L+ ++GK+ VLD LL +L+ G RVL++SQMT+++D+LE++ ++R Y + RLDG + E
Sbjct: 405 LITNSGKMLVLDKLLAKLREQGSRVLLFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 464
Query: 554 RR---DMFAVP 561
R D F P
Sbjct: 465 REEAIDTFNAP 475
Score = 76 (31.8 bits), Expect = 3.3e-73, Sum P(3) = 3.3e-73
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 443 LMNLVMQFRKVCNHPELFERRDAKAP 468
L+N++MQ RK CNHP LF+ + P
Sbjct: 373 LLNILMQLRKCCNHPYLFDGAEPGPP 398
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 599 (215.9 bits), Expect = 4.8e-73, Sum P(2) = 4.8e-73
Identities = 129/340 (37%), Positives = 197/340 (57%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGN-LKHYQLKGMNWLANLYDQGINGILADEMGLGKTV 74
+QF S +V + QP L +G L+ YQL+G+ W+ +LY+ NGILADEMGLGKT+
Sbjct: 361 RQFNLAIHSIQEKVTK-QPSLLQGGELRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTI 419
Query: 75 QSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQF 134
Q+IA + ++ E+ D+ GP LI++P + L NW+ E + P Y GS ++R +R
Sbjct: 420 QTIALIAYLLESKDLHGPHLILAPKAVLPNWENEFALWAPSISAFLYDGSKEKRTEIRA- 478
Query: 135 WDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLL-LG 193
F+V+IT Y L++ D + +I W Y+I+DE +K+ K L G
Sbjct: 479 ------RIAGGKFNVLITHYDLIMRDKAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTG 532
Query: 194 FSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDER 253
+ + RLLL+GTPIQNS+ ELW+LL+F++P +F+S F EWF+ + + + DE
Sbjct: 533 YRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSIHNFEEWFNTPF-AECGSASLTDEE 591
Query: 254 HL---SRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDL 310
L +RLH +++PF+LRR K +VE L K ++++ C +++ QKL Y + ++
Sbjct: 592 ELLIINRLHHVIRPFLLRRKKSEVEKFLPGKTQVILKCDMSAWQKLYYKQVTDVGRVG-- 649
Query: 311 IHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRD 350
+HS +G S +L NL MQ RK CNHP LF D
Sbjct: 650 LHSGNGKS--------KSLQNLTMQLRKCCNHPYLFVGAD 681
Score = 174 (66.3 bits), Expect = 4.8e-73, Sum P(2) = 4.8e-73
Identities = 32/67 (47%), Positives = 49/67 (73%)
Query: 488 LCHKLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDG 547
+C K +V +GK +LD LL +LK +GHR+L++SQMT++IDLLE ++ Y ++RLDG
Sbjct: 684 MCKKPEIVRASGKFELLDRLLPKLKKAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDG 743
Query: 548 SSKISER 554
S+K +R
Sbjct: 744 STKTDQR 750
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 614 (221.2 bits), Expect = 5.0e-73, Sum P(3) = 5.0e-73
Identities = 133/353 (37%), Positives = 216/353 (61%)
Query: 2 DNVRHAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGIN 61
D +H +E ++++ S + L G L+ YQ+ G+ WL +LY+ +N
Sbjct: 719 DQAKHYLE----SNEKYYLMAHSIKENINEQPSSLVGGKLREYQMNGLRWLVSLYNNHLN 774
Query: 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121
GILADEMGLGKTVQ I+ +C++ ET + GPFL++ P+S L WQ E+ + P + Y
Sbjct: 775 GILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWQSEINFWAPSIHKIVY 834
Query: 122 WGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVS--DFKYFNRIKWQYLILDEAQA 179
G+P ER R+ + + +H K F+V++T+Y+ +++ D ++I W Y+I+DE
Sbjct: 835 CGTPDER---RKLFKEQIVHQK---FNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHR 888
Query: 180 IKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKD 239
IK++S L + +RLLL+GTP+QN++ ELWALL+F++P++F+S ++F++WF+K
Sbjct: 889 IKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKP 948
Query: 240 IESHAENKTS----IDERHL---SRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTS 292
+S+ E+ +E +L +RLH +L+PF+LRR+K VENEL +KIE ++ C ++
Sbjct: 949 FQSNGESSAEEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLIRCEASA 1008
Query: 293 RQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPEL 345
QKLL +K+ +ED + GSI N + + N VM+ R +CNHP L
Sbjct: 1009 YQKLL---MKR---VEDNL-----GSI--GNAKSRAVHNSVMELRNICNHPYL 1048
Score = 169 (64.5 bits), Expect = 5.0e-73, Sum P(3) = 5.0e-73
Identities = 39/111 (35%), Positives = 65/111 (58%)
Query: 445 NLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLT-LVYDAGKLSV 503
N VM+ R +CNHP L + + + +IPK H L +V GKL +
Sbjct: 1034 NSVMELRNICNHPYLSQLHSEEV-------NNIIPK---------HFLPPIVRLCGKLEM 1077
Query: 504 LDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISER 554
LD +L +LKA+ HRVL +S MT+++D++E+++ + Y+++RLDG + +R
Sbjct: 1078 LDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDR 1128
Score = 40 (19.1 bits), Expect = 5.0e-73, Sum P(3) = 5.0e-73
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 547 GSSKISERRDMFAVPG 562
GSSK++ ++ +PG
Sbjct: 1967 GSSKVAAENELVKIPG 1982
Score = 39 (18.8 bits), Expect = 6.4e-73, Sum P(3) = 6.4e-73
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 546 DGSSKISERRDMFAVPGILTHQS 568
DGS SE R A+ G+ T S
Sbjct: 1703 DGSKSPSEGRTYTALQGVTTAPS 1725
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 553 (199.7 bits), Expect = 5.2e-73, Sum P(3) = 5.2e-73
Identities = 120/316 (37%), Positives = 188/316 (59%)
Query: 2 DNVRHAVEVEKQRSQQF---GSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQ 58
DN RH E++ ++ S S T + + G L+ YQ++G+NWL +LY+
Sbjct: 123 DN-RHR-RTEQEEDEELLSENSKATSVCTRFDDSPSYVKTGKLRDYQVRGLNWLISLYEN 180
Query: 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKV 118
GINGILADEMGLGKT+Q+I+ L ++ ++ GP +++ P STL+NW E +R+VP K
Sbjct: 181 GINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLKA 240
Query: 119 VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQ 178
V G +ER + D + V +TSY++++ + F + W+YL++DEA
Sbjct: 241 VCLIGDREERTAFIR--DT----LLPGEWDVCVTSYEMLIIERAVFKKFNWRYLVIDEAH 294
Query: 179 AIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSK 238
IK+ S +++ F NRLLL+GTP+QN++ ELWALL+F++P +F+S ++F+ WF
Sbjct: 295 RIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDAWFDT 354
Query: 239 DIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
N D + + RLH +L+PF+LRRIK DVE L K EI +Y L+ Q+ Y
Sbjct: 355 -------NNCLGDTKLVERLHTVLRPFLLRRIKADVEKSLLPKKEIKIYVGLSKMQREWY 407
Query: 299 SALKKKIKIEDLIHSS 314
+ K +K D+++S+
Sbjct: 408 T--KILMKDIDILNSA 421
Score = 384 (140.2 bits), Expect = 1.9e-45, Sum P(2) = 1.9e-45
Identities = 80/206 (38%), Positives = 125/206 (60%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++++ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 265 VCVTSYEMLIIERAVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 324
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLR 268
N++ ELWALL+F++P +F+S ++F+ WF N D + + RLH +L+PF+LR
Sbjct: 325 NNLHELWALLNFLLPDVFNSSEDFDAWFDT-------NNCLGDTKLVERLHTVLRPFLLR 377
Query: 269 RIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASN 328
RIK DVE L K EI +Y L+ Q+ Y+ KI ++D+ +S G +
Sbjct: 378 RIKADVEKSLLPKKEIKIYVGLSKMQREWYT----KILMKDIDILNSAGKMD-----KMR 428
Query: 329 LMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 429 LLNVLMQLRKCCNHPYLFDGAEPGPP 454
Score = 165 (63.1 bits), Expect = 5.2e-73, Sum P(3) = 5.2e-73
Identities = 31/64 (48%), Positives = 48/64 (75%)
Query: 492 LTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKI 551
L LV ++GK+ VLD LL +LK G RVL++SQMT+++D+LE++ ++R Y + RLDG +
Sbjct: 459 LHLVVNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPH 518
Query: 552 SERR 555
ER+
Sbjct: 519 EERQ 522
Score = 77 (32.2 bits), Expect = 5.2e-73, Sum P(3) = 5.2e-73
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 418 KIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAP 468
KI ++D+ +S G + L+N++MQ RK CNHP LF+ + P
Sbjct: 409 KILMKDIDILNSAGKMD-----KMRLLNVLMQLRKCCNHPYLFDGAEPGPP 454
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 614 (221.2 bits), Expect = 2.1e-72, Sum P(2) = 2.1e-72
Identities = 127/346 (36%), Positives = 208/346 (60%)
Query: 31 RPQPG-LFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDV 89
+ QP L G LK YQ+KG+ W+ +L++ +NGILADEMGLGKT+Q+I+ L ++ E ++
Sbjct: 756 KKQPSILVGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNI 815
Query: 90 WGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHV 149
GP+L+I P STL NW E ++ P + + + GSP ERK K + F V
Sbjct: 816 RGPYLVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERKA-------KQAKIRAGEFDV 868
Query: 150 VITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLG--FSCRNRLLLSGTPI 207
V+T+++ ++ + +++KW ++I+DE +K++ S + L L + RL+L+GTP+
Sbjct: 869 VLTTFEYIIKERALLSKVKWVHMIIDEGHRMKNAQS-KLSLTLNTHYHADYRLILTGTPL 927
Query: 208 QNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI-ESHAENKTSIDERH----LSRLHMIL 262
QN++ ELWALL+F++P +F+S F+EWF+ + ++K + E + RLH +L
Sbjct: 928 QNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIRRLHKVL 987
Query: 263 KPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKK--KIKIEDLIHSSSGGSIQ 320
+PF+LRR+KKDVE EL DK+E +V C +++ Q+++Y + K ++ I D + G
Sbjct: 988 RPFLLRRLKKDVEKELPDKVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQNNKKMVGLRG 1047
Query: 321 LSNNIASNLMNLVMQFRKVCNHPELFER-RDAKAPLAMSCEDYHRL 365
+N I MQ +K+CNHP +FE D P + +D R+
Sbjct: 1048 FNNQI--------MQLKKICNHPFVFEEVEDQINPTRETNDDIWRV 1085
Score = 163 (62.4 bits), Expect = 2.1e-72, Sum P(2) = 2.1e-72
Identities = 28/60 (46%), Positives = 47/60 (78%)
Query: 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM 557
AGK +LD +L +LKA+GHRVL++ QMT+++D++E+F+ Y +++RLDG +K ER ++
Sbjct: 1086 AGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSEL 1145
Score = 69 (29.3 bits), Expect = 1.7e-62, Sum P(2) = 1.7e-62
Identities = 23/100 (23%), Positives = 48/100 (48%)
Query: 445 NLVMQFRKVCNHPELFER-RDAKAPLAMSCEDY--VIPKLVFEEALLC------HKLTLV 495
N +MQ +K+CNHP +FE D P + +D V K + +L H++ +
Sbjct: 1050 NQIMQLKKICNHPFVFEEVEDQINPTRETNDDIWRVAGKFELLDRILPKLKATGHRVLIF 1109
Query: 496 YDAGKL-SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEF 534
+ ++ +++D L+ + R+ +++ + +LL F
Sbjct: 1110 FQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSELLRLF 1149
Score = 38 (18.4 bits), Expect = 3.1e-59, Sum P(2) = 3.1e-59
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 355 LAMSCEDYHRLYRGRQMEREEGTILPE 381
L + +D+H ++ ++ EG+++ E
Sbjct: 1613 LKETLQDFHLIFSNARIYNTEGSVVYE 1639
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 616 (221.9 bits), Expect = 3.1e-72, Sum P(2) = 3.1e-72
Identities = 131/347 (37%), Positives = 206/347 (59%)
Query: 9 EVEKQRSQQFGSTTPSFSTEVERPQPG-LFRGNLKHYQLKGMNWLANLYDQGINGILADE 67
E E +R + + E+ QP L G LK YQ+KG+ W+ +LY+ +NGILADE
Sbjct: 505 EGEGRRKIDYYAVAHRIKEEITE-QPSILVGGTLKEYQMKGLQWMISLYNNNLNGILADE 563
Query: 68 MGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQE 127
MGLGKT+Q+I+ + HI E GPFL+I P STL NW E E++ P + Y G P
Sbjct: 564 MGLGKTIQTISLITHIIERKRNNGPFLVIVPLSTLTNWNLEFEKWAPSVSRIVYKGPPNA 623
Query: 128 RKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSS-M 186
RK +Q N+ +F V++T+Y+ ++ D ++IKW ++I+DE +K++ S +
Sbjct: 624 RKQQQQ-----NIRW--GNFQVLLTTYEYIIKDRPILSKIKWTHMIVDEGHRMKNTQSKL 676
Query: 187 RWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI-ESHAE 245
L ++ R RL+L+GTP+QN++ ELWALL+F++P++F S F+EWF+ + +
Sbjct: 677 SSTLSQYYTSRYRLILTGTPLQNNLPELWALLNFVLPNIFKSVKSFDEWFNTPFANTGGQ 736
Query: 246 NKTSIDERH----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSAL 301
++ + E + RLH +L+PF+LRR+KKDVE +L DK E ++ C ++ Q L L
Sbjct: 737 DRMDLTEEEQLLVIRRLHKVLRPFLLRRLKKDVEKDLPDKQERVIKCRFSALQAKLNKQL 796
Query: 302 KKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFER 348
K+ ++ GG + + L N++MQ RK+CNHP +FE+
Sbjct: 797 ATHNKM--VVSDGKGGKVGMRG-----LSNMLMQLRKLCNHPFVFEQ 836
Score = 156 (60.0 bits), Expect = 3.1e-72, Sum P(2) = 3.1e-72
Identities = 27/60 (45%), Positives = 47/60 (78%)
Query: 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM 557
AGK +LD +L + KA+GHRVL++ QMT++++++E+F+ R +++RLDGS+K +R D+
Sbjct: 855 AGKFELLDRILPKFKATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDL 914
Score = 84 (34.6 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP + + C F + Q ++ L K+ ++ GG + + L N++MQ R
Sbjct: 773 LPDKQERVIKCRFSALQAKLNKQLATHNKM--VVSDGKGGKVGMRG-----LSNMLMQLR 825
Query: 452 KVCNHPELFER 462
K+CNHP +FE+
Sbjct: 826 KLCNHPFVFEQ 836
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 572 (206.4 bits), Expect = 5.7e-72, Sum P(3) = 5.7e-72
Identities = 124/284 (43%), Positives = 175/284 (61%)
Query: 29 VERPQPGLFRGN-LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY 87
V QP LF G ++ YQ++G+ WL L++ GINGILADEMGLGKT+Q IA + + E
Sbjct: 220 VPAQQPQLFTGGVMRWYQVEGIEWLRMLWENGINGILADEMGLGKTIQCIAHIAMMVEK- 278
Query: 88 DVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASF 147
V GPFL+++P STL NW E +RF P+ V+ Y G +ER L +K + S
Sbjct: 279 KVLGPFLVVAPLSTLPNWISEFKRFTPEVSVLLYHGPQKERLDL-----VKKIRQHQGSL 333
Query: 148 H---VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSG 204
VV+TS+++ + D K+ R W YLI+DE IK+ + + L N+LLL+G
Sbjct: 334 RMCPVVVTSFEIAMRDRKFLQRFHWNYLIVDEGHRIKNLNCRLVQELKMLPTDNKLLLTG 393
Query: 205 TPIQNSMAELWALLHFIMPSMFDSHDEFNEWFS-KDIESHAENKTSIDERH---LSRLHM 260
TP+QN+++ELW+LL+F++P +FD F WF I S AEN + +ER L LH+
Sbjct: 394 TPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDISTITSDAENIVA-NEREQNILHMLHL 452
Query: 261 ILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK 304
IL PF+LRR+K DV E+ K EI+VY PLT++Q+ Y A+ K
Sbjct: 453 ILTPFLLRRLKSDVTLEVPPKKEIVVYAPLTNKQEAFYMAIVNK 496
Score = 144 (55.7 bits), Expect = 5.7e-72, Sum P(3) = 5.7e-72
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV +GK +LD +L LK GH+VL++SQMT ++D+L ++ R Y + RLDGS ++
Sbjct: 610 LVEASGKFLILDRMLPELKKRGHKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYAD 669
Query: 554 R 554
R
Sbjct: 670 R 670
Score = 53 (23.7 bits), Expect = 5.7e-72, Sum P(3) = 5.7e-72
Identities = 22/115 (19%), Positives = 45/115 (39%)
Query: 353 APLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVS 412
APL E ++ + + + G E P P P++ + V + E + +
Sbjct: 480 APLTNKQEAFYMAIVNKTIAKLLGQEKDESAPAPLTPSGRPKRRSRKVVNYTEPNTDSMK 539
Query: 413 PALKKKIKIEDLIHSSSGGS------IQLSNNIASNLMNLVMQFRKVCNHPELFE 461
K K++ + S + + + + + L N++M ++ CNH L E
Sbjct: 540 DLEKYLEKVQQELDSQASSTPVVNVFMPVDAQVNLKLQNILMLLKRCCNHAYLIE 594
Score = 48 (22.0 bits), Expect = 1.9e-71, Sum P(3) = 1.9e-71
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 329 LMNLVMQFRKVCNHPELFE 347
L N++M ++ CNH L E
Sbjct: 576 LQNILMLLKRCCNHAYLIE 594
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 583 (210.3 bits), Expect = 3.4e-71, Sum P(3) = 3.4e-71
Identities = 133/309 (43%), Positives = 183/309 (59%)
Query: 11 EKQRSQQFGSTTPSFSTEVERPQPGLFRGN-LKHYQLKGMNWLANLYDQGINGILADEMG 69
+KQ+ + +T + QP L + LK YQL+G+NWL LY+ G+NGILADEMG
Sbjct: 191 KKQKKNEDTTTQNGAPDDAAIKQPRLLKNCILKPYQLEGLNWLITLYENGLNGILADEMG 250
Query: 70 LGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERK 129
LGKTVQSIA L I E D GPFL+ +P STL NW E +F PD V+ Y+G+ ++
Sbjct: 251 LGKTVQSIALLAFIYEM-DTKGPFLVTAPLSTLDNWMNEFAKFAPDLPVLKYYGTNGYKE 309
Query: 130 ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWK 189
+ +KN + +VITSY++++ D W++LI+DE +K+ + K
Sbjct: 310 RSAK---LKNFFKQHGGTGIVITSYEIILRDTDLIMSQNWKFLIVDEGHRLKNINCRLIK 366
Query: 190 LLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI-------ES 242
L + NRLLL+GTP+QN++AELW+LL+FIMP +F + FN+WF D S
Sbjct: 367 ELKKINTSNRLLLTGTPLQNNLAELWSLLNFIMPDIFADFEIFNKWFDFDSLNLGSGSNS 426
Query: 243 HAENKTSIDERH---LSRLHMILKPFMLRRIKKDV-ENELSDKIEIMVYCPLTSRQKLLY 298
A NK DE +S LH ILKPF+LRR+KK V N L K E ++ CP+TS Q+ Y
Sbjct: 427 EALNKLINDELQKNLISNLHTILKPFLLRRLKKVVLANILPPKREYIINCPMTSAQEKFY 486
Query: 299 SA-LKKKIK 306
A L K+K
Sbjct: 487 KAGLNGKLK 495
Score = 129 (50.5 bits), Expect = 3.4e-71, Sum P(3) = 3.4e-71
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 493 TLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKIS 552
TL+ +GKL +L L+ L + GH+VL+YSQ M+DL+E++ + R+DGS
Sbjct: 597 TLLKTSGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNE 656
Query: 553 ERRD 556
R+D
Sbjct: 657 TRKD 660
Score = 47 (21.6 bits), Expect = 3.4e-71, Sum P(3) = 3.4e-71
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 406 STQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELF 460
+T N ++P L ++++ L + +++SN L N++MQ R++ + LF
Sbjct: 537 NTDNKINPTL---LQMDKLYKKNL--QMEISNK---KLQNMMMQLRQIIDSTFLF 583
Score = 43 (20.2 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 245 ENKTSIDERHLSRLHMILKPFMLRRIKKDVENE 277
+N S DE H S+ K + KK +NE
Sbjct: 165 DNSNSDDEEHSSKKRKTKKKSITDFFKKQKKNE 197
Score = 39 (18.8 bits), Expect = 2.3e-70, Sum P(3) = 2.3e-70
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 319 IQLSNNIASNLMNLVMQFRKVCNHPELF 346
+++SN L N++MQ R++ + LF
Sbjct: 559 MEISNK---KLQNMMMQLRQIIDSTFLF 583
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 555 (200.4 bits), Expect = 5.0e-71, Sum P(3) = 5.0e-71
Identities = 118/310 (38%), Positives = 184/310 (59%)
Query: 2 DNVRHAVEVEKQRSQQFGSTTPSFSTEVER--PQPGLFR-GNLKHYQLKGMNWLANLYDQ 58
DN RH E++ ++ S + + R P + G L+ YQ++G+NW+ +LY+
Sbjct: 103 DN-RHR-RTEQEEDEELLSESRKADNVLVRFEESPSYIKNGTLRDYQIRGLNWMISLYEN 160
Query: 59 GINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKV 118
GINGILADEMGLGKT+Q+IA L ++ ++ GP +++ P STLHNW E +R+VP K
Sbjct: 161 GINGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPTLKA 220
Query: 119 VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQ 178
V G+ ER + D+ + V +TSY++V+ + F + W+YL++DEA
Sbjct: 221 VCLIGNKDERAAFIR--DVM----MPGEWDVCVTSYEMVIREKSVFKKFNWRYLVIDEAH 274
Query: 179 AIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSK 238
IK+ S ++ F NRLLL+GTP+QN++ ELW+LL+F++P +F+S +F+ WF
Sbjct: 275 RIKNEKSKLSEIAREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSASDFDSWFDT 334
Query: 239 DIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
+ D++ + RLH +L+PF+LRRIK +VE L K E+ +Y L+ Q+ Y
Sbjct: 335 NCLG--------DQKLVERLHAVLRPFLLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWY 386
Query: 299 SA-LKKKIKI 307
+ L K I I
Sbjct: 387 TRILMKDIDI 396
Score = 182 (69.1 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 43/125 (34%), Positives = 69/125 (55%)
Query: 230 DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCP 289
D FN + D +S + D++ + RLH +L+PF+LRRIK +VE L K E+ +Y
Sbjct: 320 DVFNS--ASDFDSWFDTNCLGDQKLVERLHAVLRPFLLRRIKAEVEKSLPPKKEVKIYLG 377
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 349
L+ Q+ Y+ +I ++D+ +S G + L+N++MQ RK CNHP LF+
Sbjct: 378 LSKMQREWYT----RILMKDIDILNSAGKMD-----KMRLLNILMQLRKCCNHPYLFDGA 428
Query: 350 DAKAP 354
+ P
Sbjct: 429 EPGPP 433
Score = 145 (56.1 bits), Expect = 5.0e-71, Sum P(3) = 5.0e-71
Identities = 28/71 (39%), Positives = 48/71 (67%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV ++GK+ LD LL +++ G RVL++SQMT+++D+LE++ ++R + + RLDG++
Sbjct: 440 LVINSGKMVALDKLLPKVQEQGSRVLIFSQMTRVLDILEDYCMWRGFEYCRLDGNTPHEA 499
Query: 554 RR---DMFAVP 561
R D F P
Sbjct: 500 REQAIDAFNAP 510
Score = 76 (31.8 bits), Expect = 5.0e-71, Sum P(3) = 5.0e-71
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 443 LMNLVMQFRKVCNHPELFERRDAKAP 468
L+N++MQ RK CNHP LF+ + P
Sbjct: 408 LLNILMQLRKCCNHPYLFDGAEPGPP 433
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 573 (206.8 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 122/315 (38%), Positives = 193/315 (61%)
Query: 5 RHAVEVEKQRSQQFGSTTPSFSTEVERPQ--PGLFRGN-LKHYQLKGMNWLANLYDQGIN 61
RH E++ ++ S + S R + P +G L+ YQ++G+NWL +LY+ G+N
Sbjct: 148 RHR-RTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVN 206
Query: 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121
GILADEMGLGKT+Q+IA L ++ ++ GP +++ P STLHNW E +R+VP +V+ +
Sbjct: 207 GILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICF 266
Query: 122 WGSPQERK-ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 180
G R +R +M + V +TSY++V+ + F + W+YL++DEA I
Sbjct: 267 VGDKDARAAFIRD--EMM-----PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRI 319
Query: 181 KSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI 240
K+ S +++ F NRLLL+GTP+QN++ ELWALL+F++P +F+S D+F+ WF
Sbjct: 320 KNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWF---- 375
Query: 241 ESHAENKTSI-DERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYS 299
+ K + D++ + RLH +LKPF+LRRIK DVE L K EI +Y L+ Q+ Y+
Sbjct: 376 ----DTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT 431
Query: 300 ALKKKIKIEDLIHSS 314
K +K D+++S+
Sbjct: 432 --KILMKDIDVLNSA 444
Score = 400 (145.9 bits), Expect = 4.6e-48, Sum P(2) = 4.6e-48
Identities = 83/207 (40%), Positives = 128/207 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++V+ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 288 VCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQ 347
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI-DERHLSRLHMILKPFML 267
N++ ELWALL+F++P +F+S D+F+ WF + K + D++ + RLH +LKPF+L
Sbjct: 348 NNLHELWALLNFLLPDVFNSADDFDSWF--------DTKNCLGDQKLVERLHAVLKPFLL 399
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIAS 327
RRIK DVE L K EI +Y L+ Q+ Y+ KI ++D+ +S G +
Sbjct: 400 RRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT----KILMKDIDVLNSAGKMD-----KM 450
Query: 328 NLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 451 RLLNILMQLRKCCNHPYLFDGAEPGPP 477
Score = 163 (62.4 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 32/71 (45%), Positives = 50/71 (70%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
+V ++GK+ VLD LL +LK G RVL++SQMT+++D+LE++ ++R Y + RLDG + E
Sbjct: 484 IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 543
Query: 554 RRDM---FAVP 561
R + F VP
Sbjct: 544 REEAIEAFNVP 554
Score = 80 (33.2 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 418 KIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYV 477
KI ++D+ +S G + L+N++MQ RK CNHP LF+ + P + ++++
Sbjct: 432 KILMKDIDVLNSAGKMD-----KMRLLNILMQLRKCCNHPYLFDGAEPGPPY--TTDEHI 484
Query: 478 IP---KLVFEEALL 488
+ K+V + LL
Sbjct: 485 VSNSGKMVVLDKLL 498
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 575 (207.5 bits), Expect = 2.7e-70, Sum P(2) = 2.7e-70
Identities = 123/315 (39%), Positives = 193/315 (61%)
Query: 5 RHAVEVEKQRSQQFGSTTPSFSTEVERPQ--PGLFRGN-LKHYQLKGMNWLANLYDQGIN 61
RH E++ ++ S + S R + P +G L+ YQ++G+NWL +LY+ G+N
Sbjct: 124 RHR-RTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVN 182
Query: 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121
GILADEMGLGKT+Q+IA L ++ ++ GP +++ P STLHNW E +R+VP +V+ +
Sbjct: 183 GILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICF 242
Query: 122 WGSPQERK-ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 180
G R +R +M + V +TSY++V+ + F + W+YL++DEA I
Sbjct: 243 VGDKDARAAFIRD--EMM-----PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRI 295
Query: 181 KSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI 240
K+ S +++ F NRLLL+GTP+QN++ ELWALL+F++P +F+S D+F+ WF
Sbjct: 296 KNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWF---- 351
Query: 241 ESHAENKTSI-DERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYS 299
+ K + D++ + RLH +LKPF+LRRIK DVE L K EI +Y L+ Q+ Y+
Sbjct: 352 ----DTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT 407
Query: 300 ALKKKIKIEDLIHSS 314
K +K D+++SS
Sbjct: 408 --KILMKDIDVLNSS 420
Score = 400 (145.9 bits), Expect = 2.5e-48, Sum P(2) = 2.5e-48
Identities = 83/207 (40%), Positives = 128/207 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++V+ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 264 VCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQ 323
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI-DERHLSRLHMILKPFML 267
N++ ELWALL+F++P +F+S D+F+ WF + K + D++ + RLH +LKPF+L
Sbjct: 324 NNLHELWALLNFLLPDVFNSADDFDSWF--------DTKNCLGDQKLVERLHAVLKPFLL 375
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIAS 327
RRIK DVE L K EI +Y L+ Q+ Y+ KI ++D+ +S G +
Sbjct: 376 RRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT----KILMKDIDVLNSSGKMD-----KM 426
Query: 328 NLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 427 RLLNILMQLRKCCNHPYLFDGAEPGPP 453
Score = 171 (65.3 bits), Expect = 2.7e-70, Sum P(2) = 2.7e-70
Identities = 31/65 (47%), Positives = 48/65 (73%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
+V ++GK+ VLD LL +LK G RVL++SQMT+++D+LE++ ++R Y + RLDG + E
Sbjct: 460 IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 519
Query: 554 RRDMF 558
R D F
Sbjct: 520 REDKF 524
Score = 80 (33.2 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 418 KIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYV 477
KI ++D+ +S G + L+N++MQ RK CNHP LF+ + P + ++++
Sbjct: 408 KILMKDIDVLNSSGKMD-----KMRLLNILMQLRKCCNHPYLFDGAEPGPPY--TTDEHI 460
Query: 478 IP---KLVFEEALL 488
+ K+V + LL
Sbjct: 461 VSNSGKMVVLDKLL 474
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 575 (207.5 bits), Expect = 3.9e-70, Sum P(2) = 3.9e-70
Identities = 123/315 (39%), Positives = 193/315 (61%)
Query: 5 RHAVEVEKQRSQQFGSTTPSFSTEVERPQ--PGLFRGN-LKHYQLKGMNWLANLYDQGIN 61
RH E++ ++ S + S R + P +G L+ YQ++G+NWL +LY+ G+N
Sbjct: 145 RHR-RTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVN 203
Query: 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121
GILADEMGLGKT+Q+IA L ++ ++ GP +++ P STLHNW E +R+VP +V+ +
Sbjct: 204 GILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICF 263
Query: 122 WGSPQERK-ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 180
G R +R +M + V +TSY++V+ + F + W+YL++DEA I
Sbjct: 264 VGDKDARAAFIRD--EMM-----PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRI 316
Query: 181 KSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI 240
K+ S +++ F NRLLL+GTP+QN++ ELWALL+F++P +F+S D+F+ WF
Sbjct: 317 KNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWF---- 372
Query: 241 ESHAENKTSI-DERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYS 299
+ K + D++ + RLH +LKPF+LRRIK DVE L K EI +Y L+ Q+ Y+
Sbjct: 373 ----DTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT 428
Query: 300 ALKKKIKIEDLIHSS 314
K +K D+++SS
Sbjct: 429 --KILMKDIDVLNSS 441
Score = 400 (145.9 bits), Expect = 3.1e-48, Sum P(2) = 3.1e-48
Identities = 83/207 (40%), Positives = 128/207 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++V+ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 285 VCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQ 344
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI-DERHLSRLHMILKPFML 267
N++ ELWALL+F++P +F+S D+F+ WF + K + D++ + RLH +LKPF+L
Sbjct: 345 NNLHELWALLNFLLPDVFNSADDFDSWF--------DTKNCLGDQKLVERLHAVLKPFLL 396
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIAS 327
RRIK DVE L K EI +Y L+ Q+ Y+ KI ++D+ +S G +
Sbjct: 397 RRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT----KILMKDIDVLNSSGKMD-----KM 447
Query: 328 NLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 448 RLLNILMQLRKCCNHPYLFDGAEPGPP 474
Score = 171 (65.3 bits), Expect = 3.9e-70, Sum P(2) = 3.9e-70
Identities = 31/65 (47%), Positives = 48/65 (73%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
+V ++GK+ VLD LL +LK G RVL++SQMT+++D+LE++ ++R Y + RLDG + E
Sbjct: 481 IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 540
Query: 554 RRDMF 558
R D F
Sbjct: 541 REDKF 545
Score = 80 (33.2 bits), Expect = 1.5e-60, Sum P(2) = 1.5e-60
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 418 KIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYV 477
KI ++D+ +S G + L+N++MQ RK CNHP LF+ + P + ++++
Sbjct: 429 KILMKDIDVLNSSGKMD-----KMRLLNILMQLRKCCNHPYLFDGAEPGPPY--TTDEHI 481
Query: 478 IP---KLVFEEALL 488
+ K+V + LL
Sbjct: 482 VSNSGKMVVLDKLL 495
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 573 (206.8 bits), Expect = 6.7e-70, Sum P(2) = 6.7e-70
Identities = 122/315 (38%), Positives = 193/315 (61%)
Query: 5 RHAVEVEKQRSQQFGSTTPSFSTEVERPQ--PGLFRGN-LKHYQLKGMNWLANLYDQGIN 61
RH E++ ++ S + S R + P +G L+ YQ++G+NWL +LY+ G+N
Sbjct: 148 RHR-RTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVN 206
Query: 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121
GILADEMGLGKT+Q+IA L ++ ++ GP +++ P STLHNW E +R+VP +V+ +
Sbjct: 207 GILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICF 266
Query: 122 WGSPQERK-ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 180
G R +R +M + V +TSY++V+ + F + W+YL++DEA I
Sbjct: 267 VGDKDARAAFIRD--EMM-----PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRI 319
Query: 181 KSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI 240
K+ S +++ F NRLLL+GTP+QN++ ELWALL+F++P +F+S D+F+ WF
Sbjct: 320 KNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWF---- 375
Query: 241 ESHAENKTSI-DERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYS 299
+ K + D++ + RLH +LKPF+LRRIK DVE L K EI +Y L+ Q+ Y+
Sbjct: 376 ----DTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT 431
Query: 300 ALKKKIKIEDLIHSS 314
K +K D+++S+
Sbjct: 432 --KILMKDIDVLNSA 444
Score = 400 (145.9 bits), Expect = 3.1e-48, Sum P(2) = 3.1e-48
Identities = 83/207 (40%), Positives = 128/207 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++V+ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 288 VCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQ 347
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI-DERHLSRLHMILKPFML 267
N++ ELWALL+F++P +F+S D+F+ WF + K + D++ + RLH +LKPF+L
Sbjct: 348 NNLHELWALLNFLLPDVFNSADDFDSWF--------DTKNCLGDQKLVERLHAVLKPFLL 399
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIAS 327
RRIK DVE L K EI +Y L+ Q+ Y+ KI ++D+ +S G +
Sbjct: 400 RRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT----KILMKDIDVLNSAGKMD-----KM 450
Query: 328 NLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 451 RLLNILMQLRKCCNHPYLFDGAEPGPP 477
Score = 171 (65.3 bits), Expect = 6.7e-70, Sum P(2) = 6.7e-70
Identities = 31/65 (47%), Positives = 48/65 (73%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
+V ++GK+ VLD LL +LK G RVL++SQMT+++D+LE++ ++R Y + RLDG + E
Sbjct: 484 IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 543
Query: 554 RRDMF 558
R D F
Sbjct: 544 REDKF 548
Score = 80 (33.2 bits), Expect = 2.6e-60, Sum P(2) = 2.6e-60
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 418 KIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYV 477
KI ++D+ +S G + L+N++MQ RK CNHP LF+ + P + ++++
Sbjct: 432 KILMKDIDVLNSAGKMD-----KMRLLNILMQLRKCCNHPYLFDGAEPGPPY--TTDEHI 484
Query: 478 IP---KLVFEEALL 488
+ K+V + LL
Sbjct: 485 VSNSGKMVVLDKLL 498
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 573 (206.8 bits), Expect = 7.5e-70, Sum P(2) = 7.5e-70
Identities = 122/315 (38%), Positives = 193/315 (61%)
Query: 5 RHAVEVEKQRSQQFGSTTPSFSTEVERPQ--PGLFRGN-LKHYQLKGMNWLANLYDQGIN 61
RH E++ ++ S + S R + P +G L+ YQ++G+NWL +LY+ G+N
Sbjct: 148 RHR-RTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVN 206
Query: 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121
GILADEMGLGKT+Q+IA L ++ ++ GP +++ P STLHNW E +R+VP +V+ +
Sbjct: 207 GILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICF 266
Query: 122 WGSPQERK-ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 180
G R +R +M + V +TSY++V+ + F + W+YL++DEA I
Sbjct: 267 VGDKDARAAFIRD--EMM-----PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRI 319
Query: 181 KSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI 240
K+ S +++ F NRLLL+GTP+QN++ ELWALL+F++P +F+S D+F+ WF
Sbjct: 320 KNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWF---- 375
Query: 241 ESHAENKTSI-DERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYS 299
+ K + D++ + RLH +LKPF+LRRIK DVE L K EI +Y L+ Q+ Y+
Sbjct: 376 ----DTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT 431
Query: 300 ALKKKIKIEDLIHSS 314
K +K D+++S+
Sbjct: 432 --KILMKDIDVLNSA 444
Score = 400 (145.9 bits), Expect = 3.3e-48, Sum P(2) = 3.3e-48
Identities = 83/207 (40%), Positives = 128/207 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++V+ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 288 VCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQ 347
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI-DERHLSRLHMILKPFML 267
N++ ELWALL+F++P +F+S D+F+ WF + K + D++ + RLH +LKPF+L
Sbjct: 348 NNLHELWALLNFLLPDVFNSADDFDSWF--------DTKNCLGDQKLVERLHAVLKPFLL 399
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIAS 327
RRIK DVE L K EI +Y L+ Q+ Y+ KI ++D+ +S G +
Sbjct: 400 RRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT----KILMKDIDVLNSAGKMD-----KM 450
Query: 328 NLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 451 RLLNILMQLRKCCNHPYLFDGAEPGPP 477
Score = 171 (65.3 bits), Expect = 7.5e-70, Sum P(2) = 7.5e-70
Identities = 31/65 (47%), Positives = 48/65 (73%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
+V ++GK+ VLD LL +LK G RVL++SQMT+++D+LE++ ++R Y + RLDG + E
Sbjct: 484 IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 543
Query: 554 RRDMF 558
R D F
Sbjct: 544 REDKF 548
Score = 80 (33.2 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 418 KIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYV 477
KI ++D+ +S G + L+N++MQ RK CNHP LF+ + P + ++++
Sbjct: 432 KILMKDIDVLNSAGKMD-----KMRLLNILMQLRKCCNHPYLFDGAEPGPPY--TTDEHI 484
Query: 478 IP---KLVFEEALL 488
+ K+V + LL
Sbjct: 485 VSNSGKMVVLDKLL 498
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 575 (207.5 bits), Expect = 8.5e-70, Sum P(2) = 8.5e-70
Identities = 123/353 (34%), Positives = 204/353 (57%)
Query: 5 RHAVEVEKQRSQQFGSTTPSFSTEVER--PQPGLFR-GNLKHYQLKGMNWLANLYDQGIN 61
RH + E++ ++ S + E+ R P + G ++ YQ++G+NW+ +LY+ GIN
Sbjct: 91 RHR-KTEQEEDEEL-LAEDSATKEIFRFDASPAYIKSGEMRDYQIRGLNWMISLYENGIN 148
Query: 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121
GILADEMGLGKT+Q+I+ L ++ + GP ++I P STL NW E +++ P + V
Sbjct: 149 GILADEMGLGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTLQNWVNEFKKWCPSLRAVCL 208
Query: 122 WGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIK 181
G R + D+ + V +TSY++ + + F + W+YL++DEA IK
Sbjct: 209 IGDQDTRNTFIR--DV----LMPGEWDVCVTSYEMCIREKSVFKKFNWRYLVIDEAHRIK 262
Query: 182 SSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIE 241
+ S ++L F NRLL++GTP+QN++ ELWALL+F++P +F+S ++F+EWF+
Sbjct: 263 NEKSKLSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSSEDFDEWFNT--- 319
Query: 242 SHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSAL 301
N D+ ++RLH +LKPF+LRR+K +VE L K E+ ++ L+ Q+ Y+
Sbjct: 320 ----NTCLGDDALITRLHAVLKPFLLRRLKAEVEKRLKPKKEMKIFVGLSKMQRDWYT-- 373
Query: 302 KKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAP 354
K+ ++D+ + G ++ L N++MQ RK NHP LF+ + P
Sbjct: 374 --KVLLKDIDVVNGAGKVE-----KMRLQNILMQLRKCTNHPYLFDGAEPGPP 419
Score = 167 (63.8 bits), Expect = 8.5e-70, Sum P(2) = 8.5e-70
Identities = 29/61 (47%), Positives = 47/61 (77%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LVY++GK+++LD LL +L+ G RVL++SQMT+M+D+LE++ +R Y + RLDG + +
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485
Query: 554 R 554
R
Sbjct: 486 R 486
Score = 66 (28.3 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 418 KIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAP 468
K+ ++D+ + G ++ L N++MQ RK NHP LF+ + P
Sbjct: 374 KVLLKDIDVVNGAGKVE-----KMRLQNILMQLRKCTNHPYLFDGAEPGPP 419
Score = 38 (18.4 bits), Expect = 3.3e-56, Sum P(2) = 3.3e-56
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 380 PEFPHVPRDPVILPQQPTYLPVCFFE 405
P+ P P+ P++ Q + P FE
Sbjct: 714 PKAPRPPKQPIV--QDFQFFPPRLFE 737
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 561 (202.5 bits), Expect = 9.0e-70, Sum P(2) = 9.0e-70
Identities = 113/288 (39%), Positives = 183/288 (63%)
Query: 29 VERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYD 88
V R P +G ++ YQ+ G+NWL +L++ GI+GILADEMGLGKT+Q+I+FL ++
Sbjct: 174 VFRESPAFIQGTMRDYQIAGLNWLISLHENGISGILADEMGLGKTLQTISFLGYLRHIMG 233
Query: 89 VWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFH 148
+ GP L+I P STL NW++E ++ P+ V+ G+ +ER L + L D SF
Sbjct: 234 ITGPHLVIVPKSTLDNWKREFGKWTPEVNVLVLQGAKEERAALIA----ERL--VDESFD 287
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V ITSY++++ + + + W+Y+I+DEA IK+ S +++ F+ RNRLL++GTP+Q
Sbjct: 288 VCITSYEMILREKSHLKKFAWEYIIIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTPLQ 347
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLR 268
N++ ELWALL+F++P +F + F++WFS E + S + + +LH +L+PF+LR
Sbjct: 348 NNIHELWALLNFLLPDVFGDSEAFDQWFS------GEGQDS--DTVVQQLHRVLRPFLLR 399
Query: 269 RIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSG 316
R+K DVE L K E+ +Y +T Q+ Y + +K I D ++ ++G
Sbjct: 400 RVKADVEKSLLPKKEVNLYLKMTEMQRTWYQKILEK-DI-DAVNGANG 445
Score = 403 (146.9 bits), Expect = 6.2e-50, Sum P(2) = 6.2e-50
Identities = 85/228 (37%), Positives = 136/228 (59%)
Query: 144 DASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLS 203
D SF V ITSY++++ + + + W+Y+I+DEA IK+ S +++ F+ RNRLL++
Sbjct: 283 DESFDVCITSYEMILREKSHLKKFAWEYIIIDEAHRIKNEESSLAQVIRLFNSRNRLLIT 342
Query: 204 GTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILK 263
GTP+QN++ ELWALL+F++P +F + F++WFS E + S + + +LH +L+
Sbjct: 343 GTPLQNNIHELWALLNFLLPDVFGDSEAFDQWFS------GEGQDS--DTVVQQLHRVLR 394
Query: 264 PFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSN 323
PF+LRR+K DVE L K E+ +Y +T Q+ Y + +K I D ++ ++G
Sbjct: 395 PFLLRRVKADVEKSLLPKKEVNLYLKMTEMQRTWYQKILEK-DI-DAVNGANG-----KR 447
Query: 324 NIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQM 371
+ L+N+VMQ RK CNHP LFE + P D H +Y +M
Sbjct: 448 ESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTT---DEHLVYNSGKM 492
Score = 184 (69.8 bits), Expect = 9.0e-70, Sum P(2) = 9.0e-70
Identities = 32/61 (52%), Positives = 51/61 (83%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LVY++GK+ VLD LLKRLKA G RVL++SQM++++D+LE++ V+R+Y++ R+DG + +
Sbjct: 485 LVYNSGKMVVLDKLLKRLKAQGSRVLIFSQMSRVLDILEDYCVFREYKYSRIDGGTAHED 544
Query: 554 R 554
R
Sbjct: 545 R 545
Score = 89 (36.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 391 ILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQF 450
+LP++ L + E + L+K I D ++ ++G + L+N+VMQ
Sbjct: 409 LLPKKEVNLYLKMTEMQRTWYQKILEKDI---DAVNGANG-----KRESKTRLLNIVMQL 460
Query: 451 RKVCNHPELFERRDAKAP 468
RK CNHP LFE + P
Sbjct: 461 RKCCNHPYLFEGAEPGPP 478
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 570 (205.7 bits), Expect = 2.7e-69, Sum P(2) = 2.7e-69
Identities = 121/315 (38%), Positives = 193/315 (61%)
Query: 5 RHAVEVEKQRSQQFGSTTPSFSTEVERPQ--PGLFRGN-LKHYQLKGMNWLANLYDQGIN 61
RH E++ ++ S + S R + P +G L+ YQ++G+NWL +LY+ G+N
Sbjct: 148 RHR-RTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVN 206
Query: 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121
GILADEMGLGKT+Q+IA L ++ ++ GP +++ P STLHNW E +R+VP +V+ +
Sbjct: 207 GILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICF 266
Query: 122 WGSPQERK-ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 180
G R +R +M + V +TSY++V+ + F + W+YL++DEA I
Sbjct: 267 VGDKDARAAFIRD--EMM-----PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRI 319
Query: 181 KSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI 240
K+ S +++ F NRLLL+GTP+QN++ ELWALL+F++P +F+S ++F+ WF
Sbjct: 320 KNEKSKLSEIVRDFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAEDFDSWF---- 375
Query: 241 ESHAENKTSI-DERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYS 299
+ K + D++ + RLH +LKPF+LRRIK DVE L K EI +Y L+ Q+ Y+
Sbjct: 376 ----DTKNCLGDQKLVERLHTVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT 431
Query: 300 ALKKKIKIEDLIHSS 314
K +K D+++S+
Sbjct: 432 --KILMKDIDVLNSA 444
Score = 397 (144.8 bits), Expect = 1.5e-47, Sum P(2) = 1.5e-47
Identities = 82/207 (39%), Positives = 128/207 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++V+ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 288 VCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRDFKSTNRLLLTGTPLQ 347
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI-DERHLSRLHMILKPFML 267
N++ ELWALL+F++P +F+S ++F+ WF + K + D++ + RLH +LKPF+L
Sbjct: 348 NNLHELWALLNFLLPDVFNSAEDFDSWF--------DTKNCLGDQKLVERLHTVLKPFLL 399
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIAS 327
RRIK DVE L K EI +Y L+ Q+ Y+ KI ++D+ +S G +
Sbjct: 400 RRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT----KILMKDIDVLNSAGKMD-----KM 450
Query: 328 NLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 451 RLLNILMQLRKCCNHPYLFDGAEPGPP 477
Score = 169 (64.5 bits), Expect = 2.7e-69, Sum P(2) = 2.7e-69
Identities = 32/77 (41%), Positives = 53/77 (68%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
+V ++GK+ VLD LL +LK G RVL++SQMT+++D+LE++ ++R Y + RLDG + E
Sbjct: 484 IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 543
Query: 554 RRDMFAVPGILTHQSVG 570
R ++ I+ H+ G
Sbjct: 544 REEILKDFKIIFHEYQG 560
Score = 80 (33.2 bits), Expect = 6.3e-60, Sum P(2) = 6.3e-60
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 418 KIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYV 477
KI ++D+ +S G + L+N++MQ RK CNHP LF+ + P + ++++
Sbjct: 432 KILMKDIDVLNSAGKMD-----KMRLLNILMQLRKCCNHPYLFDGAEPGPPY--TTDEHI 484
Query: 478 IP---KLVFEEALL 488
+ K+V + LL
Sbjct: 485 VSNSGKMVVLDKLL 498
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 571 (206.1 bits), Expect = 3.1e-69, Sum P(2) = 3.1e-69
Identities = 123/315 (39%), Positives = 192/315 (60%)
Query: 5 RHAVEVEKQRSQQFGSTTPSFSTEVERPQ--PGLFRGN-LKHYQLKGMNWLANLYDQGIN 61
RH E++ ++ S + S R + P +G L+ YQ++G+NWL +LY+ G+N
Sbjct: 125 RHR-RTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVN 183
Query: 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121
GILADEMGLGKT+Q+IA L ++ + GP +++ P STLHNW E +R+VP +V+ +
Sbjct: 184 GILADEMGLGKTLQTIALLGYLKHYRNFPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICF 243
Query: 122 WGSPQERK-ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 180
G R +R +M + V +TSY++V+ + F + W+YL++DEA I
Sbjct: 244 VGDKDVRAAFIRD--EMM-----PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRI 296
Query: 181 KSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI 240
K+ S +++ F NRLLL+GTP+QN++ ELWALL+F++P +F+S D+F+ WF
Sbjct: 297 KNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWF---- 352
Query: 241 ESHAENKTSI-DERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYS 299
+ K + D++ + RLH +LKPF+LRRIK DVE L K EI +Y L+ Q+ Y+
Sbjct: 353 ----DTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT 408
Query: 300 ALKKKIKIEDLIHSS 314
K +K D+++SS
Sbjct: 409 --KILMKDIDVLNSS 421
Score = 400 (145.9 bits), Expect = 9.6e-48, Sum P(2) = 9.6e-48
Identities = 83/207 (40%), Positives = 128/207 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++V+ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 265 VCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQ 324
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI-DERHLSRLHMILKPFML 267
N++ ELWALL+F++P +F+S D+F+ WF + K + D++ + RLH +LKPF+L
Sbjct: 325 NNLHELWALLNFLLPDVFNSADDFDSWF--------DTKNCLGDQKLVERLHAVLKPFLL 376
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIAS 327
RRIK DVE L K EI +Y L+ Q+ Y+ KI ++D+ +S G +
Sbjct: 377 RRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT----KILMKDIDVLNSSGKMD-----KM 427
Query: 328 NLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 428 RLLNILMQLRKCCNHPYLFDGAEPGPP 454
Score = 166 (63.5 bits), Expect = 3.1e-69, Sum P(2) = 3.1e-69
Identities = 29/65 (44%), Positives = 48/65 (73%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
+V ++GK+ LD LL R+K G RVL++SQMT+++D+LE++ ++R Y + RLDG + E
Sbjct: 461 IVSNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 520
Query: 554 RRDMF 558
R ++F
Sbjct: 521 RENLF 525
Score = 79 (32.9 bits), Expect = 4.6e-60, Sum P(2) = 4.6e-60
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 418 KIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYV 477
KI ++D+ +S G + L+N++MQ RK CNHP LF+ + P + ++++
Sbjct: 409 KILMKDIDVLNSSGKMD-----KMRLLNILMQLRKCCNHPYLFDGAEPGPPY--TTDEHI 461
Query: 478 IP---KLVFEEALL 488
+ K+V + LL
Sbjct: 462 VSNSGKMVALDKLL 475
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 573 (206.8 bits), Expect = 4.1e-69, Sum P(2) = 4.1e-69
Identities = 122/315 (38%), Positives = 193/315 (61%)
Query: 5 RHAVEVEKQRSQQFGSTTPSFSTEVERPQ--PGLFRGN-LKHYQLKGMNWLANLYDQGIN 61
RH E++ ++ S + S R + P +G L+ YQ++G+NWL +LY+ G+N
Sbjct: 148 RHR-RTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVN 206
Query: 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121
GILADEMGLGKT+Q+IA L ++ ++ GP +++ P STLHNW E +R+VP +V+ +
Sbjct: 207 GILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICF 266
Query: 122 WGSPQERK-ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 180
G R +R +M + V +TSY++V+ + F + W+YL++DEA I
Sbjct: 267 VGDKDARAAFIRD--EMM-----PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRI 319
Query: 181 KSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI 240
K+ S +++ F NRLLL+GTP+QN++ ELWALL+F++P +F+S D+F+ WF
Sbjct: 320 KNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWF---- 375
Query: 241 ESHAENKTSI-DERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYS 299
+ K + D++ + RLH +LKPF+LRRIK DVE L K EI +Y L+ Q+ Y+
Sbjct: 376 ----DTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT 431
Query: 300 ALKKKIKIEDLIHSS 314
K +K D+++S+
Sbjct: 432 --KILMKDIDVLNSA 444
Score = 400 (145.9 bits), Expect = 1.8e-47, Sum P(2) = 1.8e-47
Identities = 83/207 (40%), Positives = 128/207 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++V+ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 288 VCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQ 347
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI-DERHLSRLHMILKPFML 267
N++ ELWALL+F++P +F+S D+F+ WF + K + D++ + RLH +LKPF+L
Sbjct: 348 NNLHELWALLNFLLPDVFNSADDFDSWF--------DTKNCLGDQKLVERLHAVLKPFLL 399
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIAS 327
RRIK DVE L K EI +Y L+ Q+ Y+ KI ++D+ +S G +
Sbjct: 400 RRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT----KILMKDIDVLNSAGKMD-----KM 450
Query: 328 NLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 451 RLLNILMQLRKCCNHPYLFDGAEPGPP 477
Score = 164 (62.8 bits), Expect = 4.1e-69, Sum P(2) = 4.1e-69
Identities = 30/65 (46%), Positives = 48/65 (73%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
+V ++GK+ VLD LL +LK G RVL++SQMT+++D+LE++ ++R Y + RLDG + E
Sbjct: 484 IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 543
Query: 554 RRDMF 558
R + F
Sbjct: 544 RENGF 548
Score = 80 (33.2 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 418 KIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYV 477
KI ++D+ +S G + L+N++MQ RK CNHP LF+ + P + ++++
Sbjct: 432 KILMKDIDVLNSAGKMD-----KMRLLNILMQLRKCCNHPYLFDGAEPGPPY--TTDEHI 484
Query: 478 IP---KLVFEEALL 488
+ K+V + LL
Sbjct: 485 VSNSGKMVVLDKLL 498
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 573 (206.8 bits), Expect = 4.8e-69, Sum P(2) = 4.8e-69
Identities = 122/315 (38%), Positives = 193/315 (61%)
Query: 5 RHAVEVEKQRSQQFGSTTPSFSTEVERPQ--PGLFRGN-LKHYQLKGMNWLANLYDQGIN 61
RH E++ ++ S + S R + P +G L+ YQ++G+NWL +LY+ G+N
Sbjct: 148 RHR-RTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVN 206
Query: 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121
GILADEMGLGKT+Q+IA L ++ ++ GP +++ P STLHNW E +R+VP +V+ +
Sbjct: 207 GILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICF 266
Query: 122 WGSPQERK-ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 180
G R +R +M + V +TSY++V+ + F + W+YL++DEA I
Sbjct: 267 VGDKDARAAFIRD--EMM-----PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRI 319
Query: 181 KSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI 240
K+ S +++ F NRLLL+GTP+QN++ ELWALL+F++P +F+S D+F+ WF
Sbjct: 320 KNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWF---- 375
Query: 241 ESHAENKTSI-DERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYS 299
+ K + D++ + RLH +LKPF+LRRIK DVE L K EI +Y L+ Q+ Y+
Sbjct: 376 ----DTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT 431
Query: 300 ALKKKIKIEDLIHSS 314
K +K D+++S+
Sbjct: 432 --KILMKDIDVLNSA 444
Score = 400 (145.9 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 83/207 (40%), Positives = 128/207 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++V+ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 288 VCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQ 347
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI-DERHLSRLHMILKPFML 267
N++ ELWALL+F++P +F+S D+F+ WF + K + D++ + RLH +LKPF+L
Sbjct: 348 NNLHELWALLNFLLPDVFNSADDFDSWF--------DTKNCLGDQKLVERLHAVLKPFLL 399
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIAS 327
RRIK DVE L K EI +Y L+ Q+ Y+ KI ++D+ +S G +
Sbjct: 400 RRIKTDVEKSLPPKKEIKIYLGLSKMQREWYT----KILMKDIDVLNSAGKMD-----KM 450
Query: 328 NLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 451 RLLNILMQLRKCCNHPYLFDGAEPGPP 477
Score = 163 (62.4 bits), Expect = 4.8e-69, Sum P(2) = 4.8e-69
Identities = 32/71 (45%), Positives = 50/71 (70%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
+V ++GK+ VLD LL +LK G RVL++SQMT+++D+LE++ ++R Y + RLDG + E
Sbjct: 484 IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 543
Query: 554 RRDM---FAVP 561
R + F VP
Sbjct: 544 REEAIEAFNVP 554
Score = 80 (33.2 bits), Expect = 2.6e-60, Sum P(2) = 2.6e-60
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 418 KIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYV 477
KI ++D+ +S G + L+N++MQ RK CNHP LF+ + P + ++++
Sbjct: 432 KILMKDIDVLNSAGKMD-----KMRLLNILMQLRKCCNHPYLFDGAEPGPPY--TTDEHI 484
Query: 478 IP---KLVFEEALL 488
+ K+V + LL
Sbjct: 485 VSNSGKMVVLDKLL 498
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 564 (203.6 bits), Expect = 6.3e-69, Sum P(3) = 6.3e-69
Identities = 126/321 (39%), Positives = 198/321 (61%)
Query: 33 QPGLFRGNL--KHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVW 90
QP + +L K YQ G+NWLA ++ G+NGILADEMGLGKT+Q+IAFL ++ + +
Sbjct: 487 QPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNN- 545
Query: 91 GPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVV 150
GP LI+ PAST+ NW +E+ + P KV+ Y+GS +ERK +R F N+H++ ++V+
Sbjct: 546 GPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIR-F----NIHSRYEDYNVI 600
Query: 151 ITSYQLVVS---DFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
+T+Y +S D F R+K Y I DE +K+ S+R++ L+ + NRLLL+GTP+
Sbjct: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660
Query: 208 QNSMAELWALLHFIMPSMFDSH-DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFM 266
QN++ EL +LL+F+MP MF S E FS +S A+ ++ ++ ++ I+KPF+
Sbjct: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKS-ADEQSIYEKERIAHAKQIIKPFI 719
Query: 267 LRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIA 326
LRR+K++V +L K + + C ++ +Q+ LY L ++K SI NN+
Sbjct: 720 LRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLK----------KSI---NNLE 766
Query: 327 SN--LMNLVMQFRKVCNHPEL 345
N + N++MQ RK+ NHP L
Sbjct: 767 KNTEMCNVMMQLRKMANHPLL 787
Score = 152 (58.6 bits), Expect = 6.3e-69, Sum P(3) = 6.3e-69
Identities = 28/63 (44%), Positives = 45/63 (71%)
Query: 492 LTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKI 551
+ L+ D+GK VL +L LK G RV+++SQ T M+D+LE + + ++R++RLDG ++I
Sbjct: 847 MDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 906
Query: 552 SER 554
SER
Sbjct: 907 SER 909
Score = 71 (30.1 bits), Expect = 7.6e-09, Sum P(3) = 7.6e-09
Identities = 47/209 (22%), Positives = 92/209 (44%)
Query: 268 RRIKKDVENELSD-KIEIMVY-CPLTSRQ-KLLYSALKKKIKIEDLIHSSSG-GSIQLSN 323
++I+ ++ + D + + Y C ++S + L+ LK I D H GSI+ +
Sbjct: 584 KQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQH 643
Query: 324 NIASNLMN-LVMQFRKVCNHP-ELFERRDAKAP--LAMSCEDYHRLYRGRQMEREEGTIL 379
+ N N L++ V N+ EL + P + S + R++ + +E +I
Sbjct: 644 LMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIY 703
Query: 380 PEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKI------EDLIHSSSGGSI 433
E + I+ +P L E + + P K +I++ ++ ++ +
Sbjct: 704 -EKERIAHAKQII--KPFILRRVKEEVLKQL--PPKKDRIELCAMSEKQEQLYLGLFNRL 758
Query: 434 QLS-NNIASN--LMNLVMQFRKVCNHPEL 459
+ S NN+ N + N++MQ RK+ NHP L
Sbjct: 759 KKSINNLEKNTEMCNVMMQLRKMANHPLL 787
Score = 39 (18.8 bits), Expect = 6.3e-69, Sum P(3) = 6.3e-69
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 2 DNVRHAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGN 40
+ + A E Q SQ S+ S S E E + + R N
Sbjct: 15 NKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRAN 53
Score = 39 (18.8 bits), Expect = 4.2e-57, Sum P(3) = 4.2e-57
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEF 534
L +L+ LLK + R+ +Q+++ I L++EF
Sbjct: 883 LDILEVLLKHHQHRYLRLDGKTQISERIHLIDEF 916
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 574 (207.1 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 117/296 (39%), Positives = 181/296 (61%)
Query: 9 EVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEM 68
E E+ ++ G S T + QP +G L+ YQL G+NWL LY+ GINGILADEM
Sbjct: 163 EDEECLKEEEGGIVGSGGTRL-LTQPACIQGKLRDYQLAGLNWLIRLYENGINGILADEM 221
Query: 69 GLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQER 128
GLGKT+Q+I+ L ++ E + GP ++++P STL NW E+ RF P + V + G+P+ER
Sbjct: 222 GLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEER 281
Query: 129 KILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRW 188
+ +R+ L F + +TS+++ + + R W+Y+I+DEA IK+ +S+
Sbjct: 282 RHIRE-----ELLVA-GKFDICVTSFEMAIKEKTTLRRFSWRYIIIDEAHRIKNENSLLS 335
Query: 189 KLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKT 248
K + FS RLL++GTP+QN++ ELWALL+F++P +F S + F+EWF + EN
Sbjct: 336 KTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWF----QISGEND- 390
Query: 249 SIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK 304
+ + +LH +L+PF+LRR+K DVE L K E ++ ++ QK Y AL +K
Sbjct: 391 --QQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQK 444
Score = 159 (61.0 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 29/61 (47%), Positives = 48/61 (78%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV +AGK+ +LD LL +LK RVL++SQMT+++D+LE++++YR Y++ R+DG++ E
Sbjct: 490 LVTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDE 549
Query: 554 R 554
R
Sbjct: 550 R 550
Score = 158 (60.7 bits), Expect = 4.7e-19, Sum P(2) = 4.7e-19
Identities = 42/121 (34%), Positives = 61/121 (50%)
Query: 234 EWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSR 293
E F + + EN + + +LH +L+PF+LRR+K DVE L K E ++ ++
Sbjct: 377 ETFDEWFQISGEND---QQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQM 433
Query: 294 QKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKA 353
QK Y AL +K DL + GG L+N+ MQ RK CNHP LF+ +
Sbjct: 434 QKQYYKALLQK----DLEVVNGGGE-------RKRLLNIAMQLRKCCNHPYLFQGAEPGP 482
Query: 354 P 354
P
Sbjct: 483 P 483
Score = 77 (32.2 bits), Expect = 4.6e-60, Sum P(2) = 4.6e-60
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 443 LMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIP---KLVFEEALL 488
L+N+ MQ RK CNHP LF+ + P D+++ K+V + LL
Sbjct: 458 LLNIAMQLRKCCNHPYLFQGAEPGPPYTTG--DHLVTNAGKMVLLDKLL 504
Score = 42 (19.8 bits), Expect = 2.2e-56, Sum P(2) = 2.2e-56
Identities = 23/103 (22%), Positives = 43/103 (41%)
Query: 388 DPVILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDL--IHSSSGGSIQLSNNIASNLMN 445
DP ++ Y V +F+ T +PA K+ +I + +H +IQ + +
Sbjct: 745 DPPKRERKRNYSEVEYFKQTLRQGAPAKPKEPRIPRMPQLHDFQFFNIQRLTELYEKEVR 804
Query: 446 LVMQFRKVCNHP---ELFERRDAKAPLAMSCEDYVIPKLVFEE 485
+MQ + E+ E + PL + E+ +L+ EE
Sbjct: 805 YLMQAHQKTQMKDTIEVDEPEEVGDPL--TAEEVEEKELLLEE 845
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 555 (200.4 bits), Expect = 1.3e-68, Sum P(2) = 1.3e-68
Identities = 122/316 (38%), Positives = 194/316 (61%)
Query: 10 VEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMG 69
VE+QR++ G S E+P+ L G L+ YQL+G+N+L N + N ILADEMG
Sbjct: 599 VEQQRTK--GKA--SLRKLDEQPE-WLIGGTLRDYQLEGLNFLVNSWLNDTNVILADEMG 653
Query: 70 LGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERK 129
LGKTVQS++ L + T + GPFL++ P STL NW +E +++P ++ Y G+ R+
Sbjct: 654 LGKTVQSVSMLGFLQNTQQIPGPFLVVVPLSTLANWAKEFRKWLPGMNIIVYVGTRASRE 713
Query: 130 ILRQ--FWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMR 187
+ +Q F++ K + + F+ ++T+Y++V+ D ++IKW YL++DEA +K+S +
Sbjct: 714 VCQQYEFYNEKKVG-RPIKFNALLTTYEVVLKDKAVLSKIKWIYLMVDEAHRLKNSEAQL 772
Query: 188 WKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENK 247
+ LL FS +N+LL++GTP+QNS+ ELWALLHF+ P F + DEF +E++ +N
Sbjct: 773 YTALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPGKFKNKDEF-------VENY-KNL 824
Query: 248 TSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKI 307
+S +E L+ LH+ L+P +LRR+ KDVE L KIE ++ ++ QK Y + ++
Sbjct: 825 SSFNESELANLHLELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILER-NF 883
Query: 308 EDLIHSSSGGSIQLSN 323
DL G + L N
Sbjct: 884 HDLNKGVRGNQVSLLN 899
Score = 339 (124.4 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 101/332 (30%), Positives = 172/332 (51%)
Query: 33 QPG-LFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWG 91
QP L G L+ YQL+G+N+L N + N ILADEMGLGKTVQS++ L + T + G
Sbjct: 616 QPEWLIGGTLRDYQLEGLNFLVNSWLNDTNVILADEMGLGKTVQSVSMLGFLQNTQQIPG 675
Query: 92 PFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVI 151
PFL++ P STL NW +E +++P ++ Y G+ R++ +Q+ F+
Sbjct: 676 PFLVVVPLSTLANWAKEFRKWLPGMNIIVYVGTRASREVCQQY-----------EFY--- 721
Query: 152 TSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSM 211
+ + V K FN + Y ++ + +A+ S ++W L+ +RL S + ++
Sbjct: 722 -NEKKVGRPIK-FNALLTTYEVVLKDKAVLSK--IKWIYLMVDEA-HRLKNSEAQLYTAL 776
Query: 212 AELWALLHFIMPS--MFDSHDEF---------NEWFSKD--IESHAENKTSIDERHLSRL 258
E ++ + +S +E ++ +KD +E++ +N +S +E L+ L
Sbjct: 777 LEFSTKNKLLITGTPLQNSVEELWALLHFLDPGKFKNKDEFVENY-KNLSSFNESELANL 835
Query: 259 HMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGS 318
H+ L+P +LRR+ KDVE L KIE ++ ++ QK Y + ++ DL G
Sbjct: 836 HLELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILER-NFHDLNKGVRGNQ 894
Query: 319 IQLSNNIASNLMNLVMQFRKVCNHPELFERRD 350
+ +L+N+V++ +K CNHP LFE D
Sbjct: 895 V--------SLLNIVVELKKCCNHPFLFESAD 918
Score = 187 (70.9 bits), Expect = 1.3e-68, Sum P(2) = 1.3e-68
Identities = 45/123 (36%), Positives = 73/123 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N+V++ +K CNHP LFE D ++ ++ + K++ +GKL
Sbjct: 896 SLLNIVVELKKCCNHPFLFESADHGYGGDIN-DNSKLDKIILS-------------SGKL 941
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+LD LL RL+ + HRVL++SQM +M+D+L E++ R ++F RLDGS+K R+ D F
Sbjct: 942 VILDKLLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHF 1001
Query: 559 AVP 561
P
Sbjct: 1002 NAP 1004
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 565 (203.9 bits), Expect = 1.6e-68, Sum P(3) = 1.6e-68
Identities = 128/321 (39%), Positives = 196/321 (61%)
Query: 33 QPGLFRGNL--KHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVW 90
QP L +L K YQ G+NWLA ++ G+NGILADEMGLGKT+Q+IAFL ++ + +
Sbjct: 485 QPSLLNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQEGNK- 543
Query: 91 GPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVV 150
GP LI+ PAST+ NW +E+ + P V+ Y+GS +ERK +R F N+H K ++V+
Sbjct: 544 GPHLIVVPASTIDNWLREVNLWCPTLNVLCYYGSQEERKQIR-F----NIHNKYEDYNVI 598
Query: 151 ITSYQLVVS---DFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
+T+Y +S D F R+K Y I DE +K+ S+R++ L+ + RNRLLL+GTP+
Sbjct: 599 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPV 658
Query: 208 QNSMAELWALLHFIMPSMFDSH-DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFM 266
QN++ EL +LL+F+MP MF S E FS + A+ ++ ++ ++ I+KPF+
Sbjct: 659 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKP-ADEQSIYEKERIAHAKQIIKPFI 717
Query: 267 LRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIA 326
LRR+K++V L K + + C ++ +Q+ LYS L ++K SI NN+
Sbjct: 718 LRRVKEEVLKLLPPKKDQIELCAMSEKQEQLYSGLFNRLK----------KSI---NNLE 764
Query: 327 SN--LMNLVMQFRKVCNHPEL 345
N + N++MQ RK+ NHP L
Sbjct: 765 KNTEMCNVMMQLRKMANHPLL 785
Score = 148 (57.2 bits), Expect = 1.6e-68, Sum P(3) = 1.6e-68
Identities = 27/63 (42%), Positives = 44/63 (69%)
Query: 492 LTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKI 551
+ L+ D+GK L +L LK G RV+++SQ T M+D+LE + + ++R++RLDG ++I
Sbjct: 845 MDLILDSGKFRTLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 904
Query: 552 SER 554
SER
Sbjct: 905 SER 907
Score = 83 (34.3 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 47/207 (22%), Positives = 91/207 (43%)
Query: 268 RRIKKDVENELSD-KIEIMVY-CPLTSRQ-KLLYSALKKKIKIEDLIHSSSG-GSIQLSN 323
++I+ ++ N+ D + + Y C ++S + L+ LK I D H GSI+ +
Sbjct: 582 KQIRFNIHNKYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQH 641
Query: 324 NIASNLMN-LVMQFRKVCNHP-ELFERRDAKAP--LAMSCEDYHRLYRGRQMEREEGTIL 379
+ N N L++ V N+ EL + P + S + R++ + +E +I
Sbjct: 642 LMTINARNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIY 701
Query: 380 PE--FPHVPR--DPVILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQL 435
+ H + P IL + + + A+ +K ++ ++S ++
Sbjct: 702 EKERIAHAKQIIKPFILRRVKEEVLKLLPPKKDQIELCAMSEK---QEQLYSGLFNRLKK 758
Query: 436 S-NNIASN--LMNLVMQFRKVCNHPEL 459
S NN+ N + N++MQ RK+ NHP L
Sbjct: 759 SINNLEKNTEMCNVMMQLRKMANHPLL 785
Score = 39 (18.8 bits), Expect = 4.1e-57, Sum P(3) = 4.1e-57
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEF 534
L +L+ LLK + R+ +Q+++ I L++EF
Sbjct: 881 LDILEVLLKHHQHRYLRLDGKTQISERIHLIDEF 914
Score = 38 (18.4 bits), Expect = 1.6e-68, Sum P(3) = 1.6e-68
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 4 VRHAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGN 40
+ A E Q SQ S+ S S E E + + R N
Sbjct: 17 IEEAPEAAPQPSQPGPSSPISLSAEEENAEGEVSRAN 53
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 566 (204.3 bits), Expect = 3.7e-68, Sum P(2) = 3.7e-68
Identities = 130/343 (37%), Positives = 200/343 (58%)
Query: 9 EVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNL--KHYQLKGMNWLANLYDQGINGILAD 66
E+ + ++Q T QP + NL K YQ G+NWLA L+ +N ILAD
Sbjct: 440 EISRTLTKQVTQLTEDGECGWNIEQPSIMSENLVLKPYQKIGLNWLALLHKHKVNMILAD 499
Query: 67 EMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQ 126
EMGLGKTVQ+IAFL H+ T D GP L++ PAST+ NW +E ++ P ++ Y+GS +
Sbjct: 500 EMGLGKTVQAIAFLAHLYVTGDS-GPHLVVVPASTMDNWIREFNQWCPSMNILLYYGSQE 558
Query: 127 ERKILRQFWDMKNLHTKDASFHVVITSYQLVVS---DFKYFNRIKWQYLILDEAQAIKSS 183
ERK LR +D+ N K F+V++T+Y +S D F R+K + + DE +K+
Sbjct: 559 ERKHLR--YDILN---KVVEFNVIVTTYNCAISSAEDRSLFRRLKLNFAVFDEGHMLKNM 613
Query: 184 SSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSH-DEFNEWFSKDIES 242
S++R++ L+ + R+RLLL+GTP+QN++ EL +LL+F+MP MF S E FS +S
Sbjct: 614 SAIRYQHLMTLNARSRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIKRLFSSKAKS 673
Query: 243 HAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALK 302
+ +T ++ ++ I+KPF+LRR+K +V +L K + + +C ++ +Q+ LYS L
Sbjct: 674 -TDEQTIFEKERIAHAKQIMKPFILRRVKSEVLKQLPPKQDKIKFCQMSKKQEQLYSDLL 732
Query: 303 KKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPEL 345
K+K SI + S L N++M RK+ NHP L
Sbjct: 733 NKLK----------KSIDATEK-NSELCNVMMHLRKMANHPLL 764
Score = 160 (61.4 bits), Expect = 3.7e-68, Sum P(2) = 3.7e-68
Identities = 33/83 (39%), Positives = 57/83 (68%)
Query: 475 DYVIPKLVFEEALLC-HKLT--LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLL 531
D+ + +L E L +KL L+ D+GK ++L+ LL +K G RV+++SQ T M+D++
Sbjct: 804 DFELHRLCNEFTTLSQYKLEKELILDSGKFNILEKLLSDIKKKGDRVVLFSQFTMMLDII 863
Query: 532 EEFMVYRKYRFMRLDGSSKISER 554
E F+ + ++R++RLDG ++ISER
Sbjct: 864 EVFLRHHQHRYVRLDGKTQISER 886
Score = 63 (27.2 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 45/207 (21%), Positives = 89/207 (42%)
Query: 268 RRIKKDVENELSD-KIEIMVY-CPLTSRQ-KLLYSALKKKIKIEDLIHSSSGGS-IQLSN 323
+ ++ D+ N++ + + + Y C ++S + + L+ LK + D H S I+ +
Sbjct: 561 KHLRYDILNKVVEFNVIVTTYNCAISSAEDRSLFRRLKLNFAVFDEGHMLKNMSAIRYQH 620
Query: 324 NIASNLMN-LVMQFRKVCNHP-ELFERRDAKAP--LAMSCEDYHRLYRGRQMEREEGTIL 379
+ N + L++ V N+ EL + P + S + RL+ + +E TI
Sbjct: 621 LMTLNARSRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIKRLFSSKAKSTDEQTIF 680
Query: 380 PE--FPHVPR--DPVILPQQPTYLPVCFFESTQNMVS--PALKKKIKI-EDLIHSSSGGS 432
+ H + P IL + + + + Q+ + KK+ ++ DL++
Sbjct: 681 EKERIAHAKQIMKPFILRRVKSEV-LKQLPPKQDKIKFCQMSKKQEQLYSDLLNKLKKSI 739
Query: 433 IQLSNNIASNLMNLVMQFRKVCNHPEL 459
N S L N++M RK+ NHP L
Sbjct: 740 DATEKN--SELCNVMMHLRKMANHPLL 764
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 567 (204.7 bits), Expect = 3.8e-68, Sum P(2) = 3.8e-68
Identities = 124/309 (40%), Positives = 201/309 (65%)
Query: 41 LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS 100
LK YQL G+NWL L+ ++GILADEMGLGKT+Q+I+FL H+ + + GP LI PAS
Sbjct: 429 LKPYQLIGLNWLVLLHQNKLSGILADEMGLGKTIQAISFLAHLYQEGN-HGPHLITVPAS 487
Query: 101 TLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVV-- 158
TL NW +E+ + P FKV+ Y+GS +RK +R +++ N + +++++++Y L +
Sbjct: 488 TLDNWVRELNLWCPSFKVLVYYGSADDRKYMR--YEILN---QIVEYNIIVSTYNLAIGN 542
Query: 159 -SDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWAL 217
SD F ++K +Y + DE +K+ +S+R++ L+ + + RLLL+GTP+QN++ EL +L
Sbjct: 543 SSDRSLFCKLKLEYAVFDEGHLLKNMNSLRYRHLMAINAKYRLLLTGTPLQNNLLELMSL 602
Query: 218 LHFIMPSMFDSH-DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVEN 276
L+FIMP+MF S + + FS ++S +E ++S + ++ +I+KPF+LRR+K +V
Sbjct: 603 LNFIMPNMFSSSTSQIAKMFS--MKS-SEEQSSFERDRITHAKLIMKPFILRRVKSEVLK 659
Query: 277 ELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQF 336
+L K E + +C ++ RQ+ LYSAL K+K HSS+G +L+N ++MQ
Sbjct: 660 QLPAKEEQVEFCAMSERQQELYSALLHKLK-----HSSNGEKRELTN--------VMMQL 706
Query: 337 RKVCNHPEL 345
RK+ NHP L
Sbjct: 707 RKMSNHPLL 715
Score = 157 (60.3 bits), Expect = 3.8e-68, Sum P(2) = 3.8e-68
Identities = 30/61 (49%), Positives = 46/61 (75%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
++ D+GKLS+L LL LK G RV+++SQ T M+D+LE F+ + K+R+ RLDGS+ +S+
Sbjct: 777 VLLDSGKLSLLTQLLNSLKEKGDRVVLFSQFTMMLDILEVFLRHHKHRYNRLDGSTPMSD 836
Query: 554 R 554
R
Sbjct: 837 R 837
Score = 66 (28.3 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP + + C Q + AL K+K HSS+G +L+N ++MQ R
Sbjct: 661 LPAKEEQVEFCAMSERQQELYSALLHKLK-----HSSNGEKRELTN--------VMMQLR 707
Query: 452 KVCNHPEL 459
K+ NHP L
Sbjct: 708 KMSNHPLL 715
>ZFIN|ZDB-GENE-050522-499 [details] [associations]
symbol:smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-499 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000729 HOGENOM:HOG000172362
GO:GO:0035861 GeneTree:ENSGT00630000089890 OMA:KEERYMA
HOVERGEN:HBG055804 EMBL:AL807792 IPI:IPI00492619 UniGene:Dr.3950
ProteinModelPortal:B0R061 Ensembl:ENSDART00000091409
ArrayExpress:B0R061 Bgee:B0R061 Uniprot:B0R061
Length = 972
Score = 557 (201.1 bits), Expect = 4.0e-68, Sum P(3) = 4.0e-68
Identities = 124/319 (38%), Positives = 194/319 (60%)
Query: 33 QPGLFRGNLK--HYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVW 90
QP + NLK YQL G+ WL L+ ++GILADEMGLGKT+Q+IAFL H+ E +
Sbjct: 438 QPKVLNSNLKLQAYQLIGLKWLILLHQHKLSGILADEMGLGKTIQAIAFLAHLYEK-GIK 496
Query: 91 GPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVV 150
GP LI P+STL NW +E+ + P KV+ Y+GS ++RK LRQ ++ T F+++
Sbjct: 497 GPHLITVPSSTLDNWVRELGLWCPSLKVLIYYGSVEDRKYLRQ-----DILTGLIDFNII 551
Query: 151 ITSYQLVVS---DFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
+++Y L + D F ++K +Y + DE +K+ +S+R++ L+ + +RLLL+GTP+
Sbjct: 552 VSTYNLTIGNDHDRSLFRKLKLKYAVFDEGHMLKNMNSLRYRHLMTINAEHRLLLTGTPL 611
Query: 208 QNSMAELWALLHFIMPSMFDSH-DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFM 266
QN++ EL +LL+FIMPSMF S + ++ FS +E ++S + +++ +I+KPF+
Sbjct: 612 QNNLLELMSLLNFIMPSMFSSSTSQISKMFST---RSSEEESSFHKDRIAQARLIMKPFI 668
Query: 267 LRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIA 326
LRR+K +V EL K+E + CP++ Q LY L K++K + N
Sbjct: 669 LRRVKSEVLKELPPKMEKIEMCPMSDAQHKLYDILFKRLK-------------KTPNGDK 715
Query: 327 SNLMNLVMQFRKVCNHPEL 345
L N++MQ RK+ NHP L
Sbjct: 716 RELCNVMMQLRKMANHPLL 734
Score = 133 (51.9 bits), Expect = 4.0e-68, Sum P(3) = 4.0e-68
Identities = 24/61 (39%), Positives = 44/61 (72%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
L+ D+GK ++L L +LK G RV+++SQ T M+D++E + + ++++RLDGS+ ++E
Sbjct: 796 LILDSGKFALLTKTLAKLKEKGDRVVLFSQFTMMLDIVEILLKHLDHQYVRLDGSTPMAE 855
Query: 554 R 554
R
Sbjct: 856 R 856
Score = 55 (24.4 bits), Expect = 4.0e-68, Sum P(3) = 4.0e-68
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 437 NNIASNLMNLVMQFRKVCNHPEL 459
N L N++MQ RK+ NHP L
Sbjct: 712 NGDKRELCNVMMQLRKMANHPLL 734
Score = 39 (18.8 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 15/76 (19%), Positives = 36/76 (47%)
Query: 222 MPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDK 281
MP S E + D++S ++++ S DE +S + +I + +++ D+
Sbjct: 300 MPLNDVSASEDEDEIDSDVDSMSDDQDSEDEDSISGT-------LQDKIIQFLQDASLDE 352
Query: 282 IEIMVYCPLTSRQKLL 297
+ ++ C + QK++
Sbjct: 353 LALISGCSIKKAQKII 368
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 517 (187.1 bits), Expect = 4.2e-68, Sum P(2) = 4.2e-68
Identities = 125/330 (37%), Positives = 187/330 (56%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L YQL+G+NWL + QG + ILADEMGLGKTVQ+I FL + + GP+L+ +P
Sbjct: 81 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 140
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWD------MKNLHTK---DA 145
ST+ NW++E E + PDF VV Y G + R ++R+ F D K K
Sbjct: 141 LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQI 200
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
FHV++TSY+L+ D I+W L++DEA +K++ S +++L + +LLL+GT
Sbjct: 201 KFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGT 260
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN++ EL+ LL+F+ P F++ + F E F+ DI E + +LH +L P
Sbjct: 261 PLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISK---------EDQIKKLHDLLGPH 310
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
MLRR+K DV + K E++V L+ QK Y + + E L +S GG Q+S
Sbjct: 311 MLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR-NFEAL--NSKGGGNQVS--- 364
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAPL 355
L+N++M +K CNHP LF +AP+
Sbjct: 365 ---LLNIMMDLKKCCNHPYLFPVAAVEAPV 391
Score = 212 (79.7 bits), Expect = 4.2e-68, Sum P(2) = 4.2e-68
Identities = 49/124 (39%), Positives = 74/124 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M +K CNHP LF +AP V+P ++ + +LV +GKL
Sbjct: 364 SLLNIMMDLKKCCNHPYLFPVAAVEAP--------VLPNGSYDGS------SLVKSSGKL 409
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +LK+L+ GHRVL++SQMTKM+DLLE+F+ Y Y++ R+DG R+ D F
Sbjct: 410 MLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRF 469
Query: 559 AVPG 562
PG
Sbjct: 470 NAPG 473
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 601 (216.6 bits), Expect = 6.3e-68, Sum P(2) = 6.3e-68
Identities = 166/511 (32%), Positives = 265/511 (51%)
Query: 33 QPGLFRGN-LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWG 91
QP L G LK YQ+ G+ WL L+ G+NGILADEMGLGKT+Q I+FL H+ E + G
Sbjct: 166 QPKLITGGQLKDYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCISFLSHLIEN-GING 224
Query: 92 PFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVI 151
PFL++ P STL NW E+ +F P KV Y G+ QER D+ L ++ + ++++
Sbjct: 225 PFLVVVPVSTLSNWYNEIRKFAPKIKVTKYIGTKQERN------DIDLLQQQETT-NIIL 277
Query: 152 TSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSM 211
TSY++ + DF +I W+YLI+DE +K+S + K+L + NRLLL+GTP+QN++
Sbjct: 278 TSYEISIRDFNKLVKINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNL 337
Query: 212 AELWALLHFIMPSMFDSHDEFNEWFSKD--------IES-------HAEN--KTSIDERH 254
ELW+LL+FI+P +F + F +WF+ D +E +N K +I E
Sbjct: 338 NELWSLLNFILPDIFHDLELFQQWFNFDELTELAGELEGTNNEEDEETKNLIKLNIQETL 397
Query: 255 LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQK-LLYSALKKKIKIEDLIHS 313
+ LH ILKPFMLRR+K+DV L K E +++ P+T QK + Y A+ K+ + L+ +
Sbjct: 398 IKNLHTILKPFMLRRLKRDVIKNLPPKKEYLLHIPMTKLQKKIYYDAVNDKL-FDSLVET 456
Query: 314 SSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRG-RQME 372
+ I+ ++ N + V ++ K + F + L S D + L R ++ +
Sbjct: 457 NLKAFIKFNHEELFNGFD-VDEYLKTRRQRDSFMETGGLSKLRGSRSDRNSLKRSYKEAD 515
Query: 373 REEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGS 432
+E EF + + L + P + E+ + +K K KI+ ++ +
Sbjct: 516 SDE-----EFEIMDAEDDSLTGRGNTTP-SYDEALVKIRH--IKSKTKIQSILIDAIYQD 567
Query: 433 IQLSNNIASNLMNLVM-QFRKVCNHPELFERR---DAKAPLAMSCEDYVIPKLVFEEALL 488
I L L NL M Q R +CN P ++ D + S + V+ +L+
Sbjct: 568 I-LKEAKHLKLQNLKMIQLRNICNSPFIYYNYPILDQAEVIRNSAKFQVLNQLLPPLLSS 626
Query: 489 CHKLTLVYDAGK-LSVLDDLLKRLKASGHRV 518
HK+ + K L +L+D L+ S ++
Sbjct: 627 GHKVLIFAQFTKVLDLLEDWLEESPLSHGKI 657
Score = 110 (43.8 bits), Expect = 6.3e-68, Sum P(2) = 6.3e-68
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKY---RFMRLDGSS 549
++ ++ K VL+ LL L +SGH+VL+++Q TK++DLLE+++ + RLDGS+
Sbjct: 606 VIRNSAKFQVLNQLLPPLLSSGHKVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGST 664
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 601 (216.6 bits), Expect = 6.3e-68, Sum P(2) = 6.3e-68
Identities = 166/511 (32%), Positives = 265/511 (51%)
Query: 33 QPGLFRGN-LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWG 91
QP L G LK YQ+ G+ WL L+ G+NGILADEMGLGKT+Q I+FL H+ E + G
Sbjct: 166 QPKLITGGQLKDYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCISFLSHLIEN-GING 224
Query: 92 PFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVI 151
PFL++ P STL NW E+ +F P KV Y G+ QER D+ L ++ + ++++
Sbjct: 225 PFLVVVPVSTLSNWYNEIRKFAPKIKVTKYIGTKQERN------DIDLLQQQETT-NIIL 277
Query: 152 TSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSM 211
TSY++ + DF +I W+YLI+DE +K+S + K+L + NRLLL+GTP+QN++
Sbjct: 278 TSYEISIRDFNKLVKINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNL 337
Query: 212 AELWALLHFIMPSMFDSHDEFNEWFSKD--------IES-------HAEN--KTSIDERH 254
ELW+LL+FI+P +F + F +WF+ D +E +N K +I E
Sbjct: 338 NELWSLLNFILPDIFHDLELFQQWFNFDELTELAGELEGTNNEEDEETKNLIKLNIQETL 397
Query: 255 LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQK-LLYSALKKKIKIEDLIHS 313
+ LH ILKPFMLRR+K+DV L K E +++ P+T QK + Y A+ K+ + L+ +
Sbjct: 398 IKNLHTILKPFMLRRLKRDVIKNLPPKKEYLLHIPMTKLQKKIYYDAVNDKL-FDSLVET 456
Query: 314 SSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRG-RQME 372
+ I+ ++ N + V ++ K + F + L S D + L R ++ +
Sbjct: 457 NLKAFIKFNHEELFNGFD-VDEYLKTRRQRDSFMETGGLSKLRGSRSDRNSLKRSYKEAD 515
Query: 373 REEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGS 432
+E EF + + L + P + E+ + +K K KI+ ++ +
Sbjct: 516 SDE-----EFEIMDAEDDSLTGRGNTTP-SYDEALVKIRH--IKSKTKIQSILIDAIYQD 567
Query: 433 IQLSNNIASNLMNLVM-QFRKVCNHPELFERR---DAKAPLAMSCEDYVIPKLVFEEALL 488
I L L NL M Q R +CN P ++ D + S + V+ +L+
Sbjct: 568 I-LKEAKHLKLQNLKMIQLRNICNSPFIYYNYPILDQAEVIRNSAKFQVLNQLLPPLLSS 626
Query: 489 CHKLTLVYDAGK-LSVLDDLLKRLKASGHRV 518
HK+ + K L +L+D L+ S ++
Sbjct: 627 GHKVLIFAQFTKVLDLLEDWLEESPLSHGKI 657
Score = 110 (43.8 bits), Expect = 6.3e-68, Sum P(2) = 6.3e-68
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKY---RFMRLDGSS 549
++ ++ K VL+ LL L +SGH+VL+++Q TK++DLLE+++ + RLDGS+
Sbjct: 606 VIRNSAKFQVLNQLLPPLLSSGHKVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGST 664
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 564 (203.6 bits), Expect = 6.4e-68, Sum P(2) = 6.4e-68
Identities = 122/320 (38%), Positives = 193/320 (60%)
Query: 5 RHAVEVEKQRSQQFGSTTPSFSTEVERPQ--PGLFRGN-LKHYQLKGMNWLANLYDQGIN 61
RH E++ ++ S + S R + P +G L+ YQ++G+NWL +LY+ G+N
Sbjct: 157 RHR-RTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVN 215
Query: 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121
GILADEMGLGKT+Q+IA L ++ ++ GP +++ P STL+NW E +R+VP +V+ +
Sbjct: 216 GILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRVICF 275
Query: 122 WGSPQERK-ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 180
G R +R +M + V +TSY++V+ + F + W+YL++DEA I
Sbjct: 276 VGDKDARAAFIRD--EMM-----PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRI 328
Query: 181 KSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI 240
K+ S +++ F NRLLL+GTP+QN++ ELWALL+F++P +F+S D+F+ WF
Sbjct: 329 KNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWF---- 384
Query: 241 ESHAENKTSI-DERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYS 299
+ K + D++ + RLH +LKPF+LRRIK DVE L K EI VY L+ Q+ +
Sbjct: 385 ----DTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKVYLGLSKMQREWWY 440
Query: 300 ALKKKIKIEDLIHSSSGGSI 319
KI ++D+ +S G +
Sbjct: 441 T---KILMKDIDVLNSAGKM 457
Score = 395 (144.1 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 83/207 (40%), Positives = 127/207 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++V+ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 297 VCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQ 356
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI-DERHLSRLHMILKPFML 267
N++ ELWALL+F++P +F+S D+F+ WF + K + D++ + RLH +LKPF+L
Sbjct: 357 NNLHELWALLNFLLPDVFNSADDFDSWF--------DTKNCLGDQKLVERLHAVLKPFLL 408
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIAS 327
RRIK DVE L K EI VY L+ Q+ + KI ++D+ +S G +
Sbjct: 409 RRIKTDVEKSLPPKKEIKVYLGLSKMQREWWYT---KILMKDIDVLNSAGKMD-----KM 460
Query: 328 NLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 461 RLLNILMQLRKCCNHPYLFDGAEPGPP 487
Score = 162 (62.1 bits), Expect = 6.4e-68, Sum P(2) = 6.4e-68
Identities = 30/67 (44%), Positives = 48/67 (71%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
+V ++GK+ VLD LL +LK G RVL++SQMT+++D+LE++ ++R Y + RLDG + E
Sbjct: 494 IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 553
Query: 554 RRDMFAV 560
R A+
Sbjct: 554 REKKEAI 560
Score = 80 (33.2 bits), Expect = 2.8e-59, Sum P(2) = 2.8e-59
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 418 KIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYV 477
KI ++D+ +S G + L+N++MQ RK CNHP LF+ + P + ++++
Sbjct: 442 KILMKDIDVLNSAGKMD-----KMRLLNILMQLRKCCNHPYLFDGAEPGPPY--TTDEHI 494
Query: 478 IP---KLVFEEALL 488
+ K+V + LL
Sbjct: 495 VSNSGKMVVLDKLL 508
>UNIPROTKB|J9NRN3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 EMBL:AAEX03003895
EMBL:AAEX03003896 EMBL:AAEX03003897 Ensembl:ENSCAFT00000044104
Uniprot:J9NRN3
Length = 1195
Score = 517 (187.1 bits), Expect = 7.9e-68, Sum P(2) = 7.9e-68
Identities = 125/330 (37%), Positives = 187/330 (56%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L YQL+G+NWL + QG + ILADEMGLGKTVQ+I FL + + GP+L+ +P
Sbjct: 672 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 731
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWD------MKNLHTK---DA 145
ST+ NW++E E + PDF VV Y G + R ++R+ F D K K
Sbjct: 732 LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQI 791
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
FHV++TSY+L+ D I+W L++DEA +K++ S +++L + +LLL+GT
Sbjct: 792 KFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGT 851
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN++ EL+ LL+F+ P F++ + F E F+ DI E + +LH +L P
Sbjct: 852 PLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISK---------EDQIKKLHDLLGPH 901
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
MLRR+K DV + K E++V L+ QK Y + + E L +S GG Q+S
Sbjct: 902 MLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR-NFEAL--NSKGGGNQVS--- 955
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAPL 355
L+N++M +K CNHP LF +AP+
Sbjct: 956 ---LLNIMMDLKKCCNHPYLFPVAAVEAPV 982
Score = 212 (79.7 bits), Expect = 7.9e-68, Sum P(2) = 7.9e-68
Identities = 49/124 (39%), Positives = 74/124 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M +K CNHP LF +AP V+P ++ + +LV +GKL
Sbjct: 955 SLLNIMMDLKKCCNHPYLFPVAAVEAP--------VLPNGSYDGS------SLVKSSGKL 1000
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +LK+L+ GHRVL++SQMTKM+DLLE+F+ Y Y++ R+DG R+ D F
Sbjct: 1001 MLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRF 1060
Query: 559 AVPG 562
PG
Sbjct: 1061 NAPG 1064
Score = 42 (19.8 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 391 ILPQQPTYLPVCFFES-TQNMVSPALKKKIK 420
+ PQQP PV ++ T+ P ++KKIK
Sbjct: 202 VSPQQPPQ-PVPIRKAKTKEGKGPGVRKKIK 231
>UNIPROTKB|F2Z2R5 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 EMBL:AL035406 HGNC:HGNC:16816
ChiTaRS:CHD5 IPI:IPI00444866 ProteinModelPortal:F2Z2R5 SMR:F2Z2R5
Ensembl:ENST00000496404 ArrayExpress:F2Z2R5 Bgee:F2Z2R5
Uniprot:F2Z2R5
Length = 1225
Score = 517 (187.1 bits), Expect = 8.9e-68, Sum P(2) = 8.9e-68
Identities = 125/330 (37%), Positives = 187/330 (56%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L YQL+G+NWL + QG + ILADEMGLGKTVQ+I FL + + GP+L+ +P
Sbjct: 698 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 757
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWD------MKNLHTK---DA 145
ST+ NW++E E + PDF VV Y G + R ++R+ F D K K
Sbjct: 758 LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQI 817
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
FHV++TSY+L+ D I+W L++DEA +K++ S +++L + +LLL+GT
Sbjct: 818 KFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGT 877
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN++ EL+ LL+F+ P F++ + F E F+ DI E + +LH +L P
Sbjct: 878 PLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISK---------EDQIKKLHDLLGPH 927
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
MLRR+K DV + K E++V L+ QK Y + + E L +S GG Q+S
Sbjct: 928 MLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR-NFEAL--NSKGGGNQVS--- 981
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAPL 355
L+N++M +K CNHP LF +AP+
Sbjct: 982 ---LLNIMMDLKKCCNHPYLFPVAAVEAPV 1008
Score = 212 (79.7 bits), Expect = 8.9e-68, Sum P(2) = 8.9e-68
Identities = 49/124 (39%), Positives = 74/124 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M +K CNHP LF +AP V+P ++ + +LV +GKL
Sbjct: 981 SLLNIMMDLKKCCNHPYLFPVAAVEAP--------VLPNGSYDGS------SLVKSSGKL 1026
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +LK+L+ GHRVL++SQMTKM+DLLE+F+ Y Y++ R+DG R+ D F
Sbjct: 1027 MLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRF 1086
Query: 559 AVPG 562
PG
Sbjct: 1087 NAPG 1090
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 552 (199.4 bits), Expect = 1.3e-67, Sum P(2) = 1.3e-67
Identities = 117/294 (39%), Positives = 184/294 (62%)
Query: 33 QPG-LFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWG 91
QP + G L+ YQ++G+NWL + + N ILADEMGLGKT+Q+I+FL ++ D+ G
Sbjct: 746 QPSWISAGTLRDYQMEGLNWLVHSWMNNTNVILADEMGLGKTIQTISFLSYLFNEQDIKG 805
Query: 92 PFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILR--QFWDMKNLHTKDASFHV 149
PFL++ P ST+ NWQ+E ++ P V+ Y G+ Q R I+R +F+ L K +F+V
Sbjct: 806 PFLVVVPLSTIENWQREFAKWAPAMNVIVYTGTGQSRDIIRLYEFYTTNRLGKKKLNFNV 865
Query: 150 VITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQN 209
++T+Y ++ D IKW++L +DEA +K+S S+ ++L ++ NRLL++GTP+QN
Sbjct: 866 LLTTYDFILKDKNTLGTIKWEFLAVDEAHRLKNSESVLHEVLKLYNTTNRLLVTGTPLQN 925
Query: 210 SMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRR 269
S+ ELW LL+F+MP+ F S +F + +S D++ EN D+ +++LH +LKP +LRR
Sbjct: 926 SLKELWNLLNFLMPNKFTSLKDFQDQYS-DLK---EN----DQ--IAQLHSVLKPHLLRR 975
Query: 270 IKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSN 323
IKKDVE L K E ++ L++ QK Y + K ++L + G L N
Sbjct: 976 IKKDVEKSLPPKTERILRVDLSNVQKKYYKWILTK-NFQEL-NKGKGEKTTLLN 1027
Score = 182 (69.1 bits), Expect = 1.3e-67, Sum P(2) = 1.3e-67
Identities = 44/121 (36%), Positives = 73/121 (60%)
Query: 441 SNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGK 500
+ L+N++ + +K CNHP L++ +A+ + +D LL +++ +GK
Sbjct: 1023 TTLLNIMTELKKTCNHPYLYQ--NARDECELGAKD-----------LLD---SMIRASGK 1066
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGS---SKISERRDM 557
L +LD LL RLK +GHRVL++SQM +M+D+L +++ R ++F RLDGS K S+ D
Sbjct: 1067 LVLLDKLLIRLKETGHRVLIFSQMVRMLDILADYLKGRSFQFQRLDGSMSREKRSQAMDR 1126
Query: 558 F 558
F
Sbjct: 1127 F 1127
Score = 141 (54.7 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 39/120 (32%), Positives = 65/120 (54%)
Query: 233 NEWFS-KDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLT 291
N++ S KD + + D+ +++LH +LKP +LRRIKKDVE L K E ++ L+
Sbjct: 940 NKFTSLKDFQDQYSDLKENDQ--IAQLHSVLKPHLLRRIKKDVEKSLPPKTERILRVDLS 997
Query: 292 SRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFER-RD 350
+ QK Y + K ++L + G + L+N++ + +K CNHP L++ RD
Sbjct: 998 NVQKKYYKWILTK-NFQEL-NKGKGEK--------TTLLNIMTELKKTCNHPYLYQNARD 1047
Score = 45 (20.9 bits), Expect = 3.4e-53, Sum P(2) = 3.4e-53
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 295 KLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMN 331
K LY +KK + SSS S + SN+ +SN N
Sbjct: 1865 KSLYDKMKKSSSSNN--DSSSSSSSRSSNSSSSNNSN 1899
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 568 (205.0 bits), Expect = 1.9e-67, Sum P(2) = 1.9e-67
Identities = 124/319 (38%), Positives = 197/319 (61%)
Query: 33 QPGLFRGNL--KHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVW 90
QP + +L K YQ G+NWLA ++ G+NGILADEMGLGKT+Q+IAFL ++ + +
Sbjct: 487 QPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNK- 545
Query: 91 GPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVV 150
GP LI+ PAST+ NW +E+ + P KV+ Y+GS +ERK +R N+H+K ++V+
Sbjct: 546 GPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRY-----NIHSKYEEYNVI 600
Query: 151 ITSYQLVVS---DFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
+T+Y +S D F R+K Y I DE +K+ S+R++ L+ + NRLLL+GTP+
Sbjct: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660
Query: 208 QNSMAELWALLHFIMPSMFDSH-DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFM 266
QN++ EL +LL+F+MP MF S E FS +S A+ ++ ++ ++ I+KPF+
Sbjct: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKS-ADEQSIYEKERIAHAKQIIKPFI 719
Query: 267 LRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIA 326
LRR+K++V +L K + + C ++ +Q+ LY L ++K S +I+ S
Sbjct: 720 LRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLK-------KSINNIEKS---- 768
Query: 327 SNLMNLVMQFRKVCNHPEL 345
+ + N++MQ RK+ NHP L
Sbjct: 769 TEMCNVMMQLRKMANHPLL 787
Score = 152 (58.6 bits), Expect = 1.9e-67, Sum P(2) = 1.9e-67
Identities = 28/63 (44%), Positives = 45/63 (71%)
Query: 492 LTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKI 551
+ L+ D+GK VL +L LK G RV+++SQ T M+D+LE + + ++R++RLDG ++I
Sbjct: 847 MDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 906
Query: 552 SER 554
SER
Sbjct: 907 SER 909
Score = 67 (28.6 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 46/209 (22%), Positives = 94/209 (44%)
Query: 268 RRIKKDVENELSD-KIEIMVY-CPLTSRQ-KLLYSALKKKIKIEDLIHSSSG-GSIQLSN 323
++I+ ++ ++ + + + Y C ++S + L+ LK I D H GSI+ +
Sbjct: 584 KQIRYNIHSKYEEYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQH 643
Query: 324 NIASNLMN-LVMQFRKVCNHP-ELFERRDAKAP--LAMSCEDYHRLYRGRQMEREEGTIL 379
+ N N L++ V N+ EL + P + S + R++ + +E +I
Sbjct: 644 LMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIY 703
Query: 380 PEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKI------EDLIHSSSGGSI 433
E + I+ +P L E + + P K +I++ ++ ++ +
Sbjct: 704 -EKERIAHAKQII--KPFILRRVKEEVLKQL--PPKKDQIELCAMSEKQEQLYLGLFNRL 758
Query: 434 QLS-NNI--ASNLMNLVMQFRKVCNHPEL 459
+ S NNI ++ + N++MQ RK+ NHP L
Sbjct: 759 KKSINNIEKSTEMCNVMMQLRKMANHPLL 787
Score = 39 (18.8 bits), Expect = 1.5e-55, Sum P(2) = 1.5e-55
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEF 534
L +L+ LLK + R+ +Q+++ I L++EF
Sbjct: 883 LDILEVLLKHHQHRYLRLDGKTQISERIHLIDEF 916
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 568 (205.0 bits), Expect = 1.9e-67, Sum P(2) = 1.9e-67
Identities = 124/319 (38%), Positives = 197/319 (61%)
Query: 33 QPGLFRGNL--KHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVW 90
QP + +L K YQ G+NWLA ++ G+NGILADEMGLGKT+Q+IAFL ++ + +
Sbjct: 487 QPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNK- 545
Query: 91 GPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVV 150
GP LI+ PAST+ NW +E+ + P KV+ Y+GS +ERK +R N+H+K ++V+
Sbjct: 546 GPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRY-----NIHSKYEEYNVI 600
Query: 151 ITSYQLVVS---DFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
+T+Y +S D F R+K Y I DE +K+ S+R++ L+ + NRLLL+GTP+
Sbjct: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660
Query: 208 QNSMAELWALLHFIMPSMFDSH-DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFM 266
QN++ EL +LL+F+MP MF S E FS +S A+ ++ ++ ++ I+KPF+
Sbjct: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKS-ADEQSIYEKERIAHAKQIIKPFI 719
Query: 267 LRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIA 326
LRR+K++V +L K + + C ++ +Q+ LY L ++K S +I+ S
Sbjct: 720 LRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLK-------KSINNIEKS---- 768
Query: 327 SNLMNLVMQFRKVCNHPEL 345
+ + N++MQ RK+ NHP L
Sbjct: 769 TEMCNVMMQLRKMANHPLL 787
Score = 152 (58.6 bits), Expect = 1.9e-67, Sum P(2) = 1.9e-67
Identities = 28/63 (44%), Positives = 45/63 (71%)
Query: 492 LTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKI 551
+ L+ D+GK VL +L LK G RV+++SQ T M+D+LE + + ++R++RLDG ++I
Sbjct: 847 MDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 906
Query: 552 SER 554
SER
Sbjct: 907 SER 909
Score = 67 (28.6 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 46/209 (22%), Positives = 94/209 (44%)
Query: 268 RRIKKDVENELSD-KIEIMVY-CPLTSRQ-KLLYSALKKKIKIEDLIHSSSG-GSIQLSN 323
++I+ ++ ++ + + + Y C ++S + L+ LK I D H GSI+ +
Sbjct: 584 KQIRYNIHSKYEEYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQH 643
Query: 324 NIASNLMN-LVMQFRKVCNHP-ELFERRDAKAP--LAMSCEDYHRLYRGRQMEREEGTIL 379
+ N N L++ V N+ EL + P + S + R++ + +E +I
Sbjct: 644 LMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIY 703
Query: 380 PEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKI------EDLIHSSSGGSI 433
E + I+ +P L E + + P K +I++ ++ ++ +
Sbjct: 704 -EKERIAHAKQII--KPFILRRVKEEVLKQL--PPKKDQIELCAMSEKQEQLYLGLFNRL 758
Query: 434 QLS-NNI--ASNLMNLVMQFRKVCNHPEL 459
+ S NNI ++ + N++MQ RK+ NHP L
Sbjct: 759 KKSINNIEKSTEMCNVMMQLRKMANHPLL 787
Score = 39 (18.8 bits), Expect = 1.5e-55, Sum P(2) = 1.5e-55
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEF 534
L +L+ LLK + R+ +Q+++ I L++EF
Sbjct: 883 LDILEVLLKHHQHRYLRLDGKTQISERIHLIDEF 916
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 568 (205.0 bits), Expect = 1.9e-67, Sum P(2) = 1.9e-67
Identities = 124/319 (38%), Positives = 197/319 (61%)
Query: 33 QPGLFRGNL--KHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVW 90
QP + +L K YQ G+NWLA ++ G+NGILADEMGLGKT+Q+IAFL ++ + +
Sbjct: 487 QPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNK- 545
Query: 91 GPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVV 150
GP LI+ PAST+ NW +E+ + P KV+ Y+GS +ERK +R N+H+K ++V+
Sbjct: 546 GPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRY-----NIHSKYEEYNVI 600
Query: 151 ITSYQLVVS---DFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
+T+Y +S D F R+K Y I DE +K+ S+R++ L+ + NRLLL+GTP+
Sbjct: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660
Query: 208 QNSMAELWALLHFIMPSMFDSH-DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFM 266
QN++ EL +LL+F+MP MF S E FS +S A+ ++ ++ ++ I+KPF+
Sbjct: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKS-ADEQSIYEKERIAHAKQIIKPFI 719
Query: 267 LRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIA 326
LRR+K++V +L K + + C ++ +Q+ LY L ++K S +I+ S
Sbjct: 720 LRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLK-------KSINNIEKS---- 768
Query: 327 SNLMNLVMQFRKVCNHPEL 345
+ + N++MQ RK+ NHP L
Sbjct: 769 TEMCNVMMQLRKMANHPLL 787
Score = 152 (58.6 bits), Expect = 1.9e-67, Sum P(2) = 1.9e-67
Identities = 28/63 (44%), Positives = 45/63 (71%)
Query: 492 LTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKI 551
+ L+ D+GK VL +L LK G RV+++SQ T M+D+LE + + ++R++RLDG ++I
Sbjct: 847 MDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 906
Query: 552 SER 554
SER
Sbjct: 907 SER 909
Score = 67 (28.6 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 46/209 (22%), Positives = 94/209 (44%)
Query: 268 RRIKKDVENELSD-KIEIMVY-CPLTSRQ-KLLYSALKKKIKIEDLIHSSSG-GSIQLSN 323
++I+ ++ ++ + + + Y C ++S + L+ LK I D H GSI+ +
Sbjct: 584 KQIRYNIHSKYEEYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQH 643
Query: 324 NIASNLMN-LVMQFRKVCNHP-ELFERRDAKAP--LAMSCEDYHRLYRGRQMEREEGTIL 379
+ N N L++ V N+ EL + P + S + R++ + +E +I
Sbjct: 644 LMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIY 703
Query: 380 PEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKI------EDLIHSSSGGSI 433
E + I+ +P L E + + P K +I++ ++ ++ +
Sbjct: 704 -EKERIAHAKQII--KPFILRRVKEEVLKQL--PPKKDQIELCAMSEKQEQLYLGLFNRL 758
Query: 434 QLS-NNI--ASNLMNLVMQFRKVCNHPEL 459
+ S NNI ++ + N++MQ RK+ NHP L
Sbjct: 759 KKSINNIEKSTEMCNVMMQLRKMANHPLL 787
Score = 39 (18.8 bits), Expect = 1.5e-55, Sum P(2) = 1.5e-55
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEF 534
L +L+ LLK + R+ +Q+++ I L++EF
Sbjct: 883 LDILEVLLKHHQHRYLRLDGKTQISERIHLIDEF 916
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 567 (204.7 bits), Expect = 2.5e-67, Sum P(2) = 2.5e-67
Identities = 126/321 (39%), Positives = 197/321 (61%)
Query: 33 QPGLFRGNL--KHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVW 90
QP + +L K YQ G+NWLA ++ G+NGILADEMGLGKT+Q+IAFL ++ + +
Sbjct: 490 QPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNK- 548
Query: 91 GPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVV 150
GP LI+ PAST+ NW +E+ + P KV+ Y+GS +ERK +R N+H+K ++V+
Sbjct: 549 GPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRY-----NIHSKYEEYNVI 603
Query: 151 ITSYQLVVS---DFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
+T+Y +S D F R+K Y I DE +K+ S+R++ L+ + NRLLL+GTP+
Sbjct: 604 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 663
Query: 208 QNSMAELWALLHFIMPSMFDSH-DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFM 266
QN++ EL +LL+F+MP MF S E FS +S A+ ++ ++ ++ I+KPF+
Sbjct: 664 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKS-ADEQSIYEKERIAHAKQIIKPFI 722
Query: 267 LRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIA 326
LRR+K++V +L K + + C ++ +Q+ LY L ++K SI NN+
Sbjct: 723 LRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLK----------KSI---NNME 769
Query: 327 SN--LMNLVMQFRKVCNHPEL 345
N + N++MQ RK+ NHP L
Sbjct: 770 KNTEMCNVMMQLRKMANHPLL 790
Score = 152 (58.6 bits), Expect = 2.5e-67, Sum P(2) = 2.5e-67
Identities = 28/63 (44%), Positives = 45/63 (71%)
Query: 492 LTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKI 551
+ L+ D+GK VL +L LK G RV+++SQ T M+D+LE + + ++R++RLDG ++I
Sbjct: 850 MDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 909
Query: 552 SER 554
SER
Sbjct: 910 SER 912
Score = 67 (28.6 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 46/209 (22%), Positives = 93/209 (44%)
Query: 268 RRIKKDVENELSD-KIEIMVY-CPLTSRQ-KLLYSALKKKIKIEDLIHSSSG-GSIQLSN 323
++I+ ++ ++ + + + Y C ++S + L+ LK I D H GSI+ +
Sbjct: 587 KQIRYNIHSKYEEYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQH 646
Query: 324 NIASNLMN-LVMQFRKVCNHP-ELFERRDAKAP--LAMSCEDYHRLYRGRQMEREEGTIL 379
+ N N L++ V N+ EL + P + S + R++ + +E +I
Sbjct: 647 LMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIY 706
Query: 380 PEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKI------EDLIHSSSGGSI 433
E + I+ +P L E + + P K +I++ ++ ++ +
Sbjct: 707 -EKERIAHAKQII--KPFILRRVKEEVLKQL--PPKKDQIELCAMSEKQEQLYLGLFNRL 761
Query: 434 QLS-NNIASN--LMNLVMQFRKVCNHPEL 459
+ S NN+ N + N++MQ RK+ NHP L
Sbjct: 762 KKSINNMEKNTEMCNVMMQLRKMANHPLL 790
Score = 39 (18.8 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEF 534
L +L+ LLK + R+ +Q+++ I L++EF
Sbjct: 886 LDILEVLLKHHQHRYLRLDGKTQISERIHLIDEF 919
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 570 (205.7 bits), Expect = 2.9e-67, Sum P(2) = 2.9e-67
Identities = 129/323 (39%), Positives = 197/323 (60%)
Query: 31 RPQPGLFRGNL--KHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYD 88
R QP L +L K YQ G+NWLA ++ G+NGILADEMGLGKT+Q+IAFL ++ + +
Sbjct: 480 REQPSLLNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQEGN 539
Query: 89 VWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFH 148
GP LI+ PAST+ NW +E+ + P V+ Y+GS +ERK +R F N+H K ++
Sbjct: 540 K-GPHLIVVPASTIDNWLREVNLWCPSLNVLCYYGSQEERKQIR-F----NIHNKYEDYN 593
Query: 149 VVITSYQLVVS---DFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
V++T+Y +S D F R+K Y I DE +K+ S+R++ L+ + RNRLLL+GT
Sbjct: 594 VIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGT 653
Query: 206 PIQNSMAELWALLHFIMPSMFDSH-DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKP 264
P+QN++ EL +LL+F+MP MF S E FS + A+ ++ ++ ++ I+KP
Sbjct: 654 PVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKP-ADEQSIYEKERIAHAKQIIKP 712
Query: 265 FMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNN 324
F+LRR+K++V L K + + C ++ +Q+ LYS L ++K SI NN
Sbjct: 713 FILRRVKEEVLKLLPPKKDRIELCAMSEKQEQLYSGLFNRLK----------KSI---NN 759
Query: 325 IASN--LMNLVMQFRKVCNHPEL 345
+ N + N++MQ RK+ NHP L
Sbjct: 760 LEKNTEMCNVMMQLRKMANHPLL 782
Score = 148 (57.2 bits), Expect = 2.9e-67, Sum P(2) = 2.9e-67
Identities = 27/63 (42%), Positives = 44/63 (69%)
Query: 492 LTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKI 551
+ L+ D+GK L +L LK G RV+++SQ T M+D+LE + + ++R++RLDG ++I
Sbjct: 842 MDLILDSGKFRALGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 901
Query: 552 SER 554
SER
Sbjct: 902 SER 904
Score = 83 (34.3 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 47/207 (22%), Positives = 91/207 (43%)
Query: 268 RRIKKDVENELSD-KIEIMVY-CPLTSRQ-KLLYSALKKKIKIEDLIHSSSG-GSIQLSN 323
++I+ ++ N+ D + + Y C ++S + L+ LK I D H GSI+ +
Sbjct: 579 KQIRFNIHNKYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQH 638
Query: 324 NIASNLMN-LVMQFRKVCNHP-ELFERRDAKAP--LAMSCEDYHRLYRGRQMEREEGTIL 379
+ N N L++ V N+ EL + P + S + R++ + +E +I
Sbjct: 639 LMTINARNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIY 698
Query: 380 PE--FPHVPR--DPVILPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQL 435
+ H + P IL + + + A+ +K ++ ++S ++
Sbjct: 699 EKERIAHAKQIIKPFILRRVKEEVLKLLPPKKDRIELCAMSEK---QEQLYSGLFNRLKK 755
Query: 436 S-NNIASN--LMNLVMQFRKVCNHPEL 459
S NN+ N + N++MQ RK+ NHP L
Sbjct: 756 SINNLEKNTEMCNVMMQLRKMANHPLL 782
Score = 39 (18.8 bits), Expect = 8.7e-56, Sum P(2) = 8.7e-56
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEF 534
L +L+ LLK + R+ +Q+++ I L++EF
Sbjct: 878 LDILEVLLKHHQHRYLRLDGKTQISERIHLIDEF 911
>UNIPROTKB|F1SSZ2 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:FP102454 Ensembl:ENSSSCT00000019561 Uniprot:F1SSZ2
Length = 1667
Score = 517 (187.1 bits), Expect = 3.0e-67, Sum P(2) = 3.0e-67
Identities = 125/330 (37%), Positives = 187/330 (56%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L YQL+G+NWL + QG + ILADEMGLGKTVQ+I FL + + GP+L+ +P
Sbjct: 614 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 673
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWD------MKNLHTK---DA 145
ST+ NW++E E + PDF VV Y G + R ++R+ F D K K
Sbjct: 674 LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQI 733
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
FHV++TSY+L+ D I+W L++DEA +K++ S +++L + +LLL+GT
Sbjct: 734 KFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGT 793
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN++ EL+ LL+F+ P F++ + F E F+ DI E + +LH +L P
Sbjct: 794 PLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISK---------EDQIKKLHDLLGPH 843
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
MLRR+K DV + K E++V L+ QK Y + + E L +S GG Q+S
Sbjct: 844 MLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR-NFEAL--NSKGGGNQVS--- 897
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAPL 355
L+N++M +K CNHP LF +AP+
Sbjct: 898 ---LLNIMMDLKKCCNHPYLFPVAAVEAPV 924
Score = 212 (79.7 bits), Expect = 3.0e-67, Sum P(2) = 3.0e-67
Identities = 49/124 (39%), Positives = 74/124 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M +K CNHP LF +AP V+P ++ + +LV +GKL
Sbjct: 897 SLLNIMMDLKKCCNHPYLFPVAAVEAP--------VLPNGSYDGS------SLVKSSGKL 942
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +LK+L+ GHRVL++SQMTKM+DLLE+F+ Y Y++ R+DG R+ D F
Sbjct: 943 MLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRF 1002
Query: 559 AVPG 562
PG
Sbjct: 1003 NAPG 1006
>UNIPROTKB|F1RIM3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:FP102454 Ensembl:ENSSSCT00000003736 Uniprot:F1RIM3
Length = 1723
Score = 517 (187.1 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
Identities = 125/330 (37%), Positives = 187/330 (56%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L YQL+G+NWL + QG + ILADEMGLGKTVQ+I FL + + GP+L+ +P
Sbjct: 630 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 689
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWD------MKNLHTK---DA 145
ST+ NW++E E + PDF VV Y G + R ++R+ F D K K
Sbjct: 690 LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQI 749
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
FHV++TSY+L+ D I+W L++DEA +K++ S +++L + +LLL+GT
Sbjct: 750 KFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGT 809
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN++ EL+ LL+F+ P F++ + F E F+ DI E + +LH +L P
Sbjct: 810 PLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISK---------EDQIKKLHDLLGPH 859
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
MLRR+K DV + K E++V L+ QK Y + + E L +S GG Q+S
Sbjct: 860 MLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR-NFEAL--NSKGGGNQVS--- 913
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAPL 355
L+N++M +K CNHP LF +AP+
Sbjct: 914 ---LLNIMMDLKKCCNHPYLFPVAAVEAPV 940
Score = 212 (79.7 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
Identities = 49/124 (39%), Positives = 74/124 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M +K CNHP LF +AP V+P ++ + +LV +GKL
Sbjct: 913 SLLNIMMDLKKCCNHPYLFPVAAVEAP--------VLPNGSYDGS------SLVKSSGKL 958
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +LK+L+ GHRVL++SQMTKM+DLLE+F+ Y Y++ R+DG R+ D F
Sbjct: 959 MLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRF 1018
Query: 559 AVPG 562
PG
Sbjct: 1019 NAPG 1022
Score = 39 (18.8 bits), Expect = 5.4e-49, Sum P(2) = 5.4e-49
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 360 EDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLP 400
ED H G++ REE L E P LP++ LP
Sbjct: 1533 EDKHESSDGKERAREER--LEEAEKAQPSPEQLPKEEV-LP 1570
>UNIPROTKB|E2R1M3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:AAEX03003895 EMBL:AAEX03003896 EMBL:AAEX03003897
Ensembl:ENSCAFT00000031086 Uniprot:E2R1M3
Length = 1812
Score = 517 (187.1 bits), Expect = 3.9e-67, Sum P(2) = 3.9e-67
Identities = 125/330 (37%), Positives = 187/330 (56%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L YQL+G+NWL + QG + ILADEMGLGKTVQ+I FL + + GP+L+ +P
Sbjct: 561 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 620
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWD------MKNLHTK---DA 145
ST+ NW++E E + PDF VV Y G + R ++R+ F D K K
Sbjct: 621 LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQI 680
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
FHV++TSY+L+ D I+W L++DEA +K++ S +++L + +LLL+GT
Sbjct: 681 KFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGT 740
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN++ EL+ LL+F+ P F++ + F E F+ DI E + +LH +L P
Sbjct: 741 PLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISK---------EDQIKKLHDLLGPH 790
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
MLRR+K DV + K E++V L+ QK Y + + E L +S GG Q+S
Sbjct: 791 MLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR-NFEAL--NSKGGGNQVS--- 844
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAPL 355
L+N++M +K CNHP LF +AP+
Sbjct: 845 ---LLNIMMDLKKCCNHPYLFPVAAVEAPV 871
Score = 212 (79.7 bits), Expect = 3.9e-67, Sum P(2) = 3.9e-67
Identities = 49/124 (39%), Positives = 74/124 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M +K CNHP LF +AP V+P ++ + +LV +GKL
Sbjct: 844 SLLNIMMDLKKCCNHPYLFPVAAVEAP--------VLPNGSYDGS------SLVKSSGKL 889
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +LK+L+ GHRVL++SQMTKM+DLLE+F+ Y Y++ R+DG R+ D F
Sbjct: 890 MLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRF 949
Query: 559 AVPG 562
PG
Sbjct: 950 NAPG 953
Score = 42 (19.8 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 391 ILPQQPTYLPVCFFES-TQNMVSPALKKKIK 420
+ PQQP PV ++ T+ P ++KKIK
Sbjct: 91 VSPQQPPQ-PVPIRKAKTKEGKGPGVRKKIK 120
>UNIPROTKB|F1MFF9 [details] [associations]
symbol:Bt.62145 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:DAAA02043090 IPI:IPI00688794
Ensembl:ENSBTAT00000010688 Uniprot:F1MFF9
Length = 1852
Score = 517 (187.1 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 125/330 (37%), Positives = 187/330 (56%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L YQL+G+NWL + QG + ILADEMGLGKTVQ+I FL + + GP+L+ +P
Sbjct: 644 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 703
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWD------MKNLHTK---DA 145
ST+ NW++E E + PDF VV Y G + R ++R+ F D K K
Sbjct: 704 LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQI 763
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
FHV++TSY+L+ D I+W L++DEA +K++ S +++L + +LLL+GT
Sbjct: 764 KFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGT 823
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN++ EL+ LL+F+ P F++ + F E F+ DI E + +LH +L P
Sbjct: 824 PLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISK---------EDQIKKLHDLLGPH 873
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
MLRR+K DV + K E++V L+ QK Y + + E L +S GG Q+S
Sbjct: 874 MLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR-NFEAL--NSKGGGNQVS--- 927
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAPL 355
L+N++M +K CNHP LF +AP+
Sbjct: 928 ---LLNIMMDLKKCCNHPYLFPVAAVEAPV 954
Score = 212 (79.7 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 49/124 (39%), Positives = 74/124 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M +K CNHP LF +AP V+P ++ + +LV +GKL
Sbjct: 927 SLLNIMMDLKKCCNHPYLFPVAAVEAP--------VLPNGSYDGS------SLVKSSGKL 972
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +LK+L+ GHRVL++SQMTKM+DLLE+F+ Y Y++ R+DG R+ D F
Sbjct: 973 MLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRF 1032
Query: 559 AVPG 562
PG
Sbjct: 1033 NAPG 1036
>UNIPROTKB|Q8TDI0 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
EMBL:AF425231 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 OrthoDB:EOG4WH8JX
EMBL:AL035406 EMBL:AL117491 EMBL:AB007913 IPI:IPI00152535
PIR:T17269 RefSeq:NP_056372.1 UniGene:Hs.522898
ProteinModelPortal:Q8TDI0 SMR:Q8TDI0 IntAct:Q8TDI0 STRING:Q8TDI0
PhosphoSite:Q8TDI0 DMDM:51701343 PaxDb:Q8TDI0 PRIDE:Q8TDI0
DNASU:26038 Ensembl:ENST00000262450 GeneID:26038 KEGG:hsa:26038
UCSC:uc001amb.2 CTD:26038 GeneCards:GC01M006096 HGNC:HGNC:16816
HPA:HPA015809 MIM:610771 neXtProt:NX_Q8TDI0 PharmGKB:PA134969178
InParanoid:Q8TDI0 KO:K14435 OMA:KRIDDGD PhylomeDB:Q8TDI0
ChiTaRS:CHD5 GenomeRNAi:26038 NextBio:47863 ArrayExpress:Q8TDI0
Bgee:Q8TDI0 CleanEx:HS_CHD5 Genevestigator:Q8TDI0
GermOnline:ENSG00000116254 Uniprot:Q8TDI0
Length = 1954
Score = 517 (187.1 bits), Expect = 5.0e-67, Sum P(2) = 5.0e-67
Identities = 125/330 (37%), Positives = 187/330 (56%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L YQL+G+NWL + QG + ILADEMGLGKTVQ+I FL + + GP+L+ +P
Sbjct: 698 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 757
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWD------MKNLHTK---DA 145
ST+ NW++E E + PDF VV Y G + R ++R+ F D K K
Sbjct: 758 LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQI 817
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
FHV++TSY+L+ D I+W L++DEA +K++ S +++L + +LLL+GT
Sbjct: 818 KFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGT 877
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN++ EL+ LL+F+ P F++ + F E F+ DI E + +LH +L P
Sbjct: 878 PLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISK---------EDQIKKLHDLLGPH 927
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
MLRR+K DV + K E++V L+ QK Y + + E L +S GG Q+S
Sbjct: 928 MLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR-NFEAL--NSKGGGNQVS--- 981
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAPL 355
L+N++M +K CNHP LF +AP+
Sbjct: 982 ---LLNIMMDLKKCCNHPYLFPVAAVEAPV 1008
Score = 212 (79.7 bits), Expect = 5.0e-67, Sum P(2) = 5.0e-67
Identities = 49/124 (39%), Positives = 74/124 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M +K CNHP LF +AP V+P ++ + +LV +GKL
Sbjct: 981 SLLNIMMDLKKCCNHPYLFPVAAVEAP--------VLPNGSYDGS------SLVKSSGKL 1026
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +LK+L+ GHRVL++SQMTKM+DLLE+F+ Y Y++ R+DG R+ D F
Sbjct: 1027 MLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRF 1086
Query: 559 AVPG 562
PG
Sbjct: 1087 NAPG 1090
>RGD|1582725 [details] [associations]
symbol:Chd5 "chromodomain helicase DNA binding protein 5"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1582725 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OrthoDB:EOG4WH8JX
IPI:IPI00948282 Ensembl:ENSRNOT00000067364 UCSC:RGD:1582725
ArrayExpress:D4A5U0 Uniprot:D4A5U0
Length = 1940
Score = 518 (187.4 bits), Expect = 6.2e-67, Sum P(2) = 6.2e-67
Identities = 125/330 (37%), Positives = 187/330 (56%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L YQL+G+NWL + QG + ILADEMGLGKTVQ+I FL + + GP+L+ +P
Sbjct: 696 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 755
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWD------MKNLHTK---DA 145
ST+ NW++E E + PDF VV Y G + R ++R+ F D K K
Sbjct: 756 LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRGGKKVFRMKKEVQI 815
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
FHV++TSY+L+ D I+W L++DEA +K++ S +++L + +LLL+GT
Sbjct: 816 KFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGT 875
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN++ EL+ LL+F+ P F++ + F E F+ DI E + +LH +L P
Sbjct: 876 PLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISK---------EDQIKKLHDLLGPH 925
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
MLRR+K DV + K E++V L+ QK Y + + E L +S GG Q+S
Sbjct: 926 MLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR-NFEAL--NSKGGGNQVS--- 979
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAPL 355
L+N++M +K CNHP LF +AP+
Sbjct: 980 ---LLNIMMDLKKCCNHPYLFPVAAVEAPM 1006
Score = 210 (79.0 bits), Expect = 6.2e-67, Sum P(2) = 6.2e-67
Identities = 48/124 (38%), Positives = 74/124 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M +K CNHP LF +AP+ +P ++ + +LV +GKL
Sbjct: 979 SLLNIMMDLKKCCNHPYLFPVAAVEAPM--------LPNGSYDGS------SLVKSSGKL 1024
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +LK+L+ GHRVL++SQMTKM+DLLE+F+ Y Y++ R+DG R+ D F
Sbjct: 1025 MLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRF 1084
Query: 559 AVPG 562
PG
Sbjct: 1085 NAPG 1088
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 503 (182.1 bits), Expect = 1.2e-66, Sum P(2) = 1.2e-66
Identities = 125/323 (38%), Positives = 188/323 (58%)
Query: 38 RGNLKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVW--GPFL 94
R L+ YQL+G+NWL N Y++ N ILADEMGLGKT+QSIAFL E Y+V GPFL
Sbjct: 34 RNQLREYQLEGVNWLLFNWYNRQ-NCILADEMGLGKTIQSIAFL---QEVYNVGIHGPFL 89
Query: 95 IISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW----DMKNLHTKDA-SFHV 149
+I+P ST+ NW++E + + + Y GS R++++Q+ D + A F
Sbjct: 90 VIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDA 148
Query: 150 VITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQN 209
+IT++++++SD I+W+ +I+DEA +K+ + L +++LL+GTP+QN
Sbjct: 149 LITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQN 208
Query: 210 SMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRR 269
++ EL++LLHF+ PS F S EF + F D+ KT E + +L ILKP MLRR
Sbjct: 209 TVEELFSLLHFLEPSQFPSESEFLKDFG-DL------KT---EEQVQKLQAILKPMMLRR 258
Query: 270 IKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNL 329
+K+DVE L+ K E ++ LT+ QK Y A+ +K + S G N+ NL
Sbjct: 259 LKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK----NFSFLSKGAG---HTNMP-NL 310
Query: 330 MNLVMQFRKVCNHPELFERRDAK 352
+N +M+ RK CNHP L + K
Sbjct: 311 LNTMMELRKCCNHPYLINGAEEK 333
Score = 207 (77.9 bits), Expect = 1.2e-66, Sum P(2) = 1.2e-66
Identities = 46/123 (37%), Positives = 73/123 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + K ++IP F H +V AGKL
Sbjct: 309 NLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPH-DF------HLQAMVRSAGKL 361
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL +LKA GH+VL++SQM + +D+LE++++ R+Y + R+DG + + R+ D F
Sbjct: 362 VLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRF 421
Query: 559 AVP 561
+ P
Sbjct: 422 SKP 424
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 563 (203.2 bits), Expect = 1.7e-66, Sum P(2) = 1.7e-66
Identities = 131/344 (38%), Positives = 203/344 (59%)
Query: 9 EVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNL--KHYQLKGMNWLANLYDQGINGILAD 66
E+ + ++Q T QP + +L K YQ G+NWLA L+ G+NGILAD
Sbjct: 399 EISNKLTKQVTKITEDGGCRWNIEQPSVLNQSLELKPYQKIGLNWLALLHKHGLNGILAD 458
Query: 67 EMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYW-GSP 125
EMGLGKT+Q+IAFL HI + D GP LI+ PASTL NW +E+ + P+ V+ Y+ GS
Sbjct: 459 EMGLGKTIQAIAFLAHIYQEGDR-GPHLIVVPASTLDNWIREVNLWCPELNVLFYYVGSQ 517
Query: 126 QERKILRQFWDMKNLHTKDASFHVVITSYQLVVS---DFKYFNRIKWQYLILDEAQAIKS 182
++RK LR D+ N + F+V++T+Y +S D F ++K Y I DE +K+
Sbjct: 518 EDRKHLRA--DISN---RVVDFNVIVTTYNCAISSSDDRSLFRKVKLNYAIFDEGHMLKN 572
Query: 183 SSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSH-DEFNEWFSKDIE 241
SS+R++ L+ + ++RLLL+GTP+QN++ EL +LL+F+MP MF S E FS +
Sbjct: 573 MSSVRYQQLMRINAKHRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKAK 632
Query: 242 SHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSAL 301
+ AE +++ ++ ++ I+KPF+LRR+K +V +L K + + C ++ +Q+ LY L
Sbjct: 633 T-AEEQSTYEKERIAHAKQIIKPFILRRVKDEVLKQLPPKKDHIELCAMSEKQEQLYCDL 691
Query: 302 KKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPEL 345
K+K + G N S++ N +MQ RK+ NHP L
Sbjct: 692 LNKLK-----KTMKG------NEKNSDMGNAMMQLRKMANHPLL 724
Score = 146 (56.5 bits), Expect = 1.7e-66, Sum P(2) = 1.7e-66
Identities = 27/60 (45%), Positives = 45/60 (75%)
Query: 495 VYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISER 554
+ D+GK VL+ LL LK G RV+++SQ T ++D+LE F+ + ++R++RLDG ++IS+R
Sbjct: 787 ILDSGKFRVLERLLSDLKEKGDRVVLFSQFTMVLDILEVFLKHWQHRYIRLDGKTQISDR 846
Score = 67 (28.6 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 34/143 (23%), Positives = 58/143 (40%)
Query: 321 LSNNIAS--NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREEGTI 378
+ NN+ +L+N VM + E+ +KA A Y + ++ + I
Sbjct: 597 VQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKAKTAEEQSTYEK----ERIAHAKQII 652
Query: 379 LPEFPHVPRDPVI--LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLS 436
P +D V+ LP + ++ +C Q + L K+K + G
Sbjct: 653 KPFILRRVKDEVLKQLPPKKDHIELCAMSEKQEQLYCDLLNKLK-----KTMKG------ 701
Query: 437 NNIASNLMNLVMQFRKVCNHPEL 459
N S++ N +MQ RK+ NHP L
Sbjct: 702 NEKNSDMGNAMMQLRKMANHPLL 724
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 513 (185.6 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 123/329 (37%), Positives = 185/329 (56%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L YQL+G+NWL + QG + ILADEMGLGKT+Q+I FL + + GPFL+ +P
Sbjct: 734 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWD---------MKNLHTKDA 145
ST+ NW++E + + P F VV Y G R I+R+ F D K
Sbjct: 794 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
FHV++TSY+L+ D I+W L++DEA +K++ S +++L G+ ++LLL+GT
Sbjct: 854 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGT 913
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN++ EL+ LL+F+ P F++ + F E F+ DI E + +LH +L P
Sbjct: 914 PLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISK---------EDQIKKLHDLLGPH 963
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
MLRR+K DV + K E++V L+ QK Y + + E L +S GG Q+S
Sbjct: 964 MLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTR-NFEAL--NSRGGGNQVS--- 1017
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++M +K CNHP LF ++P
Sbjct: 1018 ---LLNIMMDLKKCCNHPYLFPVAAMESP 1043
Score = 211 (79.3 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 49/124 (39%), Positives = 74/124 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M +K CNHP LF P+A + E +P +E L+ +GKL
Sbjct: 1017 SLLNIMMDLKKCCNHPYLF-------PVA-AMESPKLPSGAYEGG------ALIKSSGKL 1062
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +L++LK GHRVL++SQMTKM+DLLE+F+ Y Y++ R+DG + R+ D F
Sbjct: 1063 MLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRF 1122
Query: 559 AVPG 562
PG
Sbjct: 1123 NAPG 1126
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 513 (185.6 bits), Expect = 2.0e-66, Sum P(2) = 2.0e-66
Identities = 123/329 (37%), Positives = 185/329 (56%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L YQL+G+NWL + QG + ILADEMGLGKT+Q+I FL + + GPFL+ +P
Sbjct: 793 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 852
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWD---------MKNLHTKDA 145
ST+ NW++E + + P F VV Y G R I+R+ F D K
Sbjct: 853 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 912
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
FHV++TSY+L+ D I+W L++DEA +K++ S +++L G+ ++LLL+GT
Sbjct: 913 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGT 972
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN++ EL+ LL+F+ P F++ + F E F+ DI E + +LH +L P
Sbjct: 973 PLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISK---------EDQIKKLHDLLGPH 1022
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
MLRR+K DV + K E++V L+ QK Y + + E L +S GG Q+S
Sbjct: 1023 MLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTR-NFEAL--NSRGGGNQVS--- 1076
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++M +K CNHP LF ++P
Sbjct: 1077 ---LLNIMMDLKKCCNHPYLFPVAAMESP 1102
Score = 211 (79.3 bits), Expect = 2.0e-66, Sum P(2) = 2.0e-66
Identities = 49/124 (39%), Positives = 74/124 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M +K CNHP LF P+A + E +P +E L+ +GKL
Sbjct: 1076 SLLNIMMDLKKCCNHPYLF-------PVA-AMESPKLPSGAYEGG------ALIKSSGKL 1121
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +L++LK GHRVL++SQMTKM+DLLE+F+ Y Y++ R+DG + R+ D F
Sbjct: 1122 MLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRF 1181
Query: 559 AVPG 562
PG
Sbjct: 1182 NAPG 1185
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 538 (194.4 bits), Expect = 2.1e-66, Sum P(2) = 2.1e-66
Identities = 111/271 (40%), Positives = 170/271 (62%)
Query: 31 RPQPGLFRGN---LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY 87
+ QP G L+ YQL+G+NWLA+ + + + ILADEMGLGKT+Q+I+FL ++ +
Sbjct: 473 KKQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQH 532
Query: 88 DVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASF 147
++GPFLI+ P STL +WQ+E E + P+ VV Y G R +R++ + + TK F
Sbjct: 533 QLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREY-EWIHSQTKRLKF 591
Query: 148 HVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
+ +IT+Y++++ D I W +L +DEA +K+ S+ +K L+ F +RLL++GTP+
Sbjct: 592 NALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPL 651
Query: 208 QNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFML 267
QNS+ ELW+LLHFIMP F EF E F +D H + + E LH +L+PF+L
Sbjct: 652 QNSLKELWSLLHFIMPEKF----EFWEDFEED---HGKGR----ENGYQSLHKVLEPFLL 700
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
RR+KKDVE L K+E ++ +++ QK Y
Sbjct: 701 RRVKKDVEKSLPAKVEQILRVEMSALQKQYY 731
Score = 174 (66.3 bits), Expect = 2.1e-66, Sum P(2) = 2.1e-66
Identities = 44/110 (40%), Positives = 64/110 (58%)
Query: 441 SNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGK 500
S +N+VM+ +K CNH L K P E+ +E LL +L+ +GK
Sbjct: 751 SGFLNIVMELKKCCNHCYLI-----KPPEENERENG-------QEILL----SLIRSSGK 794
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
L +LD LL RL+ G+RVL++SQM +M+D+L E++ + Y F RLDGS K
Sbjct: 795 LILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIK 844
Score = 137 (53.3 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 55/212 (25%), Positives = 98/212 (46%)
Query: 230 DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCP 289
++F W + E H + + E LH +L+PF+LRR+KKDVE L K+E ++
Sbjct: 668 EKFEFWEDFE-EDHGKGR----ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVE 722
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNH------P 343
+++ QK Y + + + L + G + S +N+VM+ +K CNH P
Sbjct: 723 MSALQKQYYKWILTR-NYKALAKGTRGST--------SGFLNIVMELKKCCNHCYLIKPP 773
Query: 344 ELFERRDAKAPLAMSCEDYHRLYRGRQME---REEGTILPEFPHVPRDPVILPQQPTYLP 400
E ER + + L +L ++ RE G + F + R IL + YL
Sbjct: 774 EENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAE---YLT 830
Query: 401 VCFFESTQNMVSPALKKKIKIEDLIHSSSGGS 432
+ + + + ++K +I+ + L H ++ GS
Sbjct: 831 IKHYPFQR--LDGSIKGEIRKQALDHFNADGS 860
Score = 38 (18.4 bits), Expect = 4.3e-52, Sum P(2) = 4.3e-52
Identities = 22/104 (21%), Positives = 43/104 (41%)
Query: 276 NELSDKIEIMVYCPLTSR--QKLLYSALKKKIKIEDLI--HSSSGGSIQLSNNIASNLMN 331
+ + K ++ +Y +T ++ + KKK+ ++ L+ + G L NN S N
Sbjct: 904 HRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENN--SGRSN 961
Query: 332 LVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREE 375
++P F + + A L ED + G + E +E
Sbjct: 962 ---------SNP--FNKEELTAILKFGAEDLFKELEGEESEPQE 994
Score = 38 (18.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 160 DFKYFN-------RIKWQYLILDEAQAIKSSSS 185
D +YFN + QY I++ A+K+S S
Sbjct: 358 DVEYFNCQQELASELNKQYQIVERVIAVKTSKS 390
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 558 (201.5 bits), Expect = 2.4e-66, Sum P(2) = 2.4e-66
Identities = 124/321 (38%), Positives = 196/321 (61%)
Query: 33 QPGLFRGNL--KHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVW 90
QP + +L K YQ G+NWLA ++ G+NGILADEMGLGKT+Q+IAFL ++ + +
Sbjct: 489 QPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNK- 547
Query: 91 GPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVV 150
GP LI+ PAST+ NW +E+ + P KV+ Y+GS +ERK +R N+H++ ++V+
Sbjct: 548 GPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRY-----NIHSRYEEYNVI 602
Query: 151 ITSYQLVVS---DFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
+T+Y +S D F R+K Y I DE +K+ S+R++ L+ + NRLLL+GTP+
Sbjct: 603 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 662
Query: 208 QNSMAELWALLHFIMPSMFDSH-DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFM 266
QN++ EL +LL+F+MP MF S E FS + A+ ++ ++ ++ I+KPF+
Sbjct: 663 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKP-ADEQSIYEKERIAHAKQIIKPFI 721
Query: 267 LRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIA 326
LRR+K++V +L K + + C ++ +Q+ LY L ++K SI NN+
Sbjct: 722 LRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYMNLFNRLK----------KSI---NNME 768
Query: 327 SN--LMNLVMQFRKVCNHPEL 345
N + N++MQ RK+ NHP L
Sbjct: 769 KNTEMCNVMMQLRKMANHPLL 789
Score = 152 (58.6 bits), Expect = 2.4e-66, Sum P(2) = 2.4e-66
Identities = 28/63 (44%), Positives = 45/63 (71%)
Query: 492 LTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKI 551
+ L+ D+GK VL +L LK G RV+++SQ T M+D+LE + + ++R++RLDG ++I
Sbjct: 849 MDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 908
Query: 552 SER 554
SER
Sbjct: 909 SER 911
Score = 68 (29.0 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 46/209 (22%), Positives = 93/209 (44%)
Query: 268 RRIKKDVENELSD-KIEIMVY-CPLTSRQ-KLLYSALKKKIKIEDLIHSSSG-GSIQLSN 323
++I+ ++ + + + + Y C ++S + L+ LK I D H GSI+ +
Sbjct: 586 KQIRYNIHSRYEEYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQH 645
Query: 324 NIASNLMN-LVMQFRKVCNHP-ELFERRDAKAP--LAMSCEDYHRLYRGRQMEREEGTIL 379
+ N N L++ V N+ EL + P + S + R++ + +E +I
Sbjct: 646 LMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIY 705
Query: 380 PEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPALKKKIKI------EDLIHSSSGGSI 433
E + I+ +P L E + + P K +I++ ++ ++ + +
Sbjct: 706 -EKERIAHAKQII--KPFILRRVKEEVLKQL--PPKKDRIELCAMSEKQEQLYMNLFNRL 760
Query: 434 QLS-NNIASN--LMNLVMQFRKVCNHPEL 459
+ S NN+ N + N++MQ RK+ NHP L
Sbjct: 761 KKSINNMEKNTEMCNVMMQLRKMANHPLL 789
Score = 39 (18.8 bits), Expect = 1.9e-54, Sum P(2) = 1.9e-54
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEF 534
L +L+ LLK + R+ +Q+++ I L++EF
Sbjct: 885 LDILEVLLKHHQHRYLRLDGKTQISERIHLIDEF 918
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 519 (187.8 bits), Expect = 2.8e-66, Sum P(3) = 2.8e-66
Identities = 120/308 (38%), Positives = 181/308 (58%)
Query: 28 EVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY 87
E + Q GL +L+ YQL+G+NWLA + IL DEMGLGKT Q+IA ++A
Sbjct: 33 EQDLRQWGLTGIHLRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRL 92
Query: 88 DVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASF 147
+ GPFLI+ P S L NW++EM+RF P V Y G +ER L+Q D+K +++ F
Sbjct: 93 NDEGPFLILCPLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQ--DLK----QESRF 146
Query: 148 HVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
HV++T+Y++ + D + W L++DEA +K+ SS+ K L FS LLL+GTPI
Sbjct: 147 HVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPI 206
Query: 208 QNSMAELWALLHFIMPSMFDSHDEFNEWFSK--DIESHAENKTSIDERHLSRLHMILKPF 265
QNS+ EL++LL F+ P +F S +E ++ + DIE +E+ S LH +L+PF
Sbjct: 207 QNSLQELYSLLSFVEPDLF-SKEEVGDFIQRYQDIEKESESA--------SELHKLLQPF 257
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR+K +V EL K E+++Y +++ QK Y A+ +K D + + ++L N I
Sbjct: 258 LLRRVKAEVATELPKKTEVVIYHGMSALQKKYYKAIL--MKDLDAFENETAKKVKLQN-I 314
Query: 326 ASNLMNLV 333
S L V
Sbjct: 315 LSQLRKCV 322
Score = 156 (60.0 bits), Expect = 2.8e-66, Sum P(3) = 2.8e-66
Identities = 30/57 (52%), Positives = 44/57 (77%)
Query: 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISER 554
+GKL +LD LL L + GHRVL++SQMT+M+D+L+++M YR Y + R+DGS + ER
Sbjct: 346 SGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEER 402
Score = 134 (52.2 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 256 SRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSS 315
S LH +L+PF+LRR+K +V EL K E+++Y +++ QK Y A+ +K D + +
Sbjct: 248 SELHKLLQPFLLRRVKAEVATELPKKTEVVIYHGMSALQKKYYKAIL--MKDLDAFENET 305
Query: 316 GGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
++L N ++ Q RK +HP LF+
Sbjct: 306 AKKVKLQN--------ILSQLRKCVDHPYLFD 329
Score = 51 (23.0 bits), Expect = 2.8e-66, Sum P(3) = 2.8e-66
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 443 LMNLVMQFRKVCNHPELFE 461
L N++ Q RK +HP LF+
Sbjct: 311 LQNILSQLRKCVDHPYLFD 329
Score = 42 (19.8 bits), Expect = 6.9e-53, Sum P(3) = 6.9e-53
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 360 EDYHRLYRGRQMEREEGTILPEFPHV 385
+DY YRG ER +G++ E H+
Sbjct: 380 QDYMD-YRGYSYERVDGSVRGEERHL 404
Score = 37 (18.1 bits), Expect = 6.9e-53, Sum P(3) = 6.9e-53
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 421 IEDLIHSSSGGSIQLSNNI 439
+E++++ + +QL+N I
Sbjct: 475 VEEIVYRKAASKLQLTNMI 493
Score = 37 (18.1 bits), Expect = 2.0e-50, Sum P(2) = 2.0e-50
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 307 IEDLIHSSSGGSIQLSNNI 325
+E++++ + +QL+N I
Sbjct: 475 VEEIVYRKAASKLQLTNMI 493
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 513 (185.6 bits), Expect = 3.0e-66, Sum P(2) = 3.0e-66
Identities = 123/329 (37%), Positives = 185/329 (56%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L YQL+G+NWL + QG + ILADEMGLGKT+Q+I FL + + GPFL+ +P
Sbjct: 732 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 791
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWD---------MKNLHTKDA 145
ST+ NW++E + + P F VV Y G R I+R+ F D K
Sbjct: 792 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 851
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
FHV++TSY+L+ D I+W L++DEA +K++ S +++L G+ ++LLL+GT
Sbjct: 852 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGT 911
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN++ EL+ LL+F+ P F++ + F E F+ DI E + +LH +L P
Sbjct: 912 PLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISK---------EDQIKKLHDLLGPH 961
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
MLRR+K DV + K E++V L+ QK Y + + E L +S GG Q+S
Sbjct: 962 MLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTR-NFEAL--NSRGGGNQVS--- 1015
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++M +K CNHP LF ++P
Sbjct: 1016 ---LLNIMMDLKKCCNHPYLFPVAAMESP 1041
Score = 209 (78.6 bits), Expect = 3.0e-66, Sum P(2) = 3.0e-66
Identities = 49/124 (39%), Positives = 74/124 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M +K CNHP LF P+A + E +P +E L+ +GKL
Sbjct: 1015 SLLNIMMDLKKCCNHPYLF-------PVA-AMESPKLPSGAYEGG------ALIKASGKL 1060
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +L++LK GHRVL++SQMTKM+DLLE+F+ Y Y++ R+DG + R+ D F
Sbjct: 1061 MLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRF 1120
Query: 559 AVPG 562
PG
Sbjct: 1121 NAPG 1124
>FB|FBgn0250786 [details] [associations]
symbol:Chd1 "Chromodomain-helicase-DNA-binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005703 "polytene chromosome puff" evidence=IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0035042 "fertilization,
exchange of chromosomal proteins" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
EMBL:AE014134 GO:GO:0006355 GO:GO:0003677 GO:GO:0048477
GO:GO:0006351 GO:GO:0003682 GO:GO:0004386 GO:GO:0007476
InterPro:IPR016197 SUPFAM:SSF54160 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 GO:GO:0005703
InterPro:IPR025260 Pfam:PF13907 EMBL:L77907 PIR:T13944
RefSeq:NP_477197.1 ProteinModelPortal:Q7KU24 SMR:Q7KU24
STRING:Q7KU24 PaxDb:Q7KU24 PRIDE:Q7KU24 EnsemblMetazoa:FBtr0077674
GeneID:33505 KEGG:dme:Dmel_CG3733 UCSC:CG3733-RA CTD:1105
FlyBase:FBgn0250786 GeneTree:ENSGT00560000076896 InParanoid:Q7KU24
KO:K11367 OrthoDB:EOG45MKM5 PhylomeDB:Q7KU24 ChiTaRS:CHD1
GenomeRNAi:33505 NextBio:783939 Bgee:Q7KU24 GO:GO:0005705
GO:GO:0035042 Uniprot:Q7KU24
Length = 1883
Score = 538 (194.4 bits), Expect = 3.0e-66, Sum P(2) = 3.0e-66
Identities = 116/310 (37%), Positives = 188/310 (60%)
Query: 23 PSFSTEVERPQPGLFRG-NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLC 81
P FS +P+ L G L+ YQ+ G+NWL + + + + ILADEMGLGKT+Q+I FL
Sbjct: 510 PKFSRIKNQPE-FLSSGLTLRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTICFLY 568
Query: 82 HIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQF-WDMKNL 140
+ + + ++GPFL + P ST+ WQ+E + + PD VV Y G + R++++Q+ W ++
Sbjct: 569 SLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDMNVVTYLGDIKSRELIQQYEWQFES- 627
Query: 141 HTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRL 200
+K F+ ++T+Y++V+ D ++ ++W L++DEA +K+ S+ +K L F +RL
Sbjct: 628 -SKRLKFNCILTTYEIVLKDKQFLGTLQWAALLVDEAHRLKNDDSLLYKSLKEFDTNHRL 686
Query: 201 LLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHM 260
L++GTP+QNS+ ELWALLHFIMP D+F+ W + +++ H + +++ +RLH
Sbjct: 687 LITGTPLQNSLKELWALLHFIMP------DKFDTWENFEVQ-HG----NAEDKGYTRLHQ 735
Query: 261 ILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYS-ALKKKIKIEDLIHSSSGGSI 319
L+P++LRR+KKDVE L K+E ++ +TS QK Y L K D + GS
Sbjct: 736 QLEPYILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNF---DALRKGKRGST 792
Query: 320 QLSNNIASNL 329
NI L
Sbjct: 793 STFLNIVIEL 802
Score = 183 (69.5 bits), Expect = 3.0e-66, Sum P(2) = 3.0e-66
Identities = 46/115 (40%), Positives = 68/115 (59%)
Query: 441 SNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGK 500
S +N+V++ +K CNH L P ++ + L +EAL TL+ +GK
Sbjct: 793 STFLNIVIELKKCCNHAALIR------P-----SEFELMGLQQDEALQ----TLLKGSGK 837
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR 555
L +LD LL RLK +GHRVL++SQM +M+D+L +++ R + F RLDGS K RR
Sbjct: 838 LVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEMRR 892
Score = 149 (57.5 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 38/117 (32%), Positives = 63/117 (53%)
Query: 230 DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCP 289
D+F+ W + +++ H + +++ +RLH L+P++LRR+KKDVE L K+E ++
Sbjct: 710 DKFDTWENFEVQ-HG----NAEDKGYTRLHQQLEPYILRRVKKDVEKSLPAKVEQILRVE 764
Query: 290 LTSRQKLLYS-ALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPEL 345
+TS QK Y L K D + GS S +N+V++ +K CNH L
Sbjct: 765 MTSLQKQYYKWILTKNF---DALRKGKRGS-------TSTFLNIVIELKKCCNHAAL 811
Score = 40 (19.1 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 366 YRGRQMEREEGTILPEFPHVPRDPVILPQQPT-YLP 400
Y G R +G P P R P P+ Y P
Sbjct: 1737 YEGGSNSRRQGPTSPSTPRTGRGGYDPPPAPSGYTP 1772
Score = 39 (18.8 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 218 LHFIMPSMFDSHDEFNEWFSKDIESHAE 245
++ I + FD H F+E + D E+ A+
Sbjct: 340 IYAIEENGFDPHAGFDEKQTPDAETEAQ 367
>UNIPROTKB|F1ST12 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 CTD:1107 KO:K11642 OMA:EPEPGYR
EMBL:CU972380 RefSeq:XP_003132000.1 UniGene:Ssc.1663
Ensembl:ENSSSCT00000019548 GeneID:100188906 KEGG:ssc:100188906
Uniprot:F1ST12
Length = 2002
Score = 513 (185.6 bits), Expect = 3.0e-66, Sum P(2) = 3.0e-66
Identities = 123/329 (37%), Positives = 185/329 (56%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L YQL+G+NWL + QG + ILADEMGLGKT+Q+I FL + + GPFL+ +P
Sbjct: 734 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWD---------MKNLHTKDA 145
ST+ NW++E + + P F VV Y G R I+R+ F D K
Sbjct: 794 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
FHV++TSY+L+ D I+W L++DEA +K++ S +++L G+ ++LLL+GT
Sbjct: 854 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGT 913
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN++ EL+ LL+F+ P F++ + F E F+ DI E + +LH +L P
Sbjct: 914 PLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISK---------EDQIKKLHDLLGPH 963
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
MLRR+K DV + K E++V L+ QK Y + + E L +S GG Q+S
Sbjct: 964 MLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTR-NFEAL--NSRGGGNQVS--- 1017
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++M +K CNHP LF ++P
Sbjct: 1018 ---LLNIMMDLKKCCNHPYLFPVAAMESP 1043
Score = 209 (78.6 bits), Expect = 3.0e-66, Sum P(2) = 3.0e-66
Identities = 49/124 (39%), Positives = 74/124 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M +K CNHP LF P+A + E +P +E L+ +GKL
Sbjct: 1017 SLLNIMMDLKKCCNHPYLF-------PVA-AMESPKLPSGAYEGG------ALIKASGKL 1062
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +L++LK GHRVL++SQMTKM+DLLE+F+ Y Y++ R+DG + R+ D F
Sbjct: 1063 MLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRF 1122
Query: 559 AVPG 562
PG
Sbjct: 1123 NAPG 1126
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 536 (193.7 bits), Expect = 1.1e-65, Sum P(2) = 1.1e-65
Identities = 111/271 (40%), Positives = 170/271 (62%)
Query: 31 RPQPGLFRGN---LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY 87
+ QP G L+ YQL+G+NWLA+ + + + ILADEMGLGKT+Q+I+FL ++ +
Sbjct: 471 KKQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQH 530
Query: 88 DVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASF 147
++GPFLI+ P STL +WQ+E E + P+ VV Y G R +R++ + + TK F
Sbjct: 531 QLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREY-EWIHSQTKRLKF 589
Query: 148 HVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
+ +IT+Y++++ D I W +L +DEA +K+ S+ +K L+ F +RLL++GTP+
Sbjct: 590 NALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPL 649
Query: 208 QNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFML 267
QNS+ ELW+LLHFIMP F EF E F +D H + + E LH +L+PF+L
Sbjct: 650 QNSLKELWSLLHFIMPEKF----EFWEDFEED---HGKGR----ENGYQSLHKVLEPFLL 698
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
RR+KKDVE L K+E ++ +++ QK Y
Sbjct: 699 RRVKKDVEKSLPAKVEQILRVEMSALQKQYY 729
Score = 175 (66.7 bits), Expect = 1.1e-65, Sum P(2) = 1.1e-65
Identities = 44/110 (40%), Positives = 64/110 (58%)
Query: 441 SNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGK 500
S +N+VM+ +K CNH L K P E+ +E LL +L+ +GK
Sbjct: 749 SGFLNIVMELKKCCNHCYLI-----KPPEENERENG-------QEVLL----SLIRSSGK 792
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
L +LD LL RL+ G+RVL++SQM +M+D+L E++ + Y F RLDGS K
Sbjct: 793 LILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIK 842
Score = 138 (53.6 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 55/212 (25%), Positives = 98/212 (46%)
Query: 230 DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCP 289
++F W + E H + + E LH +L+PF+LRR+KKDVE L K+E ++
Sbjct: 666 EKFEFWEDFE-EDHGKGR----ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVE 720
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNH------P 343
+++ QK Y + + + L + G + S +N+VM+ +K CNH P
Sbjct: 721 MSALQKQYYKWILTR-NYKALAKGTRGST--------SGFLNIVMELKKCCNHCYLIKPP 771
Query: 344 ELFERRDAKAPLAMSCEDYHRLYRGRQME---REEGTILPEFPHVPRDPVILPQQPTYLP 400
E ER + + L +L ++ RE G + F + R IL + YL
Sbjct: 772 EENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAE---YLT 828
Query: 401 VCFFESTQNMVSPALKKKIKIEDLIHSSSGGS 432
+ + + + ++K +I+ + L H ++ GS
Sbjct: 829 IKHYPFQR--LDGSIKGEIRKQALDHFNADGS 858
Score = 41 (19.5 bits), Expect = 9.6e-08, Sum P(3) = 9.6e-08
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 358 SCED-YHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYL 399
SC D +H + + E L + P V L +QPTYL
Sbjct: 439 SCIDSFHSRNNSKTIPTRECKALKQRPRF----VALKKQPTYL 477
Score = 38 (18.4 bits), Expect = 2.8e-51, Sum P(2) = 2.8e-51
Identities = 22/104 (21%), Positives = 43/104 (41%)
Query: 276 NELSDKIEIMVYCPLTSR--QKLLYSALKKKIKIEDLI--HSSSGGSIQLSNNIASNLMN 331
+ + K ++ +Y +T ++ + KKK+ ++ L+ + G L NN S N
Sbjct: 902 HRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENN--SGRSN 959
Query: 332 LVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREE 375
++P F + + A L ED + G + E +E
Sbjct: 960 ---------SNP--FNKEELTAILKFGAEDLFKELEGEESEPQE 992
Score = 38 (18.4 bits), Expect = 9.6e-08, Sum P(3) = 9.6e-08
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 160 DFKYFN-------RIKWQYLILDEAQAIKSSSS 185
D +YFN + QY I++ A+K+S S
Sbjct: 359 DVEYFNCQQELASELNKQYQIVERVIAVKTSKS 391
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 538 (194.4 bits), Expect = 1.1e-65, Sum P(2) = 1.1e-65
Identities = 111/271 (40%), Positives = 170/271 (62%)
Query: 31 RPQPGLFRGN---LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY 87
+ QP G L+ YQL+G+NWLA+ + + + ILADEMGLGKT+Q+I+FL ++ +
Sbjct: 453 KKQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQH 512
Query: 88 DVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASF 147
++GPFLI+ P STL +WQ+E E + P+ VV Y G R +R++ + + TK F
Sbjct: 513 QLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREY-EWIHSQTKRLKF 571
Query: 148 HVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
+ +IT+Y++++ D I W +L +DEA +K+ S+ +K L+ F +RLL++GTP+
Sbjct: 572 NALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPL 631
Query: 208 QNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFML 267
QNS+ ELW+LLHFIMP F EF E F +D H + + E LH +L+PF+L
Sbjct: 632 QNSLKELWSLLHFIMPEKF----EFWEDFEED---HGKGR----ENGYQSLHKVLEPFLL 680
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
RR+KKDVE L K+E ++ +++ QK Y
Sbjct: 681 RRVKKDVEKSLPAKVEQILRVEMSALQKQYY 711
Score = 177 (67.4 bits), Expect = 1.1e-65, Sum P(2) = 1.1e-65
Identities = 44/110 (40%), Positives = 64/110 (58%)
Query: 441 SNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGK 500
S +N+VM+ +K CNH L K P E+ +E LL +L+ +GK
Sbjct: 731 SGFLNIVMELKKCCNHCHLI-----KPPEENERENG-------QEVLL----SLIRSSGK 774
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
L +LD LL RL+ G+RVL++SQM +M+D+L E++ + Y F RLDGS K
Sbjct: 775 LILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIK 824
Score = 138 (53.6 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 55/212 (25%), Positives = 98/212 (46%)
Query: 230 DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCP 289
++F W + E H + + E LH +L+PF+LRR+KKDVE L K+E ++
Sbjct: 648 EKFEFWEDFE-EDHGKGR----ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVE 702
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNH------P 343
+++ QK Y + + + L + G + S +N+VM+ +K CNH P
Sbjct: 703 MSALQKQYYKWILTR-NYKALAKGTRGST--------SGFLNIVMELKKCCNHCHLIKPP 753
Query: 344 ELFERRDAKAPLAMSCEDYHRLYRGRQME---REEGTILPEFPHVPRDPVILPQQPTYLP 400
E ER + + L +L ++ RE G + F + R IL + YL
Sbjct: 754 EENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAE---YLT 810
Query: 401 VCFFESTQNMVSPALKKKIKIEDLIHSSSGGS 432
+ + + + ++K +I+ + L H ++ GS
Sbjct: 811 IKHYPFQR--LDGSIKGEIRKQALDHFNADGS 840
Score = 38 (18.4 bits), Expect = 4.8e-51, Sum P(2) = 4.8e-51
Identities = 22/104 (21%), Positives = 43/104 (41%)
Query: 276 NELSDKIEIMVYCPLTSR--QKLLYSALKKKIKIEDLI--HSSSGGSIQLSNNIASNLMN 331
+ + K ++ +Y +T ++ + KKK+ ++ L+ + G L NN S N
Sbjct: 884 HRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENN--SGRSN 941
Query: 332 LVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREE 375
++P F + + A L ED + G + E +E
Sbjct: 942 ---------SNP--FNKEELTAILKFGAEDLFKELEGEESEPQE 974
Score = 38 (18.4 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 160 DFKYFN-------RIKWQYLILDEAQAIKSSSS 185
D +YFN + QY I++ A+K+S S
Sbjct: 338 DVEYFNCQQELASELNKQYQIVERVIAVKTSKS 370
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 513 (185.6 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 123/329 (37%), Positives = 185/329 (56%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L YQL+G+NWL + QG + ILADEMGLGKT+Q+I FL + + GPFL+ +P
Sbjct: 730 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 789
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWD---------MKNLHTKDA 145
ST+ NW++E + + P F VV Y G R I+R+ F D K
Sbjct: 790 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 849
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
FHV++TSY+L+ D I+W L++DEA +K++ S +++L G+ ++LLL+GT
Sbjct: 850 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGT 909
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN++ EL+ LL+F+ P F++ + F E F+ DI E + +LH +L P
Sbjct: 910 PLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISK---------EDQIKKLHDLLGPH 959
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
MLRR+K DV + K E++V L+ QK Y + + E L +S GG Q+S
Sbjct: 960 MLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTR-NFEAL--NSRGGGNQVS--- 1013
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++M +K CNHP LF ++P
Sbjct: 1014 ---LLNIMMDLKKCCNHPYLFPVAAMESP 1039
Score = 203 (76.5 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 44/106 (41%), Positives = 67/106 (63%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M +K CNHP LF P+A + E +P +E L+ +GKL
Sbjct: 1013 SLLNIMMDLKKCCNHPYLF-------PVA-AMESPKLPSGAYEGG------ALIKASGKL 1058
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDG 547
+L +L++LK GHRVL++SQMTKM+DLLE+F+ Y Y++ R+DG
Sbjct: 1059 MLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDG 1104
>TAIR|locus:2054955 [details] [associations]
symbol:ASG3 "ALTERED SEED GERMINATION 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00520375 RefSeq:NP_973689.2 UniGene:At.47803
ProteinModelPortal:F4IV45 SMR:F4IV45 PRIDE:F4IV45
EnsemblPlants:AT2G44980.2 GeneID:819106 KEGG:ath:AT2G44980
OMA:WALMHFC PhylomeDB:F4IV45 ArrayExpress:F4IV45 Uniprot:F4IV45
Length = 877
Score = 520 (188.1 bits), Expect = 1.4e-65, Sum P(2) = 1.4e-65
Identities = 127/349 (36%), Positives = 202/349 (57%)
Query: 7 AVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILA- 65
A E+ ++ +F +T P S + G+ LK +Q++G++WL Y G+N +L
Sbjct: 24 AAEIILEKEAKFSNTPPDCS------EFGV-TATLKPHQVEGVSWLIQKYLLGVNVVLEL 76
Query: 66 DEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSP 125
D+MGLGKT+Q+I+FL ++ + GPFL++ P S W E+ RF P+ +V+ Y G
Sbjct: 77 DQMGLGKTLQAISFLSYLKFRQGLPGPFLVLCPLSVTDGWVSEINRFTPNLEVLRYVGDK 136
Query: 126 QERKILRQ-FWDMKNLHTKD--ASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKS 182
R +R+ +D +K F V++T+Y + + D + ++I WQY I+DEAQ +K+
Sbjct: 137 YCRLDMRKSMYDHVKKSSKGHFLPFDVLLTTYDIALVDQDFLSQIPWQYAIIDEAQRLKN 196
Query: 183 SSSMRWKLLLG-FSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIE 241
+S+ + +LL F RLL++GTPIQN++ ELWAL+HF MP +F + D+F F + +
Sbjct: 197 PNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCMPLVFGTLDQFLSAFKETGD 256
Query: 242 SHAENKTSIDERHLSRLHMILKPFMLRRIKKD-VENE---LSDKIEIMVYCPLTSRQKLL 297
+ S D+ L IL FMLRR K +E+ L E+ V PL S QK +
Sbjct: 257 GLSGLDVSNDKETYKSLKFILGAFMLRRTKSLLIESGNLVLPPLTELTVMVPLVSLQKKI 316
Query: 298 YSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELF 346
Y+++ +K ++ L+ SSGGS N+ ++L N+V+Q RK C+HP LF
Sbjct: 317 YTSILRK-ELPGLLELSSGGS----NH--TSLQNIVIQLRKACSHPYLF 358
Score = 179 (68.1 bits), Expect = 1.4e-65, Sum P(2) = 1.4e-65
Identities = 36/61 (59%), Positives = 46/61 (75%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV +GKL VLD LLKRL SGHRVL++SQMT +D+L++FM R+Y + RLDGS + E
Sbjct: 372 LVQASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEE 431
Query: 554 R 554
R
Sbjct: 432 R 432
Score = 86 (35.3 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 59/233 (25%), Positives = 106/233 (45%)
Query: 238 KDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCP-LTSRQKL 296
K + H + K+S + H ++L + + + +D +++ + I+ L + +
Sbjct: 144 KSMYDHVK-KSS--KGHFLPFDVLLTTYDIALVDQDFLSQIPWQYAIIDEAQRLKNPNSV 200
Query: 297 LYSALKKKIKIEDLIHSSSGGSIQLSNNIAS--NLMNLVMQ--FRKVCNHPELF-ERRDA 351
LY+ L ++ I + +G IQ NN+ LM+ M F + F E D
Sbjct: 201 LYNVLLEQFLIPRRL-LITGTPIQ--NNLTELWALMHFCMPLVFGTLDQFLSAFKETGDG 257
Query: 352 KAPLAMSC--EDYHRL--YRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFEST 407
+ L +S E Y L G M R ++L E ++ P L + +P+ S
Sbjct: 258 LSGLDVSNDKETYKSLKFILGAFMLRRTKSLLIESGNLVLPP--LTELTVMVPLV---SL 312
Query: 408 QNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELF 460
Q + ++ +K ++ L+ SSGGS N+ ++L N+V+Q RK C+HP LF
Sbjct: 313 QKKIYTSILRK-ELPGLLELSSGGS----NH--TSLQNIVIQLRKACSHPYLF 358
>WB|WBGene00000482 [details] [associations]
symbol:chd-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IMP] [GO:0001709 "cell fate
determination" evidence=IMP] [GO:0000118 "histone deacetylase
complex" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003682 GO:GO:0006338
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0001709 GO:GO:0046580 GO:GO:0008026 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0000118 GeneTree:ENSGT00560000076896
EMBL:AF308444 EMBL:Z67884 EMBL:Z67881 PIR:T20160 RefSeq:NP_510140.1
UniGene:Cel.16950 ProteinModelPortal:Q22516 SMR:Q22516
STRING:Q22516 PaxDb:Q22516 EnsemblMetazoa:T14G8.1 GeneID:181421
KEGG:cel:CELE_T14G8.1 UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1
HOGENOM:HOG000231124 InParanoid:Q22516 OMA:INIIMEL NextBio:913870
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
Uniprot:Q22516
Length = 1787
Score = 522 (188.8 bits), Expect = 1.4e-65, Sum P(2) = 1.4e-65
Identities = 124/330 (37%), Positives = 193/330 (58%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
GNL YQL+G+NWL + + G + ILADEMGLGKTVQS+ FL + + GPFLI +P
Sbjct: 614 GNLHPYQLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAP 673
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWD--------MKNLHT-KDA 145
ST+ NW++E E + PDF VV Y G + R ++R+ F D + + T ++
Sbjct: 674 LSTIINWEREAELWCPDFYVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLENL 733
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
FHV++TSY+ + D + I W L++DEA +K++ S +K L ++ + R+LL+GT
Sbjct: 734 KFHVLLTSYECINMDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLREYNIQYRVLLTGT 793
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN++ EL+ LL+F+ P F+ + F FS +I E + +LH +L P
Sbjct: 794 PLQNNLEELFHLLNFLAPDRFNQLESFTAEFS-EISK---------EDQIEKLHNLLGPH 843
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLY-SALKKKIKIEDLIHSSSGGSIQLSNN 324
MLRR+K DV + K E++V L++ QK Y + L + D ++ +GG+ Q+S
Sbjct: 844 MLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILTRNF---DALNVKNGGT-QMS-- 897
Query: 325 IASNLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++M+ +K CNHP LF + +AP
Sbjct: 898 ----LINIIMELKKCCNHPYLFMKACLEAP 923
Score = 192 (72.6 bits), Expect = 1.4e-65, Sum P(2) = 1.4e-65
Identities = 42/115 (36%), Positives = 70/115 (60%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M+ +K CNHP LF + +AP + ++E + L+ +AGK
Sbjct: 897 SLINIIMELKKCCNHPYLFMKACLEAPK--------LKNGMYEGS------ALIKNAGKF 942
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRD 556
+L +L++LK GHRVL++SQMT M+D+LE+F Y++ R+DGS +R+D
Sbjct: 943 VLLQKMLRKLKDGGHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQD 997
Score = 40 (19.1 bits), Expect = 5.6e-09, Sum P(3) = 5.6e-09
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 244 AENKTSIDERHLSRLHMILKPFMLR 268
+EN +E LSR H P+ LR
Sbjct: 464 SENPPIFEESTLSRHHSDHDPYKLR 488
Score = 38 (18.4 bits), Expect = 2.3e-49, Sum P(2) = 2.3e-49
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 501 LSVLDDLLKRLKASGHRV-LVYSQMTKMIDLLE 532
L+ LDDLL LK R+ SQ+ + + L+
Sbjct: 1645 LAQLDDLLSDLKTDVARLPATISQVRPVTERLQ 1677
Score = 37 (18.1 bits), Expect = 5.6e-09, Sum P(3) = 5.6e-09
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 172 LILDEAQAIKSSSSMRWK 189
+I + AQ I+ S RWK
Sbjct: 373 IIPEPAQRIEKILSWRWK 390
>UNIPROTKB|Q22516 [details] [associations]
symbol:chd-3 "Chromodomain-helicase-DNA-binding protein 3
homolog" species:6239 "Caenorhabditis elegans" [GO:0032508 "DNA
duplex unwinding" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003682 GO:GO:0006338 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0001709 GO:GO:0046580
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598 GO:GO:0000118
GeneTree:ENSGT00560000076896 EMBL:AF308444 EMBL:Z67884 EMBL:Z67881
PIR:T20160 RefSeq:NP_510140.1 UniGene:Cel.16950
ProteinModelPortal:Q22516 SMR:Q22516 STRING:Q22516 PaxDb:Q22516
EnsemblMetazoa:T14G8.1 GeneID:181421 KEGG:cel:CELE_T14G8.1
UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1 HOGENOM:HOG000231124
InParanoid:Q22516 OMA:INIIMEL NextBio:913870 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 Uniprot:Q22516
Length = 1787
Score = 522 (188.8 bits), Expect = 1.4e-65, Sum P(2) = 1.4e-65
Identities = 124/330 (37%), Positives = 193/330 (58%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
GNL YQL+G+NWL + + G + ILADEMGLGKTVQS+ FL + + GPFLI +P
Sbjct: 614 GNLHPYQLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAP 673
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWD--------MKNLHT-KDA 145
ST+ NW++E E + PDF VV Y G + R ++R+ F D + + T ++
Sbjct: 674 LSTIINWEREAELWCPDFYVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLENL 733
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
FHV++TSY+ + D + I W L++DEA +K++ S +K L ++ + R+LL+GT
Sbjct: 734 KFHVLLTSYECINMDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLREYNIQYRVLLTGT 793
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN++ EL+ LL+F+ P F+ + F FS +I E + +LH +L P
Sbjct: 794 PLQNNLEELFHLLNFLAPDRFNQLESFTAEFS-EISK---------EDQIEKLHNLLGPH 843
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLY-SALKKKIKIEDLIHSSSGGSIQLSNN 324
MLRR+K DV + K E++V L++ QK Y + L + D ++ +GG+ Q+S
Sbjct: 844 MLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILTRNF---DALNVKNGGT-QMS-- 897
Query: 325 IASNLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++M+ +K CNHP LF + +AP
Sbjct: 898 ----LINIIMELKKCCNHPYLFMKACLEAP 923
Score = 192 (72.6 bits), Expect = 1.4e-65, Sum P(2) = 1.4e-65
Identities = 42/115 (36%), Positives = 70/115 (60%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M+ +K CNHP LF + +AP + ++E + L+ +AGK
Sbjct: 897 SLINIIMELKKCCNHPYLFMKACLEAPK--------LKNGMYEGS------ALIKNAGKF 942
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRD 556
+L +L++LK GHRVL++SQMT M+D+LE+F Y++ R+DGS +R+D
Sbjct: 943 VLLQKMLRKLKDGGHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQD 997
Score = 40 (19.1 bits), Expect = 5.6e-09, Sum P(3) = 5.6e-09
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 244 AENKTSIDERHLSRLHMILKPFMLR 268
+EN +E LSR H P+ LR
Sbjct: 464 SENPPIFEESTLSRHHSDHDPYKLR 488
Score = 38 (18.4 bits), Expect = 2.3e-49, Sum P(2) = 2.3e-49
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 501 LSVLDDLLKRLKASGHRV-LVYSQMTKMIDLLE 532
L+ LDDLL LK R+ SQ+ + + L+
Sbjct: 1645 LAQLDDLLSDLKTDVARLPATISQVRPVTERLQ 1677
Score = 37 (18.1 bits), Expect = 5.6e-09, Sum P(3) = 5.6e-09
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 172 LILDEAQAIKSSSSMRWK 189
+I + AQ I+ S RWK
Sbjct: 373 IIPEPAQRIEKILSWRWK 390
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 548 (198.0 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
Identities = 121/317 (38%), Positives = 187/317 (58%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G ++ YQ++G+NWLA+L INGILADEMGLGKT+Q+I+ + ++ + P L+I P
Sbjct: 130 GEMRDYQVRGLNWLASLQHNKINGILADEMGLGKTLQTISMIGYMKHYKNKASPHLVIVP 189
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQER-KILRQFWDMKNLHTKDASFHVVITSYQLV 157
STL NW E +++ P V G R ++LR D+ L K F V T+Y+++
Sbjct: 190 KSTLQNWANEFKKWCPSINAVVLIGDEAARNQVLR---DVI-LPQK---FDVCCTTYEMM 242
Query: 158 VSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWAL 217
+ ++ W+Y+I+DEA IK+ S + + + NRLL++GTP+QN++ ELWAL
Sbjct: 243 LKVKTQLKKLNWRYIIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELWAL 302
Query: 218 LHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENE 277
L+F++P +F S D+F+ WFS D S T + + RLH +L+PF+LRRIK DVE
Sbjct: 303 LNFLLPDIFTSSDDFDSWFSNDAMS---GNTDL----VQRLHKVLQPFLLRRIKSDVEKS 355
Query: 278 LSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 337
L K E+ VY L+ Q+ Y+ K+ ++D+ + G ++ + LMN++M R
Sbjct: 356 LLPKKEVKVYVGLSKMQREWYT----KVLMKDIDIINGAGKVE-----KARLMNILMHLR 406
Query: 338 KVCNHPELFERRDAKAP 354
K NHP LF+ + P
Sbjct: 407 KCVNHPYLFDGAEPGPP 423
Score = 154 (59.3 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
Identities = 30/61 (49%), Positives = 44/61 (72%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV ++GK+ VLD LL + K G RVL++SQ ++M+DLLE+F +R Y + RLDGS+ +
Sbjct: 430 LVDNSGKMVVLDKLLMKFKEQGSRVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHED 489
Query: 554 R 554
R
Sbjct: 490 R 490
Score = 67 (28.6 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 418 KIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAP 468
K+ ++D+ + G ++ + LMN++M RK NHP LF+ + P
Sbjct: 378 KVLMKDIDIINGAGKVE-----KARLMNILMHLRKCVNHPYLFDGAEPGPP 423
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 579 (208.9 bits), Expect = 2.3e-65, Sum P(2) = 2.3e-65
Identities = 120/276 (43%), Positives = 181/276 (65%)
Query: 30 ERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDV 89
++P P + G ++ YQL+G+ WL +L+ G+ GILADEMGLGKTVQ+I+ + E ++V
Sbjct: 192 QQPAP-VTGGKMRKYQLEGLEWLKSLWMNGLCGILADEMGLGKTVQAISLIAFFKE-HNV 249
Query: 90 WGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ-FWDMKNLHTKDASFH 148
GPFLI +P ST+ NW E R+ P K V Y G+ ER LR+ F ++++ + D F
Sbjct: 250 SGPFLISAPLSTVSNWVDEFARWTPGIKTVLYHGTRDERAQLRKKFMNLRDQKSPD--FP 307
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
VV TSY++ ++D K+ + +W+Y+I+DE +K+ + K LL ++ NRLL++GTP+Q
Sbjct: 308 VVCTSYEICMNDRKFLAQYQWRYIIVDEGHRLKNMNCRLIKELLSYNSANRLLITGTPLQ 367
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAEN--KTSIDERH----LSRLHMIL 262
N++ ELW+LLHF++P +F+ + F WF D S +N +T + ER +S +H IL
Sbjct: 368 NNITELWSLLHFLLPEIFNDLNSFQNWF--DFSSVLDNNGQTDMIERRKRTLVSTMHSIL 425
Query: 263 KPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
KPF+LRR+K DVE+ L K E ++Y PLT QK LY
Sbjct: 426 KPFLLRRVKTDVESALPKKREYILYAPLTLEQKDLY 461
Score = 112 (44.5 bits), Expect = 2.3e-65, Sum P(2) = 2.3e-65
Identities = 39/153 (25%), Positives = 75/153 (49%)
Query: 404 FESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 463
F S + L++ + IE+ I S I+ +N I L + +K+ N P + R
Sbjct: 542 FNSKLRKLEQGLEEDLDIEESIDESEQEEIERANTI--KLAKREIAQKKMQN-PVMQARL 598
Query: 464 DAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQ 523
+P ++ P E+ + TLV +GK+ +LD L+ L GH++L++SQ
Sbjct: 599 ACNSP-----HNFYWPWA--EDPSSIDE-TLVTASGKMLLLDRLIPCLLNKGHKILIFSQ 650
Query: 524 MTKMIDLLEEFMVY-RKYRFMRLDGSSKISERR 555
+D+L+++ + R + R+DG+ ++R+
Sbjct: 651 FKTQLDILQDWATHLRSWNCCRIDGAISQADRQ 683
Score = 59 (25.8 bits), Expect = 8.7e-60, Sum P(2) = 8.7e-60
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 292 SRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIA--------SNLMNLVMQFRKVCNHP 343
S+ + L L++ + IE+ I S I+ +N I + N VMQ R CN P
Sbjct: 544 SKLRKLEQGLEEDLDIEESIDESEQEEIERANTIKLAKREIAQKKMQNPVMQARLACNSP 603
Query: 344 ELF 346
F
Sbjct: 604 HNF 606
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 536 (193.7 bits), Expect = 2.3e-65, Sum P(2) = 2.3e-65
Identities = 111/271 (40%), Positives = 170/271 (62%)
Query: 31 RPQPGLFRGN---LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY 87
+ QP G L+ YQL+G+NWLA+ + + + ILADEMGLGKT+Q+I+FL ++ +
Sbjct: 440 KKQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQH 499
Query: 88 DVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASF 147
++GPFLI+ P STL +WQ+E E + P+ VV Y G R +R++ + + TK F
Sbjct: 500 QLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREY-EWIHSQTKRLKF 558
Query: 148 HVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
+ +IT+Y++++ D I W +L +DEA +K+ S+ +K L+ F +RLL++GTP+
Sbjct: 559 NALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPL 618
Query: 208 QNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFML 267
QNS+ ELW+LLHFIMP F EF E F +D H + + E LH +L+PF+L
Sbjct: 619 QNSLKELWSLLHFIMPEKF----EFWEDFEED---HGKGR----ENGYQSLHKVLEPFLL 667
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
RR+KKDVE L K+E ++ +++ QK Y
Sbjct: 668 RRVKKDVEKSLPAKVEQILRVEMSALQKQYY 698
Score = 175 (66.7 bits), Expect = 2.3e-65, Sum P(2) = 2.3e-65
Identities = 44/110 (40%), Positives = 64/110 (58%)
Query: 441 SNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGK 500
S +N+VM+ +K CNH L K P E+ +E LL +L+ +GK
Sbjct: 718 SGFLNIVMELKKCCNHCYLI-----KPPEENERENG-------QEVLL----SLIRSSGK 761
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
L +LD LL RL+ G+RVL++SQM +M+D+L E++ + Y F RLDGS K
Sbjct: 762 LILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIK 811
Score = 138 (53.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 55/212 (25%), Positives = 98/212 (46%)
Query: 230 DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCP 289
++F W + E H + + E LH +L+PF+LRR+KKDVE L K+E ++
Sbjct: 635 EKFEFWEDFE-EDHGKGR----ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVE 689
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNH------P 343
+++ QK Y + + + L + G + S +N+VM+ +K CNH P
Sbjct: 690 MSALQKQYYKWILTR-NYKALAKGTRGST--------SGFLNIVMELKKCCNHCYLIKPP 740
Query: 344 ELFERRDAKAPLAMSCEDYHRLYRGRQME---REEGTILPEFPHVPRDPVILPQQPTYLP 400
E ER + + L +L ++ RE G + F + R IL + YL
Sbjct: 741 EENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAE---YLT 797
Query: 401 VCFFESTQNMVSPALKKKIKIEDLIHSSSGGS 432
+ + + + ++K +I+ + L H ++ GS
Sbjct: 798 IKHYPFQR--LDGSIKGEIRKQALDHFNADGS 827
Score = 41 (19.5 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 358 SCED-YHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYL 399
SC D +H + + E L + P V L +QPTYL
Sbjct: 408 SCIDSFHSRNNSKTIPTRECKALKQRPRF----VALKKQPTYL 446
Score = 38 (18.4 bits), Expect = 6.2e-51, Sum P(2) = 6.2e-51
Identities = 22/104 (21%), Positives = 43/104 (41%)
Query: 276 NELSDKIEIMVYCPLTSR--QKLLYSALKKKIKIEDLI--HSSSGGSIQLSNNIASNLMN 331
+ + K ++ +Y +T ++ + KKK+ ++ L+ + G L NN S N
Sbjct: 871 HRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENN--SGRSN 928
Query: 332 LVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREE 375
++P F + + A L ED + G + E +E
Sbjct: 929 ---------SNP--FNKEELTAILKFGAEDLFKELEGEESEPQE 961
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 538 (194.4 bits), Expect = 2.4e-65, Sum P(2) = 2.4e-65
Identities = 111/271 (40%), Positives = 170/271 (62%)
Query: 31 RPQPGLFRGN---LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY 87
+ QP G L+ YQL+G+NWLA+ + + + ILADEMGLGKT+Q+I+FL ++ +
Sbjct: 471 KKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQH 530
Query: 88 DVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASF 147
++GPFLI+ P STL +WQ+E E + P+ VV Y G R +R++ + + TK F
Sbjct: 531 QLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREY-EWIHSQTKRLKF 589
Query: 148 HVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
+ +IT+Y++++ D I W +L +DEA +K+ S+ +K L+ F +RLL++GTP+
Sbjct: 590 NALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPL 649
Query: 208 QNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFML 267
QNS+ ELW+LLHFIMP F EF E F +D H + + E LH +L+PF+L
Sbjct: 650 QNSLKELWSLLHFIMPEKF----EFWEDFEED---HGKGR----ENGYQSLHKVLEPFLL 698
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
RR+KKDVE L K+E ++ +++ QK Y
Sbjct: 699 RRVKKDVEKSLPAKVEQILRVEMSALQKQYY 729
Score = 174 (66.3 bits), Expect = 2.4e-65, Sum P(2) = 2.4e-65
Identities = 44/110 (40%), Positives = 64/110 (58%)
Query: 441 SNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGK 500
S +N+VM+ +K CNH L K P E+ +E LL +L+ +GK
Sbjct: 749 SGFLNIVMELKKCCNHCYLI-----KPPEENERENG-------QEILL----SLIRSSGK 792
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
L +LD LL RL+ G+RVL++SQM +M+D+L E++ + Y F RLDGS K
Sbjct: 793 LILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIK 842
Score = 137 (53.3 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 55/212 (25%), Positives = 98/212 (46%)
Query: 230 DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCP 289
++F W + E H + + E LH +L+PF+LRR+KKDVE L K+E ++
Sbjct: 666 EKFEFWEDFE-EDHGKGR----ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVE 720
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNH------P 343
+++ QK Y + + + L + G + S +N+VM+ +K CNH P
Sbjct: 721 MSALQKQYYKWILTR-NYKALAKGTRGST--------SGFLNIVMELKKCCNHCYLIKPP 771
Query: 344 ELFERRDAKAPLAMSCEDYHRLYRGRQME---REEGTILPEFPHVPRDPVILPQQPTYLP 400
E ER + + L +L ++ RE G + F + R IL + YL
Sbjct: 772 EENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAE---YLT 828
Query: 401 VCFFESTQNMVSPALKKKIKIEDLIHSSSGGS 432
+ + + + ++K +I+ + L H ++ GS
Sbjct: 829 IKHYPFQR--LDGSIKGEIRKQALDHFNADGS 858
Score = 38 (18.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 160 DFKYFN-------RIKWQYLILDEAQAIKSSSS 185
D +YFN + QY I++ A+K+S S
Sbjct: 359 DVEYFNCQQELASELNKQYQIVERVIAVKTSKS 391
Score = 37 (18.1 bits), Expect = 6.3e-51, Sum P(2) = 6.3e-51
Identities = 22/104 (21%), Positives = 43/104 (41%)
Query: 276 NELSDKIEIMVYCPLTSR--QKLLYSALKKKIKIEDLI--HSSSGGSIQLSNNIASNLMN 331
+ + K ++ +Y +T ++ + KKK+ ++ L+ + G L NN S N
Sbjct: 902 HRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTILENN--SGRSN 959
Query: 332 LVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREE 375
++P F + + A L ED + G + E +E
Sbjct: 960 ---------SNP--FNKEELTAILKFGAEDLFKELEGEESEPQE 992
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 538 (194.4 bits), Expect = 2.4e-65, Sum P(2) = 2.4e-65
Identities = 111/271 (40%), Positives = 170/271 (62%)
Query: 31 RPQPGLFRGN---LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY 87
+ QP G L+ YQL+G+NWLA+ + + + ILADEMGLGKT+Q+I+FL ++ +
Sbjct: 473 KKQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQH 532
Query: 88 DVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASF 147
++GPFLI+ P STL +WQ+E E + P+ VV Y G R +R++ + + TK F
Sbjct: 533 QLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREY-EWIHSQTKRLKF 591
Query: 148 HVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
+ +IT+Y++++ D I W +L +DEA +K+ S+ +K L+ F +RLL++GTP+
Sbjct: 592 NALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPL 651
Query: 208 QNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFML 267
QNS+ ELW+LLHFIMP F EF E F +D H + + E LH +L+PF+L
Sbjct: 652 QNSLKELWSLLHFIMPEKF----EFWEDFEED---HGKGR----ENGYQSLHKVLEPFLL 700
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
RR+KKDVE L K+E ++ +++ QK Y
Sbjct: 701 RRVKKDVEKSLPAKVEQILRVEMSALQKQYY 731
Score = 174 (66.3 bits), Expect = 2.4e-65, Sum P(2) = 2.4e-65
Identities = 44/110 (40%), Positives = 64/110 (58%)
Query: 441 SNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGK 500
S +N+VM+ +K CNH L K P E+ +E LL +L+ +GK
Sbjct: 751 SGFLNIVMELKKCCNHCYLI-----KPPEENERENG-------QEILL----SLIRSSGK 794
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
L +LD LL RL+ G+RVL++SQM +M+D+L E++ + Y F RLDGS K
Sbjct: 795 LILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIK 844
Score = 137 (53.3 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 55/212 (25%), Positives = 98/212 (46%)
Query: 230 DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCP 289
++F W + E H + + E LH +L+PF+LRR+KKDVE L K+E ++
Sbjct: 668 EKFEFWEDFE-EDHGKGR----ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVE 722
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNH------P 343
+++ QK Y + + + L + G + S +N+VM+ +K CNH P
Sbjct: 723 MSALQKQYYKWILTR-NYKALAKGTRGST--------SGFLNIVMELKKCCNHCYLIKPP 773
Query: 344 ELFERRDAKAPLAMSCEDYHRLYRGRQME---REEGTILPEFPHVPRDPVILPQQPTYLP 400
E ER + + L +L ++ RE G + F + R IL + YL
Sbjct: 774 EENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAE---YLT 830
Query: 401 VCFFESTQNMVSPALKKKIKIEDLIHSSSGGS 432
+ + + + ++K +I+ + L H ++ GS
Sbjct: 831 IKHYPFQR--LDGSIKGEIRKQALDHFNADGS 860
Score = 38 (18.4 bits), Expect = 5.0e-51, Sum P(2) = 5.0e-51
Identities = 22/104 (21%), Positives = 43/104 (41%)
Query: 276 NELSDKIEIMVYCPLTSR--QKLLYSALKKKIKIEDLI--HSSSGGSIQLSNNIASNLMN 331
+ + K ++ +Y +T ++ + KKK+ ++ L+ + G L NN S N
Sbjct: 904 HRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENN--SGRSN 961
Query: 332 LVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREE 375
++P F + + A L ED + G + E +E
Sbjct: 962 ---------SNP--FNKEELTAILKFGAEDLFKELEGEESEPQE 994
Score = 38 (18.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 160 DFKYFN-------RIKWQYLILDEAQAIKSSSS 185
D +YFN + QY I++ A+K+S S
Sbjct: 358 DVEYFNCQQELASELNKQYQIVERVIAVKTSKS 390
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 514 (186.0 bits), Expect = 2.4e-65, Sum P(2) = 2.4e-65
Identities = 112/307 (36%), Positives = 181/307 (58%)
Query: 18 FGSTTPSFSTEVERPQPGLFRGN-LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQS 76
F +T P + ++E+ QP +G ++ +QL G+NW+A L+ + NGILADEMGLGKTVQ+
Sbjct: 368 FYNTRPPYR-KLEK-QPSYIKGGEIRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQT 425
Query: 77 IAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWD 136
+ FL ++ + GPFLI+ P ST+ WQ+ + + PD + Y G+ + R +R++
Sbjct: 426 VCFLSYLVHSLKQHGPFLIVVPLSTVPAWQETLANWTPDLNSICYTGNTESRANIREYEF 485
Query: 137 MKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSC 196
+ +++ F++++T+Y+ ++ D + N I+WQYL +DEA +K+S S ++ L F
Sbjct: 486 YLSTNSRKLKFNILLTTYEYILKDKQELNNIRWQYLAIDEAHRLKNSESSLYETLSQFRT 545
Query: 197 RNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLS 256
NRLL++GTP+QN++ EL +L++F+MP F DE N F + +AE ER +
Sbjct: 546 ANRLLITGTPLQNNLKELASLVNFLMPGKFYIRDELN--FD---QPNAEQ-----ERDIR 595
Query: 257 RLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSG 316
L L+PF+LRR+KKDVE L K E ++ L+ Q Y + K H+
Sbjct: 596 DLQERLQPFILRRLKKDVEKSLPSKSERILRVELSDMQTEWYKNILTKNYRALTGHTDGR 655
Query: 317 GSIQLSN 323
G + L N
Sbjct: 656 GQLSLLN 662
Score = 194 (73.4 bits), Expect = 2.4e-65, Sum P(2) = 2.4e-65
Identities = 48/123 (39%), Positives = 75/123 (60%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N+V++ +KV NHP LF P A E +++ + + E L ++ ++GK+
Sbjct: 659 SLLNIVVELKKVSNHPYLF-------PGA--AEKWMMGRKMTREDTL---RGIIMNSGKM 706
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+LD LL+RLK GHRVL++SQM +M+++L E+M R Y + RLDG+ S RR D F
Sbjct: 707 VLLDKLLQRLKHDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHF 766
Query: 559 AVP 561
P
Sbjct: 767 NAP 769
Score = 126 (49.4 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 38/113 (33%), Positives = 59/113 (52%)
Query: 234 EWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSR 293
+++ +D E + + + ER + L L+PF+LRR+KKDVE L K E ++ L+
Sbjct: 574 KFYIRD-ELNFDQPNAEQERDIRDLQERLQPFILRRLKKDVEKSLPSKSERILRVELSDM 632
Query: 294 QKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELF 346
Q Y + K H+ G QLS L+N+V++ +KV NHP LF
Sbjct: 633 QTEWYKNILTKNYRALTGHTDGRG--QLS------LLNIVVELKKVSNHPYLF 677
Score = 39 (18.8 bits), Expect = 4.9e-49, Sum P(2) = 4.9e-49
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 361 DYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYL 399
+Y L RG +R +GTI V D P P ++
Sbjct: 738 EYMSL-RGYNYQRLDGTIPASVRRVSIDHFNAPDSPDFV 775
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 536 (193.7 bits), Expect = 3.1e-65, Sum P(2) = 3.1e-65
Identities = 111/271 (40%), Positives = 170/271 (62%)
Query: 31 RPQPGLFRGN---LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY 87
+ QP G L+ YQL+G+NWLA+ + + + ILADEMGLGKT+Q+I+FL ++ +
Sbjct: 474 KKQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQH 533
Query: 88 DVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASF 147
++GPFLI+ P STL +WQ+E E + P+ VV Y G R +R++ + + TK F
Sbjct: 534 QLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREY-EWIHSQTKRLKF 592
Query: 148 HVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
+ +IT+Y++++ D I W +L +DEA +K+ S+ +K L+ F +RLL++GTP+
Sbjct: 593 NALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPL 652
Query: 208 QNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFML 267
QNS+ ELW+LLHFIMP F EF E F +D H + + E LH +L+PF+L
Sbjct: 653 QNSLKELWSLLHFIMPEKF----EFWEDFEED---HGKGR----ENGYQSLHKVLEPFLL 701
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
RR+KKDVE L K+E ++ +++ QK Y
Sbjct: 702 RRVKKDVEKSLPAKVEQILRVEMSALQKQYY 732
Score = 175 (66.7 bits), Expect = 3.1e-65, Sum P(2) = 3.1e-65
Identities = 44/110 (40%), Positives = 64/110 (58%)
Query: 441 SNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGK 500
S +N+VM+ +K CNH L K P E+ +E LL +L+ +GK
Sbjct: 752 SGFLNIVMELKKCCNHCYLI-----KPPEENERENG-------QEVLL----SLIRSSGK 795
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
L +LD LL RL+ G+RVL++SQM +M+D+L E++ + Y F RLDGS K
Sbjct: 796 LILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIK 845
Score = 138 (53.6 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 55/212 (25%), Positives = 98/212 (46%)
Query: 230 DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCP 289
++F W + E H + + E LH +L+PF+LRR+KKDVE L K+E ++
Sbjct: 669 EKFEFWEDFE-EDHGKGR----ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVE 723
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNH------P 343
+++ QK Y + + + L + G + S +N+VM+ +K CNH P
Sbjct: 724 MSALQKQYYKWILTR-NYKALAKGTRGST--------SGFLNIVMELKKCCNHCYLIKPP 774
Query: 344 ELFERRDAKAPLAMSCEDYHRLYRGRQME---REEGTILPEFPHVPRDPVILPQQPTYLP 400
E ER + + L +L ++ RE G + F + R IL + YL
Sbjct: 775 EENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAE---YLT 831
Query: 401 VCFFESTQNMVSPALKKKIKIEDLIHSSSGGS 432
+ + + + ++K +I+ + L H ++ GS
Sbjct: 832 IKHYPFQR--LDGSIKGEIRKQALDHFNADGS 861
Score = 41 (19.5 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 358 SCED-YHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYL 399
SC D +H + + E L + P V L +QPTYL
Sbjct: 442 SCIDSFHSRNNSKTIPTRECKALKQRPRF----VALKKQPTYL 480
Score = 38 (18.4 bits), Expect = 8.1e-51, Sum P(2) = 8.1e-51
Identities = 22/104 (21%), Positives = 43/104 (41%)
Query: 276 NELSDKIEIMVYCPLTSR--QKLLYSALKKKIKIEDLI--HSSSGGSIQLSNNIASNLMN 331
+ + K ++ +Y +T ++ + KKK+ ++ L+ + G L NN S N
Sbjct: 905 HRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENN--SGRSN 962
Query: 332 LVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREE 375
++P F + + A L ED + G + E +E
Sbjct: 963 ---------SNP--FNKEELTAILKFGAEDLFKELEGEESEPQE 995
Score = 38 (18.4 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 160 DFKYFN-------RIKWQYLILDEAQAIKSSSS 185
D +YFN + QY I++ A+K+S S
Sbjct: 359 DVEYFNCQQELASELNKQYQIVERVIAVKTSKS 391
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 537 (194.1 bits), Expect = 3.1e-65, Sum P(2) = 3.1e-65
Identities = 111/271 (40%), Positives = 170/271 (62%)
Query: 31 RPQPGLFRGN---LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY 87
+ QP G L+ YQL+G+NWLA+ + + + ILADEMGLGKT+Q+I+FL ++ +
Sbjct: 478 KKQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQH 537
Query: 88 DVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASF 147
++GPFLI+ P STL +WQ+E E + P+ VV Y G R +R++ + + TK F
Sbjct: 538 QLYGPFLIVVPLSTLTSWQREFEIWAPEVNVVVYIGDLMSRNTIREY-EWIHSQTKRLKF 596
Query: 148 HVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
+ +IT+Y++++ D I W +L +DEA +K+ S+ +K L+ F +RLL++GTP+
Sbjct: 597 NALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPL 656
Query: 208 QNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFML 267
QNS+ ELW+LLHFIMP F EF E F +D H + + E LH +L+PF+L
Sbjct: 657 QNSLKELWSLLHFIMPEKF----EFWEDFEED---HGKGR----ENGYQSLHKVLEPFLL 705
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
RR+KKDVE L K+E ++ +++ QK Y
Sbjct: 706 RRVKKDVEKSLPAKVEQILRVEMSALQKQYY 736
Score = 174 (66.3 bits), Expect = 3.1e-65, Sum P(2) = 3.1e-65
Identities = 44/110 (40%), Positives = 65/110 (59%)
Query: 441 SNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGK 500
S +N+VM+ +K CNH L +AP ED + +E L +L+ +GK
Sbjct: 756 SGFLNIVMELKKCCNHCYLI-----RAP-----EDS--ERETGQEVLQ----SLIRSSGK 799
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
L +LD LL RL+ G+RVL++SQM +M+D+L E++ + Y F RLDGS K
Sbjct: 800 LILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIK 849
Score = 38 (18.4 bits), Expect = 6.4e-51, Sum P(2) = 6.4e-51
Identities = 22/104 (21%), Positives = 43/104 (41%)
Query: 276 NELSDKIEIMVYCPLTSR--QKLLYSALKKKIKIEDLI--HSSSGGSIQLSNNIASNLMN 331
+ + K ++ +Y +T ++ + KKK+ ++ L+ + G L NN S N
Sbjct: 909 HRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENN--SGRSN 966
Query: 332 LVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREE 375
++P F + + A L ED + G + E +E
Sbjct: 967 ---------SNP--FNKEELTAILKFGAEDLFKEIEGEESEPQE 999
Score = 38 (18.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 160 DFKYFN-------RIKWQYLILDEAQAIKSSSS 185
D +YFN + QY I++ A+K+S S
Sbjct: 366 DVEYFNCQQELASELNKQYQIVERVIAVKTSKS 398
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 536 (193.7 bits), Expect = 3.1e-65, Sum P(2) = 3.1e-65
Identities = 111/271 (40%), Positives = 170/271 (62%)
Query: 31 RPQPGLFRGN---LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY 87
+ QP G L+ YQL+G+NWLA+ + + + ILADEMGLGKT+Q+I+FL ++ +
Sbjct: 484 KKQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQH 543
Query: 88 DVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASF 147
++GPFLI+ P STL +WQ+E E + P+ VV Y G R +R++ + + TK F
Sbjct: 544 QLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREY-EWIHSQTKRLKF 602
Query: 148 HVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
+ +IT+Y++++ D I W +L +DEA +K+ S+ +K L+ F +RLL++GTP+
Sbjct: 603 NALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPL 662
Query: 208 QNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFML 267
QNS+ ELW+LLHFIMP F EF E F +D H + + E LH +L+PF+L
Sbjct: 663 QNSLKELWSLLHFIMPEKF----EFWEDFEED---HGKGR----ENGYQSLHKVLEPFLL 711
Query: 268 RRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
RR+KKDVE L K+E ++ +++ QK Y
Sbjct: 712 RRVKKDVEKSLPAKVEQILRVEMSALQKQYY 742
Score = 175 (66.7 bits), Expect = 3.1e-65, Sum P(2) = 3.1e-65
Identities = 44/110 (40%), Positives = 64/110 (58%)
Query: 441 SNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGK 500
S +N+VM+ +K CNH L K P E+ +E LL +L+ +GK
Sbjct: 762 SGFLNIVMELKKCCNHCYLI-----KPPEENERENG-------QEVLL----SLIRSSGK 805
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
L +LD LL RL+ G+RVL++SQM +M+D+L E++ + Y F RLDGS K
Sbjct: 806 LILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIK 855
Score = 138 (53.6 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 55/212 (25%), Positives = 98/212 (46%)
Query: 230 DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCP 289
++F W + E H + + E LH +L+PF+LRR+KKDVE L K+E ++
Sbjct: 679 EKFEFWEDFE-EDHGKGR----ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVE 733
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNH------P 343
+++ QK Y + + + L + G + S +N+VM+ +K CNH P
Sbjct: 734 MSALQKQYYKWILTR-NYKALAKGTRGST--------SGFLNIVMELKKCCNHCYLIKPP 784
Query: 344 ELFERRDAKAPLAMSCEDYHRLYRGRQME---REEGTILPEFPHVPRDPVILPQQPTYLP 400
E ER + + L +L ++ RE G + F + R IL + YL
Sbjct: 785 EENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAE---YLT 841
Query: 401 VCFFESTQNMVSPALKKKIKIEDLIHSSSGGS 432
+ + + + ++K +I+ + L H ++ GS
Sbjct: 842 IKHYPFQR--LDGSIKGEIRKQALDHFNADGS 871
Score = 41 (19.5 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 358 SCED-YHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYL 399
SC D +H + + E L + P V L +QPTYL
Sbjct: 452 SCIDSFHSRNNSKTIPTRECKALKQRPRF----VALKKQPTYL 490
Score = 38 (18.4 bits), Expect = 8.2e-51, Sum P(2) = 8.2e-51
Identities = 22/104 (21%), Positives = 43/104 (41%)
Query: 276 NELSDKIEIMVYCPLTSR--QKLLYSALKKKIKIEDLI--HSSSGGSIQLSNNIASNLMN 331
+ + K ++ +Y +T ++ + KKK+ ++ L+ + G L NN S N
Sbjct: 915 HRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENN--SGRSN 972
Query: 332 LVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREE 375
++P F + + A L ED + G + E +E
Sbjct: 973 ---------SNP--FNKEELTAILKFGAEDLFKELEGEESEPQE 1005
Score = 38 (18.4 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 160 DFKYFN-------RIKWQYLILDEAQAIKSSSS 185
D +YFN + QY I++ A+K+S S
Sbjct: 372 DVEYFNCQQELASELNKQYQIVERVIAVKTSKS 404
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 533 (192.7 bits), Expect = 3.8e-65, Sum P(2) = 3.8e-65
Identities = 108/283 (38%), Positives = 176/283 (62%)
Query: 41 LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS 100
L+ YQL G+NWLA+ + + + ILADEMGLGKT+Q+I+FL ++ + ++GPF+++ P S
Sbjct: 489 LRDYQLDGVNWLAHSWCRCNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFIVVVPLS 548
Query: 101 TLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD 160
TL +WQ+E + + PD VV Y G RK +R + + N TK F+ ++T+Y++++ D
Sbjct: 549 TLTSWQREFDTWAPDMNVVVYLGDVTSRKTIRDY-EWINPQTKRIKFNALLTTYEILLKD 607
Query: 161 FKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHF 220
I W +L +DEA +K+ S+ +K L+ F +RLL++GTP+QNS+ ELW+LLHF
Sbjct: 608 KGVLGNINWAFLGVDEAHRLKNDDSLLYKTLIDFRSNHRLLITGTPLQNSLKELWSLLHF 667
Query: 221 IMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSD 280
+M F+S ++F + H + + D + S LH +L+PF+LRR+KKDVE L
Sbjct: 668 LMSDKFESWEDFED-------EHGKGR---DNGYQS-LHKVLEPFLLRRVKKDVEKSLPA 716
Query: 281 KIEIMVYCPLTSRQKLLYS-ALKKKIK-IEDLIHSSSGGSIQL 321
K+E ++ ++++QK Y L + K + SS G + +
Sbjct: 717 KVEQILRVDMSAQQKQFYKWILTRNFKALSKGTRGSSSGFLNI 759
Score = 177 (67.4 bits), Expect = 3.8e-65, Sum P(2) = 3.8e-65
Identities = 45/111 (40%), Positives = 65/111 (58%)
Query: 440 ASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAG 499
+S +N+VM+ +K CNH L K P ED +A H +LV G
Sbjct: 753 SSGFLNIVMELKKCCNHAFLI-----KQP-----EDGE------NDAPQEHLQSLVRGGG 796
Query: 500 KLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
KL +LD LL RLK G+RVL++SQM +M+D+L +++ ++Y+F RLDGS K
Sbjct: 797 KLVLLDKLLTRLKDRGNRVLIFSQMVRMLDILADYLSMKRYQFQRLDGSIK 847
Score = 150 (57.9 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 39/119 (32%), Positives = 64/119 (53%)
Query: 230 DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCP 289
D+F W +D E E+ D + S LH +L+PF+LRR+KKDVE L K+E ++
Sbjct: 671 DKFESW--EDFED--EHGKGRDNGYQS-LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVD 725
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFER 348
++++QK Y + + + L + G S S +N+VM+ +K CNH L ++
Sbjct: 726 MSAQQKQFYKWILTR-NFKALSKGTRGSS--------SGFLNIVMELKKCCNHAFLIKQ 775
Score = 37 (18.1 bits), Expect = 2.1e-50, Sum P(2) = 2.1e-50
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 363 HRLYRGRQMER-EEG 376
HRLY+ Q +R +EG
Sbjct: 1541 HRLYKKAQKKRSQEG 1555
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 535 (193.4 bits), Expect = 4.0e-65, Sum P(2) = 4.0e-65
Identities = 112/272 (41%), Positives = 169/272 (62%)
Query: 31 RPQPGLFRGN---LKHYQLKGMNWLANLYDQGING-ILADEMGLGKTVQSIAFLCHIAET 86
+ QP G L+ YQL+G+NWLA+ + N ILADEMGLGKT+Q+I+FL ++
Sbjct: 459 KKQPAYLGGENLELRDYQLEGLNWLAHSWCNRSNSVILADEMGLGKTIQTISFLSYLFHQ 518
Query: 87 YDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDAS 146
+ ++GPFLI+ P STL +WQ+E E + P+ VV Y G R +R++ + + TK
Sbjct: 519 HQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREY-EWIHSQTKRLK 577
Query: 147 FHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTP 206
F+ +IT+Y++++ D I W +L +DEA +K+ S+ +K L+ F +RLL++GTP
Sbjct: 578 FNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTP 637
Query: 207 IQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFM 266
+QNS+ ELW+LLHFIMP F EF E F +D H + + E LH +L+PF+
Sbjct: 638 LQNSLKELWSLLHFIMPEKF----EFWEDFEED---HGKGR----ENGYQSLHKVLEPFL 686
Query: 267 LRRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
LRR+KKDVE L K+E ++ +++ QK Y
Sbjct: 687 LRRVKKDVEKSLPAKVEQILRVEMSALQKQYY 718
Score = 174 (66.3 bits), Expect = 4.0e-65, Sum P(2) = 4.0e-65
Identities = 44/110 (40%), Positives = 64/110 (58%)
Query: 441 SNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGK 500
S +N+VM+ +K CNH L K P E+ +E LL +L+ +GK
Sbjct: 738 SGFLNIVMELKKCCNHCYLI-----KPPEENERENG-------QEILL----SLIRSSGK 781
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
L +LD LL RL+ G+RVL++SQM +M+D+L E++ + Y F RLDGS K
Sbjct: 782 LILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIK 831
Score = 137 (53.3 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 55/212 (25%), Positives = 98/212 (46%)
Query: 230 DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCP 289
++F W + E H + + E LH +L+PF+LRR+KKDVE L K+E ++
Sbjct: 655 EKFEFWEDFE-EDHGKGR----ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVE 709
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNH------P 343
+++ QK Y + + + L + G + S +N+VM+ +K CNH P
Sbjct: 710 MSALQKQYYKWILTR-NYKALAKGTRGST--------SGFLNIVMELKKCCNHCYLIKPP 760
Query: 344 ELFERRDAKAPLAMSCEDYHRLYRGRQME---REEGTILPEFPHVPRDPVILPQQPTYLP 400
E ER + + L +L ++ RE G + F + R IL + YL
Sbjct: 761 EENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAE---YLT 817
Query: 401 VCFFESTQNMVSPALKKKIKIEDLIHSSSGGS 432
+ + + + ++K +I+ + L H ++ GS
Sbjct: 818 IKHYPFQR--LDGSIKGEIRKQALDHFNADGS 847
Score = 38 (18.4 bits), Expect = 8.2e-51, Sum P(2) = 8.2e-51
Identities = 22/104 (21%), Positives = 43/104 (41%)
Query: 276 NELSDKIEIMVYCPLTSR--QKLLYSALKKKIKIEDLI--HSSSGGSIQLSNNIASNLMN 331
+ + K ++ +Y +T ++ + KKK+ ++ L+ + G L NN S N
Sbjct: 891 HRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENN--SGRSN 948
Query: 332 LVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREE 375
++P F + + A L ED + G + E +E
Sbjct: 949 ---------SNP--FNKEELTAILKFGAEDLFKELEGEESEPQE 981
>WB|WBGene00007053 [details] [associations]
symbol:chd-7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR023780 KO:K14437 GeneTree:ENSGT00560000077077
EMBL:FO080504 EMBL:FO080107 RefSeq:NP_491426.2 PaxDb:O61845
EnsemblMetazoa:T04D1.4 GeneID:172079 KEGG:cel:CELE_T04D1.4
UCSC:T04D1.4 CTD:172079 WormBase:T04D1.4 HOGENOM:HOG000213105
InParanoid:O61845 OMA:LLAFRME NextBio:873933 Uniprot:O61845
Length = 2967
Score = 507 (183.5 bits), Expect = 6.3e-65, Sum P(2) = 6.3e-65
Identities = 130/359 (36%), Positives = 199/359 (55%)
Query: 7 AVEVEKQRSQQFGSTTPSFSTEVERPQPGLFR----------GN-LKHYQLKGMNWLANL 55
A +VE R +Q P+ E +RP+P ++ GN L+ YQ +G++WL
Sbjct: 1154 ADKVELWRERQV--IDPAKIREKQRPEPEEWKKMSTSKVWKNGNSLREYQFEGVDWLLYC 1211
Query: 56 YDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPD 115
Y N ILADEMGLGKTVQ+I FL I + Y + GPFL++ P ST+ NW +E E + D
Sbjct: 1212 YYNAQNCILADEMGLGKTVQTITFLSRIYD-YGIHGPFLVVVPLSTIQNWVREFETWT-D 1269
Query: 116 FKVVPYWGSPQERKILRQ---FWDMKNLHTKD-----ASFHVVITSYQLVVSDFKYFNRI 167
+ Y GS R++L+Q F+D ++ K+ +IT+++ VVSD ++ +I
Sbjct: 1270 MNAIVYHGSAYAREVLQQYEVFYDKRHCGAKNWKKNFVKIDALITTFETVVSDVEFLKKI 1329
Query: 168 KWQYLILDEAQAIKSSS-SMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMF 226
W+ ++DEA +K+ + + LL F +R+LL+GTP+QN++ EL++LL+F+ P F
Sbjct: 1330 PWRVCVIDEAHRLKNRNCKLLVNGLLAFRMEHRVLLTGTPLQNNIDELFSLLNFLHPQQF 1389
Query: 227 DSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMV 286
D+ F E F D++ + +L ILKP MLRR+K+DVE L K E ++
Sbjct: 1390 DNSATFLEQFGS---------CQTDDQ-VQKLQEILKPMMLRRLKEDVEKSLGPKEETII 1439
Query: 287 YCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPEL 345
L+ QK Y A+ ++ + H G S A +LMN++M+ RK CNHP L
Sbjct: 1440 EVQLSDMQKKFYRAILER----NFSHLCKGTS-------APSLMNVMMELRKCCNHPFL 1487
Score = 207 (77.9 bits), Expect = 6.3e-65, Sum P(2) = 6.3e-65
Identities = 43/109 (39%), Positives = 71/109 (65%)
Query: 440 ASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAG 499
A +LMN++M+ RK CNHP L + +A + D+ + ++E L HK L+ +G
Sbjct: 1468 APSLMNVMMELRKCCNHPFLINGAE-EAIM----NDFRLAHPDWDEETLAHK-ALIQASG 1521
Query: 500 KLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGS 548
K+ +++ LL +L+ GH+VL++SQM K++DLLEEF++ Y F R+DG+
Sbjct: 1522 KVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLISMSYPFERIDGN 1570
Score = 38 (18.4 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 380 PEFPHVPRDPVILPQQ 395
P+ PH + P +P Q
Sbjct: 536 PQHPHQHQQPASVPMQ 551
>RGD|1306794 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1306794 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006338 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GeneTree:ENSGT00560000076896 OrthoDB:EOG4PG601
IPI:IPI00767719 Ensembl:ENSRNOT00000019358 UCSC:RGD:1306794
Uniprot:D4AAG9
Length = 904
Score = 518 (187.4 bits), Expect = 6.4e-65, Sum P(2) = 6.4e-65
Identities = 110/302 (36%), Positives = 181/302 (59%)
Query: 10 VEKQRSQQFGSTTPSFSTEV--ERP-------QPGLFRGN----LKHYQLKGMNWLANLY 56
+++ S+ TTP +V +RP QP G+ L+ YQL G+NWLA+ +
Sbjct: 435 IDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSW 494
Query: 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDF 116
+G + ILADEMGLGKT+Q+I+FL ++ + ++GPFL++ P STL +WQ+E++ +
Sbjct: 495 CKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM 554
Query: 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDE 176
V Y G R ++R + + TK F++++T+Y++++ D + + W ++ +DE
Sbjct: 555 NAVVYLGDINSRNMIRTH-EWMHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDE 613
Query: 177 AQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWF 236
A +K+ S+ +K L+ F +RLL++GTP+QNS+ ELW+LLHFIMP F S ++F E
Sbjct: 614 AHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE-- 671
Query: 237 SKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKL 296
H + + E + LH L+PF+LRR+KKDVE L K+E ++ +++ QK
Sbjct: 672 -----EHGKGR----EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQ 722
Query: 297 LY 298
Y
Sbjct: 723 YY 724
Score = 176 (67.0 bits), Expect = 6.4e-65, Sum P(2) = 6.4e-65
Identities = 49/120 (40%), Positives = 70/120 (58%)
Query: 436 SNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLV 495
S S +N++M+ +K CNH L + D E Y K +EAL H L+
Sbjct: 739 SKGSTSGFLNIMMELKKCCNHCYLIKPPDNN-------EFY--NK---QEALQ-H---LI 782
Query: 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR 555
+GKL +LD LL RL+ G+RVL++SQM +M+D+L E++ YR++ F RLDGS I E R
Sbjct: 783 RSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGS--IGELR 840
Score = 134 (52.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 38/122 (31%), Positives = 62/122 (50%)
Query: 230 DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCP 289
++F+ W + E H + + E + LH L+PF+LRR+KKDVE L K+E ++
Sbjct: 661 EKFSSWEDFE-EEHGKGR----EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRME 715
Query: 290 LTSRQKLLYS-ALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFER 348
+++ QK Y L + K + S GS S +N++M+ +K CNH L +
Sbjct: 716 MSALQKQYYKWILTRNYKA---LSKGSKGS-------TSGFLNIMMELKKCCNHCYLIKP 765
Query: 349 RD 350
D
Sbjct: 766 PD 767
>UNIPROTKB|E2QUR1 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AAEX03009852
Ensembl:ENSCAFT00000009072 Uniprot:E2QUR1
Length = 2200
Score = 503 (182.1 bits), Expect = 7.4e-65, Sum P(2) = 7.4e-65
Identities = 125/323 (38%), Positives = 188/323 (58%)
Query: 38 RGNLKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVW--GPFL 94
R L+ YQL+G+NWL N Y++ N ILADEMGLGKT+QSIAFL E Y+V GPFL
Sbjct: 425 RNQLREYQLEGVNWLLFNWYNRQ-NCILADEMGLGKTIQSIAFL---QEVYNVGIHGPFL 480
Query: 95 IISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW----DMKNLHTKDA-SFHV 149
+I+P ST+ NW++E + + + Y GS R++++Q+ D + A F
Sbjct: 481 VIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDA 539
Query: 150 VITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQN 209
+IT++++++SD I+W+ +I+DEA +K+ + L +++LL+GTP+QN
Sbjct: 540 LITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQN 599
Query: 210 SMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRR 269
++ EL++LLHF+ PS F S EF + F D+ KT E + +L ILKP MLRR
Sbjct: 600 TVEELFSLLHFLEPSQFPSESEFLKDFG-DL------KT---EEQVQKLQAILKPMMLRR 649
Query: 270 IKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNL 329
+K+DVE L+ K E ++ LT+ QK Y A+ +K + S G N+ NL
Sbjct: 650 LKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK----NFSFLSKGAG---HTNMP-NL 701
Query: 330 MNLVMQFRKVCNHPELFERRDAK 352
+N +M+ RK CNHP L + K
Sbjct: 702 LNTMMELRKCCNHPYLINGAEEK 724
Score = 207 (77.9 bits), Expect = 7.4e-65, Sum P(2) = 7.4e-65
Identities = 46/123 (37%), Positives = 73/123 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + K ++IP F H +V AGKL
Sbjct: 700 NLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPH-DF------HLQAMVRSAGKL 752
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL +LKA GH+VL++SQM + +D+LE++++ R+Y + R+DG + + R+ D F
Sbjct: 753 VLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRF 812
Query: 559 AVP 561
+ P
Sbjct: 813 SKP 815
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 509 (184.2 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 125/329 (37%), Positives = 185/329 (56%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISP 98
G L YQL+G+NWL + QG + ILADEMGLGKTVQ+ FL + + GPFL+ +P
Sbjct: 734 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAP 793
Query: 99 ASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWDMKNLHTKDAS-------- 146
ST+ NW++E E + PD VV Y G R ++R+ F D K AS
Sbjct: 794 LSTIINWEREFEMWAPDMYVVTYVGDKDSRAVIRENEFTFEDNAIRGGKKASKMKKEAAV 853
Query: 147 -FHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
FHV++TSY+L+ D I W L++DEA +K++ S +++L + +++LLL+GT
Sbjct: 854 KFHVLLTSYELITIDQAILGSIDWACLVVDEAHRLKNNQSKFFRVLNNYPLQHKLLLTGT 913
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN++ EL+ LL+F+ P F++ + F E F+ DI E + +LH +L P
Sbjct: 914 PLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DIAK---------EDQIKKLHDMLGPH 963
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
MLRR+K DV + K E++V L+ QK Y + + E L ++ GG Q+S
Sbjct: 964 MLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKYILTR-NFEAL--NTRGGGNQVS--- 1017
Query: 326 ASNLMNLVMQFRKVCNHPELFERRDAKAP 354
L+N+VM +K CNHP LF +AP
Sbjct: 1018 ---LLNVVMDLKKCCNHPYLFPTAATEAP 1043
Score = 198 (74.8 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 48/124 (38%), Positives = 71/124 (57%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N+VM +K CNHP LF +AP +P +++ + L +GKL
Sbjct: 1017 SLLNVVMDLKKCCNHPYLFPTAATEAPK--------MPNGMYDGSALTKA------SGKL 1062
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +LK+LK GHRVL++SQMTKM+DLLE+F+ Y++ R+DG R+ D F
Sbjct: 1063 MLLFKMLKKLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGVTGGMRQEAIDRF 1122
Query: 559 AVPG 562
PG
Sbjct: 1123 NAPG 1126
>UNIPROTKB|Q9HCK8 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0070016 "armadillo repeat
domain binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IDA]
[GO:0030178 "negative regulation of Wnt receptor signaling pathway"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003678 "DNA helicase activity" evidence=IMP] [GO:0035064
"methylated histone residue binding" evidence=IDA] [GO:0045945
"positive regulation of transcription from RNA polymerase III
promoter" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IMP] [GO:0043234 "protein complex" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISS] [GO:0008013 "beta-catenin
binding" evidence=IDA] [GO:0071339 "MLL1 complex" evidence=IDA]
[GO:0042393 "histone binding" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 Pfam:PF00385
GO:GO:0005524 GO:GO:0045892 GO:GO:0043066 GO:GO:0003677
GO:GO:0001701 GO:GO:0045944 GO:GO:0006351 GO:GO:0035064
GO:GO:0008013 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0043044 GO:GO:0071339 GO:GO:0002039 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0008094 HOVERGEN:HBG107676 EMBL:CR749315
EMBL:AL834524 EMBL:AL135744 EMBL:AL161747 EMBL:CB043942
EMBL:AB046784 EMBL:AK131077 EMBL:BC011695 EMBL:BC025964
EMBL:BC036920 EMBL:BC063693 EMBL:BC073903 EMBL:BC098452
IPI:IPI00398992 IPI:IPI00719073 RefSeq:NP_001164100.1
RefSeq:NP_065971.2 UniGene:Hs.530698 PDB:2CKA PDB:2DL6 PDBsum:2CKA
PDBsum:2DL6 ProteinModelPortal:Q9HCK8 SMR:Q9HCK8 IntAct:Q9HCK8
STRING:Q9HCK8 PhosphoSite:Q9HCK8 DMDM:226706293 PaxDb:Q9HCK8
PRIDE:Q9HCK8 Ensembl:ENST00000399982 Ensembl:ENST00000430710
Ensembl:ENST00000557364 GeneID:57680 KEGG:hsa:57680 UCSC:uc001war.2
UCSC:uc001was.2 CTD:57680 GeneCards:GC14M021853 HGNC:HGNC:20153
HPA:HPA000849 MIM:610528 neXtProt:NX_Q9HCK8 PharmGKB:PA134957052
KO:K04494 OMA:FLAYMED EvolutionaryTrace:Q9HCK8 GenomeRNAi:57680
NextBio:64494 ArrayExpress:Q9HCK8 Bgee:Q9HCK8 CleanEx:HS_CHD8
Genevestigator:Q9HCK8 GermOnline:ENSG00000100888 Uniprot:Q9HCK8
Length = 2581
Score = 503 (182.1 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 125/323 (38%), Positives = 188/323 (58%)
Query: 38 RGNLKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVW--GPFL 94
R L+ YQL+G+NWL N Y++ N ILADEMGLGKT+QSIAFL E Y+V GPFL
Sbjct: 808 RNQLREYQLEGVNWLLFNWYNRQ-NCILADEMGLGKTIQSIAFL---QEVYNVGIHGPFL 863
Query: 95 IISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW----DMKNLHTKDA-SFHV 149
+I+P ST+ NW++E + + + Y GS R++++Q+ D + A F
Sbjct: 864 VIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDA 922
Query: 150 VITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQN 209
+IT++++++SD I+W+ +I+DEA +K+ + L +++LL+GTP+QN
Sbjct: 923 LITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQN 982
Query: 210 SMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRR 269
++ EL++LLHF+ PS F S EF + F D+ KT E + +L ILKP MLRR
Sbjct: 983 TVEELFSLLHFLEPSQFPSESEFLKDFG-DL------KT---EEQVQKLQAILKPMMLRR 1032
Query: 270 IKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNL 329
+K+DVE L+ K E ++ LT+ QK Y A+ +K + S G N+ NL
Sbjct: 1033 LKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK----NFSFLSKGAG---HTNMP-NL 1084
Query: 330 MNLVMQFRKVCNHPELFERRDAK 352
+N +M+ RK CNHP L + K
Sbjct: 1085 LNTMMELRKCCNHPYLINGAEEK 1107
Score = 207 (77.9 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 46/123 (37%), Positives = 73/123 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + K ++IP F H +V AGKL
Sbjct: 1083 NLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPH-DF------HLQAMVRSAGKL 1135
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL +LKA GH+VL++SQM + +D+LE++++ R+Y + R+DG + + R+ D F
Sbjct: 1136 VLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRF 1195
Query: 559 AVP 561
+ P
Sbjct: 1196 SKP 1198
>DICTYBASE|DDB_G0267556 [details] [associations]
symbol:DDB_G0267556 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0267556
GO:GO:0005524 GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_647125.1 ProteinModelPortal:Q55GQ9
EnsemblProtists:DDB0233433 GeneID:8615929 KEGG:ddi:DDB_G0267556
InParanoid:Q55GQ9 OMA:CANVVIF ProtClustDB:CLSZ2501118
Uniprot:Q55GQ9
Length = 1159
Score = 547 (197.6 bits), Expect = 1.9e-64, Sum P(3) = 1.9e-64
Identities = 118/300 (39%), Positives = 189/300 (63%)
Query: 10 VEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMG 69
+ ++ ++ + P+FS ++ QP + +++YQL G+NW+A LY + INGILADEMG
Sbjct: 512 INNKKDKKNNNNGPTFSHKLVA-QPKIINKVMRNYQLIGLNWMAVLYKEKINGILADEMG 570
Query: 70 LGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERK 129
LGKTVQ+I+ L HI E Y+ GP L++ PA+ L NW++E + + P +V Y+G+ +ER+
Sbjct: 571 LGKTVQTISLLAHIKEAYNDNGPHLVVVPATILANWEREFQTWCPSLSIVRYYGNLRERE 630
Query: 130 ILRQFWDMKNLHT-KDASFHVVITSYQLVVS--DFKYFNRIKWQYLILDEAQAIKSSSSM 186
LR +++K KD F+V++T+Y L+ + D + R + +LILDEAQ IK+S S
Sbjct: 631 ELR--YELKKKRPGKD--FNVILTTYNLLFANNDRGFLKRFDYSFLILDEAQNIKNSDSK 686
Query: 187 RWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAEN 246
R+K + +RLLL+GTP+QN++ ELW+LL+F+MP +F S + N ++ +E + ++
Sbjct: 687 RYKNIFKIGAHHRLLLTGTPLQNNLYELWSLLNFLMPHIFGSVKKDNYLLNQLLEYNGDD 746
Query: 247 KTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIK 306
S ++R+ IL PF+LRR+K V EL KIE + C L Q Y + ++ K
Sbjct: 747 CDSA----ITRMKKILSPFILRRLKSTVSKELKPKIEHVEICKLPKFQDETYKNIIERSK 802
Score = 112 (44.5 bits), Expect = 1.9e-64, Sum P(3) = 1.9e-64
Identities = 21/57 (36%), Positives = 39/57 (68%)
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM 557
L + + L K + + +VL++SQMT+++D+LE+ + Y F RLDGS+ ++ER+ +
Sbjct: 987 LKLKEILAKEIGVNKSKVLIFSQMTRVLDILEDVLDIFGYNFTRLDGSTPVNERQSI 1043
Score = 59 (25.8 bits), Expect = 1.9e-64, Sum P(3) = 1.9e-64
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 318 SIQLSNNIASN--LMNLVMQFRKVCNHPEL 345
SI+L +N + L N++MQ RK NHP L
Sbjct: 882 SIKLKSNGSGQFVLNNILMQLRKAANHPLL 911
Score = 59 (25.8 bits), Expect = 1.9e-64, Sum P(3) = 1.9e-64
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 432 SIQLSNNIASN--LMNLVMQFRKVCNHPEL 459
SI+L +N + L N++MQ RK NHP L
Sbjct: 882 SIKLKSNGSGQFVLNNILMQLRKAANHPLL 911
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 532 (192.3 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 106/258 (41%), Positives = 167/258 (64%)
Query: 41 LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS 100
L+ YQL+G+NWLA+ + + + ILADEMGLGKT+Q+I+FL ++ + ++GPFL++ P S
Sbjct: 486 LRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLVVVPLS 545
Query: 101 TLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD 160
TL +WQ+E E + P+ VV Y G R ++R++ + + +K F+ +IT+Y++++ D
Sbjct: 546 TLTSWQREFEVWAPEINVVVYIGDLMSRNMIREY-EWIHSQSKRLKFNALITTYEILLKD 604
Query: 161 FKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHF 220
I W +L +DEA +K+ S+ +K L+ F +RLL++GTP+QNS+ ELW+LLHF
Sbjct: 605 KAVLGSISWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHF 664
Query: 221 IMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSD 280
IMP F EF E F +D H + + E LH +L+PF+LRR+KKDVE L
Sbjct: 665 IMPEKF----EFWEDFEED---HGKGR----ENGYQSLHKVLEPFLLRRVKKDVEKSLPA 713
Query: 281 KIEIMVYCPLTSRQKLLY 298
K+E ++ +++ QK Y
Sbjct: 714 KVEQILRVEMSALQKQYY 731
Score = 169 (64.5 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 43/110 (39%), Positives = 63/110 (57%)
Query: 441 SNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGK 500
S +N+VM+ +K CNH L K P E+ + E L +L+ +GK
Sbjct: 751 SGFLNIVMELKKCCNHCYLI-----KPPEENERENGI-------ETLQ----SLIRSSGK 794
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
L +LD LL RL+ G+RVL++SQM +M+D+L E++ + Y F RLDGS K
Sbjct: 795 LILLDKLLTRLRDRGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIK 844
Score = 135 (52.6 bits), Expect = 2.7e-16, Sum P(3) = 2.7e-16
Identities = 36/114 (31%), Positives = 58/114 (50%)
Query: 230 DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCP 289
++F W + E H + + E LH +L+PF+LRR+KKDVE L K+E ++
Sbjct: 668 EKFEFWEDFE-EDHGKGR----ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVE 722
Query: 290 LTSRQKLLYS-ALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNH 342
+++ QK Y L + K + + GS S +N+VM+ +K CNH
Sbjct: 723 MSALQKQYYKWILTRNYKA---LSKGTRGS-------TSGFLNIVMELKKCCNH 766
Score = 38 (18.4 bits), Expect = 8.2e-52, Sum P(3) = 8.2e-52
Identities = 12/64 (18%), Positives = 29/64 (45%)
Query: 417 KKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDY 476
+++ I++++ + ++S + L++ QF+KV N + E D
Sbjct: 993 QEMDIDEILRLAETRENEVSTSATDELLS---QFKKVANFATMEEEETELDERPQKDWDD 1049
Query: 477 VIPK 480
+IP+
Sbjct: 1050 IIPE 1053
Score = 38 (18.4 bits), Expect = 8.2e-52, Sum P(3) = 8.2e-52
Identities = 22/104 (21%), Positives = 43/104 (41%)
Query: 276 NELSDKIEIMVYCPLTSR--QKLLYSALKKKIKIEDLI--HSSSGGSIQLSNNIASNLMN 331
+ + K ++ +Y +T ++ + KKK+ ++ L+ + G L NN S N
Sbjct: 904 HRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLDNN--SGRSN 961
Query: 332 LVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREE 375
++P F + + A L ED + G + E +E
Sbjct: 962 ---------SNP--FNKEELTAILKFGAEDLFKELEGEESEPQE 994
Score = 38 (18.4 bits), Expect = 2.7e-16, Sum P(3) = 2.7e-16
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 160 DFKYFN-------RIKWQYLILDEAQAIKSSSS 185
D +YFN + QY I++ A+K+S S
Sbjct: 362 DVEYFNCQQELASELNKQYQIVERVIAVKTSKS 394
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 501 (181.4 bits), Expect = 3.2e-64, Sum P(3) = 3.2e-64
Identities = 119/312 (38%), Positives = 182/312 (58%)
Query: 27 TEVERP---QPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHI 83
T V+ P Q GL L+ YQL+G+NWL + IL DEMGLGKT Q+IA L ++
Sbjct: 23 TRVQEPDLQQWGLTGIRLRSYQLEGVNWLVQCFHCQNGCILGDEMGLGKTCQTIALLIYL 82
Query: 84 AETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTK 143
+ GPFL++ P S L NW++EMERF P V Y G +ER L+Q D++ +
Sbjct: 83 VGRLNDEGPFLVLCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARLQQ--DLR----Q 136
Query: 144 DASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLS 203
++ FHV++T+Y++ + D + W L +DEA +K+ SS+ + L FS RLLL+
Sbjct: 137 ESGFHVLLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSAVFRLLLT 196
Query: 204 GTPIQNSMAELWALLHFIMPSMF--DSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMI 261
GTPIQNS+ EL++LL + P +F + ++F + + +DIE E+K++ S LH +
Sbjct: 197 GTPIQNSLRELYSLLCVVEPDLFCREQVEDFVQRY-QDIEK--ESKSA------SELHRL 247
Query: 262 LKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQL 321
L+PF+LRR+K V EL K E++VY +++ QK Y A+ +K D + + ++L
Sbjct: 248 LQPFLLRRVKAQVATELPKKTEVVVYHGMSALQKKYYKAIL--MKDLDAFENETAKKVKL 305
Query: 322 SNNIASNLMNLV 333
N I + L V
Sbjct: 306 QN-ILTQLRKCV 316
Score = 156 (60.0 bits), Expect = 3.2e-64, Sum P(3) = 3.2e-64
Identities = 31/61 (50%), Positives = 45/61 (73%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
L+ +GKL +LD LL L + GHRVL++SQMT M+D+L+++M YR Y + R+DGS + E
Sbjct: 336 LIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEE 395
Query: 554 R 554
R
Sbjct: 396 R 396
Score = 136 (52.9 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 34/112 (30%), Positives = 59/112 (52%)
Query: 238 KDIESHAENKTSIDE--RHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQK 295
+ +E + I++ + S LH +L+PF+LRR+K V EL K E++VY +++ QK
Sbjct: 222 EQVEDFVQRYQDIEKESKSASELHRLLQPFLLRRVKAQVATELPKKTEVVVYHGMSALQK 281
Query: 296 LLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
Y A+ +K D + + ++L N ++ Q RK +HP LF+
Sbjct: 282 KYYKAIL--MKDLDAFENETAKKVKLQN--------ILTQLRKCVDHPYLFD 323
Score = 51 (23.0 bits), Expect = 3.2e-64, Sum P(3) = 3.2e-64
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 443 LMNLVMQFRKVCNHPELFE 461
L N++ Q RK +HP LF+
Sbjct: 305 LQNILTQLRKCVDHPYLFD 323
Score = 42 (19.8 bits), Expect = 4.8e-51, Sum P(3) = 4.8e-51
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 360 EDYHRLYRGRQMEREEGTILPEFPHV 385
+DY YRG ER +G++ E H+
Sbjct: 374 QDYMD-YRGYSYERVDGSVRGEERHL 398
Score = 40 (19.1 bits), Expect = 9.7e-49, Sum P(2) = 9.7e-49
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 334 MQFRKVCNHPELFERRD-AKAPLAMSCEDYHRL 365
++ R NH LFE RD +K P + + +L
Sbjct: 568 LESRSYENHMYLFEGRDYSKEPSKEDRKSFEQL 600
Score = 39 (18.8 bits), Expect = 4.8e-51, Sum P(3) = 4.8e-51
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 448 MQFRKVCNHPELFERRD-AKAP 468
++ R NH LFE RD +K P
Sbjct: 568 LESRSYENHMYLFEGRDYSKEP 589
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 547 (197.6 bits), Expect = 3.5e-64, Sum P(2) = 3.5e-64
Identities = 119/292 (40%), Positives = 180/292 (61%)
Query: 33 QPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGP 92
QP G +K YQL+G+NWL LY INGILADEMGLGKT+Q+I+ LC++ ++
Sbjct: 314 QPMNINGTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISLLCYLRFNKNIKKK 373
Query: 93 FLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVIT 152
+II P STL NW +E++++ K Y+G+ +RK L +NL D F V++T
Sbjct: 374 SIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRKELN-----RNLLHSD--FDVLLT 426
Query: 153 SYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMA 212
+Y++V+ D I W +L++DEA IK+ S+ + NRLL++GTP+ N++
Sbjct: 427 TYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLK 486
Query: 213 ELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKK 272
ELW+LL+F+MP +FD+ +EF+ F+ S +NK S +++LH ILKPFMLRR+K
Sbjct: 487 ELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDNKQS---EIITQLHTILKPFMLRRLKV 543
Query: 273 DVENELSDKIEIMVYCPLTSRQKLLYS-ALKKKIKIEDLIHSSSGGSIQLSN 323
+VE L K EI ++ ++ QK LYS L K I D++++ +G Q+ N
Sbjct: 544 EVEQSLPPKREIYIFVGMSKLQKKLYSDILSKNI---DVLNAMTGSKNQMLN 592
Score = 371 (135.7 bits), Expect = 9.6e-42, Sum P(2) = 9.6e-42
Identities = 82/210 (39%), Positives = 129/210 (61%)
Query: 139 NLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRN 198
N + + F V++T+Y++V+ D I W +L++DEA IK+ S+ + N
Sbjct: 413 NRNLLHSDFDVLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSEN 472
Query: 199 RLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRL 258
RLL++GTP+ N++ ELW+LL+F+MP +FD+ +EF+ F+ S +NK S +++L
Sbjct: 473 RLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDNKQS---EIITQL 529
Query: 259 HMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYS-ALKKKIKIEDLIHSSSGG 317
H ILKPFMLRR+K +VE L K EI ++ ++ QK LYS L K I D++++ +G
Sbjct: 530 HTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKNI---DVLNAMTG- 585
Query: 318 SIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
S N ++N++MQ RK CNHP LF+
Sbjct: 586 ----SKN---QMLNILMQLRKCCNHPYLFD 608
Score = 150 (57.9 bits), Expect = 3.5e-64, Sum P(2) = 3.5e-64
Identities = 26/62 (41%), Positives = 47/62 (75%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
L+ +GK+S+LD LL RLK RVL++SQMT+++D+++++ ++ Y ++R+DGS+ E
Sbjct: 621 LIETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDE 680
Query: 554 RR 555
R+
Sbjct: 681 RQ 682
Score = 82 (33.9 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 393 PQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRK 452
P++ Y+ V + + + S L K I D++++ +G S N ++N++MQ RK
Sbjct: 551 PKREIYIFVGMSKLQKKLYSDILSKNI---DVLNAMTG-----SKN---QMLNILMQLRK 599
Query: 453 VCNHPELFE 461
CNHP LF+
Sbjct: 600 CCNHPYLFD 608
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 547 (197.6 bits), Expect = 3.5e-64, Sum P(2) = 3.5e-64
Identities = 119/292 (40%), Positives = 180/292 (61%)
Query: 33 QPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGP 92
QP G +K YQL+G+NWL LY INGILADEMGLGKT+Q+I+ LC++ ++
Sbjct: 314 QPMNINGTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISLLCYLRFNKNIKKK 373
Query: 93 FLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVIT 152
+II P STL NW +E++++ K Y+G+ +RK L +NL D F V++T
Sbjct: 374 SIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRKELN-----RNLLHSD--FDVLLT 426
Query: 153 SYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMA 212
+Y++V+ D I W +L++DEA IK+ S+ + NRLL++GTP+ N++
Sbjct: 427 TYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLK 486
Query: 213 ELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKK 272
ELW+LL+F+MP +FD+ +EF+ F+ S +NK S +++LH ILKPFMLRR+K
Sbjct: 487 ELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDNKQS---EIITQLHTILKPFMLRRLKV 543
Query: 273 DVENELSDKIEIMVYCPLTSRQKLLYS-ALKKKIKIEDLIHSSSGGSIQLSN 323
+VE L K EI ++ ++ QK LYS L K I D++++ +G Q+ N
Sbjct: 544 EVEQSLPPKREIYIFVGMSKLQKKLYSDILSKNI---DVLNAMTGSKNQMLN 592
Score = 371 (135.7 bits), Expect = 9.6e-42, Sum P(2) = 9.6e-42
Identities = 82/210 (39%), Positives = 129/210 (61%)
Query: 139 NLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRN 198
N + + F V++T+Y++V+ D I W +L++DEA IK+ S+ + N
Sbjct: 413 NRNLLHSDFDVLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSEN 472
Query: 199 RLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRL 258
RLL++GTP+ N++ ELW+LL+F+MP +FD+ +EF+ F+ S +NK S +++L
Sbjct: 473 RLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDNKQS---EIITQL 529
Query: 259 HMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYS-ALKKKIKIEDLIHSSSGG 317
H ILKPFMLRR+K +VE L K EI ++ ++ QK LYS L K I D++++ +G
Sbjct: 530 HTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKNI---DVLNAMTG- 585
Query: 318 SIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
S N ++N++MQ RK CNHP LF+
Sbjct: 586 ----SKN---QMLNILMQLRKCCNHPYLFD 608
Score = 150 (57.9 bits), Expect = 3.5e-64, Sum P(2) = 3.5e-64
Identities = 26/62 (41%), Positives = 47/62 (75%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
L+ +GK+S+LD LL RLK RVL++SQMT+++D+++++ ++ Y ++R+DGS+ E
Sbjct: 621 LIETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDE 680
Query: 554 RR 555
R+
Sbjct: 681 RQ 682
Score = 82 (33.9 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 393 PQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRK 452
P++ Y+ V + + + S L K I D++++ +G S N ++N++MQ RK
Sbjct: 551 PKREIYIFVGMSKLQKKLYSDILSKNI---DVLNAMTG-----SKN---QMLNILMQLRK 599
Query: 453 VCNHPELFE 461
CNHP LF+
Sbjct: 600 CCNHPYLFD 608
>RGD|1594200 [details] [associations]
symbol:LOC680231 "similar to chromodomain helicase DNA binding
protein 9" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:1594200 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 OrthoDB:EOG4548XQ IPI:IPI00957597
Ensembl:ENSRNOT00000018201 Uniprot:D3ZVE2
Length = 2881
Score = 504 (182.5 bits), Expect = 5.2e-64, Sum P(2) = 5.2e-64
Identities = 129/324 (39%), Positives = 190/324 (58%)
Query: 39 GN-LKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96
GN L+ YQL+G+NWL N Y++ N ILADEMGLGKT+QSI FL + T + GPFLII
Sbjct: 856 GNQLREYQLEGLNWLLFNWYNRR-NCILADEMGLGKTIQSITFLYEVLLT-GIRGPFLII 913
Query: 97 SPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWDMKNLHTKDA-SFHVVI 151
+P ST+ NW++E + D VV Y GS R++++Q F D + + A F +I
Sbjct: 914 APLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAII 972
Query: 152 TSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRN---RLLLSGTPIQ 208
T++++++ N I+W+ +I+DEA +K+ + KLL G N ++LL+GTP+Q
Sbjct: 973 TTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNC---KLLEGLKLMNLEHKVLLTGTPLQ 1029
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLR 268
N++ EL++LLHF+ P F S F + F D+ KT E + +L ILKP MLR
Sbjct: 1030 NTVEELFSLLHFLEPLRFPSESTFMQEFG-DL------KT---EEQVQKLQAILKPMMLR 1079
Query: 269 RIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASN 328
R+K+DVE L+ K E ++ LT+ QK Y A+ +K + S G N+ N
Sbjct: 1080 RLKEDVEKRLAPKEETIIEVELTNIQKKYYRAILEK----NFSFLSKGAG---QTNVP-N 1131
Query: 329 LMNLVMQFRKVCNHPELFERRDAK 352
L+N +M+ RK CNHP L + + K
Sbjct: 1132 LVNTMMELRKCCNHPYLIKGAEEK 1155
Score = 201 (75.8 bits), Expect = 5.2e-64, Sum P(2) = 5.2e-64
Identities = 43/123 (34%), Positives = 74/123 (60%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + + K + D P A H ++ AGKL
Sbjct: 1131 NLVNTMMELRKCCNHPYLIKGAEEK--IIGEFRDTYNPS-----ASDFHLQAMIQSAGKL 1183
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL ++KA GH+VL++SQM + +D+LE+++++++Y + R+DG + + R+ D F
Sbjct: 1184 VLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRF 1243
Query: 559 AVP 561
+ P
Sbjct: 1244 SKP 1246
Score = 42 (19.8 bits), Expect = 2.8e-47, Sum P(2) = 2.8e-47
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 326 ASNLMNLVMQFRKV----CNHPELFERR-----DAKAPLAMSCEDYHR-LYRGRQMEREE 375
AS + + RKV HP+LFER + P+ C + R L G +
Sbjct: 1922 ASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPIWWECGSHDRDLLIGAA---KH 1978
Query: 376 GTILPEFPHVPRDP 389
G ++ H+ RDP
Sbjct: 1979 GVSRTDY-HILRDP 1991
Score = 42 (19.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 226 FDSHDEFNEWFSKD------IESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELS 279
F+ H E N + S D +ESHAE +D L + +L F +D N +
Sbjct: 372 FNDHVETNGFSSLDENLLHQVESHAEPFAGLDPEDLLQ-EGLLPQFDESPFGQDNSNHVL 430
Query: 280 D 280
D
Sbjct: 431 D 431
Score = 39 (18.8 bits), Expect = 5.8e-47, Sum P(2) = 5.8e-47
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 440 ASNLMNLVMQFRKV----CNHPELFER 462
AS + + RKV HP+LFER
Sbjct: 1922 ASRTLYRIELLRKVREQALRHPQLFER 1948
Score = 39 (18.8 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 202 LSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIE 241
+ GTP+ MA+ L F SM + N+ F +E
Sbjct: 56 VQGTPVHQKMADFEQLNQF--DSM--KFHQVNQSFGSPVE 91
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 500 (181.1 bits), Expect = 5.5e-64, Sum P(3) = 5.5e-64
Identities = 114/292 (39%), Positives = 175/292 (59%)
Query: 35 GLFRGNLKHYQLKGMNWLANLYDQGING-ILADEMGLGKTVQSIAFLCHIAETYDVWGPF 93
GL L+ YQL+G+NWL + G NG IL DEMGLGKT Q+IA L ++ + GPF
Sbjct: 34 GLTGIRLRSYQLEGVNWLVQCF-HGQNGCILGDEMGLGKTCQTIALLIYLVGRLNDEGPF 92
Query: 94 LIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITS 153
LI+ P S L NW++EMERF P V Y G +ER +Q D++ +++ FHV++T+
Sbjct: 93 LILCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARRQQ--DLR----QESGFHVLLTT 146
Query: 154 YQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAE 213
Y++ + D + W L +DEA +K+ SS+ + L FS RLLL+GTPIQNS+ E
Sbjct: 147 YEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSVVFRLLLTGTPIQNSLQE 206
Query: 214 LWALLHFIMPSMF--DSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIK 271
L++LL + P +F + ++F + + +DIE E+K++ S LH +L+PF+LRR+K
Sbjct: 207 LYSLLSVVEPDLFCREQVEDFVQCY-QDIEK--ESKSA------SELHRLLRPFLLRRVK 257
Query: 272 KDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSN 323
V EL K E+++Y +++ QK Y A+ +K D + + ++L N
Sbjct: 258 AQVATELPKKTEVVIYHGMSALQKKYYKAIL--MKDLDAFENETAKKVKLQN 307
Score = 156 (60.0 bits), Expect = 5.5e-64, Sum P(3) = 5.5e-64
Identities = 31/61 (50%), Positives = 45/61 (73%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
L+ +GKL +LD LL L + GHRVL++SQMT M+D+L+++M YR Y + R+DGS + E
Sbjct: 336 LIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEE 395
Query: 554 R 554
R
Sbjct: 396 R 396
Score = 134 (52.2 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 31/97 (31%), Positives = 53/97 (54%)
Query: 251 DERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDL 310
+ + S LH +L+PF+LRR+K V EL K E+++Y +++ QK Y A+ +K D
Sbjct: 237 ESKSASELHRLLRPFLLRRVKAQVATELPKKTEVVIYHGMSALQKKYYKAIL--MKDLDA 294
Query: 311 IHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
+ + ++L N ++ Q RK +HP LF+
Sbjct: 295 FENETAKKVKLQN--------VLTQLRKCVDHPYLFD 323
Score = 50 (22.7 bits), Expect = 5.5e-64, Sum P(3) = 5.5e-64
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 443 LMNLVMQFRKVCNHPELFE 461
L N++ Q RK +HP LF+
Sbjct: 305 LQNVLTQLRKCVDHPYLFD 323
Score = 42 (19.8 bits), Expect = 1.0e-50, Sum P(3) = 1.0e-50
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 360 EDYHRLYRGRQMEREEGTILPEFPHV 385
+DY YRG ER +G++ E H+
Sbjct: 374 QDYMD-YRGYSYERVDGSVRGEERHL 398
Score = 38 (18.4 bits), Expect = 2.1e-48, Sum P(2) = 2.1e-48
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 341 NHPELFERRD-AKAPLAMSCEDYHRL 365
NH LFE RD +K P + + +L
Sbjct: 573 NHMYLFEGRDYSKEPSKEDRKSFEQL 598
Score = 37 (18.1 bits), Expect = 1.0e-50, Sum P(3) = 1.0e-50
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 455 NHPELFERRD-AKAP 468
NH LFE RD +K P
Sbjct: 573 NHMYLFEGRDYSKEP 587
Score = 37 (18.1 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 358 SCEDYHRLYRGRQMEREEGTILPEFP 383
S + HRL R + R + + E P
Sbjct: 240 SASELHRLLRPFLLRRVKAQVATELP 265
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 513 (185.6 bits), Expect = 9.3e-64, Sum P(2) = 9.3e-64
Identities = 120/351 (34%), Positives = 189/351 (53%)
Query: 5 RHAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGIL 64
R ++ Q S + S P F +P P + G L+ +QL G+NW+A L+ +G NGIL
Sbjct: 341 RENSKILPQYSSNYTSQRPRFEKLSVQP-PFIKGGELRDFQLTGINWMAFLWSKGDNGIL 399
Query: 65 ADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGS 124
ADEMGLGKTVQ++AF+ + GP +I+ P ST+ W E++ PD + Y G+
Sbjct: 400 ADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGN 459
Query: 125 PQERKILRQFWDMKNLHTKDAS---FHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIK 181
+ R +R++ N K F+V++T+Y+ ++ D IKWQ++ +DEA +K
Sbjct: 460 QKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLK 519
Query: 182 SSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIE 241
++ S ++ L F NR+L++GTP+QN++ EL AL++F+MP F E D E
Sbjct: 520 NAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEI------DFE 573
Query: 242 SHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSAL 301
+ E + E ++ LH ++PF+LRR+KKDVE L K E ++ L+ Q Y +
Sbjct: 574 NQDEEQ----EEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNI 629
Query: 302 KKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAK 352
K L + GG L N +MN + +K NHP LF+ + +
Sbjct: 630 LTK-NYSALTAGAKGGHFSLLN-----IMN---ELKKASNHPYLFDNAEER 671
Score = 181 (68.8 bits), Expect = 9.3e-64, Sum P(2) = 9.3e-64
Identities = 39/114 (34%), Positives = 67/114 (58%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++ + +K NHP LF+ + + + + K+ E L L+ +GK+
Sbjct: 647 SLLNIMNELKKASNHPYLFDNAEERV-----LQKFGDGKMTRENVLR----GLIMSSGKM 697
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR 555
+LD LL RLK GHRVL++SQM +M+D+L +++ + F RLDG+ ++RR
Sbjct: 698 VLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRR 751
>UNIPROTKB|F1MLB2 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:DAAA02028315 EMBL:DAAA02028312 EMBL:DAAA02028313
EMBL:DAAA02028314 IPI:IPI01017729 Ensembl:ENSBTAT00000027215
Uniprot:F1MLB2
Length = 2537
Score = 500 (181.1 bits), Expect = 9.8e-64, Sum P(2) = 9.8e-64
Identities = 124/316 (39%), Positives = 186/316 (58%)
Query: 38 RGNLKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVW--GPFL 94
R L+ YQL+G+NWL N Y++ N ILADEMGLGKT+QSIAFL E Y+V GPFL
Sbjct: 761 RNQLREYQLEGVNWLLFNWYNRQ-NCILADEMGLGKTIQSIAFL---QEVYNVGIHGPFL 816
Query: 95 IISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW----DMKNLHTKDA-SFHV 149
+I+P ST+ NW++E + + + Y GS R++++Q+ D + A F
Sbjct: 817 VIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDA 875
Query: 150 VITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQN 209
+IT++++++SD I+W+ +I+DEA +K+ + L +++LL+GTP+QN
Sbjct: 876 LITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQN 935
Query: 210 SMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRR 269
++ EL++LLHF+ PS F S EF + F D+ KT E + +L ILKP MLRR
Sbjct: 936 TVEELFSLLHFLEPSQFPSESEFLKDFG-DL------KT---EEQVQKLQAILKPMMLRR 985
Query: 270 IKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNL 329
+K+DVE L+ K E ++ LT+ QK Y A+ +K + S G N+ NL
Sbjct: 986 LKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK----NFSFLSKGAG---HTNMP-NL 1037
Query: 330 MNLVMQFRKVCNHPEL 345
+N +M+ RK CNHP L
Sbjct: 1038 LNTMMELRKCCNHPYL 1053
Score = 201 (75.8 bits), Expect = 9.8e-64, Sum P(2) = 9.8e-64
Identities = 47/124 (37%), Positives = 74/124 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCED-YVIPKLVFEEALLCHKLTLVYDAGK 500
NL+N +M+ RK CNHP L + L E ++IP F H +V AGK
Sbjct: 1036 NLLNTMMELRKCCNHPYLINAGAEEKILTEFREACHIIPH-DF------HLQAMVRSAGK 1088
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DM 557
L ++D LL +LKA GH+VL++SQM + +D+LE++++ R+Y + R+DG + + R+ D
Sbjct: 1089 LVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDR 1148
Query: 558 FAVP 561
F+ P
Sbjct: 1149 FSKP 1152
>UNIPROTKB|F1S8J5 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:FP340603 Ensembl:ENSSSCT00000002379
ArrayExpress:F1S8J5 Uniprot:F1S8J5
Length = 2569
Score = 500 (181.1 bits), Expect = 1.0e-63, Sum P(2) = 1.0e-63
Identities = 124/316 (39%), Positives = 186/316 (58%)
Query: 38 RGNLKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVW--GPFL 94
R L+ YQL+G+NWL N Y++ N ILADEMGLGKT+QSIAFL E Y+V GPFL
Sbjct: 808 RNQLREYQLEGVNWLLFNWYNRQ-NCILADEMGLGKTIQSIAFL---QEVYNVGIHGPFL 863
Query: 95 IISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW----DMKNLHTKDA-SFHV 149
+I+P ST+ NW++E + + + Y GS R++++Q+ D + A F
Sbjct: 864 VIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDA 922
Query: 150 VITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQN 209
+IT++++++SD I+W+ +I+DEA +K+ + L +++LL+GTP+QN
Sbjct: 923 LITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQN 982
Query: 210 SMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRR 269
++ EL++LLHF+ PS F S EF + F D+ KT E + +L ILKP MLRR
Sbjct: 983 TVEELFSLLHFLEPSQFPSESEFLKDFG-DL------KT---EEQVQKLQAILKPMMLRR 1032
Query: 270 IKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNL 329
+K+DVE L+ K E ++ LT+ QK Y A+ +K + S G N+ NL
Sbjct: 1033 LKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK----NFSFLSKGAG---HTNMP-NL 1084
Query: 330 MNLVMQFRKVCNHPEL 345
+N +M+ RK CNHP L
Sbjct: 1085 LNTMMELRKCCNHPYL 1100
Score = 201 (75.8 bits), Expect = 1.0e-63, Sum P(2) = 1.0e-63
Identities = 47/124 (37%), Positives = 74/124 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCED-YVIPKLVFEEALLCHKLTLVYDAGK 500
NL+N +M+ RK CNHP L + L E ++IP F H +V AGK
Sbjct: 1083 NLLNTMMELRKCCNHPYLINAGAEEKILTEFREACHIIPH-DF------HLQAMVRSAGK 1135
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DM 557
L ++D LL +LKA GH+VL++SQM + +D+LE++++ R+Y + R+DG + + R+ D
Sbjct: 1136 LVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDR 1195
Query: 558 FAVP 561
F+ P
Sbjct: 1196 FSKP 1199
>UNIPROTKB|E2QUS7 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:FLAYMED EMBL:AAEX03009852
Ensembl:ENSCAFT00000009065 Uniprot:E2QUS7
Length = 2586
Score = 500 (181.1 bits), Expect = 1.0e-63, Sum P(2) = 1.0e-63
Identities = 124/316 (39%), Positives = 186/316 (58%)
Query: 38 RGNLKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVW--GPFL 94
R L+ YQL+G+NWL N Y++ N ILADEMGLGKT+QSIAFL E Y+V GPFL
Sbjct: 808 RNQLREYQLEGVNWLLFNWYNRQ-NCILADEMGLGKTIQSIAFL---QEVYNVGIHGPFL 863
Query: 95 IISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW----DMKNLHTKDA-SFHV 149
+I+P ST+ NW++E + + + Y GS R++++Q+ D + A F
Sbjct: 864 VIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDA 922
Query: 150 VITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQN 209
+IT++++++SD I+W+ +I+DEA +K+ + L +++LL+GTP+QN
Sbjct: 923 LITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQN 982
Query: 210 SMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRR 269
++ EL++LLHF+ PS F S EF + F D+ KT E + +L ILKP MLRR
Sbjct: 983 TVEELFSLLHFLEPSQFPSESEFLKDFG-DL------KT---EEQVQKLQAILKPMMLRR 1032
Query: 270 IKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNL 329
+K+DVE L+ K E ++ LT+ QK Y A+ +K + S G N+ NL
Sbjct: 1033 LKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK----NFSFLSKGAG---HTNMP-NL 1084
Query: 330 MNLVMQFRKVCNHPEL 345
+N +M+ RK CNHP L
Sbjct: 1085 LNTMMELRKCCNHPYL 1100
Score = 201 (75.8 bits), Expect = 1.0e-63, Sum P(2) = 1.0e-63
Identities = 47/124 (37%), Positives = 74/124 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCED-YVIPKLVFEEALLCHKLTLVYDAGK 500
NL+N +M+ RK CNHP L + L E ++IP F H +V AGK
Sbjct: 1083 NLLNTMMELRKCCNHPYLINAGAEEKILTEFREACHIIPH-DF------HLQAMVRSAGK 1135
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DM 557
L ++D LL +LKA GH+VL++SQM + +D+LE++++ R+Y + R+DG + + R+ D
Sbjct: 1136 LVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDR 1195
Query: 558 FAVP 561
F+ P
Sbjct: 1196 FSKP 1199
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 497 (180.0 bits), Expect = 1.4e-63, Sum P(2) = 1.4e-63
Identities = 121/318 (38%), Positives = 183/318 (57%)
Query: 41 LKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99
L+ YQL+G+NWL N Y+ N ILADEMGLGKT+QSI FL I + GPFL+I+P
Sbjct: 154 LREYQLEGVNWLLFNWYNTR-NCILADEMGLGKTIQSITFLYEIY-LKGIHGPFLVIAPL 211
Query: 100 STLHNWQQEMERFVPDFKVVPYWGSPQERKILR----QFWDMKNLHTKDA-SFHVVITSY 154
ST+ NW++E + + VV Y GS R+ ++ F D + K + FH +IT++
Sbjct: 212 STIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTF 270
Query: 155 QLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAEL 214
+++++D I W+ +++DEA +K+ + + L +++LL+GTP+QN++ EL
Sbjct: 271 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 330
Query: 215 WALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDV 274
++LLHF+ P F S F + F D+ KT E + +L ILKP MLRR+K+DV
Sbjct: 331 FSLLHFLEPGRFPSETTFMQEFG-DL------KT---EEQVQKLQAILKPMMLRRLKEDV 380
Query: 275 ENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVM 334
E L+ K E ++ LT+ QK Y A+ +K + S GG N+ NL+N +M
Sbjct: 381 EKNLAPKEETIIEVELTNIQKKYYRAILEK----NFAFLSKGGG---QANVP-NLLNTMM 432
Query: 335 QFRKVCNHPELFERRDAK 352
+ RK CNHP L + K
Sbjct: 433 ELRKCCNHPYLINGAEEK 450
Score = 194 (73.4 bits), Expect = 1.4e-63, Sum P(2) = 1.4e-63
Identities = 45/123 (36%), Positives = 72/123 (58%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + K L E + F+ ++ AGKL
Sbjct: 426 NLLNTMMELRKCCNHPYLINGAEEKI-LEEFKETHNADSPDFQLQ------AMIQAAGKL 478
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL +LKA GHRVL++SQM + +D+LE++++ R+Y + R+DG + + R+ D F
Sbjct: 479 VLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRF 538
Query: 559 AVP 561
+ P
Sbjct: 539 SRP 541
Score = 38 (18.4 bits), Expect = 3.6e-47, Sum P(2) = 3.6e-47
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 537 YRKYRFMRLDGSSKISERRDMFAVPGILTHQ 567
Y KY MR D + ER M I Q
Sbjct: 992 YEKYNSMRADSTLCFLERVGMPDAKAIAAEQ 1022
Score = 38 (18.4 bits), Expect = 3.6e-47, Sum P(2) = 3.6e-47
Identities = 16/64 (25%), Positives = 26/64 (40%)
Query: 403 FFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRK----VCNHPE 458
+F NM + +K +D S ++ AS + + RK V +HP+
Sbjct: 1202 YFNGFVNMCRRVCRMPVKPDDEPPDLSTMIEPITEERASRTLYRIELLRKIREQVLHHPQ 1261
Query: 459 LFER 462
L ER
Sbjct: 1262 LGER 1265
>FB|FBgn0262519 [details] [associations]
symbol:Mi-2 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=IDA;NAS] [GO:0005634
"nucleus" evidence=ISS;IDA;NAS] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0016581 "NuRD complex" evidence=ISS;TAS]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS;IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0042766 "nucleosome mobilization" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007517 "muscle
organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0031491 "nucleosome binding"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 EMBL:AE014296 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0000122
GO:GO:0048813 GO:GO:0007517 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0005700 GO:GO:0042766 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF119716 EMBL:AY113368 RefSeq:NP_001163476.1
RefSeq:NP_649154.2 UniGene:Dm.28317 ProteinModelPortal:O97159
SMR:O97159 DIP:DIP-22862N IntAct:O97159 MINT:MINT-864813
STRING:O97159 PaxDb:O97159 EnsemblMetazoa:FBtr0074919
EnsemblMetazoa:FBtr0302046 GeneID:40170 KEGG:dme:Dmel_CG8103
CTD:40170 FlyBase:FBgn0262519 InParanoid:O97159 OrthoDB:EOG4T76J4
ChiTaRS:Mi-2 GenomeRNAi:40170 NextBio:817384 Bgee:O97159
GermOnline:CG8103 Uniprot:O97159
Length = 1982
Score = 505 (182.8 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
Identities = 123/339 (36%), Positives = 184/339 (54%)
Query: 33 QPGLFRGN---LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDV 89
QP G L YQ++G+NWL + QGI+ ILADEMGLGKT+Q++ FL + +
Sbjct: 719 QPAFLEGTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHC 778
Query: 90 WGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWD-------MK 138
GPFL+ P STL NW++E E + PDF + Y G R ++R+ F + +
Sbjct: 779 RGPFLVAVPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVS 838
Query: 139 NLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRN 198
L T F+V++TSY+L+ D I W L++DEA +KS+ S +++L ++
Sbjct: 839 RLRTTQYKFNVLLTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIAY 898
Query: 199 RLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSID-ERHLSR 257
+LLL+GTP+QN++ EL+ LL+F+ S D+FN D+++ + E + R
Sbjct: 899 KLLLTGTPLQNNLEELFHLLNFL------SRDKFN-----DLQAFQGEFADVSKEEQVKR 947
Query: 258 LHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGG 317
LH +L P MLRR+K DV + K E +V L++ QK Y + K E L S GG
Sbjct: 948 LHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQKKFYKFILTK-NYEALNSKSGGG 1006
Query: 318 SIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLA 356
S +L+N++M +K CNHP LF +A A
Sbjct: 1007 SC--------SLINIMMDLKKCCNHPYLFPSAAEEATTA 1037
Score = 191 (72.3 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
Identities = 52/134 (38%), Positives = 76/134 (56%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M +K CNHP LF +A A ++E + LT AGKL
Sbjct: 1009 SLINIMMDLKKCCNHPYLFPSAAEEATTAAGG--------LYE----INSLTKA--AGKL 1054
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +LK+LKA HRVL++SQMTKM+D+LE+F+ +Y++ R+DG + R+ D F
Sbjct: 1055 VLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRF 1114
Query: 559 AVPGILTHQSVGLL 572
PG Q V LL
Sbjct: 1115 NAPG--AQQFVFLL 1126
Score = 37 (18.1 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 292 SRQKLLYSALKKKIKIED 309
SR K K K+K+ED
Sbjct: 675 SRSKKSKKGRKSKLKVED 692
>UNIPROTKB|E1BS48 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AADN02038292
EMBL:AADN02038293 EMBL:AADN02038294 EMBL:AADN02038295
EMBL:AADN02038296 EMBL:AADN02038297 EMBL:AADN02038298
IPI:IPI00579055 Ensembl:ENSGALT00000005902 Uniprot:E1BS48
Length = 2614
Score = 498 (180.4 bits), Expect = 1.7e-63, Sum P(2) = 1.7e-63
Identities = 133/357 (37%), Positives = 203/357 (56%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFR----------GN-LKHYQLKGMNWLA-NLYDQGINGI 63
+Q ++ P S ++RP P ++ GN L+ YQL+G+NWL N Y++ N I
Sbjct: 822 EQLQASRPD-SRRLDRPPPNSWKKIEHSREYKNGNQLREYQLEGLNWLLFNWYNRR-NCI 879
Query: 64 LADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWG 123
LADEMGLGKT+QSI FL I + + GPFLII+P ST+ NW++E + D VV Y G
Sbjct: 880 LADEMGLGKTIQSITFLYEILLS-GIRGPFLIIAPLSTITNWEREFRTWT-DLNVVVYHG 937
Query: 124 SPQERKILRQ----FWDMKNLHTKDA-SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQ 178
S R++++Q F D + + F +IT++++++ N I+W+ +I+DEA
Sbjct: 938 SMISRQMIQQYEMYFRDSQGRIVRGTYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAH 997
Query: 179 AIKSSSSMRWKLLLGFSCRN---RLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEW 235
+K+ + KLL G N ++LL+GTP+QN++ EL++LLHF+ P F + F +
Sbjct: 998 RLKNRNC---KLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPAESTFMQE 1054
Query: 236 FSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQK 295
F D+ KT E + +L ILKP MLRR+K+DVE +L+ K E ++ LT+ QK
Sbjct: 1055 FG-DL------KT---EEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQK 1104
Query: 296 LLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAK 352
Y A+ +K + S G N+ NL+N +M+ RK CNHP L + + K
Sbjct: 1105 KYYRAILEK----NFAFLSKGAG---QANVP-NLVNTMMELRKCCNHPYLIKGAEEK 1153
Score = 201 (75.8 bits), Expect = 1.7e-63, Sum P(2) = 1.7e-63
Identities = 44/123 (35%), Positives = 74/123 (60%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + + K L E Y F H ++ AGKL
Sbjct: 1129 NLVNTMMELRKCCNHPYLIKGAEEKI-LGEFKETYNPTAPDF------HLQAMIQSAGKL 1181
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL ++KA GH+VL++SQM + +D+LE+++++++Y + R+DG + + R+ D F
Sbjct: 1182 VLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRF 1241
Query: 559 AVP 561
+ P
Sbjct: 1242 SKP 1244
Score = 40 (19.1 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 326 ASNLMNLVMQFRKV----CNHPELFERR-----DAKAPLAMSCEDYHR-LYRGRQMEREE 375
AS + + RKV HP+LFER + P+ C + R L G +
Sbjct: 1919 ASRTLYRIELLRKVREQALRHPQLFERLKLCQPNPDLPVWWECGTHDRDLLIGAA---KH 1975
Query: 376 GTILPEFPHVPRDP 389
G ++ H+ RDP
Sbjct: 1976 GVSRTDY-HILRDP 1988
Score = 39 (18.8 bits), Expect = 1.9e-46, Sum P(2) = 1.9e-46
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 440 ASNLMNLVMQFRKV----CNHPELFER 462
AS + + RKV HP+LFER
Sbjct: 1919 ASRTLYRIELLRKVREQALRHPQLFER 1945
>UNIPROTKB|E1C188 [details] [associations]
symbol:Gga.53842 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00717
GO:GO:0005524 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR017877
PROSITE:PS50090 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GeneTree:ENSGT00530000063427 EMBL:AADN02034826 IPI:IPI00592312
Ensembl:ENSGALT00000003680 ArrayExpress:E1C188 Uniprot:E1C188
Length = 3044
Score = 528 (190.9 bits), Expect = 2.2e-63, Sum P(3) = 2.2e-63
Identities = 106/273 (38%), Positives = 166/273 (60%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
+T V+ P L G L+ YQ G++WLA LY + +NGILADE GLGKTVQ IAF H+A
Sbjct: 1076 TTAVKYNTPSLLYGPLREYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLAC 1135
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP L++ + + W+ E++R+ P K++ Y+GS +E + RQ W N
Sbjct: 1136 NEGNWGPHLVVVRSCNILKWELELKRWCPGLKILLYFGSQRELRAKRQEWSEPN------ 1189
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
SF+V ITSY+ + F +++W+YLI+DE Q IK+ + W+ L ++RLLL T
Sbjct: 1190 SFNVCITSYKQLFKGHPAFMKMRWKYLIVDEMQQIKNMTEKHWEALFSLRSQHRLLLIDT 1249
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+ N++ ELW ++HF++P + + +F +++ E + + RLH +++PF
Sbjct: 1250 PLHNTLMELWTMVHFLIPGISRPYLDF------PVKAPNEENQDYCHKLVIRLHRMIQPF 1303
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
+LRR K+DVE +L+ K E ++ C L+SRQK +Y
Sbjct: 1304 ILRRSKRDVEKQLTKKYEHVLKCRLSSRQKAMY 1336
Score = 328 (120.5 bits), Expect = 1.0e-33, Sum P(2) = 1.0e-33
Identities = 75/227 (33%), Positives = 127/227 (55%)
Query: 129 KILRQFWDMKNLHTKDA------SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKS 182
KIL F + L K SF+V ITSY+ + F +++W+YLI+DE Q IK+
Sbjct: 1167 KILLYFGSQRELRAKRQEWSEPNSFNVCITSYKQLFKGHPAFMKMRWKYLIVDEMQQIKN 1226
Query: 183 SSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIES 242
+ W+ L ++RLLL TP+ N++ ELW ++HF++P + + +F +++
Sbjct: 1227 MTEKHWEALFSLRSQHRLLLIDTPLHNTLMELWTMVHFLIPGISRPYLDF------PVKA 1280
Query: 243 HAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALK 302
E + + RLH +++PF+LRR K+DVE +L+ K E ++ C L+SRQK +Y
Sbjct: 1281 PNEENQDYCHKLVIRLHRMIQPFILRRSKRDVEKQLTKKYEHVLKCRLSSRQKAMY---- 1336
Query: 303 KKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 349
ED+I G L + ++++++MQ +++CNHP+L R
Sbjct: 1337 -----EDVI-LQPGTQEALKSGHFISVLHVLMQLQRICNHPDLINPR 1377
Score = 130 (50.8 bits), Expect = 2.2e-63, Sum P(3) = 2.2e-63
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 492 LTLV-YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
L LV YD+GKL L LL +LK+ G RVL+ SQM M+D+LE F+ + F+R+D +
Sbjct: 1814 LRLVQYDSGKLEALAVLLLKLKSEGRRVLILSQMILMLDILELFLNFHFLTFVRIDEYAN 1873
Query: 551 ISERRDM 557
+R+++
Sbjct: 1874 HEQRQEL 1880
Score = 71 (30.1 bits), Expect = 2.2e-63, Sum P(3) = 2.2e-63
Identities = 17/67 (25%), Positives = 33/67 (49%)
Query: 416 KKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCED 475
++K ED+I G L + ++++++MQ +++CNHP+L R + +
Sbjct: 1331 RQKAMYEDVI-LQPGTQEALKSGHFISVLHVLMQLQRICNHPDLINPRLSSTSYVSETLE 1389
Query: 476 YVIPKLV 482
Y LV
Sbjct: 1390 YRTASLV 1396
>GENEDB_PFALCIPARUM|PFB0730w [details] [associations]
symbol:PFB0730w "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0006338 GO:GO:0016514 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS
PIR:F71607 RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 559 (201.8 bits), Expect = 2.4e-63, Sum P(2) = 2.4e-63
Identities = 124/320 (38%), Positives = 190/320 (59%)
Query: 33 QPG-LFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE-TYDVW 90
QP L G L YQL+G+ WL +LY+ ++GILADEMGLGKT+Q+I+ ++ E ++
Sbjct: 875 QPSILIGGELMKYQLEGLEWLVSLYNNNLHGILADEMGLGKTIQTISLFAYLKEFKNNIN 934
Query: 91 GPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVV 150
LII P STL NW E R+ P V+ Y G+ ERK + + K L + +F +
Sbjct: 935 VKNLIIVPLSTLPNWISEFNRWCPSLNVITYRGNKLERKHIAK----KLL---EQTFDIC 987
Query: 151 ITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNS 210
IT++ LV+ + + +I W Y+++DE +K++ S L F + R+LL+GTP+QN+
Sbjct: 988 ITTFDLVIKEKSFLMKISWNYIVVDEGHRMKNNKSRFHVFLSEFKSKYRILLTGTPLQNN 1047
Query: 211 MAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH----LSRLHMILKPFM 266
++ELW+LL+F++P +F S +F +WF K + + + I E ++RLH +L PFM
Sbjct: 1048 LSELWSLLNFLLPKIFSSCVDFEKWFVKSLHNEKDVYEHITEEEQLLIINRLHSVLLPFM 1107
Query: 267 LRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIA 326
LRR+KKDV L K E ++ L+ QK+LY ++ K + + H+ GSI + I
Sbjct: 1108 LRRVKKDVLKSLPKKYEYNIHIELSLYQKILYKQIQTK-GFKQVNHN---GSI--TTKI- 1160
Query: 327 SNLMNLVMQFRKVCNHPELF 346
N+VMQ RK+ NHP LF
Sbjct: 1161 --FQNIVMQLRKIVNHPYLF 1178
Score = 135 (52.6 bits), Expect = 2.4e-63, Sum P(2) = 2.4e-63
Identities = 24/58 (41%), Positives = 43/58 (74%)
Query: 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR 555
+GK VLD +L +L H+VL++SQMTK++++L +++ +R Y++ RLDG+ + ER+
Sbjct: 1192 SGKFEVLDRMLPKLLKFKHKVLIFSQMTKLMNILCDYLEFRGYKYHRLDGNIGLQERK 1249
Score = 52 (23.4 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 30/142 (21%), Positives = 64/142 (45%)
Query: 243 HAENKTSIDERHLSRLHMILKPFM--LRRIKKDVENELSDKIEIM-----VYCPLTS-RQ 294
H + K++ +H+ R + + F +++I+ + EL + I+ + ++ ++S +Q
Sbjct: 617 HKKRKSTSKSKHIFRSNEVSIHFNDDIKKIEHVAKKELQEYIKQIHNKSKIHNNISSLKQ 676
Query: 295 KLLYSALKKKIKIED---LIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDA 351
+L S K+ K + L+ + ++ N+ N M + Q RK+ E ER
Sbjct: 677 YMLISNWKELTKHNNYMTLLSEEKKRNSKILANLCYNQMKAIDQKRKIILEKE--ERERM 734
Query: 352 KAPLAMSCEDYHRLYRGRQMER 373
K E Y +L + + +R
Sbjct: 735 KLLKDNDIEAYMKLIKTAKNKR 756
>UNIPROTKB|O96239 [details] [associations]
symbol:PFB0730w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006338
GO:GO:0016514 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS PIR:F71607
RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 559 (201.8 bits), Expect = 2.4e-63, Sum P(2) = 2.4e-63
Identities = 124/320 (38%), Positives = 190/320 (59%)
Query: 33 QPG-LFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE-TYDVW 90
QP L G L YQL+G+ WL +LY+ ++GILADEMGLGKT+Q+I+ ++ E ++
Sbjct: 875 QPSILIGGELMKYQLEGLEWLVSLYNNNLHGILADEMGLGKTIQTISLFAYLKEFKNNIN 934
Query: 91 GPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVV 150
LII P STL NW E R+ P V+ Y G+ ERK + + K L + +F +
Sbjct: 935 VKNLIIVPLSTLPNWISEFNRWCPSLNVITYRGNKLERKHIAK----KLL---EQTFDIC 987
Query: 151 ITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNS 210
IT++ LV+ + + +I W Y+++DE +K++ S L F + R+LL+GTP+QN+
Sbjct: 988 ITTFDLVIKEKSFLMKISWNYIVVDEGHRMKNNKSRFHVFLSEFKSKYRILLTGTPLQNN 1047
Query: 211 MAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH----LSRLHMILKPFM 266
++ELW+LL+F++P +F S +F +WF K + + + I E ++RLH +L PFM
Sbjct: 1048 LSELWSLLNFLLPKIFSSCVDFEKWFVKSLHNEKDVYEHITEEEQLLIINRLHSVLLPFM 1107
Query: 267 LRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIA 326
LRR+KKDV L K E ++ L+ QK+LY ++ K + + H+ GSI + I
Sbjct: 1108 LRRVKKDVLKSLPKKYEYNIHIELSLYQKILYKQIQTK-GFKQVNHN---GSI--TTKI- 1160
Query: 327 SNLMNLVMQFRKVCNHPELF 346
N+VMQ RK+ NHP LF
Sbjct: 1161 --FQNIVMQLRKIVNHPYLF 1178
Score = 135 (52.6 bits), Expect = 2.4e-63, Sum P(2) = 2.4e-63
Identities = 24/58 (41%), Positives = 43/58 (74%)
Query: 498 AGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR 555
+GK VLD +L +L H+VL++SQMTK++++L +++ +R Y++ RLDG+ + ER+
Sbjct: 1192 SGKFEVLDRMLPKLLKFKHKVLIFSQMTKLMNILCDYLEFRGYKYHRLDGNIGLQERK 1249
Score = 52 (23.4 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 30/142 (21%), Positives = 64/142 (45%)
Query: 243 HAENKTSIDERHLSRLHMILKPFM--LRRIKKDVENELSDKIEIM-----VYCPLTS-RQ 294
H + K++ +H+ R + + F +++I+ + EL + I+ + ++ ++S +Q
Sbjct: 617 HKKRKSTSKSKHIFRSNEVSIHFNDDIKKIEHVAKKELQEYIKQIHNKSKIHNNISSLKQ 676
Query: 295 KLLYSALKKKIKIED---LIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDA 351
+L S K+ K + L+ + ++ N+ N M + Q RK+ E ER
Sbjct: 677 YMLISNWKELTKHNNYMTLLSEEKKRNSKILANLCYNQMKAIDQKRKIILEKE--ERERM 734
Query: 352 KAPLAMSCEDYHRLYRGRQMER 373
K E Y +L + + +R
Sbjct: 735 KLLKDNDIEAYMKLIKTAKNKR 756
>UNIPROTKB|E1C186 [details] [associations]
symbol:Gga.53842 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 PROSITE:PS51194 SMART:SM00717
GO:GO:0005524 GO:GO:0003677 GO:GO:0016607 GO:GO:0003682
GO:GO:0035267 GO:GO:0043968 GO:GO:0043967 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR017877
PROSITE:PS50090 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:MQKQKLQ EMBL:AADN02034826
IPI:IPI00587546 Ensembl:ENSGALT00000003682 ArrayExpress:E1C186
Uniprot:E1C186
Length = 3118
Score = 528 (190.9 bits), Expect = 2.4e-63, Sum P(3) = 2.4e-63
Identities = 106/273 (38%), Positives = 166/273 (60%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
+T V+ P L G L+ YQ G++WLA LY + +NGILADE GLGKTVQ IAF H+A
Sbjct: 1076 TTAVKYNTPSLLYGPLREYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLAC 1135
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP L++ + + W+ E++R+ P K++ Y+GS +E + RQ W N
Sbjct: 1136 NEGNWGPHLVVVRSCNILKWELELKRWCPGLKILLYFGSQRELRAKRQEWSEPN------ 1189
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
SF+V ITSY+ + F +++W+YLI+DE Q IK+ + W+ L ++RLLL T
Sbjct: 1190 SFNVCITSYKQLFKGHPAFMKMRWKYLIVDEMQQIKNMTEKHWEALFSLRSQHRLLLIDT 1249
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+ N++ ELW ++HF++P + + +F +++ E + + RLH +++PF
Sbjct: 1250 PLHNTLMELWTMVHFLIPGISRPYLDF------PVKAPNEENQDYCHKLVIRLHRMIQPF 1303
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
+LRR K+DVE +L+ K E ++ C L+SRQK +Y
Sbjct: 1304 ILRRSKRDVEKQLTKKYEHVLKCRLSSRQKAMY 1336
Score = 328 (120.5 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 75/227 (33%), Positives = 127/227 (55%)
Query: 129 KILRQFWDMKNLHTKDA------SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKS 182
KIL F + L K SF+V ITSY+ + F +++W+YLI+DE Q IK+
Sbjct: 1167 KILLYFGSQRELRAKRQEWSEPNSFNVCITSYKQLFKGHPAFMKMRWKYLIVDEMQQIKN 1226
Query: 183 SSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIES 242
+ W+ L ++RLLL TP+ N++ ELW ++HF++P + + +F +++
Sbjct: 1227 MTEKHWEALFSLRSQHRLLLIDTPLHNTLMELWTMVHFLIPGISRPYLDF------PVKA 1280
Query: 243 HAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALK 302
E + + RLH +++PF+LRR K+DVE +L+ K E ++ C L+SRQK +Y
Sbjct: 1281 PNEENQDYCHKLVIRLHRMIQPFILRRSKRDVEKQLTKKYEHVLKCRLSSRQKAMY---- 1336
Query: 303 KKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 349
ED+I G L + ++++++MQ +++CNHP+L R
Sbjct: 1337 -----EDVI-LQPGTQEALKSGHFISVLHVLMQLQRICNHPDLINPR 1377
Score = 130 (50.8 bits), Expect = 2.4e-63, Sum P(3) = 2.4e-63
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 492 LTLV-YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
L LV YD+GKL L LL +LK+ G RVL+ SQM M+D+LE F+ + F+R+D +
Sbjct: 1893 LRLVQYDSGKLEALAVLLLKLKSEGRRVLILSQMILMLDILELFLNFHFLTFVRIDEYAN 1952
Query: 551 ISERRDM 557
+R+++
Sbjct: 1953 HEQRQEL 1959
Score = 71 (30.1 bits), Expect = 2.4e-63, Sum P(3) = 2.4e-63
Identities = 17/67 (25%), Positives = 33/67 (49%)
Query: 416 KKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCED 475
++K ED+I G L + ++++++MQ +++CNHP+L R + +
Sbjct: 1331 RQKAMYEDVI-LQPGTQEALKSGHFISVLHVLMQLQRICNHPDLINPRLSSTSYVSETLE 1389
Query: 476 YVIPKLV 482
Y LV
Sbjct: 1390 YRTASLV 1396
>UNIPROTKB|F1PWD8 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 OMA:TFGVIFD EMBL:AAEX03015818
EMBL:AAEX03015819 EMBL:AAEX03015820 Ensembl:ENSCAFT00000011497
GeneTree:ENSGT00700000105087 Uniprot:F1PWD8
Length = 2994
Score = 503 (182.1 bits), Expect = 3.1e-63, Sum P(2) = 3.1e-63
Identities = 122/318 (38%), Positives = 184/318 (57%)
Query: 41 LKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99
L+ YQL+G+NWL N Y+ N ILADEMGLGKT+QSI FL I + GPFL+I+P
Sbjct: 967 LREYQLEGVNWLLFNWYNMR-NCILADEMGLGKTIQSITFLYEIY-LKGIHGPFLVIAPL 1024
Query: 100 STLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWDMKNLHTKDA-SFHVVITSY 154
ST+ NW++E + + VV Y GS R+ ++ F D + K + FH +IT++
Sbjct: 1025 STIPNWEREFRTWT-ELNVVVYHGSQASRRTIQSYEMYFKDPQGRVIKGSYKFHAIITTF 1083
Query: 155 QLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAEL 214
+++++D I W+ +++DEA +K+ + + L +++LL+GTP+QN++ EL
Sbjct: 1084 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 1143
Query: 215 WALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDV 274
++LLHF+ PS F S F + F D+ KT E + +L ILKP MLRR+K+DV
Sbjct: 1144 FSLLHFLEPSRFPSETTFMQEFG-DL------KT---EEQVQKLQAILKPMMLRRLKEDV 1193
Query: 275 ENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVM 334
E L+ K E ++ LT+ QK Y A+ +K + S GG N+ NL+N +M
Sbjct: 1194 EKNLAPKEETIIEVELTNIQKKYYRAILEK----NFTFLSKGGG---QANVP-NLLNTMM 1245
Query: 335 QFRKVCNHPELFERRDAK 352
+ RK CNHP L + K
Sbjct: 1246 ELRKCCNHPYLINGAEEK 1263
Score = 195 (73.7 bits), Expect = 3.1e-63, Sum P(2) = 3.1e-63
Identities = 45/123 (36%), Positives = 72/123 (58%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + K L E + F+ ++ AGKL
Sbjct: 1239 NLLNTMMELRKCCNHPYLINGAEEKI-LEEFKETHNADSPDFQLQ------AMIQAAGKL 1291
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL +LKA GHRVL++SQM + +D+LE++++ R+Y + R+DG + + R+ D F
Sbjct: 1292 VLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRF 1351
Query: 559 AVP 561
+ P
Sbjct: 1352 SKP 1354
>MGI|MGI:2444748 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=ISO] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0001701 "in utero embryonic development" evidence=ISO;IMP]
[GO:0003007 "heart morphogenesis" evidence=ISO;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=ISO] [GO:0007512 "adult heart
development" evidence=IMP] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007626 "locomotory behavior"
evidence=IMP] [GO:0007628 "adult walking behavior" evidence=IMP]
[GO:0008015 "blood circulation" evidence=IMP] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0021545 "cranial nerve
development" evidence=ISO] [GO:0030217 "T cell differentiation"
evidence=ISO] [GO:0030540 "female genitalia development"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0042471 "ear morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis"
evidence=ISO;IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043584 "nose development" evidence=ISO;IMP]
[GO:0048752 "semicircular canal morphogenesis" evidence=IGI]
[GO:0048806 "genitalia development" evidence=ISO] [GO:0048844
"artery morphogenesis" evidence=IGI] [GO:0050890 "cognition"
evidence=ISO] [GO:0060021 "palate development" evidence=ISO;IMP]
[GO:0060041 "retina development in camera-type eye" evidence=ISO]
[GO:0060123 "regulation of growth hormone secretion" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060324 "face
development" evidence=ISO] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 MGI:MGI:2444748 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008015 GO:GO:0003007 GO:GO:0050890 GO:GO:0001701
GO:GO:0040018 GO:GO:0007417 GO:GO:0006351 GO:GO:0003682
GO:GO:0016568 GO:GO:0043010 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0030540 GO:GO:0007628 GO:GO:0030217
GO:GO:0048752 InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
CTD:55636 HOGENOM:HOG000246942 KO:K14437 OrthoDB:EOG4MCWZD
OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584 GO:GO:0060123 EMBL:AK042727
EMBL:AK171051 EMBL:AK171857 EMBL:AK172025 EMBL:AL732627
EMBL:AL805903 EMBL:BC034239 IPI:IPI00345676 IPI:IPI00666779
IPI:IPI00849588 RefSeq:NP_001074886.1 UniGene:Mm.138792
ProteinModelPortal:A2AJK6 SMR:A2AJK6 IntAct:A2AJK6 STRING:A2AJK6
PhosphoSite:A2AJK6 PaxDb:A2AJK6 PRIDE:A2AJK6
Ensembl:ENSMUST00000039267 Ensembl:ENSMUST00000051558
Ensembl:ENSMUST00000127476 GeneID:320790 KEGG:mmu:320790
UCSC:uc008rxy.1 UCSC:uc008rya.1 GeneTree:ENSGT00560000077077
InParanoid:A2AJK6 NextBio:397435 Bgee:A2AJK6 CleanEx:MM_CHD7
Genevestigator:A2AJK6 Uniprot:A2AJK6
Length = 2986
Score = 502 (181.8 bits), Expect = 4.0e-63, Sum P(2) = 4.0e-63
Identities = 122/318 (38%), Positives = 184/318 (57%)
Query: 41 LKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99
L+ YQL+G+NWL N Y+ N ILADEMGLGKT+QSI FL I + GPFL+I+P
Sbjct: 958 LREYQLEGVNWLLFNWYNMR-NCILADEMGLGKTIQSITFLYEIY-LKGIHGPFLVIAPL 1015
Query: 100 STLHNWQQEMERFVPDFKVVPYWGSPQERKILR----QFWDMKNLHTKDA-SFHVVITSY 154
ST+ NW++E + + VV Y GS R+ ++ F D + K + FH +IT++
Sbjct: 1016 STIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTF 1074
Query: 155 QLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAEL 214
+++++D I W+ +++DEA +K+ + + L +++LL+GTP+QN++ EL
Sbjct: 1075 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 1134
Query: 215 WALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDV 274
++LLHF+ PS F S F + F D+ KT E + +L ILKP MLRR+K+DV
Sbjct: 1135 FSLLHFLEPSRFPSETTFMQEFG-DL------KT---EEQVQKLQAILKPMMLRRLKEDV 1184
Query: 275 ENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVM 334
E L+ K E ++ LT+ QK Y A+ +K + S GG N+ NL+N +M
Sbjct: 1185 EKNLAPKEETIIEVELTNIQKKYYRAILEK----NFTFLSKGGG---QANVP-NLLNTMM 1236
Query: 335 QFRKVCNHPELFERRDAK 352
+ RK CNHP L + K
Sbjct: 1237 ELRKCCNHPYLINGAEEK 1254
Score = 195 (73.7 bits), Expect = 4.0e-63, Sum P(2) = 4.0e-63
Identities = 45/123 (36%), Positives = 72/123 (58%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + K L E + F+ ++ AGKL
Sbjct: 1230 NLLNTMMELRKCCNHPYLINGAEEKI-LEEFKETHNAESPDFQLQ------AMIQAAGKL 1282
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL +LKA GHRVL++SQM + +D+LE++++ R+Y + R+DG + + R+ D F
Sbjct: 1283 VLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRF 1342
Query: 559 AVP 561
+ P
Sbjct: 1343 SKP 1345
Score = 40 (19.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 14/60 (23%), Positives = 24/60 (40%)
Query: 67 EMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQ 126
+MG+ +Q+ + +WGP + P +QQ+ + P P G PQ
Sbjct: 121 QMGVYPGIQNERHGQSFVDGGSMWGPRAVQVPDQIRAPYQQQQPQPAPSGP--PAQGHPQ 178
>UNIPROTKB|F1RT88 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:CU179734
Ensembl:ENSSSCT00000006828 Uniprot:F1RT88
Length = 2991
Score = 502 (181.8 bits), Expect = 4.0e-63, Sum P(2) = 4.0e-63
Identities = 122/318 (38%), Positives = 184/318 (57%)
Query: 41 LKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99
L+ YQL+G+NWL N Y+ N ILADEMGLGKT+QSI FL I + GPFL+I+P
Sbjct: 961 LREYQLEGVNWLLFNWYNMR-NCILADEMGLGKTIQSITFLYEIY-LKGIHGPFLVIAPL 1018
Query: 100 STLHNWQQEMERFVPDFKVVPYWGSPQERKILR----QFWDMKNLHTKDA-SFHVVITSY 154
ST+ NW++E + + VV Y GS R+ ++ F D + K + FH +IT++
Sbjct: 1019 STIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTF 1077
Query: 155 QLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAEL 214
+++++D I W+ +++DEA +K+ + + L +++LL+GTP+QN++ EL
Sbjct: 1078 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 1137
Query: 215 WALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDV 274
++LLHF+ PS F S F + F D+ KT E + +L ILKP MLRR+K+DV
Sbjct: 1138 FSLLHFLEPSRFPSETTFMQEFG-DL------KT---EEQVQKLQAILKPMMLRRLKEDV 1187
Query: 275 ENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVM 334
E L+ K E ++ LT+ QK Y A+ +K + S GG N+ NL+N +M
Sbjct: 1188 EKNLAPKEETIIEVELTNIQKKYYRAILEK----NFTFLSKGGG---QANVP-NLLNTMM 1239
Query: 335 QFRKVCNHPELFERRDAK 352
+ RK CNHP L + K
Sbjct: 1240 ELRKCCNHPYLINGAEEK 1257
Score = 195 (73.7 bits), Expect = 4.0e-63, Sum P(2) = 4.0e-63
Identities = 45/123 (36%), Positives = 72/123 (58%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + K L E + F+ ++ AGKL
Sbjct: 1233 NLLNTMMELRKCCNHPYLINGAEEKI-LEEFKETHNADSPDFQLQ------AMIQAAGKL 1285
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL +LKA GHRVL++SQM + +D+LE++++ R+Y + R+DG + + R+ D F
Sbjct: 1286 VLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRF 1345
Query: 559 AVP 561
+ P
Sbjct: 1346 SKP 1348
>UNIPROTKB|Q9P2D1 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] [GO:0008015 "blood circulation"
evidence=IEA] [GO:0030540 "female genitalia development"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043584 "nose development" evidence=IMP] [GO:0048806 "genitalia
development" evidence=IMP] [GO:0060021 "palate development"
evidence=IMP] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0001501 "skeletal system development"
evidence=IMP] [GO:0050890 "cognition" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0021545
"cranial nerve development" evidence=IMP] [GO:0060123 "regulation
of growth hormone secretion" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0030217 "T cell differentiation"
evidence=IMP] [GO:0060173 "limb development" evidence=IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0060324 "face development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008015 GO:GO:0003007 GO:GO:0050890
GO:GO:0001701 GO:GO:0040018 GO:GO:0007417 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 GO:GO:0048806 GO:GO:0042472
GO:GO:0001501 GO:GO:0060041 GO:GO:0007605 GO:GO:0007512
GO:GO:0004386 GO:GO:0035116 GO:GO:0060324 GO:GO:0060021
GO:GO:0060173 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150 CTD:55636
KO:K14437 OrthoDB:EOG4MCWZD EMBL:AC023102 EMBL:AC113143
EMBL:AB037837 EMBL:AK000364 EMBL:AK000368 EMBL:BC014681
EMBL:BC051264 EMBL:BC053890 EMBL:BC068000 EMBL:BC080627
EMBL:BC110818 IPI:IPI00472901 IPI:IPI00794880 RefSeq:NP_060250.2
UniGene:Hs.20395 UniGene:Hs.733236 PDB:2CKC PDB:2V0E PDB:2V0F
PDBsum:2CKC PDBsum:2V0E PDBsum:2V0F ProteinModelPortal:Q9P2D1
SMR:Q9P2D1 DIP:DIP-48685N IntAct:Q9P2D1 STRING:Q9P2D1
PhosphoSite:Q9P2D1 DMDM:148877246 PaxDb:Q9P2D1 PRIDE:Q9P2D1
Ensembl:ENST00000307121 Ensembl:ENST00000423902
Ensembl:ENST00000525508 GeneID:55636 KEGG:hsa:55636 UCSC:uc003xue.3
GeneCards:GC08P061642 H-InvDB:HIX0007533 HGNC:HGNC:20626 MIM:214800
MIM:608765 MIM:608892 MIM:612370 neXtProt:NX_Q9P2D1 Orphanet:138
Orphanet:478 Orphanet:432 PharmGKB:PA134948695 InParanoid:Q9P2D1
OMA:TFGVIFD EvolutionaryTrace:Q9P2D1 GenomeRNAi:55636 NextBio:60291
ArrayExpress:Q9P2D1 Bgee:Q9P2D1 CleanEx:HS_CHD7
Genevestigator:Q9P2D1 GermOnline:ENSG00000171316 GO:GO:0021545
GO:GO:0043584 GO:GO:0060123 Uniprot:Q9P2D1
Length = 2997
Score = 502 (181.8 bits), Expect = 4.0e-63, Sum P(2) = 4.0e-63
Identities = 122/318 (38%), Positives = 184/318 (57%)
Query: 41 LKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99
L+ YQL+G+NWL N Y+ N ILADEMGLGKT+QSI FL I + GPFL+I+P
Sbjct: 968 LREYQLEGVNWLLFNWYNMR-NCILADEMGLGKTIQSITFLYEIY-LKGIHGPFLVIAPL 1025
Query: 100 STLHNWQQEMERFVPDFKVVPYWGSPQERKILR----QFWDMKNLHTKDA-SFHVVITSY 154
ST+ NW++E + + VV Y GS R+ ++ F D + K + FH +IT++
Sbjct: 1026 STIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTF 1084
Query: 155 QLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAEL 214
+++++D I W+ +++DEA +K+ + + L +++LL+GTP+QN++ EL
Sbjct: 1085 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 1144
Query: 215 WALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDV 274
++LLHF+ PS F S F + F D+ KT E + +L ILKP MLRR+K+DV
Sbjct: 1145 FSLLHFLEPSRFPSETTFMQEFG-DL------KT---EEQVQKLQAILKPMMLRRLKEDV 1194
Query: 275 ENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVM 334
E L+ K E ++ LT+ QK Y A+ +K + S GG N+ NL+N +M
Sbjct: 1195 EKNLAPKEETIIEVELTNIQKKYYRAILEK----NFTFLSKGGG---QANVP-NLLNTMM 1246
Query: 335 QFRKVCNHPELFERRDAK 352
+ RK CNHP L + K
Sbjct: 1247 ELRKCCNHPYLINGAEEK 1264
Score = 195 (73.7 bits), Expect = 4.0e-63, Sum P(2) = 4.0e-63
Identities = 45/123 (36%), Positives = 72/123 (58%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + K L E + F+ ++ AGKL
Sbjct: 1240 NLLNTMMELRKCCNHPYLINGAEEKI-LEEFKETHNAESPDFQLQ------AMIQAAGKL 1292
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL +LKA GHRVL++SQM + +D+LE++++ R+Y + R+DG + + R+ D F
Sbjct: 1293 VLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRF 1352
Query: 559 AVP 561
+ P
Sbjct: 1353 SKP 1355
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 517 (187.1 bits), Expect = 5.2e-63, Sum P(2) = 5.2e-63
Identities = 118/302 (39%), Positives = 179/302 (59%)
Query: 35 GLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFL 94
GL +L+ YQL+G+NWLA + IL DEMGLGKT Q+IA ++A + GPFL
Sbjct: 42 GLTGIHLRPYQLEGVNWLAQCFHYQNGCILGDEMGLGKTCQTIAVFIYLAGRLNDEGPFL 101
Query: 95 IISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSY 154
I+ P S L NW++EMER P V Y G +ER L+Q D+K +++ FHV++T+Y
Sbjct: 102 ILCPLSVLSNWKEEMERCAPGLCCVTYAGDKEERAHLQQ--DLK----QESGFHVLLTTY 155
Query: 155 QLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAEL 214
++ + D + W L++DEA +K+ +S+ K L FS RLLL+GTPIQNS+ EL
Sbjct: 156 EICLKDASFLKSFPWSVLVVDEAHRLKNQNSLLHKSLSEFSVAFRLLLTGTPIQNSLQEL 215
Query: 215 WALLHFIMPSMFDSHDEFNEWFSK--DIESHAENKTSIDERHLSRLHMILKPFMLRRIKK 272
++LL F+ P +F S +E ++ + DIE +E+ S L+ +L+PF+LRR+K
Sbjct: 216 YSLLSFVEPDLF-SKEEVEDFVQRYEDIEKESESA--------SELYKLLQPFLLRRVKA 266
Query: 273 DVENELSDKIEIMVYCPLTSRQKLLYSA-LKKKIKIEDLIHSSSGGSIQLSNNIASNLMN 331
+V EL K E+++Y +++ QK Y A L K ++I D + ++L N + S L
Sbjct: 267 EVAAELPKKTEVVIYHGMSALQKKYYKAILMKDLEISDAFENEMAKKVKLQN-VLSQLRK 325
Query: 332 LV 333
V
Sbjct: 326 CV 327
Score = 325 (119.5 bits), Expect = 6.6e-38, Sum P(2) = 6.6e-38
Identities = 73/208 (35%), Positives = 122/208 (58%)
Query: 143 KDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLL 202
+++ FHV++T+Y++ + D + W L++DEA +K+ +S+ K L FS RLLL
Sbjct: 144 QESGFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQNSLLHKSLSEFSVAFRLLL 203
Query: 203 SGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSK--DIESHAENKTSIDERHLSRLHM 260
+GTPIQNS+ EL++LL F+ P +F S +E ++ + DIE +E+ S L+
Sbjct: 204 TGTPIQNSLQELYSLLSFVEPDLF-SKEEVEDFVQRYEDIEKESESA--------SELYK 254
Query: 261 ILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSA-LKKKIKIEDLIHSSSGGSI 319
+L+PF+LRR+K +V EL K E+++Y +++ QK Y A L K ++I D + +
Sbjct: 255 LLQPFLLRRVKAEVAAELPKKTEVVIYHGMSALQKKYYKAILMKDLEISDAFENEMAKKV 314
Query: 320 QLSNNIASNLMNLVMQFRKVCNHPELFE 347
+L N ++ Q RK +HP LF+
Sbjct: 315 KLQN--------VLSQLRKCVDHPYLFD 334
Score = 159 (61.0 bits), Expect = 5.2e-63, Sum P(2) = 5.2e-63
Identities = 31/61 (50%), Positives = 46/61 (75%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
L+ +GKL +LD LL L + GHRVL++SQMT+M+D+L+++M YR Y + R+DGS + E
Sbjct: 347 LIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEE 406
Query: 554 R 554
R
Sbjct: 407 R 407
Score = 43 (20.2 bits), Expect = 8.4e-51, Sum P(2) = 8.4e-51
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 360 EDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYL 399
+DY YRG ER +G++ E H+ QQP ++
Sbjct: 385 QDYMD-YRGYSYERVDGSVRGEERHLAIKN--FGQQPIFI 421
>TAIR|locus:2062999 [details] [associations]
symbol:BRM "AT2G46020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010199 "organ boundary specification between
lateral organs and the meristem" evidence=IGI] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=NAS;TAS] [GO:0040029
"regulation of gene expression, epigenetic" evidence=RCA;IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00951
GO:GO:0005829 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004386
EMBL:AC005397 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 EMBL:AC004665
EMBL:AJ703891 IPI:IPI00529654 IPI:IPI00541940 PIR:G84897
RefSeq:NP_182126.2 RefSeq:NP_973695.1 UniGene:At.48598
ProteinModelPortal:Q6EVK6 SMR:Q6EVK6 IntAct:Q6EVK6 STRING:Q6EVK6
PaxDb:Q6EVK6 PRIDE:Q6EVK6 EnsemblPlants:AT2G46020.2 GeneID:819210
KEGG:ath:AT2G46020 TAIR:At2g46020 HOGENOM:HOG000029719
InParanoid:Q6EVK6 KO:K11647 OMA:EMNAPKE PhylomeDB:Q6EVK6
ProtClustDB:CLSN2681222 ArrayExpress:Q6EVK6 Genevestigator:Q6EVK6
GO:GO:0010199 GO:GO:0040029 Uniprot:Q6EVK6
Length = 2193
Score = 538 (194.4 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
Identities = 118/332 (35%), Positives = 193/332 (58%)
Query: 28 EVERPQPGLFR-GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAET 86
EV QP + + G L+ YQL G+ W+ +LY+ +NGILADEMGLGKTVQ +A + ++ E
Sbjct: 967 EVVVRQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF 1026
Query: 87 YDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDAS 146
+GP LII P + L NW+ E+ ++P + Y G+ +R L + + K
Sbjct: 1027 KGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKL---FSQEVCAMK--- 1080
Query: 147 FHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTP 206
F+V++T+Y+ ++ D +++ W+Y+I+DEAQ +K S+ + L + C+ RLLL+GTP
Sbjct: 1081 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTP 1140
Query: 207 IQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI--ESHAEN------KTSIDERHLSRL 258
+QN + ELW+LL+ ++P +FD+ F++WF++ E A N +T + RL
Sbjct: 1141 LQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRL 1200
Query: 259 HMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK--IKIE---DLIHS 313
H IL+PFMLRR +DVE L K+ +++ C +++ Q +Y +K ++++ + + +
Sbjct: 1201 HQILEPFMLRRRVEDVEGSLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRA 1260
Query: 314 SSGGSIQLSNNIASNLMNLVMQFRKVCNHPEL 345
Q I L N M+ RK CNHP L
Sbjct: 1261 QKNPIYQAK--IYRTLNNRCMELRKACNHPLL 1290
Score = 154 (59.3 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
Identities = 27/61 (44%), Positives = 47/61 (77%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV GKL +LD +L +L+ +GHRVL++S MTK++D+LEE++ +R+ + R+DG++ + +
Sbjct: 1303 LVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLED 1362
Query: 554 R 554
R
Sbjct: 1363 R 1363
Score = 64 (27.6 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 439 IASNLMNLVMQFRKVCNHPEL---FERRDAKAPLAMSCED-YVIPKLVFEEALLCHKLTL 494
I L N M+ RK CNHP L + +K L SC +++ +++ + H++ L
Sbjct: 1270 IYRTLNNRCMELRKACNHPLLNYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLL 1329
Query: 495 VYDAGKL-SVLDDLLK 509
KL +L++ L+
Sbjct: 1330 FSTMTKLLDILEEYLQ 1345
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 528 (190.9 bits), Expect = 6.0e-63, Sum P(2) = 6.0e-63
Identities = 109/284 (38%), Positives = 172/284 (60%)
Query: 41 LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS 100
L+ YQL+G+NW+ + +G + ILADEMGLGKT+QSI+ L + YD+ GP+L++ P S
Sbjct: 405 LRDYQLEGLNWMVYAWCKGNSSILADEMGLGKTIQSISLLASLFHRYDLAGPYLVVVPLS 464
Query: 101 TLHNWQQEMERFVPDFKVVPYWGSPQERKILRQF-WDMKNLHTKDASFHVVITSYQLVVS 159
T+ WQ+E ++ P+ +V Y G R ++RQ+ W + TK + ++T+Y++++
Sbjct: 465 TMAAWQKEFAQWAPEMNLVVYMGDVVSRDMIRQYEWFVGG--TKKMKINAILTTYEILLK 522
Query: 160 DFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLH 219
D + + I W L++DEA +K+ S+ +K L F ++LL++GTP+QNS+ ELWALLH
Sbjct: 523 DKAFLSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNHKLLITGTPLQNSLKELWALLH 582
Query: 220 FIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELS 279
FIMP FD +EF +H E+ + + +S LH L+PF+LRR+KKDVE L
Sbjct: 583 FIMPEKFDCWEEFET-------AHNES----NHKGISALHKKLEPFLLRRVKKDVEKSLP 631
Query: 280 DKIEIMVYCPLTSRQKLLYS-ALKKKIK-IEDLIHSSSGGSIQL 321
K E ++ +T+ QK Y L K + + + S G + L
Sbjct: 632 PKTEQILRVDMTAHQKQFYKWILTKNYRELSKGVKGSINGFVNL 675
Score = 158 (60.7 bits), Expect = 6.0e-63, Sum P(2) = 6.0e-63
Identities = 33/72 (45%), Positives = 48/72 (66%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
L+ +GKL +LD LL RLK GHRVL++SQM M+D+L+E++ R++ RLDGS +
Sbjct: 706 LLKSSGKLILLDKLLCRLKDKGHRVLIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADL 765
Query: 554 RR---DMFAVPG 562
R+ D + PG
Sbjct: 766 RKQALDHYNAPG 777
Score = 147 (56.8 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 41/121 (33%), Positives = 66/121 (54%)
Query: 230 DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCP 289
++F+ W ++ E+ A N+++ + +S LH L+PF+LRR+KKDVE L K E ++
Sbjct: 587 EKFDCW--EEFET-AHNESN--HKGISALHKKLEPFLLRRVKKDVEKSLPPKTEQILRVD 641
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 349
+T+ QK Y + K E + GSI + +NLVM+ +K CNH L +
Sbjct: 642 MTAHQKQFYKWILTKNYRE--LSKGVKGSI-------NGFVNLVMELKKCCNHASLTRQY 692
Query: 350 D 350
D
Sbjct: 693 D 693
Score = 60 (26.2 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 434 QLSNNIASNL---MNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIP---KLVFEEAL 487
+LS + ++ +NLVM+ +K CNH L + D A ++ KL+ + L
Sbjct: 660 ELSKGVKGSINGFVNLVMELKKCCNHASLTRQYDHIYDDAQGRLQQLLKSSGKLILLDKL 719
Query: 488 LC 489
LC
Sbjct: 720 LC 721
Score = 38 (18.4 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 403 FFESTQNMVSPALKKKIKIEDLI-HSSS 429
FFE Q M ++ K+E ++ H +S
Sbjct: 294 FFECEQQMAEELCEEYKKVERVVAHQTS 321
>UNIPROTKB|E1BPM4 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:DAAA02038386
EMBL:DAAA02038387 EMBL:DAAA02038388 IPI:IPI00697020
Ensembl:ENSBTAT00000026607 Uniprot:E1BPM4
Length = 2940
Score = 499 (180.7 bits), Expect = 7.9e-63, Sum P(2) = 7.9e-63
Identities = 121/318 (38%), Positives = 184/318 (57%)
Query: 41 LKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99
L+ YQL+G+NWL N Y+ N ILADEMGLGKT+QSI FL I + GPFL+I+P
Sbjct: 918 LREYQLEGVNWLLFNWYNMR-NCILADEMGLGKTIQSITFLYEIY-LKGIHGPFLVIAPL 975
Query: 100 STLHNWQQEMERFVPDFKVVPYWGSPQERKILR----QFWDMKNLHTKDA-SFHVVITSY 154
ST+ NW++E + + VV Y GS R+ ++ F D + K + FH +IT++
Sbjct: 976 STIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTF 1034
Query: 155 QLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAEL 214
+++++D I W+ +++DEA +K+ + + L +++LL+GTP+QN++ EL
Sbjct: 1035 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 1094
Query: 215 WALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDV 274
++LLHF+ P+ F S F + F D+ KT E + +L ILKP MLRR+K+DV
Sbjct: 1095 FSLLHFLEPTRFPSETTFMQEFG-DL------KT---EEQVQKLQAILKPMMLRRLKEDV 1144
Query: 275 ENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVM 334
E L+ K E ++ LT+ QK Y A+ +K + S GG N+ NL+N +M
Sbjct: 1145 EKNLAPKEETIIEVELTNIQKKYYRAILEK----NFAFLSKGGG---QANVP-NLLNTMM 1196
Query: 335 QFRKVCNHPELFERRDAK 352
+ RK CNHP L + K
Sbjct: 1197 ELRKCCNHPYLINGAEEK 1214
Score = 195 (73.7 bits), Expect = 7.9e-63, Sum P(2) = 7.9e-63
Identities = 45/123 (36%), Positives = 72/123 (58%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + K L E + F+ ++ AGKL
Sbjct: 1190 NLLNTMMELRKCCNHPYLINGAEEKI-LEEFKETHNADSPDFQLQ------AMIQAAGKL 1242
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL +LKA GHRVL++SQM + +D+LE++++ R+Y + R+DG + + R+ D F
Sbjct: 1243 VLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRF 1302
Query: 559 AVP 561
+ P
Sbjct: 1303 SKP 1305
Score = 37 (18.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 347 ERRDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDP 389
E++ K P A + + ++ +E T P+ P +P++P
Sbjct: 589 EKKKKKRPKAKKDPKEPKEPKEKKEPKEPKT--PKAPKIPKEP 629
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 497 (180.0 bits), Expect = 7.9e-63, Sum P(2) = 7.9e-63
Identities = 121/318 (38%), Positives = 183/318 (57%)
Query: 41 LKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99
L+ YQL+G+NWL N Y+ N ILADEMGLGKT+QSI FL I + GPFL+I+P
Sbjct: 206 LREYQLEGVNWLLFNWYNTR-NCILADEMGLGKTIQSITFLYEIY-LKGIHGPFLVIAPL 263
Query: 100 STLHNWQQEMERFVPDFKVVPYWGSPQERKILR----QFWDMKNLHTKDA-SFHVVITSY 154
ST+ NW++E + + VV Y GS R+ ++ F D + K + FH +IT++
Sbjct: 264 STIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTF 322
Query: 155 QLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAEL 214
+++++D I W+ +++DEA +K+ + + L +++LL+GTP+QN++ EL
Sbjct: 323 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 382
Query: 215 WALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDV 274
++LLHF+ P F S F + F D+ KT E + +L ILKP MLRR+K+DV
Sbjct: 383 FSLLHFLEPGRFPSETTFMQEFG-DL------KT---EEQVQKLQAILKPMMLRRLKEDV 432
Query: 275 ENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVM 334
E L+ K E ++ LT+ QK Y A+ +K + S GG N+ NL+N +M
Sbjct: 433 EKNLAPKEETIIEVELTNIQKKYYRAILEK----NFAFLSKGGG---QANVP-NLLNTMM 484
Query: 335 QFRKVCNHPELFERRDAK 352
+ RK CNHP L + K
Sbjct: 485 ELRKCCNHPYLINGAEEK 502
Score = 194 (73.4 bits), Expect = 7.9e-63, Sum P(2) = 7.9e-63
Identities = 45/123 (36%), Positives = 72/123 (58%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + K L E + F+ ++ AGKL
Sbjct: 478 NLLNTMMELRKCCNHPYLINGAEEKI-LEEFKETHNADSPDFQLQ------AMIQAAGKL 530
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL +LKA GHRVL++SQM + +D+LE++++ R+Y + R+DG + + R+ D F
Sbjct: 531 VLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRF 590
Query: 559 AVP 561
+ P
Sbjct: 591 SRP 593
Score = 38 (18.4 bits), Expect = 2.1e-46, Sum P(2) = 2.1e-46
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 537 YRKYRFMRLDGSSKISERRDMFAVPGILTHQ 567
Y KY MR D + ER M I Q
Sbjct: 1041 YEKYNSMRADSTLCFLERVGMPDAKAIAAEQ 1071
Score = 38 (18.4 bits), Expect = 2.1e-46, Sum P(2) = 2.1e-46
Identities = 16/64 (25%), Positives = 26/64 (40%)
Query: 403 FFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRK----VCNHPE 458
+F NM + +K +D S ++ AS + + RK V +HP+
Sbjct: 1251 YFNGFVNMCRRVCRMPVKPDDEPPDLSTMIEPITEERASRTLYRIELLRKIREQVLHHPQ 1310
Query: 459 LFER 462
L ER
Sbjct: 1311 LGER 1314
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 643 (231.4 bits), Expect = 8.1e-63, Sum P(2) = 8.1e-63
Identities = 136/352 (38%), Positives = 218/352 (61%)
Query: 8 VEVEKQRSQQ--FGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILA 65
VE ++ R+++ + S + +V + G LK YQ+KG+ WL +LY+ +NGILA
Sbjct: 738 VEDDEYRTEEQTYYSIAHTIHEKVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILA 797
Query: 66 DEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSP 125
DEMGLGKT+Q+I+ + ++ + V GP+LII P STL NW E E++ P VV Y GSP
Sbjct: 798 DEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSP 857
Query: 126 QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSS 185
Q R++L+ M+ TK F+V++T+Y+ V+ D +I+W+Y+I+DE +K+
Sbjct: 858 QGRRLLQN--QMRA--TK---FNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHC 910
Query: 186 MRWKLL-LGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHA 244
++L + RLLL+GTP+QN + ELWALL+F++PS+F S F +WF+ +
Sbjct: 911 KLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTG 970
Query: 245 ENKTSIDERH----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSA 300
E K ++E + RLH +L+PF+LRR+KK+VE++L DK+E ++ C +++ Q++LY
Sbjct: 971 E-KVELNEEETILIIRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKH 1029
Query: 301 LKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAK 352
++ K + L S G + A LMN ++Q RK+CNHP +F+ + K
Sbjct: 1030 MQSKGVL--LTDGSEKG--KHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEK 1077
Score = 184 (69.8 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 48/166 (28%), Positives = 92/166 (55%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP + Y+ C + Q ++ ++ K + L S G + A LMN ++Q R
Sbjct: 1007 LPDKVEYIIKCDMSALQRVLYKHMQSKGVL--LTDGSEKG--KHGKGGAKALMNTIVQLR 1062
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ + K C+ +V L ++++ GK +LD +L +L
Sbjct: 1063 KLCNHPFMFQHIEEKY-----CDHTGGHGVVSGPDL--YRVS-----GKFELLDRILPKL 1110
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM 557
KA+ HRVL++ QMT+ + ++E+++ +R++ ++RLDG++K +R ++
Sbjct: 1111 KATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGEL 1156
Score = 42 (19.8 bits), Expect = 8.1e-63, Sum P(2) = 8.1e-63
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 414 ALKKKIKIEDLIHSSSGGSIQLSNNIAS 441
A+K K+K+ + S+ Q S+N++S
Sbjct: 1581 AVKMKLKLNKSLASAPATPTQSSSNVSS 1608
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 512 (185.3 bits), Expect = 8.5e-63, Sum P(2) = 8.5e-63
Identities = 114/321 (35%), Positives = 187/321 (58%)
Query: 5 RHAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGIL 64
R + R +G++ P + ++E+ + G L+ +QL G+NW+A L+ + NGIL
Sbjct: 340 REESALSPSRGTNYGNSRPKYR-KLEQQPSYITGGELRDFQLTGVNWMAYLWHKNENGIL 398
Query: 65 ADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGS 124
ADEMGLGKTVQ++AFL ++A + GPFL++ P ST+ WQ+ + + D + Y G+
Sbjct: 399 ADEMGLGKTVQTVAFLSYLAHSLRQHGPFLVVVPLSTVPAWQETLALWASDMNCISYLGN 458
Query: 125 PQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSS 184
R+++R + + T+ F++++T+Y+ V+ D + IKWQY+ +DEA +K+S
Sbjct: 459 TTSRQVIRDY-EFYVDGTQKIKFNLLLTTYEYVLKDRSVLSNIKWQYMAIDEAHRLKNSE 517
Query: 185 SMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHA 244
S ++ L F NRLL++GTP+QN++ EL AL+ F+MP F+ +E N +E+
Sbjct: 518 SSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEIN------LEAPD 571
Query: 245 ENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLY-SALKK 303
E + E ++ L L+P++LRR+KKDVE L K E ++ L+ Q Y + L +
Sbjct: 572 EEQ----EAYIRSLQEHLQPYILRRLKKDVEKSLPSKSERILRVELSDLQMYWYKNILTR 627
Query: 304 KIKIEDLIHS-SSGGSIQLSN 323
++ L S SSG I L N
Sbjct: 628 NYRV--LTQSISSGSQISLLN 646
Score = 172 (65.6 bits), Expect = 8.5e-63, Sum P(2) = 8.5e-63
Identities = 43/130 (33%), Positives = 73/130 (56%)
Query: 435 LSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTL 494
+S+ +L+N+V++ +K NHP LF+ + ++ + +E L L
Sbjct: 636 ISSGSQISLLNIVVELKKASNHPYLFDGVEESWMQKINSQGRR------DEVLK----GL 685
Query: 495 VYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISER 554
+ ++GK+ +LD LL RL+ GHRVL++SQM +M+D+L +++ R Y RLDG+ + R
Sbjct: 686 IMNSGKMVLLDKLLSRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVR 745
Query: 555 R---DMFAVP 561
R D F P
Sbjct: 746 RTSIDHFNAP 755
Score = 129 (50.5 bits), Expect = 0.00023, P = 0.00023
Identities = 37/108 (34%), Positives = 58/108 (53%)
Query: 241 ESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLY-S 299
E + E E ++ L L+P++LRR+KKDVE L K E ++ L+ Q Y +
Sbjct: 564 EINLEAPDEEQEAYIRSLQEHLQPYILRRLKKDVEKSLPSKSERILRVELSDLQMYWYKN 623
Query: 300 ALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
L + ++ L S S GS Q+S L+N+V++ +K NHP LF+
Sbjct: 624 ILTRNYRV--LTQSISSGS-QIS------LLNIVVELKKASNHPYLFD 662
>FB|FBgn0032157 [details] [associations]
symbol:Etl1 "Etl1 homologue" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006281 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 OMA:KEERYMA EMBL:AY060597
RefSeq:NP_001033889.1 RefSeq:NP_001033890.1 RefSeq:NP_609320.2
UniGene:Dm.3953 ProteinModelPortal:Q9VL72 SMR:Q9VL72 IntAct:Q9VL72
STRING:Q9VL72 PRIDE:Q9VL72 EnsemblMetazoa:FBtr0079901 GeneID:34311
KEGG:dme:Dmel_CG5899 UCSC:CG5899-RA FlyBase:FBgn0032157
InParanoid:Q9VL72 PhylomeDB:Q9VL72 GenomeRNAi:34311 NextBio:787873
Bgee:Q9VL72 Uniprot:Q9VL72
Length = 844
Score = 496 (179.7 bits), Expect = 9.6e-63, Sum P(2) = 9.6e-63
Identities = 119/321 (37%), Positives = 188/321 (58%)
Query: 33 QPGLFRGNLK--HYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVW 90
QP L L+ YQ+ G+NWL ++ Q +NGILADEMGLGKT+Q IAFL ++ E
Sbjct: 279 QPKLLSSGLQLADYQIIGLNWLTVMHKQEMNGILADEMGLGKTIQVIAFLAYLKENGLSQ 338
Query: 91 GPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVV 150
LI+ P+STL NW+ E+ R+ P+ V Y GS ER+ +R + K+ T F V+
Sbjct: 339 AAHLIVVPSSTLDNWEAEISRWCPELVVEKYHGSQDERRRMRGRF-AKDGFT---GFDVL 394
Query: 151 ITSYQLVVS---DFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
+T+Y +V S + K F K Y+I DEA +K+ ++ R+ L+ + R R+LL+GTP+
Sbjct: 395 LTTYHIVGSTPEERKMFRVCKLDYVIFDEAHMLKNMTTQRYANLITINARMRILLTGTPL 454
Query: 208 QNSMAELWALLHFIMPSMF-DSHDEFNEWFSKDIESHAENK--TSIDERHLSRLHMILKP 264
QN++ EL +LL F+MP F S ++ F+K +S + + E + R I+KP
Sbjct: 455 QNNLLELISLLCFVMPKFFAKSIEDIKSLFAKKGKSDGDQDEVSQFQETQIQRAKRIMKP 514
Query: 265 FMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNN 324
F+LRR+KKDV L K+ ++ P++S+QK+ Y L ++ +S++ G + S+
Sbjct: 515 FVLRRLKKDVLKNLPKKLSLVEKVPMSSQQKIYYHEL-----VD--YYSNNKGEVCSSSE 567
Query: 325 IASNLMNLVMQFRKVCNHPEL 345
A + ++M+ R++ NHP L
Sbjct: 568 RAG--IAIMMEMRRIANHPLL 586
Score = 176 (67.0 bits), Expect = 9.6e-63, Sum P(2) = 9.6e-63
Identities = 32/64 (50%), Positives = 49/64 (76%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
L+ D+GK LD LL +LKA GHRVL++SQ T M+D++EE++ RK+ F RLDG++ ++
Sbjct: 647 LICDSGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNV 706
Query: 554 RRDM 557
R+D+
Sbjct: 707 RQDL 710
Score = 52 (23.4 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 416 KKKIKIEDLI--HSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPEL 459
++KI +L+ +S++ G + S+ A + ++M+ R++ NHP L
Sbjct: 543 QQKIYYHELVDYYSNNKGEVCSSSERAG--IAIMMEMRRIANHPLL 586
Score = 40 (19.1 bits), Expect = 2.0e-48, Sum P(2) = 2.0e-48
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 394 QQPTYLPVCFFEST-QNMVSPALKKKIKIEDLIHSSSGGSI 433
Q+P + EST + + A ++K+K+E I S+ G +
Sbjct: 767 QRPVTIYRLISESTIEEGILMAAEEKLKLEKDITSNEKGEV 807
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 502 (181.8 bits), Expect = 1.0e-62, Sum P(2) = 1.0e-62
Identities = 122/318 (38%), Positives = 184/318 (57%)
Query: 41 LKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99
L+ YQL+G+NWL N Y+ N ILADEMGLGKT+QSI FL I + GPFL+I+P
Sbjct: 957 LREYQLEGVNWLLFNWYNMR-NCILADEMGLGKTIQSITFLYEIY-LKGIHGPFLVIAPL 1014
Query: 100 STLHNWQQEMERFVPDFKVVPYWGSPQERKILR----QFWDMKNLHTKDA-SFHVVITSY 154
ST+ NW++E + + VV Y GS R+ ++ F D + K + FH +IT++
Sbjct: 1015 STIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTF 1073
Query: 155 QLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAEL 214
+++++D I W+ +++DEA +K+ + + L +++LL+GTP+QN++ EL
Sbjct: 1074 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 1133
Query: 215 WALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDV 274
++LLHF+ PS F S F + F D+ KT E + +L ILKP MLRR+K+DV
Sbjct: 1134 FSLLHFLEPSRFPSETTFMQEFG-DL------KT---EEQVQKLQAILKPMMLRRLKEDV 1183
Query: 275 ENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVM 334
E L+ K E ++ LT+ QK Y A+ +K + S GG N+ NL+N +M
Sbjct: 1184 EKNLAPKEETIIEVELTNIQKKYYRAILEK----NFTFLSKGGG---QANVP-NLLNTMM 1235
Query: 335 QFRKVCNHPELFERRDAK 352
+ RK CNHP L + K
Sbjct: 1236 ELRKCCNHPYLINGAEEK 1253
Score = 191 (72.3 bits), Expect = 1.0e-62, Sum P(2) = 1.0e-62
Identities = 45/124 (36%), Positives = 73/124 (58%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKL-TLVYDAGK 500
NL+N +M+ RK CNHP L + K E++ K +L ++ AGK
Sbjct: 1229 NLLNTMMELRKCCNHPYLINGAEEKI-----LEEF---KDAHNADSPDFQLQAMIQAAGK 1280
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DM 557
L ++D LL +LKA GHRVL++SQM + +D+LE++++ R+Y + R+DG + + R+ D
Sbjct: 1281 LVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDR 1340
Query: 558 FAVP 561
F+ P
Sbjct: 1341 FSKP 1344
Score = 39 (18.8 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 89 VWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQ 126
+WGP + P +QQ+ + P P G PQ
Sbjct: 144 MWGPRAVQVPDQIRAPYQQQQPQPAPSGP--PAQGHPQ 179
>ZFIN|ZDB-GENE-081104-186 [details] [associations]
symbol:si:ch211-227i14.2 "si:ch211-227i14.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS51194 SMART:SM00717 ZFIN:ZDB-GENE-081104-186
GO:GO:0005524 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR017877
PROSITE:PS50090 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 EMBL:AL929056
EMBL:CABZ01053382 EMBL:CABZ01053383 IPI:IPI00890401
Ensembl:ENSDART00000111655 Bgee:F1Q5V1 Uniprot:F1Q5V1
Length = 3108
Score = 540 (195.1 bits), Expect = 1.6e-62, Sum P(3) = 1.6e-62
Identities = 102/265 (38%), Positives = 164/265 (61%)
Query: 34 PGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPF 93
P L G+L+ YQ G+ WLA+L+ + +NGILADE GLGKTVQ++A+ H+A +WGP
Sbjct: 1054 PSLLHGSLREYQQVGVEWLASLHRKNLNGILADETGLGKTVQTVAYFAHLACNQGIWGPH 1113
Query: 94 LIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITS 153
L++ L NW+ E +R+ P K++ Y GS ++R+ R W N +FHV +TS
Sbjct: 1114 LVVVRTCKLLNWEMEFKRWCPGLKILLYLGSRRQRRYKRSRWCEPN------NFHVCVTS 1167
Query: 154 YQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAE 213
Y+L++ D +F R +W++L+LDE Q IK+ + W+ + + R+LL TP+QN++ E
Sbjct: 1168 YKLLLKDQSHFLRRRWKHLVLDEVQLIKNMTEKHWETIFNIKSQQRILLINTPLQNTLKE 1227
Query: 214 LWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKD 273
LW ++HF++P + +H N F I+ + + + RLH +++PF+LRR K+D
Sbjct: 1228 LWTMIHFLLPGI--THPYLN--FP--IKPGTDQNQDYCHKLVIRLHRMIQPFILRRSKRD 1281
Query: 274 VENELSDKIEIMVYCPLTSRQKLLY 298
VE ++ K E ++ C L+ RQK +Y
Sbjct: 1282 VEKQMPKKYEHILKCRLSKRQKSMY 1306
Score = 348 (127.6 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 69/205 (33%), Positives = 124/205 (60%)
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
+FHV +TSY+L++ D +F R +W++L+LDE Q IK+ + W+ + + R+LL T
Sbjct: 1160 NFHVCVTSYKLLLKDQSHFLRRRWKHLVLDEVQLIKNMTEKHWETIFNIKSQQRILLINT 1219
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN++ ELW ++HF++P + +H N F I+ + + + RLH +++PF
Sbjct: 1220 PLQNTLKELWTMIHFLLPGI--THPYLN--FP--IKPGTDQNQDYCHKLVIRLHRMIQPF 1273
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR K+DVE ++ K E ++ C L+ RQK +Y + LI S+ +++ + +
Sbjct: 1274 ILRRSKRDVEKQMPKKYEHILKCRLSKRQKSMYEDI--------LIQPSAQEALKTGHFV 1325
Query: 326 ASNLMNLVMQFRKVCNHPELFERRD 350
++ ++MQ +K+CNHP+L + RD
Sbjct: 1326 --RVLEVLMQLQKICNHPDLIQPRD 1348
Score = 143 (55.4 bits), Expect = 1.6e-62, Sum P(3) = 1.6e-62
Identities = 34/95 (35%), Positives = 53/95 (55%)
Query: 463 RDAKAPLAMSCEDYVIPKLV-FEEALLCHKLTLVYDAGKLSVLDDLLKRLKASGHRVLVY 521
++A AP P + F +A H L + AGKL L LL++L A RVL++
Sbjct: 1836 QEASAPFNAEIRKLACPPVASFPDA---HMLEMD-SAGKLEALSILLQKLSAENRRVLIF 1891
Query: 522 SQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRD 556
+QM M+D+LE F+ +R ++RLD S + ER++
Sbjct: 1892 TQMASMLDILESFLDHRHLTYVRLDESLSLEERQE 1926
Score = 88 (36.0 bits), Expect = 7.7e-56, Sum P(2) = 7.7e-56
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 416 KKKIKIED-LIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCE 474
++K ED LI S+ +++ + + ++ ++MQ +K+CNHP+L + RD
Sbjct: 1301 RQKSMYEDILIQPSAQEALKTGHFV--RVLEVLMQLQKICNHPDLIQPRDTHNSYVCQPL 1358
Query: 475 DYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEE 533
Y P L+ AL + V D ++++ K + L +MTK L+EE
Sbjct: 1359 QYNTPSLLLN-ALQQDQWKTV-DLSLFDLINNEGKLTRYEAEEALPKIRMTKQ--LIEE 1413
Score = 38 (18.4 bits), Expect = 1.6e-62, Sum P(3) = 1.6e-62
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 383 PHVPRDPVILPQQPTYLPV 401
P V P + PQ P+ +P+
Sbjct: 1525 PGVTTMPAVTPQAPSPVPL 1543
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 497 (180.0 bits), Expect = 1.7e-62, Sum P(2) = 1.7e-62
Identities = 121/318 (38%), Positives = 183/318 (57%)
Query: 41 LKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99
L+ YQL+G+NWL N Y+ N ILADEMGLGKT+QSI FL I + GPFL+I+P
Sbjct: 969 LREYQLEGVNWLLFNWYNTR-NCILADEMGLGKTIQSITFLYEIY-LKGIHGPFLVIAPL 1026
Query: 100 STLHNWQQEMERFVPDFKVVPYWGSPQERKILR----QFWDMKNLHTKDA-SFHVVITSY 154
ST+ NW++E + + VV Y GS R+ ++ F D + K + FH +IT++
Sbjct: 1027 STIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTF 1085
Query: 155 QLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAEL 214
+++++D I W+ +++DEA +K+ + + L +++LL+GTP+QN++ EL
Sbjct: 1086 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 1145
Query: 215 WALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDV 274
++LLHF+ P F S F + F D+ KT E + +L ILKP MLRR+K+DV
Sbjct: 1146 FSLLHFLEPGRFPSETTFMQEFG-DL------KT---EEQVQKLQAILKPMMLRRLKEDV 1195
Query: 275 ENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVM 334
E L+ K E ++ LT+ QK Y A+ +K + S GG N+ NL+N +M
Sbjct: 1196 EKNLAPKEETIIEVELTNIQKKYYRAILEK----NFAFLSKGGG---QANVP-NLLNTMM 1247
Query: 335 QFRKVCNHPELFERRDAK 352
+ RK CNHP L + K
Sbjct: 1248 ELRKCCNHPYLINGAEEK 1265
Score = 194 (73.4 bits), Expect = 1.7e-62, Sum P(2) = 1.7e-62
Identities = 45/123 (36%), Positives = 72/123 (58%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + K L E + F+ ++ AGKL
Sbjct: 1241 NLLNTMMELRKCCNHPYLINGAEEKI-LEEFKETHNADSPDFQLQ------AMIQAAGKL 1293
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL +LKA GHRVL++SQM + +D+LE++++ R+Y + R+DG + + R+ D F
Sbjct: 1294 VLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRF 1353
Query: 559 AVP 561
+ P
Sbjct: 1354 SRP 1356
Score = 39 (18.8 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 67 EMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVP 114
+MG+ ++Q+ ++ +WGP + P +QQ+ ++ P
Sbjct: 122 QMGVYPSMQNERHGQPFVDSGSMWGPRAVQVPDQIRAPYQQQQQQPQP 169
Score = 38 (18.4 bits), Expect = 4.5e-46, Sum P(2) = 4.5e-46
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 537 YRKYRFMRLDGSSKISERRDMFAVPGILTHQ 567
Y KY MR D + ER M I Q
Sbjct: 1804 YEKYNSMRADSTLCFLERVGMPDAKAIAAEQ 1834
Score = 38 (18.4 bits), Expect = 4.5e-46, Sum P(2) = 4.5e-46
Identities = 16/64 (25%), Positives = 26/64 (40%)
Query: 403 FFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRK----VCNHPE 458
+F NM + +K +D S ++ AS + + RK V +HP+
Sbjct: 2014 YFNGFVNMCRRVCRMPVKPDDEPPDLSTMIEPITEERASRTLYRIELLRKIREQVLHHPQ 2073
Query: 459 LFER 462
L ER
Sbjct: 2074 LGER 2077
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 498 (180.4 bits), Expect = 2.7e-62, Sum P(2) = 2.7e-62
Identities = 124/319 (38%), Positives = 189/319 (59%)
Query: 41 LKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99
L+ YQL+GMNWL N Y++ N ILADEMGLGKT+QSI FL I + GPFLII+P
Sbjct: 461 LREYQLEGMNWLLFNWYNRK-NCILADEMGLGKTIQSITFLSEIF-LRGIHGPFLIIAPL 518
Query: 100 STLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDM--KNLHTKDAS----FHVVITS 153
ST+ NW++E + + + Y GS R++++Q+ +M ++ S FHVVIT+
Sbjct: 519 STITNWEREFRTWT-EMNAIVYHGSQISRQMIQQY-EMVYRDAQGNPLSGVFKFHVVITT 576
Query: 154 YQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAE 213
++++++D +I W +I+DEA +K+ + + L + +++LL+GTP+QNS+ E
Sbjct: 577 FEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEE 636
Query: 214 LWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKD 273
L++LL+F+ PS F S F E F D+ KT E + +L ILKP MLRR+K D
Sbjct: 637 LFSLLNFLEPSQFPSETAFLEEFG-DL------KT---EEQVKKLQSILKPMMLRRLKDD 686
Query: 274 VENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLV 333
VE L+ K E ++ LT+ QK Y A+ +K + + G + +N+ NL+N +
Sbjct: 687 VEKNLAPKQETIIEVELTNIQKKYYRAILEK----NFSFLTKGAN---QHNMP-NLINTM 738
Query: 334 MQFRKVCNHPELFERRDAK 352
M+ RK CNHP L + K
Sbjct: 739 MELRKCCNHPYLINGAEEK 757
Score = 190 (71.9 bits), Expect = 2.7e-62, Sum P(2) = 2.7e-62
Identities = 44/123 (35%), Positives = 71/123 (57%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + K ED+ K +A ++ AGKL
Sbjct: 733 NLINTMMELRKCCNHPYLINGAEEKI-----LEDF--RKTHSPDAPDFQLQAMIQAAGKL 785
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL +L A GH+VL++SQM + +D+LE++++ R+Y + R+DG + + R+ D F
Sbjct: 786 VLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRF 845
Query: 559 AVP 561
P
Sbjct: 846 CKP 848
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 498 (180.4 bits), Expect = 2.7e-62, Sum P(2) = 2.7e-62
Identities = 124/319 (38%), Positives = 189/319 (59%)
Query: 41 LKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99
L+ YQL+GMNWL N Y++ N ILADEMGLGKT+QSI FL I + GPFLII+P
Sbjct: 461 LREYQLEGMNWLLFNWYNRK-NCILADEMGLGKTIQSITFLSEIF-LRGIHGPFLIIAPL 518
Query: 100 STLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDM--KNLHTKDAS----FHVVITS 153
ST+ NW++E + + + Y GS R++++Q+ +M ++ S FHVVIT+
Sbjct: 519 STITNWEREFRTWT-EMNAIVYHGSQISRQMIQQY-EMVYRDAQGNPLSGVFKFHVVITT 576
Query: 154 YQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAE 213
++++++D +I W +I+DEA +K+ + + L + +++LL+GTP+QNS+ E
Sbjct: 577 FEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEE 636
Query: 214 LWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKD 273
L++LL+F+ PS F S F E F D+ KT E + +L ILKP MLRR+K D
Sbjct: 637 LFSLLNFLEPSQFPSETAFLEEFG-DL------KT---EEQVKKLQSILKPMMLRRLKDD 686
Query: 274 VENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLV 333
VE L+ K E ++ LT+ QK Y A+ +K + + G + +N+ NL+N +
Sbjct: 687 VEKNLAPKQETIIEVELTNIQKKYYRAILEK----NFSFLTKGAN---QHNMP-NLINTM 738
Query: 334 MQFRKVCNHPELFERRDAK 352
M+ RK CNHP L + K
Sbjct: 739 MELRKCCNHPYLINGAEEK 757
Score = 190 (71.9 bits), Expect = 2.7e-62, Sum P(2) = 2.7e-62
Identities = 44/123 (35%), Positives = 71/123 (57%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + K ED+ K +A ++ AGKL
Sbjct: 733 NLINTMMELRKCCNHPYLINGAEEKI-----LEDF--RKTHSPDAPDFQLQAMIQAAGKL 785
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL +L A GH+VL++SQM + +D+LE++++ R+Y + R+DG + + R+ D F
Sbjct: 786 VLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRF 845
Query: 559 AVP 561
P
Sbjct: 846 CKP 848
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 498 (180.4 bits), Expect = 2.7e-62, Sum P(2) = 2.7e-62
Identities = 124/319 (38%), Positives = 189/319 (59%)
Query: 41 LKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99
L+ YQL+GMNWL N Y++ N ILADEMGLGKT+QSI FL I + GPFLII+P
Sbjct: 461 LREYQLEGMNWLLFNWYNRK-NCILADEMGLGKTIQSITFLSEIF-LRGIHGPFLIIAPL 518
Query: 100 STLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDM--KNLHTKDAS----FHVVITS 153
ST+ NW++E + + + Y GS R++++Q+ +M ++ S FHVVIT+
Sbjct: 519 STITNWEREFRTWT-EMNAIVYHGSQISRQMIQQY-EMVYRDAQGNPLSGVFKFHVVITT 576
Query: 154 YQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAE 213
++++++D +I W +I+DEA +K+ + + L + +++LL+GTP+QNS+ E
Sbjct: 577 FEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEE 636
Query: 214 LWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKD 273
L++LL+F+ PS F S F E F D+ KT E + +L ILKP MLRR+K D
Sbjct: 637 LFSLLNFLEPSQFPSETAFLEEFG-DL------KT---EEQVKKLQSILKPMMLRRLKDD 686
Query: 274 VENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLV 333
VE L+ K E ++ LT+ QK Y A+ +K + + G + +N+ NL+N +
Sbjct: 687 VEKNLAPKQETIIEVELTNIQKKYYRAILEK----NFSFLTKGAN---QHNMP-NLINTM 738
Query: 334 MQFRKVCNHPELFERRDAK 352
M+ RK CNHP L + K
Sbjct: 739 MELRKCCNHPYLINGAEEK 757
Score = 190 (71.9 bits), Expect = 2.7e-62, Sum P(2) = 2.7e-62
Identities = 44/123 (35%), Positives = 71/123 (57%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + K ED+ K +A ++ AGKL
Sbjct: 733 NLINTMMELRKCCNHPYLINGAEEKI-----LEDF--RKTHSPDAPDFQLQAMIQAAGKL 785
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL +L A GH+VL++SQM + +D+LE++++ R+Y + R+DG + + R+ D F
Sbjct: 786 VLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRF 845
Query: 559 AVP 561
P
Sbjct: 846 CKP 848
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 473 (171.6 bits), Expect = 3.8e-62, Sum P(3) = 3.8e-62
Identities = 106/277 (38%), Positives = 170/277 (61%)
Query: 27 TEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAET 86
TE + + GL +L+ YQL G+ WL+ IL DEMGLGKT Q+I+ L + +
Sbjct: 21 TENDLKKWGLGAIHLRPYQLDGVKWLSLCMKNQQGCILGDEMGLGKTCQTISLLAYARGS 80
Query: 87 YDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDAS 146
+ GPFL++ P + L NW+QE+ERF P V+ Y G ++R L+Q NL + D
Sbjct: 81 LKMNGPFLVLCPLAVLENWRQELERFCPSLSVICYTGDKEKRAELQQ-----NLKS-DPR 134
Query: 147 FHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTP 206
FHV++T+Y++ + D +Y KW+ L++DEA +K+ S+ + L F+ R+LL+GTP
Sbjct: 135 FHVLLTTYEMCLKDARYLKSWKWKILVVDEAHRLKNQESLLHQTLKEFTVGFRVLLTGTP 194
Query: 207 IQNSMAELWALLHFIMPSMF--DSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKP 264
IQN++ E+++LL FI PS+F ++ ++F ++ DI++ +DE LH +L+P
Sbjct: 195 IQNNLQEVYSLLTFIQPSVFLPEAVEDFVNAYA-DIQTEP---ALVDE-----LHQVLQP 245
Query: 265 FMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSAL 301
F+LRR+K +V EL K E++V+ L++ QK Y A+
Sbjct: 246 FLLRRVKAEVAAELPKKTELVVFHGLSALQKRYYKAI 282
Score = 163 (62.4 bits), Expect = 3.8e-62, Sum P(3) = 3.8e-62
Identities = 31/61 (50%), Positives = 46/61 (75%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
LV +GKLS+LD +L L+ GH VL++SQMT+M+D+L++++ YR Y + RLDGS + E
Sbjct: 331 LVEASGKLSLLDSMLAYLQEGGHHVLLFSQMTRMLDILQDYLEYRGYSYERLDGSVRGEE 390
Query: 554 R 554
R
Sbjct: 391 R 391
Score = 141 (54.7 bits), Expect = 9.2e-18, Sum P(2) = 9.2e-18
Identities = 35/108 (32%), Positives = 62/108 (57%)
Query: 240 IESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYS 299
+ ++A+ +T + + LH +L+PF+LRR+K +V EL K E++V+ L++ QK Y
Sbjct: 223 VNAYADIQT--EPALVDELHQVLQPFLLRRVKAEVAAELPKKTELVVFHGLSALQKRYYK 280
Query: 300 ALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
A I + DL + + + + L+N++MQ RK +HP LF+
Sbjct: 281 A----ILMRDL------DAFRTDQSTKTRLLNVLMQLRKCVDHPYLFD 318
Score = 59 (25.8 bits), Expect = 3.8e-62, Sum P(3) = 3.8e-62
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 441 SNLMNLVMQFRKVCNHPELFE 461
+ L+N++MQ RK +HP LF+
Sbjct: 298 TRLLNVLMQLRKCVDHPYLFD 318
Score = 38 (18.4 bits), Expect = 4.2e-45, Sum P(2) = 4.2e-45
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 360 EDYHRLYRGRQMEREEGTILPE 381
+DY YRG ER +G++ E
Sbjct: 369 QDYLE-YRGYSYERLDGSVRGE 389
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 484 (175.4 bits), Expect = 1.4e-61, Sum P(2) = 1.4e-61
Identities = 115/310 (37%), Positives = 176/310 (56%)
Query: 20 STTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAF 79
S P F ++P + G L+ +QL G+NW+A L+ + NGILADEMGLGKTVQ++AF
Sbjct: 342 SQRPRFEKLFKQPV-FIKNGELRDFQLTGLNWMAFLWSRNENGILADEMGLGKTVQTVAF 400
Query: 80 LCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKN 139
L + GP L++ P ST+ WQ+ E++ PD V Y G+ + RK +R++ ++ N
Sbjct: 401 LSWLIYARRQNGPHLVVVPLSTVPAWQETFEKWAPDVNCVYYLGNGEARKTIREY-ELYN 459
Query: 140 LHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNR 199
+ K F+V++T+Y+ ++ D KWQ+L +DEA +K++ S ++ L GF NR
Sbjct: 460 QNRKP-KFNVLLTTYEYILKDKNELGAFKWQFLAVDEAHRLKNAESSLYEALKGFKVSNR 518
Query: 200 LLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLH 259
LL++GTP+QN++ EL AL +F+MP F E + F + I+S E+++ L
Sbjct: 519 LLITGTPLQNNVKELAALCNFLMPGKFTIDQEID--F-ETIDSE-------QEQYIKDLQ 568
Query: 260 MILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSI 319
+ PF+LRR+KKDVE L K E ++ L+ Q Y + K L + G I
Sbjct: 569 KKISPFILRRLKKDVEKSLPSKSERILRVELSDIQTEYYKNIITK-NYAALNAGNRGSQI 627
Query: 320 QLSNNIASNL 329
L N I S L
Sbjct: 628 SLLN-IMSEL 636
Score = 189 (71.6 bits), Expect = 1.4e-61, Sum P(2) = 1.4e-61
Identities = 45/124 (36%), Positives = 71/124 (57%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++ + +K NHP LF+ ED V+ K K +V +GK+
Sbjct: 628 SLLNIMSELKKASNHPYLFD----------GAEDKVLDKAGSPSRENTLK-GIVMSSGKM 676
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L+ LL RL+ GHRVL++SQM +M+D+L ++M + Y+F RLDG+ S+R+ D F
Sbjct: 677 VLLEQLLSRLRKEGHRVLIFSQMVRMLDILGDYMFIKGYQFQRLDGTVPSSKRKIAIDHF 736
Query: 559 AVPG 562
PG
Sbjct: 737 NAPG 740
Score = 37 (18.1 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 226 FDSHDEFNEWFSKDIESHAENKTSID 251
FD DE +++ EN+ ID
Sbjct: 149 FDEEDEEGDYYYYQQAIEPENERGID 174
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 475 (172.3 bits), Expect = 1.8e-61, Sum P(2) = 1.8e-61
Identities = 122/358 (34%), Positives = 190/358 (53%)
Query: 12 KQRSQQFGSTTPSFSTEVERPQPGLFRGNLK-H-YQLKGMNWLANLYDQGINGILADEMG 69
K R + + T + + E L LK H +Q++G++WL + QGI ILADEMG
Sbjct: 236 KGRQRDRPAPTIDLNKKYEDQPVFLKEAGLKLHPFQIEGVSWLRYSWGQGIPTILADEMG 295
Query: 70 LGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERK 129
LGKT+Q++ FL + + GPFLI P STL NW++E+E + P+ V Y G R
Sbjct: 296 LGKTIQTVVFLYSLFKEGHCRGPFLISVPLSTLTNWERELELWAPELYCVTYVGGKTARA 355
Query: 130 ILRQ----FWDM--KNLHTKDAS--FHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIK 181
++R+ F ++ K + F+V++TSY+ + D + I W L++DEA ++
Sbjct: 356 VIRKHEISFEEVTTKTMRENQTQYKFNVMLTSYEFISVDAAFLGCIDWAALVVDEAHRLR 415
Query: 182 SSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIE 241
S+ S +++L + +LLL+GTP+QN++ EL+ LL+F+ F+ F F+ D+
Sbjct: 416 SNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKFNDLQTFQAEFT-DVS 474
Query: 242 SHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYS-A 300
E + RLH IL+P MLRR+K DV + K E +V L+S QK Y
Sbjct: 475 K---------EEQVKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHI 525
Query: 301 LKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMS 358
L K K ++ GG + +L+N++M RK CNHP LF +A ++ S
Sbjct: 526 LTKNFKA---LNQKGGGRV-------CSLLNIMMDLRKCCNHPYLFPSAAEEATISPS 573
Score = 188 (71.2 bits), Expect = 1.8e-61, Sum P(2) = 1.8e-61
Identities = 45/109 (41%), Positives = 67/109 (61%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M RK CNHP LF P A E + P ++E + +L +GKL
Sbjct: 543 SLLNIMMDLRKCCNHPYLF-------PSAAE-EATISPSGLYEMS------SLTKASGKL 588
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
+L +LK+LKA HRVL++SQMTKM+++LE F+ Y++ R+DGS K
Sbjct: 589 DLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIK 637
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 465 (168.7 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 118/306 (38%), Positives = 176/306 (57%)
Query: 39 GNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHI-AETYDVWGPFLIIS 97
G L YQL+G+NWL + QG + ILADEMGLGKTVQ+I FL + E GP+L+ +
Sbjct: 629 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEQGHSKGPYLVSA 688
Query: 98 PASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWDM-----KNLHT--KDAS 146
P ST+ NW++E E + PDF VV Y G + R ++R+ F D K + K+A
Sbjct: 689 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEAQ 748
Query: 147 --FHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSG 204
FHV++TSY+L+ D I+W L++DEA +K++ S +++L + +LLL+G
Sbjct: 749 IKFHVLLTSYELITIDQAVLGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 808
Query: 205 TPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKP 264
TP+QN++ EL+ LL+F+ P F++ + F E F+ DI E + +LH +L P
Sbjct: 809 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISK---------EDQIKKLHDLLGP 858
Query: 265 FMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSN- 323
MLRR+K DV + K E++V L+ QK Y + + E L +S GG Q+S
Sbjct: 859 HMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR-NFEAL--NSKGGGNQVSLL 915
Query: 324 NIASNL 329
NI +L
Sbjct: 916 NIMMDL 921
Score = 209 (78.6 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 49/124 (39%), Positives = 73/124 (58%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M +K CNHP LF +AP V+P ++ +LV +GKL
Sbjct: 913 SLLNIMMDLKKCCNHPYLFPVAAVEAP--------VLPNGSYDGN------SLVKSSGKL 958
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +LK+L+ GHRVL++SQMTKM+DLLE+F+ Y Y++ R+DG R+ D F
Sbjct: 959 MLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRF 1018
Query: 559 AVPG 562
PG
Sbjct: 1019 NAPG 1022
Score = 151 (58.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 41/118 (34%), Positives = 61/118 (51%)
Query: 239 DIESHAENKTSID-ERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLL 297
++E E I E + +LH +L P MLRR+K DV + K E++V L+ QK
Sbjct: 832 NLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKY 891
Query: 298 YSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPL 355
Y + + E L +S GG Q+S L+N++M +K CNHP LF +AP+
Sbjct: 892 YKFILTR-NFEAL--NSKGGGNQVS------LLNIMMDLKKCCNHPYLFPVAAVEAPV 940
Score = 56 (24.8 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 393 PQQPTYLPVCFFESTQNMVSPALKKKIK 420
PQQP PV T+ P +KKKIK
Sbjct: 160 PQQPALPPVIRKAKTKEGKGPGVKKKIK 187
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 639 (230.0 bits), Expect = 2.7e-61, P = 2.7e-61
Identities = 127/348 (36%), Positives = 211/348 (60%)
Query: 6 HAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILA 65
++++ + SQ + + + S VE+ L G LKHYQL+G+ W+ +LY+ +NGILA
Sbjct: 696 YSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILA 755
Query: 66 DEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSP 125
DEMGLGKT+Q+IA + ++ E + GP+LII P STL NW E +++ P + Y G+P
Sbjct: 756 DEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTP 815
Query: 126 QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSS 185
R+ L + L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+
Sbjct: 816 AMRRSL-----VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHC 868
Query: 186 MRWKLL-LGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHA 244
++L + R+LL+GTP+QN + ELWALL+F++P++F S F +WF+
Sbjct: 869 KLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG 928
Query: 245 ENKTSIDERH----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSA 300
E + ++E + RLH +L+PF+LRR+KK+VE++L +K+E ++ C +++ QK+LY
Sbjct: 929 E-RVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH 987
Query: 301 LKKK-IKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
++ K I + D G A LMN +MQ RK+CNHP +F+
Sbjct: 988 MQAKGILLTDGSEKDKKGK-----GGAKTLMNTIMQLRKICNHPYMFQ 1030
Score = 198 (74.8 bits), Expect = 8.7e-12, P = 8.7e-12
Identities = 47/174 (27%), Positives = 91/174 (52%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + A LMN +MQ R
Sbjct: 965 LPEKVEYVIKCDMSALQKI----LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLR 1020
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L + ++ + L +GK +LD +L +L
Sbjct: 1021 KICNHPYMFQH----------IEESFAEHLGYSNGVI-NGAELYRASGKFELLDRILPKL 1069
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM---FAVPG 562
+A+ HRVL++ QMT ++ ++E++ +R + ++RLDG++K +R + F PG
Sbjct: 1070 RATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1123
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 504 (182.5 bits), Expect = 2.7e-61, Sum P(2) = 2.7e-61
Identities = 117/308 (37%), Positives = 180/308 (58%)
Query: 28 EVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY 87
E + Q GL +L+ YQL+G+NWLA + IL DEMGLGKT Q+IA ++A
Sbjct: 35 EQDLRQWGLTGIHLRPYQLQGVNWLAQCFHCQNGCILGDEMGLGKTCQTIALFIYLAGRL 94
Query: 88 DVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASF 147
+ GPFLI+ P S L NW++EMERF P V Y G +R L+Q D+K +++ F
Sbjct: 95 NDEGPFLILCPLSVLSNWKEEMERFAPGLSCVTYAGDKDKRACLQQ--DLK----QESRF 148
Query: 148 HVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
HV++T+Y++ + D + W L++DEA +K+ SS+ K L FS LLL+GTPI
Sbjct: 149 HVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPI 208
Query: 208 QNSMAELWALLHFIMPSMFDSH--DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
QNS+ EL++LL F+ P +F ++F + + +DIE +E+ S L+ +L+PF
Sbjct: 209 QNSLQELYSLLSFVEPDLFSKEQVEDFVQRY-QDIEKESESA--------SELYKLLQPF 259
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR+K +V EL K E+++Y +++ QK Y A+ +K D + + ++L N +
Sbjct: 260 LLRRVKAEVATELPRKTEVVIYHGMSALQKKYYKAIL--MKDLDAFENETAKKVKLQN-V 316
Query: 326 ASNLMNLV 333
S L V
Sbjct: 317 LSQLRKCV 324
Score = 156 (60.0 bits), Expect = 2.7e-61, Sum P(2) = 2.7e-61
Identities = 30/61 (49%), Positives = 46/61 (75%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
L+ +GKL +LD LL L + GHRVL++SQMT+M+D+L++++ YR Y + R+DGS + E
Sbjct: 344 LIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEE 403
Query: 554 R 554
R
Sbjct: 404 R 404
Score = 134 (52.2 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 35/115 (30%), Positives = 62/115 (53%)
Query: 236 FSKD-IESHAENKTSIDERH--LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTS 292
FSK+ +E + I++ S L+ +L+PF+LRR+K +V EL K E+++Y +++
Sbjct: 227 FSKEQVEDFVQRYQDIEKESESASELYKLLQPFLLRRVKAEVATELPRKTEVVIYHGMSA 286
Query: 293 RQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
QK Y A+ +K D + + ++L N ++ Q RK +HP LF+
Sbjct: 287 LQKKYYKAIL--MKDLDAFENETAKKVKLQN--------VLSQLRKCVDHPYLFD 331
Score = 52 (23.4 bits), Expect = 2.4e-50, Sum P(2) = 2.4e-50
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 443 LMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAG 499
L N++ Q RK +HP LF D P D++I + + LL L +Y G
Sbjct: 313 LQNVLSQLRKCVDHPYLF---DGVEPEPFEIGDHLI-EASGKLHLLDKLLAFLYSKG 365
Score = 41 (19.5 bits), Expect = 2.7e-51, Sum P(3) = 2.7e-51
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 360 EDYHRLYRGRQMEREEGTILPEFPHV 385
+DY YRG ER +G++ E H+
Sbjct: 382 QDYLD-YRGYSYERVDGSVRGEERHL 406
Score = 39 (18.8 bits), Expect = 2.7e-51, Sum P(3) = 2.7e-51
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 421 IEDLIHSSSGGSIQLSNNI 439
+E++++ + +QL+N I
Sbjct: 477 VEEIVYRKAASKLQLTNTI 495
Score = 39 (18.8 bits), Expect = 5.6e-49, Sum P(2) = 5.6e-49
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 307 IEDLIHSSSGGSIQLSNNI 325
+E++++ + +QL+N I
Sbjct: 477 VEEIVYRKAASKLQLTNTI 495
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 639 (230.0 bits), Expect = 2.9e-61, P = 2.9e-61
Identities = 127/348 (36%), Positives = 211/348 (60%)
Query: 6 HAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILA 65
++++ + SQ + + + S VE+ L G LKHYQL+G+ W+ +LY+ +NGILA
Sbjct: 671 YSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILA 730
Query: 66 DEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSP 125
DEMGLGKT+Q+IA + ++ E + GP+LII P STL NW E +++ P + Y G+P
Sbjct: 731 DEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTP 790
Query: 126 QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSS 185
R+ L + L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+
Sbjct: 791 AMRRSL-----VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHC 843
Query: 186 MRWKLL-LGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHA 244
++L + R+LL+GTP+QN + ELWALL+F++P++F S F +WF+
Sbjct: 844 KLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG 903
Query: 245 ENKTSIDERH----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSA 300
E + ++E + RLH +L+PF+LRR+KK+VE++L +K+E ++ C +++ QK+LY
Sbjct: 904 E-RVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH 962
Query: 301 LKKK-IKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
++ K I + D G A LMN +MQ RK+CNHP +F+
Sbjct: 963 MQAKGILLTDGSEKDKKGK-----GGAKTLMNTIMQLRKICNHPYMFQ 1005
Score = 198 (74.8 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 47/174 (27%), Positives = 91/174 (52%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + A LMN +MQ R
Sbjct: 940 LPEKVEYVIKCDMSALQKI----LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLR 995
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L + ++ + L +GK +LD +L +L
Sbjct: 996 KICNHPYMFQH----------IEESFAEHLGYSNGVI-NGAELYRASGKFELLDRILPKL 1044
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM---FAVPG 562
+A+ HRVL++ QMT ++ ++E++ +R + ++RLDG++K +R + F PG
Sbjct: 1045 RATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1098
Score = 38 (18.4 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 319 IQLSNNIASNLMNLVMQFRKVCNHPELFERRDAK 352
+Q ++ +NL NLV + ++ E +RR K
Sbjct: 512 LQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRKK 545
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 639 (230.0 bits), Expect = 2.9e-61, P = 2.9e-61
Identities = 127/348 (36%), Positives = 211/348 (60%)
Query: 6 HAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILA 65
++++ + SQ + + + S VE+ L G LKHYQL+G+ W+ +LY+ +NGILA
Sbjct: 673 YSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILA 732
Query: 66 DEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSP 125
DEMGLGKT+Q+IA + ++ E + GP+LII P STL NW E +++ P + Y G+P
Sbjct: 733 DEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTP 792
Query: 126 QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSS 185
R+ L + L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+
Sbjct: 793 AMRRSL-----VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHC 845
Query: 186 MRWKLL-LGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHA 244
++L + R+LL+GTP+QN + ELWALL+F++P++F S F +WF+
Sbjct: 846 KLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG 905
Query: 245 ENKTSIDERH----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSA 300
E + ++E + RLH +L+PF+LRR+KK+VE++L +K+E ++ C +++ QK+LY
Sbjct: 906 E-RVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH 964
Query: 301 LKKK-IKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
++ K I + D G A LMN +MQ RK+CNHP +F+
Sbjct: 965 MQAKGILLTDGSEKDKKGK-----GGAKTLMNTIMQLRKICNHPYMFQ 1007
Score = 198 (74.8 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 47/174 (27%), Positives = 91/174 (52%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + A LMN +MQ R
Sbjct: 942 LPEKVEYVIKCDMSALQKI----LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLR 997
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L + ++ + L +GK +LD +L +L
Sbjct: 998 KICNHPYMFQH----------IEESFAEHLGYSNGVI-NGAELYRASGKFELLDRILPKL 1046
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM---FAVPG 562
+A+ HRVL++ QMT ++ ++E++ +R + ++RLDG++K +R + F PG
Sbjct: 1047 RATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1100
Score = 38 (18.4 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 319 IQLSNNIASNLMNLVMQFRKVCNHPELFERRDAK 352
+Q ++ +NL NLV + ++ E +RR K
Sbjct: 514 LQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRK 547
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 639 (230.0 bits), Expect = 2.9e-61, P = 2.9e-61
Identities = 127/348 (36%), Positives = 211/348 (60%)
Query: 6 HAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILA 65
++++ + SQ + + + S VE+ L G LKHYQL+G+ W+ +LY+ +NGILA
Sbjct: 673 YSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILA 732
Query: 66 DEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSP 125
DEMGLGKT+Q+IA + ++ E + GP+LII P STL NW E +++ P + Y G+P
Sbjct: 733 DEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTP 792
Query: 126 QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSS 185
R+ L + L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+
Sbjct: 793 AMRRSL-----VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHC 845
Query: 186 MRWKLL-LGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHA 244
++L + R+LL+GTP+QN + ELWALL+F++P++F S F +WF+
Sbjct: 846 KLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG 905
Query: 245 ENKTSIDERH----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSA 300
E + ++E + RLH +L+PF+LRR+KK+VE++L +K+E ++ C +++ QK+LY
Sbjct: 906 E-RVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH 964
Query: 301 LKKK-IKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
++ K I + D G A LMN +MQ RK+CNHP +F+
Sbjct: 965 MQAKGILLTDGSEKDKKGK-----GGAKTLMNTIMQLRKICNHPYMFQ 1007
Score = 198 (74.8 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 47/174 (27%), Positives = 91/174 (52%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + A LMN +MQ R
Sbjct: 942 LPEKVEYVIKCDMSALQKI----LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLR 997
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L + ++ + L +GK +LD +L +L
Sbjct: 998 KICNHPYMFQH----------IEESFAEHLGYSNGVI-NGAELYRASGKFELLDRILPKL 1046
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM---FAVPG 562
+A+ HRVL++ QMT ++ ++E++ +R + ++RLDG++K +R + F PG
Sbjct: 1047 RATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1100
Score = 38 (18.4 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 319 IQLSNNIASNLMNLVMQFRKVCNHPELFERRDAK 352
+Q ++ +NL NLV + ++ E +RR K
Sbjct: 514 LQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRK 547
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 639 (230.0 bits), Expect = 3.0e-61, P = 3.0e-61
Identities = 127/348 (36%), Positives = 211/348 (60%)
Query: 6 HAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILA 65
++++ + SQ + + + S VE+ L G LKHYQL+G+ W+ +LY+ +NGILA
Sbjct: 673 YSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILA 732
Query: 66 DEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSP 125
DEMGLGKT+Q+IA + ++ E + GP+LII P STL NW E +++ P + Y G+P
Sbjct: 733 DEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTP 792
Query: 126 QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSS 185
R+ L + L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+
Sbjct: 793 AMRRSL-----VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHC 845
Query: 186 MRWKLL-LGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHA 244
++L + R+LL+GTP+QN + ELWALL+F++P++F S F +WF+
Sbjct: 846 KLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG 905
Query: 245 ENKTSIDERH----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSA 300
E + ++E + RLH +L+PF+LRR+KK+VE++L +K+E ++ C +++ QK+LY
Sbjct: 906 E-RVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH 964
Query: 301 LKKK-IKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
++ K I + D G A LMN +MQ RK+CNHP +F+
Sbjct: 965 MQAKGILLTDGSEKDKKGK-----GGAKTLMNTIMQLRKICNHPYMFQ 1007
Score = 198 (74.8 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 47/174 (27%), Positives = 91/174 (52%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + A LMN +MQ R
Sbjct: 942 LPEKVEYVIKCDMSALQKI----LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLR 997
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L + ++ + L +GK +LD +L +L
Sbjct: 998 KICNHPYMFQH----------IEESFAEHLGYSNGVI-NGAELYRASGKFELLDRILPKL 1046
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM---FAVPG 562
+A+ HRVL++ QMT ++ ++E++ +R + ++RLDG++K +R + F PG
Sbjct: 1047 RATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1100
Score = 38 (18.4 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 319 IQLSNNIASNLMNLVMQFRKVCNHPELFERRDAK 352
+Q ++ +NL NLV + ++ E +RR K
Sbjct: 514 LQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRK 547
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 639 (230.0 bits), Expect = 3.0e-61, P = 3.0e-61
Identities = 127/348 (36%), Positives = 211/348 (60%)
Query: 6 HAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILA 65
++++ + SQ + + + S VE+ L G LKHYQL+G+ W+ +LY+ +NGILA
Sbjct: 694 YSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILA 753
Query: 66 DEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSP 125
DEMGLGKT+Q+IA + ++ E + GP+LII P STL NW E +++ P + Y G+P
Sbjct: 754 DEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTP 813
Query: 126 QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSS 185
R+ L + L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+
Sbjct: 814 AMRRSL-----VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHC 866
Query: 186 MRWKLL-LGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHA 244
++L + R+LL+GTP+QN + ELWALL+F++P++F S F +WF+
Sbjct: 867 KLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG 926
Query: 245 ENKTSIDERH----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSA 300
E + ++E + RLH +L+PF+LRR+KK+VE++L +K+E ++ C +++ QK+LY
Sbjct: 927 E-RVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH 985
Query: 301 LKKK-IKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
++ K I + D G A LMN +MQ RK+CNHP +F+
Sbjct: 986 MQAKGILLTDGSEKDKKGK-----GGAKTLMNTIMQLRKICNHPYMFQ 1028
Score = 198 (74.8 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 47/174 (27%), Positives = 91/174 (52%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + A LMN +MQ R
Sbjct: 963 LPEKVEYVIKCDMSALQKI----LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLR 1018
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L + ++ + L +GK +LD +L +L
Sbjct: 1019 KICNHPYMFQH----------IEESFAEHLGYSNGVI-NGAELYRASGKFELLDRILPKL 1067
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM---FAVPG 562
+A+ HRVL++ QMT ++ ++E++ +R + ++RLDG++K +R + F PG
Sbjct: 1068 RATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1121
Score = 38 (18.4 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 319 IQLSNNIASNLMNLVMQFRKVCNHPELFERRDAK 352
+Q ++ +NL NLV + ++ E +RR K
Sbjct: 535 LQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRK 568
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 639 (230.0 bits), Expect = 3.1e-61, P = 3.1e-61
Identities = 127/348 (36%), Positives = 211/348 (60%)
Query: 6 HAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILA 65
++++ + SQ + + + S VE+ L G LKHYQL+G+ W+ +LY+ +NGILA
Sbjct: 689 YSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILA 748
Query: 66 DEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSP 125
DEMGLGKT+Q+IA + ++ E + GP+LII P STL NW E +++ P + Y G+P
Sbjct: 749 DEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTP 808
Query: 126 QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSS 185
R+ L + L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+
Sbjct: 809 AMRRSL-----VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHC 861
Query: 186 MRWKLL-LGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHA 244
++L + R+LL+GTP+QN + ELWALL+F++P++F S F +WF+
Sbjct: 862 KLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG 921
Query: 245 ENKTSIDERH----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSA 300
E + ++E + RLH +L+PF+LRR+KK+VE++L +K+E ++ C +++ QK+LY
Sbjct: 922 E-RVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH 980
Query: 301 LKKK-IKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
++ K I + D G A LMN +MQ RK+CNHP +F+
Sbjct: 981 MQAKGILLTDGSEKDKKGK-----GGAKTLMNTIMQLRKICNHPYMFQ 1023
Score = 198 (74.8 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 47/174 (27%), Positives = 91/174 (52%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + A LMN +MQ R
Sbjct: 958 LPEKVEYVIKCDMSALQKI----LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLR 1013
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L + ++ + L +GK +LD +L +L
Sbjct: 1014 KICNHPYMFQH----------IEESFAEHLGYSNGVI-NGAELYRASGKFELLDRILPKL 1062
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM---FAVPG 562
+A+ HRVL++ QMT ++ ++E++ +R + ++RLDG++K +R + F PG
Sbjct: 1063 RATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1116
Score = 38 (18.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 319 IQLSNNIASNLMNLVMQFRKVCNHPELFERRDAK 352
+Q ++ +NL NLV + ++ E +RR K
Sbjct: 530 LQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRK 563
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 639 (230.0 bits), Expect = 3.1e-61, P = 3.1e-61
Identities = 127/348 (36%), Positives = 211/348 (60%)
Query: 6 HAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILA 65
++++ + SQ + + + S VE+ L G LKHYQL+G+ W+ +LY+ +NGILA
Sbjct: 696 YSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILA 755
Query: 66 DEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSP 125
DEMGLGKT+Q+IA + ++ E + GP+LII P STL NW E +++ P + Y G+P
Sbjct: 756 DEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTP 815
Query: 126 QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSS 185
R+ L + L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+
Sbjct: 816 AMRRSL-----VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHC 868
Query: 186 MRWKLL-LGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHA 244
++L + R+LL+GTP+QN + ELWALL+F++P++F S F +WF+
Sbjct: 869 KLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG 928
Query: 245 ENKTSIDERH----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSA 300
E + ++E + RLH +L+PF+LRR+KK+VE++L +K+E ++ C +++ QK+LY
Sbjct: 929 E-RVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH 987
Query: 301 LKKK-IKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
++ K I + D G A LMN +MQ RK+CNHP +F+
Sbjct: 988 MQAKGILLTDGSEKDKKGK-----GGAKTLMNTIMQLRKICNHPYMFQ 1030
Score = 198 (74.8 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 47/174 (27%), Positives = 91/174 (52%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + A LMN +MQ R
Sbjct: 965 LPEKVEYVIKCDMSALQKI----LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLR 1020
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L + ++ + L +GK +LD +L +L
Sbjct: 1021 KICNHPYMFQH----------IEESFAEHLGYSNGVI-NGAELYRASGKFELLDRILPKL 1069
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM---FAVPG 562
+A+ HRVL++ QMT ++ ++E++ +R + ++RLDG++K +R + F PG
Sbjct: 1070 RATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1123
>UNIPROTKB|F1P0A4 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR020838 Pfam:PF00176 Pfam:PF13892 GO:GO:0005524
GO:GO:0003677 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016817 GeneTree:ENSGT00680000100002 EMBL:AADN02016239
EMBL:AADN02016240 IPI:IPI00819661 Ensembl:ENSGALT00000038610
ArrayExpress:F1P0A4 Uniprot:F1P0A4
Length = 469
Score = 567 (204.7 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 118/307 (38%), Positives = 184/307 (59%)
Query: 5 RHAVEVEKQRSQQF---GSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGIN 61
RH E++ ++ S T + T E + G L+ YQ++G+NWL +LY+ GIN
Sbjct: 127 RHR-RTEQEEDEELLTESSKTTNVCTRFEESPSYVKWGKLRDYQVRGLNWLISLYENGIN 185
Query: 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121
GILADEMGLGKT+Q+I+ L ++ ++ GP +++ P STLHNW E +R+VP + V
Sbjct: 186 GILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPTLRAVCL 245
Query: 122 WGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIK 181
G +R + D+ + V +TSY++++ + F + W+YL++DEA IK
Sbjct: 246 IGDKDQRAAFVR--DV----LLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIK 299
Query: 182 SSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIE 241
+ S +++ F NRLLL+GTP+QN++ ELWALL+F++P +F+S ++F+ WF
Sbjct: 300 NEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDT--- 356
Query: 242 SHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSA- 300
N D++ + RLHM+L+PF+LRRIK DVE L K E+ +Y L+ Q+ Y+
Sbjct: 357 ----NNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRI 412
Query: 301 LKKKIKI 307
L K I I
Sbjct: 413 LMKDIDI 419
Score = 396 (144.5 bits), Expect = 8.7e-37, P = 8.7e-37
Identities = 79/206 (38%), Positives = 127/206 (61%)
Query: 149 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
V +TSY++++ + F + W+YL++DEA IK+ S +++ F NRLLL+GTP+Q
Sbjct: 267 VCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 326
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLR 268
N++ ELWALL+F++P +F+S ++F+ WF N D++ + RLHM+L+PF+LR
Sbjct: 327 NNLHELWALLNFLLPDVFNSSEDFDSWFDT-------NNCLGDQKLVERLHMVLRPFLLR 379
Query: 269 RIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASN 328
RIK DVE L K E+ +Y L+ Q+ Y+ +I ++D+ +S G +
Sbjct: 380 RIKADVEKSLPPKKEVKIYVGLSKMQREWYT----RILMKDIDILNSAGKLD-----KMR 430
Query: 329 LMNLVMQFRKVCNHPELFERRDAKAP 354
L+N++MQ RK CNHP LF+ + P
Sbjct: 431 LLNILMQLRKCCNHPYLFDGAEPGPP 456
Score = 76 (31.8 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 443 LMNLVMQFRKVCNHPELFERRDAKAP 468
L+N++MQ RK CNHP LF+ + P
Sbjct: 431 LLNILMQLRKCCNHPYLFDGAEPGPP 456
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 502 (181.8 bits), Expect = 4.5e-61, Sum P(2) = 4.5e-61
Identities = 117/308 (37%), Positives = 179/308 (58%)
Query: 28 EVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETY 87
E + Q GL +L+ YQL+G+NWLA + IL DEMGLGKT Q+IA ++A
Sbjct: 35 EQDLRQWGLTGIHLRPYQLQGVNWLAQCFHCQNGCILGDEMGLGKTCQTIALFIYLAGRL 94
Query: 88 DVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASF 147
+ GPFLI+ P S L NW++EMERF P V Y G +R L+Q D+K +++ F
Sbjct: 95 NDEGPFLILCPLSVLSNWKEEMERFAPGLSCVTYAGDKDKRACLQQ--DLK----QESRF 148
Query: 148 HVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPI 207
HV++T+Y++ + D + W L++DEA +K+ SS+ K L FS LLL+GTPI
Sbjct: 149 HVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPI 208
Query: 208 QNSMAELWALLHFIMPSMFDSH--DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
QNS+ EL++LL F+ P +F ++F + + +DIE +E+ S L+ +L+PF
Sbjct: 209 QNSLQELYSLLSFVEPDLFSKEQVEDFVQRY-QDIEKESESA--------SELYKLLQPF 259
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR+K +V EL K E+++Y +++ QK Y A+ +K D + ++L N +
Sbjct: 260 LLRRVKAEVATELPRKTEVVIYHGMSALQKKYYKAIL--MKDLDAFENEMAKKVKLQN-V 316
Query: 326 ASNLMNLV 333
S L V
Sbjct: 317 LSQLRKCV 324
Score = 156 (60.0 bits), Expect = 4.5e-61, Sum P(2) = 4.5e-61
Identities = 30/61 (49%), Positives = 46/61 (75%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
L+ +GKL +LD LL L + GHRVL++SQMT+M+D+L++++ YR Y + R+DGS + E
Sbjct: 344 LIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEE 403
Query: 554 R 554
R
Sbjct: 404 R 404
Score = 134 (52.2 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 36/115 (31%), Positives = 63/115 (54%)
Query: 236 FSKD-IESHAENKTSIDERH--LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTS 292
FSK+ +E + I++ S L+ +L+PF+LRR+K +V EL K E+++Y +++
Sbjct: 227 FSKEQVEDFVQRYQDIEKESESASELYKLLQPFLLRRVKAEVATELPRKTEVVIYHGMSA 286
Query: 293 RQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
QK Y A+ K DL + +++ + L N++ Q RK +HP LF+
Sbjct: 287 LQKKYYKAILMK----DLDAFEN----EMAKKV--KLQNVLSQLRKCVDHPYLFD 331
Score = 41 (19.5 bits), Expect = 4.5e-51, Sum P(3) = 4.5e-51
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 360 EDYHRLYRGRQMEREEGTILPEFPHV 385
+DY YRG ER +G++ E H+
Sbjct: 382 QDYLD-YRGYSYERVDGSVRGEERHL 406
Score = 39 (18.8 bits), Expect = 4.5e-51, Sum P(3) = 4.5e-51
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 421 IEDLIHSSSGGSIQLSNNI 439
+E++++ + +QL+N I
Sbjct: 476 VEEIVYRKAASKLQLTNTI 494
Score = 39 (18.8 bits), Expect = 9.3e-49, Sum P(2) = 9.3e-49
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 307 IEDLIHSSSGGSIQLSNNI 325
+E++++ + +QL+N I
Sbjct: 476 VEEIVYRKAASKLQLTNTI 494
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 636 (228.9 bits), Expect = 6.1e-61, P = 6.1e-61
Identities = 126/348 (36%), Positives = 211/348 (60%)
Query: 6 HAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILA 65
++++ + SQ + + + + VE+ L G LKHYQL+G+ W+ +LY+ +NGILA
Sbjct: 663 YSMQYSARGSQSYYTVAHAITERVEKQSSLLINGTLKHYQLQGLEWMVSLYNNNLNGILA 722
Query: 66 DEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSP 125
DEMGLGKT+Q+IA + ++ E + GP+LII P STL NW E +++ P + Y G+P
Sbjct: 723 DEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTP 782
Query: 126 QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSS 185
R+ L + L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+
Sbjct: 783 AMRRSL-----VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHC 835
Query: 186 MRWKLL-LGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHA 244
++L + R+LL+GTP+QN + ELWALL+F++P++F S F +WF+
Sbjct: 836 KLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG 895
Query: 245 ENKTSIDERH----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSA 300
E + ++E + RLH +L+PF+LRR+KK+VE++L +K+E ++ C +++ QK+LY
Sbjct: 896 E-RVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH 954
Query: 301 LKKK-IKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
++ K I + D G A LMN +MQ RK+CNHP +F+
Sbjct: 955 MQAKGILLTDGSEKDKKGK-----GGAKTLMNTIMQLRKICNHPYMFQ 997
Score = 198 (74.8 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 47/174 (27%), Positives = 91/174 (52%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + A LMN +MQ R
Sbjct: 932 LPEKVEYVIKCDMSALQKI----LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLR 987
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L + ++ + L +GK +LD +L +L
Sbjct: 988 KICNHPYMFQH----------IEESFAEHLGYSNGVI-NGAELYRASGKFELLDRILPKL 1036
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM---FAVPG 562
+A+ HRVL++ QMT ++ ++E++ +R + ++RLDG++K +R + F PG
Sbjct: 1037 RATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1090
Score = 38 (18.4 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 319 IQLSNNIASNLMNLVMQFRKVCNHPELFERRDAK 352
+Q ++ +NL NLV + ++ E +RR K
Sbjct: 503 LQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRK 536
Score = 37 (18.1 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 11/59 (18%), Positives = 26/59 (44%)
Query: 199 RLLLSGTPIQNSMAELWALLH--FIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHL 255
++LL + S + W ++ + + DS DE + ++ + ++ DE+ L
Sbjct: 577 KVLLGPEAPKASQLDAWLEMNPGYEVAPRSDSEDESGSEYEEEDDEEESSRLEADEKIL 635
>MGI|MGI:1276124 [details] [associations]
symbol:Ep400 "E1A binding protein p400" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0035267 "NuA4 histone acetyltransferase complex"
evidence=ISO] [GO:0043967 "histone H4 acetylation" evidence=ISO]
[GO:0043968 "histone H2A acetylation" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1276124 GO:GO:0005524 GO:GO:0003677
GO:GO:0016607 GO:GO:0003682 GO:GO:0035267 GO:GO:0043968
GO:GO:0043967 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GeneTree:ENSGT00530000063427 KO:K11320 CTD:57634 HOVERGEN:HBG051488
OMA:MQKQKLQ OrthoDB:EOG4RBQHQ ChiTaRS:EP400 EMBL:AB092694
EMBL:AB092695 EMBL:AC161348 EMBL:AK006168 EMBL:AK030095
EMBL:AK037693 EMBL:AK046892 EMBL:AK163566 EMBL:AK164049
EMBL:AK122517 EMBL:BC022153 EMBL:BC085511 IPI:IPI00229659
IPI:IPI00404291 IPI:IPI00480329 IPI:IPI00720144 IPI:IPI01008391
RefSeq:NP_083613.2 RefSeq:NP_775089.1 UniGene:Mm.270487
ProteinModelPortal:Q8CHI8 IntAct:Q8CHI8 STRING:Q8CHI8
PhosphoSite:Q8CHI8 PaxDb:Q8CHI8 PRIDE:Q8CHI8
Ensembl:ENSMUST00000041558 Ensembl:ENSMUST00000112435
Ensembl:ENSMUST00000112436 GeneID:75560 KEGG:mmu:75560
UCSC:uc008yrf.1 UCSC:uc008yrg.1 UCSC:uc008yrh.1 InParanoid:Q8CHI8
Bgee:Q8CHI8 CleanEx:MM_EP400 Genevestigator:Q8CHI8
GermOnline:ENSMUSG00000029505 Uniprot:Q8CHI8
Length = 3072
Score = 512 (185.3 bits), Expect = 7.6e-61, Sum P(3) = 7.6e-61
Identities = 104/288 (36%), Positives = 165/288 (57%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
+T V+ P L G L+ YQ G++WLA LY + +NGILADE GLGKTVQ IAF H+A
Sbjct: 1075 TTAVKFSAPSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLAC 1134
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP L++ + + W+ E++R+ P K + Y GS +E K RQ W T+
Sbjct: 1135 NEGNWGPHLVVMRSCNILKWELELKRWCPGLKTLSYVGSHRELKAKRQEW------TEPN 1188
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
+FH+ ITSY+ + F+R+ W+ L++DE Q +K + W+ + + RLLL
Sbjct: 1189 NFHICITSYKQFFRGYTAFSRVHWKCLVVDEMQRVKGMTERHWEAIFKLQSQQRLLLIDV 1248
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+ N+ ELW ++HF++P + + S +++ E + + RLH + +PF
Sbjct: 1249 PLHNTFLELWTMVHFLIPGIS------RPYLSFPLKAPNEENQDYYHKMVIRLHRVTQPF 1302
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHS 313
+LRR K+DVE +L+ K E ++ C L+SRQK LY + + + ++ + S
Sbjct: 1303 ILRRTKRDVEKQLTRKYEHVLKCRLSSRQKALYEDVILQPRTQEALKS 1350
Score = 303 (111.7 bits), Expect = 2.7e-31, Sum P(2) = 2.7e-31
Identities = 65/208 (31%), Positives = 113/208 (54%)
Query: 142 TKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLL 201
T+ +FH+ ITSY+ + F+R+ W+ L++DE Q +K + W+ + + RLL
Sbjct: 1185 TEPNNFHICITSYKQFFRGYTAFSRVHWKCLVVDEMQRVKGMTERHWEAIFKLQSQQRLL 1244
Query: 202 LSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMI 261
L P+ N+ ELW ++HF++P + + S +++ E + + RLH +
Sbjct: 1245 LIDVPLHNTFLELWTMVHFLIPGIS------RPYLSFPLKAPNEENQDYYHKMVIRLHRV 1298
Query: 262 LKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQL 321
+PF+LRR K+DVE +L+ K E ++ C L+SRQK LY ED+I
Sbjct: 1299 TQPFILRRTKRDVEKQLTRKYEHVLKCRLSSRQKALY---------EDVILQPRTQEALK 1349
Query: 322 SNNIASNLMNLVMQFRKVCNHPELFERR 349
S + S +++++ + +++CNHP L E R
Sbjct: 1350 SGHFVS-VLSVLTRLQRICNHPGLVEPR 1376
Score = 134 (52.2 bits), Expect = 7.6e-61, Sum P(3) = 7.6e-61
Identities = 27/68 (39%), Positives = 47/68 (69%)
Query: 491 KLTLV-YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSS 549
+L LV +D+GKL L LL++LK+ G RVL+ SQM M+D+LE F+ + ++R+D ++
Sbjct: 1805 ELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYVRIDENA 1864
Query: 550 KISERRDM 557
+R+++
Sbjct: 1865 NSEQRQEL 1872
Score = 59 (25.8 bits), Expect = 7.6e-61, Sum P(3) = 7.6e-61
Identities = 16/67 (23%), Positives = 31/67 (46%)
Query: 416 KKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCED 475
++K ED+I S + S +++++ + +++CNHP L E R + A
Sbjct: 1330 RQKALYEDVILQPRTQEALKSGHFVS-VLSVLTRLQRICNHPGLVEPRVPGSSFAAGSLQ 1388
Query: 476 YVIPKLV 482
Y L+
Sbjct: 1389 YKSASLI 1395
Score = 42 (19.8 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 370 QMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPAL 415
+M++++ + P+ P P+ PQQP + V + Q SP L
Sbjct: 2730 KMQKQKMQLPPQ-PPPPQAQPGPPQQPAQVQVQTPQPPQQQQSPQL 2774
>ZFIN|ZDB-GENE-030131-497 [details] [associations]
symbol:chd9 "chromodomain helicase DNA binding
protein 9" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-030131-497
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
EMBL:CR318585 EMBL:CU464124 EMBL:FP015866 IPI:IPI00972236
Ensembl:ENSDART00000027807 Bgee:E7F7W5 Uniprot:E7F7W5
Length = 2948
Score = 461 (167.3 bits), Expect = 8.3e-61, Sum P(2) = 8.3e-61
Identities = 116/306 (37%), Positives = 181/306 (59%)
Query: 8 VEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLA-NLYDQGINGILAD 66
++ K + + S ++E+ + +L+ YQL+G+NWL N Y++ N ILAD
Sbjct: 880 LQAAKPHTNRMERPPASHWKKLEKSRKYCNENSLRDYQLEGVNWLLFNWYNRR-NCILAD 938
Query: 67 EMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQ 126
EMGLGKT+QSI FL I T + GPFLII+P ST+ NW++E + V+ Y GS
Sbjct: 939 EMGLGKTIQSITFLEEIYRT-GIKGPFLIIAPLSTIANWEREFRTWT-HLNVIVYHGSVV 996
Query: 127 ERKILRQFW----DMKNLHTKDA-SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIK 181
R++L+Q+ D + + A F VIT++++++ N I W+ +I+DEA +K
Sbjct: 997 SRQMLQQYEMYCRDSQGRVIRGAYRFQAVITTFEMILGGCPELNAIDWRCVIIDEAHRLK 1056
Query: 182 SSSSMRWKLLLGF---SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSK 238
+ + KLL GF S +++LL+GTP+QN++ EL++LLHF+ P+ F S + F + F
Sbjct: 1057 NKNC---KLLEGFKLMSLEHKVLLTGTPLQNTVEELFSLLHFLEPTRFPSENTFMQEFG- 1112
Query: 239 DIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
D+ KT E + +L ILKP MLRR+K+DVE +L+ K E ++ LT+ QK Y
Sbjct: 1113 DL------KT---EEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYY 1163
Query: 299 SALKKK 304
A+ +K
Sbjct: 1164 RAILEK 1169
Score = 214 (80.4 bits), Expect = 8.3e-61, Sum P(2) = 8.3e-61
Identities = 46/124 (37%), Positives = 77/124 (62%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALL-CHKLTLVYDAGK 500
NL+N +M+ RK CNHP L + + K ED+ K V+ A + H ++ AGK
Sbjct: 1185 NLLNTMMELRKCCNHPYLIKGAEEKI-----MEDF---KEVYSPAAVDFHLQAMIQSAGK 1236
Query: 501 LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DM 557
L ++D LL ++KA GH+VL++SQM + +D+LE++++ R+Y + R+DG + + R+ D
Sbjct: 1237 LVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDR 1296
Query: 558 FAVP 561
F+ P
Sbjct: 1297 FSKP 1300
Score = 158 (60.7 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 41/115 (35%), Positives = 62/115 (53%)
Query: 252 ERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLI 311
E + +L ILKP MLRR+K+DVE +L+ K E ++ LT+ QK Y A+ +K +
Sbjct: 1117 EEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEK----NFS 1172
Query: 312 HSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLY 366
+ G N+ NL+N +M+ RK CNHP L + + K ED+ +Y
Sbjct: 1173 FLAKGAG---QANVP-NLLNTMMELRKCCNHPYLIKGAEEKI-----MEDFKEVY 1218
Score = 41 (19.5 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASN 328
+T +QK L +++ + E S S GS S++ +S+
Sbjct: 2183 ITRKQKKLSKRSRREARRESRSDSDSDGSSSSSSSSSSS 2221
Score = 39 (18.8 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 54 NLYDQGINGILADEMGLGKTVQSI 77
N++ G++G++ D+ G S+
Sbjct: 13 NIFGGGLDGLVQDDSGFNPGTVSL 36
Score = 38 (18.4 bits), Expect = 2.7e-42, Sum P(2) = 2.7e-42
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 309 DLIHSSSGGSIQ-LSNNIASNLMNLVMQFRK----VCNHPELFE 347
D++ SS +IQ ++ AS + V RK V HP+L+E
Sbjct: 1975 DMVDSSL--AIQPITEERASRTLYRVELLRKIREQVLRHPQLYE 2016
Score = 38 (18.4 bits), Expect = 2.7e-42, Sum P(2) = 2.7e-42
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 423 DLIHSSSGGSIQ-LSNNIASNLMNLVMQFRK----VCNHPELFE 461
D++ SS +IQ ++ AS + V RK V HP+L+E
Sbjct: 1975 DMVDSSL--AIQPITEERASRTLYRVELLRKIREQVLRHPQLYE 2016
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 461 (167.3 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 121/304 (39%), Positives = 179/304 (58%)
Query: 39 GN-LKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96
GN L+ YQL+G+NWL N Y++ N ILADEMGLGKT+QSI FL I T + GPFLII
Sbjct: 383 GNQLREYQLEGLNWLLFNWYNRR-NCILADEMGLGKTIQSITFLYEILLT-GIRGPFLII 440
Query: 97 SPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWDMKNLHTKDA-SFHVVI 151
+P ST+ NW++E + D VV Y GS R++++Q F D + + A F +I
Sbjct: 441 APLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAII 499
Query: 152 TSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRN---RLLLSGTPIQ 208
T++++++ N I+W+ +I+DEA +K+ + KLL G N ++LL+GTP+Q
Sbjct: 500 TTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNC---KLLEGLKLMNLEHKVLLTGTPLQ 556
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLR 268
N++ EL++LLHF+ P F S F + F D+ KT E + +L ILKP MLR
Sbjct: 557 NTVEELFSLLHFLEPLRFPSESTFMQEFG-DL------KT---EEQVQKLQAILKPMMLR 606
Query: 269 RIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASN 328
R+K+DVE +L+ K E ++ LT+ QK Y A+ +K L S G + N + +
Sbjct: 607 RLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEK-NFSFL--SKGAGQTNVPN-LVNT 662
Query: 329 LMNL 332
+M L
Sbjct: 663 MMEL 666
Score = 200 (75.5 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 43/123 (34%), Positives = 74/123 (60%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + + K + D P A H ++ AGKL
Sbjct: 658 NLVNTMMELRKCCNHPYLIKGAEEK--ILGEFRDTYNPA-----ASDFHLQAMIQSAGKL 710
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL ++KA GH+VL++SQM + +D+LE+++++++Y + R+DG + + R+ D F
Sbjct: 711 VLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRF 770
Query: 559 AVP 561
+ P
Sbjct: 771 SKP 773
>UNIPROTKB|F1MLB1 [details] [associations]
symbol:F1MLB1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043968 "histone H2A acetylation" evidence=IEA]
[GO:0043967 "histone H4 acetylation" evidence=IEA] [GO:0035267
"NuA4 histone acetyltransferase complex" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 PROSITE:PS51194 SMART:SM00717
GO:GO:0005524 GO:GO:0003677 GO:GO:0016607 GO:GO:0003682
GO:GO:0035267 GO:GO:0043968 GO:GO:0043967 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR017877
PROSITE:PS50090 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:MQKQKLQ EMBL:DAAA02044957
EMBL:DAAA02044956 IPI:IPI01018591 Ensembl:ENSBTAT00000027216
Uniprot:F1MLB1
Length = 3137
Score = 510 (184.6 bits), Expect = 2.7e-60, Sum P(3) = 2.7e-60
Identities = 108/275 (39%), Positives = 159/275 (57%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
ST V+ P L G L+ YQ G++WLA LY + +NGILADE GLGKTVQ IAF H+A
Sbjct: 1074 STAVKLNAPALLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLAC 1133
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP L+I + + W+ E++R+ P K + Y GS +E K RQ W T+
Sbjct: 1134 NEGNWGPHLVIVRSCNILKWELELKRWCPGLKTLLYVGSHRELKAKRQEW------TEPN 1187
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
SF++ ITSY+ F F R++W+ L++DE Q +K + W+ + + RLLL
Sbjct: 1188 SFNICITSYKQFFKGFASFTRVRWKCLVIDEMQRVKGMTERHWEAVFTLQSQQRLLLIDA 1247
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH--LSRLHMILK 263
P+ N+ ELW ++HF++P + + F A N+ + D H + RLH + +
Sbjct: 1248 PLHNTFLELWTMVHFLIPGISRPYLHF--------PLKAPNEENQDYYHKVVIRLHRVTQ 1299
Query: 264 PFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
PF+LRR K+DVE +L+ K E ++ C L++RQK LY
Sbjct: 1300 PFILRRTKRDVEKQLTKKYEHVLKCRLSNRQKALY 1334
Score = 300 (110.7 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 67/210 (31%), Positives = 115/210 (54%)
Query: 142 TKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLL 201
T+ SF++ ITSY+ F F R++W+ L++DE Q +K + W+ + + RLL
Sbjct: 1184 TEPNSFNICITSYKQFFKGFASFTRVRWKCLVIDEMQRVKGMTERHWEAVFTLQSQQRLL 1243
Query: 202 LSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH--LSRLH 259
L P+ N+ ELW ++HF++P + + F A N+ + D H + RLH
Sbjct: 1244 LIDAPLHNTFLELWTMVHFLIPGISRPYLHF--------PLKAPNEENQDYYHKVVIRLH 1295
Query: 260 MILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSI 319
+ +PF+LRR K+DVE +L+ K E ++ C L++RQK LY ED+I G
Sbjct: 1296 RVTQPFILRRTKRDVEKQLTKKYEHVLKCRLSNRQKALY---------EDVI-LQPGTQE 1345
Query: 320 QLSNNIASNLMNLVMQFRKVCNHPELFERR 349
L + ++++++++ +++CNHP L R
Sbjct: 1346 ALKSGHFVDVLSILLRLQRICNHPGLVAPR 1375
Score = 134 (52.2 bits), Expect = 2.7e-60, Sum P(3) = 2.7e-60
Identities = 27/68 (39%), Positives = 47/68 (69%)
Query: 491 KLTLV-YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSS 549
+L LV +D+GKL L LL++LK+ G RVL+ SQM M+D+LE F+ + ++R+D ++
Sbjct: 1888 ELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYIRIDENA 1947
Query: 550 KISERRDM 557
+R+++
Sbjct: 1948 NSEQRQEL 1955
Score = 56 (24.8 bits), Expect = 2.7e-60, Sum P(3) = 2.7e-60
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 416 KKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 463
++K ED+I G L + ++++++++ +++CNHP L R
Sbjct: 1329 RQKALYEDVI-LQPGTQEALKSGHFVDVLSILLRLQRICNHPGLVAPR 1375
>POMBASE|SPCC1235.05c [details] [associations]
symbol:fft2 "fun thirty related protein Fft2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM;ISS] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0051276 "chromosome organization" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1235.05c GO:GO:0005829
GO:GO:0005524 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 OrthoDB:EOG4BCHW4 PIR:T40879 RefSeq:NP_587731.1
ProteinModelPortal:O74842 STRING:O74842 EnsemblFungi:SPCC1235.05c.1
GeneID:2539045 KEGG:spo:SPCC1235.05c KO:K14439 NextBio:20800219
Uniprot:O74842
Length = 1284
Score = 510 (184.6 bits), Expect = 4.3e-60, Sum P(2) = 4.3e-60
Identities = 122/339 (35%), Positives = 194/339 (57%)
Query: 20 STTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAF 79
S P F TE +P+ LK YQL G+NWL LY Q ++GILADEMGLGKT Q +AF
Sbjct: 531 SDFPKFVTE--QPKTLASDVQLKSYQLVGVNWLHLLYQQKLSGILADEMGLGKTCQVVAF 588
Query: 80 LCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKN 139
+ E GP L++ P+STL NW +E+ RF P +V PY+GS QER +R+
Sbjct: 589 FALLLEQGH-HGPHLVVVPSSTLENWLRELARFCPSLRVEPYYGSQQERANIREA----- 642
Query: 140 LHTKDASFHVVITSYQLVVS---DFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSC 196
+ + + +++T+YQL + D + + + DE +K+ S R+K L+ +
Sbjct: 643 IEENEIKYDILVTTYQLATNNKEDRSFLKHQNFDVCVYDEGHYLKNRMSERYKHLMNLNA 702
Query: 197 RNRLLLSGTPIQNSMAELWALLHFIMPSMFDSH-DEFNEWFSKDIESHAE-NKTSIDERH 254
RLLL+GTP+QN++ EL +LL FI+P+MFDS D+ + F + A+ + + ++
Sbjct: 703 NFRLLLTGTPLQNNLKELVSLLAFILPNMFDSDMDDLDVIFKAKPTADADIEQALLSKQR 762
Query: 255 LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYS---ALKK--KIKIED 309
+SR ++ PF+LRR K V N+L K +I+ +C L+ Q +Y+ AL+K +++ +D
Sbjct: 763 ISRAKTMMTPFVLRRRKNQVLNDLPKKTQIIEHCKLSENQLEIYNRYAALQKNQQLRRDD 822
Query: 310 LIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFER 348
+ S + S+ + + +++MQ RK NH LF +
Sbjct: 823 KRNKRSKNDEE-SDGKSLSAGHVLMQLRKAANHALLFRK 860
Score = 147 (56.8 bits), Expect = 4.3e-60, Sum P(2) = 4.3e-60
Identities = 26/61 (42%), Positives = 46/61 (75%)
Query: 497 DAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRD 556
D+GK+ VL +LL ++K G R+L++SQ T+M+D+LE+ + K ++RLDGS+++ R+D
Sbjct: 922 DSGKIRVLKELLPKMKEEGSRILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVRQD 981
Query: 557 M 557
+
Sbjct: 982 I 982
Score = 51 (23.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 71/378 (18%), Positives = 152/378 (40%)
Query: 104 NWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLV-VSDFK 162
+W ++E + +V P E F K + V + SYQLV V+
Sbjct: 503 SWGIKLEMSNGELNIVDMESVPTEAADNSDFPKFVTEQPKTLASDVQLKSYQLVGVNWLH 562
Query: 163 YFNRIKWQYLILDEAQAIKSSSSMRWKLLL---GFSCRNRLLLSGTPIQNSMAELWALLH 219
+ K ++ DE K+ + + LL G + +++ + ++N + EL
Sbjct: 563 LLYQQKLSGILADEMGLGKTCQVVAFFALLLEQGHHGPHLVVVPSSTLENWLREL---AR 619
Query: 220 FIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELS 279
F PS+ ++ E A + +I+E + + +++ + L K+ + L
Sbjct: 620 FC-PSL-----RVEPYYGSQQE-RANIREAIEENEI-KYDILVTTYQLATNNKEDRSFLK 671
Query: 280 DK-IEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNN-IASNLMNLVMQFR 337
+ ++ VY L + + ++ K L++ ++ + L+ + +NL LV
Sbjct: 672 HQNFDVCVY----DEGHYLKNRMSERYK--HLMNLNANFRLLLTGTPLQNNLKELVSLLA 725
Query: 338 KVCNHPELFERR----DA--KAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVI 391
+ P +F+ D KA + L +++ R + + P ++ V+
Sbjct: 726 FIL--PNMFDSDMDDLDVIFKAKPTADADIEQALLSKQRISRAKTMMTPFVLRRRKNQVL 783
Query: 392 --LPQQPTYLPVCFFESTQNMVS---PALKK--KIKIEDLIHSSSGGSIQLSNNIASNLM 444
LP++ + C Q + AL+K +++ +D + S + S+ + +
Sbjct: 784 NDLPKKTQIIEHCKLSENQLEIYNRYAALQKNQQLRRDDKRNKRSKNDEE-SDGKSLSAG 842
Query: 445 NLVMQFRKVCNHPELFER 462
+++MQ RK NH LF +
Sbjct: 843 HVLMQLRKAANHALLFRK 860
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 617 (222.3 bits), Expect = 4.6e-60, Sum P(2) = 4.6e-60
Identities = 126/338 (37%), Positives = 202/338 (59%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
Q + + + + V++ + G LK YQ+KG+ WL +LY+ +NGILADEMGLGKT+Q
Sbjct: 528 QSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQ 587
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
+IA + ++ E + GPFLII P STL NW E +++ P V Y GSP R R F
Sbjct: 588 TIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR---RAF- 643
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLL-LGF 194
+ L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+ ++L +
Sbjct: 644 -VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 700
Query: 195 SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH 254
RLLL+GTP+QN + ELWALL+F++P++F S F +WF+ E K ++E
Sbjct: 701 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE-KVDLNEEE 759
Query: 255 ----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK-IKIED 309
+ RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++ Q++LY ++ K + + D
Sbjct: 760 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 819
Query: 310 LIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
G LMN +MQ RK+CNHP +F+
Sbjct: 820 GSEKDKKGK-----GGTKTLMNTIMQLRKICNHPYMFQ 852
Score = 199 (75.1 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 45/163 (27%), Positives = 87/163 (53%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + LMN +MQ R
Sbjct: 787 LPEKVEYVIKCDMSALQRV----LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 842
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L F ++ L L +GK +LD +L +L
Sbjct: 843 KICNHPYMFQH----------IEESFSEHLGFTGGIV-QGLDLYRASGKFELLDRILPKL 891
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISER 554
+A+ H+VL++ QMT ++ ++E++ YR ++++RLDG++K +R
Sbjct: 892 RATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 934
Score = 44 (20.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 19/85 (22%), Positives = 36/85 (42%)
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 349
L R+ L + + +I+ + + S G ++ I + L+ R++ + RR
Sbjct: 166 LQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRR 225
Query: 350 DAKAPLAMSCEDYHRLYRGRQMERE 374
D A++ + Y R RQ RE
Sbjct: 226 DTALETALNAKAYKR--SKRQSLRE 248
Score = 37 (18.1 bits), Expect = 4.6e-60, Sum P(2) = 4.6e-60
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 15 SQQFGSTTPSFSTEVERPQP 34
S++ GS E E+PQP
Sbjct: 456 SEESGSEEEEEEEEEEQPQP 475
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 628 (226.1 bits), Expect = 4.7e-60, P = 4.7e-60
Identities = 125/348 (35%), Positives = 209/348 (60%)
Query: 6 HAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILA 65
++++ + SQ + + + S VE+ L G LKHYQL+G+ W+ +LY+ +NGILA
Sbjct: 696 YSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILA 755
Query: 66 DEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSP 125
DEMG GKT+Q+IA + ++ E + GP+LII P STL NW E +++ P + Y G+P
Sbjct: 756 DEMGPGKTIQTIALITYLMEHKGLNGPYLIIVPLSTLSNWTYEFDKWAPSAVKISYKGTP 815
Query: 126 QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSS 185
R+ L + L + F+ ++T+Y+ ++ D +I+W+Y+I+DE +K+
Sbjct: 816 AMRRSL-----VPQL--RSGKFNALLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHC 868
Query: 186 MRWKLL-LGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHA 244
++L + R+LL+GTP+QN + ELWALL+F++P++F S F +WF+
Sbjct: 869 KLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG 928
Query: 245 ENKTSIDERH----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSA 300
E + ++E + RLH +L+PF+LRR+KK+VE++L +K+E ++ C +++ QK+LY
Sbjct: 929 E-RVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH 987
Query: 301 LKKK-IKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
++ K I + D G A LMN +MQ RK+CNHP +F+
Sbjct: 988 MQAKGILLTDGSEKDKKGK-----GGAKTLMNTIMQLRKICNHPYMFQ 1030
Score = 198 (74.8 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 47/174 (27%), Positives = 91/174 (52%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + A LMN +MQ R
Sbjct: 965 LPEKVEYVIKCDMSALQKI----LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLR 1020
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L + ++ + L +GK +LD +L +L
Sbjct: 1021 KICNHPYMFQH----------IEESFAEHLGYSNGVI-NGAELYRASGKFELLDRILPKL 1069
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM---FAVPG 562
+A+ HRVL++ QMT ++ ++E++ +R + ++RLDG++K +R + F PG
Sbjct: 1070 RATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1123
>UNIPROTKB|E1BDZ3 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:DAAA02046444
IPI:IPI00705152 Ensembl:ENSBTAT00000002955 Uniprot:E1BDZ3
Length = 2900
Score = 467 (169.5 bits), Expect = 5.5e-60, Sum P(2) = 5.5e-60
Identities = 128/350 (36%), Positives = 200/350 (57%)
Query: 4 VRHAVEVEK-QRSQQFGSTTPSFSTEVERPQPGLFR----------GN-LKHYQLKGMNW 51
++ V++ K + +Q ++ P + ++RP P +++ GN L+ YQL+G+NW
Sbjct: 813 LKEDVDLAKIEEFEQLQASRPD-TRHLDRPPPNIWKKIDQSRDYKNGNQLREYQLEGLNW 871
Query: 52 LA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEME 110
L N Y++ N ILADEMGLGKT+QSI FL I T + GPFLII+P ST+ NW++E
Sbjct: 872 LLFNWYNRR-NCILADEMGLGKTIQSITFLYEILLT-GIRGPFLIIAPLSTIANWEREFR 929
Query: 111 RFVPDFKVVPYWGSPQERKILRQ----FWDMKNLHTKDA-SFHVVITSYQLVVSDFKYFN 165
+ D VV Y GS R++++Q F D + + A F +IT++++++ N
Sbjct: 930 TWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELN 988
Query: 166 RIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRN---RLLLSGTPIQNSMAELWALLHFIM 222
I+W+ +I+DEA +K+ + KLL G N ++LL+GTP+QN++ EL++LLHF+
Sbjct: 989 AIEWRCVIIDEAHRLKNKNC---KLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLE 1045
Query: 223 PSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKI 282
P F S F + F D+ KT E + +L ILKP MLRR+K+DVE +L+ K
Sbjct: 1046 PLRFPSESTFMQEFG-DL------KT---EEQVQKLQAILKPMMLRRLKEDVEKKLAPKE 1095
Query: 283 EIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNL 332
E ++ LT+ QK Y A+ +K L S G + N + + +M L
Sbjct: 1096 ETIIEVELTNIQKKYYRAILEK-NFSFL--SKGAGQTNVPN-LVNTMMEL 1141
Score = 200 (75.5 bits), Expect = 5.5e-60, Sum P(2) = 5.5e-60
Identities = 43/123 (34%), Positives = 74/123 (60%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + + K + D P A H ++ AGKL
Sbjct: 1133 NLVNTMMELRKCCNHPYLIKGAEEK--ILGEFRDTYNPA-----ASDFHLQAMIQSAGKL 1185
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL ++KA GH+VL++SQM + +D+LE+++++++Y + R+DG + + R+ D F
Sbjct: 1186 VLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRF 1245
Query: 559 AVP 561
+ P
Sbjct: 1246 SKP 1248
Score = 42 (19.8 bits), Expect = 2.3e-43, Sum P(2) = 2.3e-43
Identities = 26/93 (27%), Positives = 40/93 (43%)
Query: 308 EDLIHSSSGGSIQ-LSNNIASNLMNLVMQFRKV----CNHPELFERR-----DAKAPLAM 357
E+L+ S IQ ++ AS + + RKV HP+LFER + P+
Sbjct: 1905 EELVDPSI--FIQPITEERASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPVWW 1962
Query: 358 SCEDYHR-LYRGRQMEREEGTILPEFPHVPRDP 389
C + R L G + G ++ H+ RDP
Sbjct: 1963 ECGSHDRDLLIGAA---KHGVSRTDY-HILRDP 1991
Score = 41 (19.5 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 405 ESTQNMVSPALKKKIKIEDLIHSS 428
ESTQ+M++P ++HSS
Sbjct: 322 ESTQHMLNPNTSLNSNNFQMLHSS 345
Score = 40 (19.1 bits), Expect = 3.7e-43, Sum P(2) = 3.7e-43
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 422 EDLIHSSSGGSIQ-LSNNIASNLMNLVMQFRKV----CNHPELFER 462
E+L+ S IQ ++ AS + + RKV HP+LFER
Sbjct: 1905 EELVDPSI--FIQPITEERASRTLYRIELLRKVREQALRHPQLFER 1948
>UNIPROTKB|I3L7Y4 [details] [associations]
symbol:EP400 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS51194 SMART:SM00717 GO:GO:0005524
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GeneTree:ENSGT00530000063427 EMBL:CU469318 EMBL:CU469455
Ensembl:ENSSSCT00000027939 Uniprot:I3L7Y4
Length = 2789
Score = 501 (181.4 bits), Expect = 7.5e-60, Sum P(3) = 7.5e-60
Identities = 104/273 (38%), Positives = 156/273 (57%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
ST V+ P L G L+ YQ G++WLA LY + +NGILADE GLGKTVQ IAF H+A
Sbjct: 1066 STGVKLTAPALLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLAC 1125
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP L+I + + W+ E++R+ P K + Y GS +E K RQ W N
Sbjct: 1126 NEGNWGPHLVIVRSCNILKWELELKRWCPGLKTLLYVGSHRELKAKRQEWSEPN------ 1179
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
SF++ ITSY+ F R +W+ L++DE Q +K + W+ + + RLLL
Sbjct: 1180 SFNICITSYKQFFRGHASFPRARWKCLVIDEMQRVKGMTERHWEAVFALQSQQRLLLIDA 1239
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+ N+ ELW ++HF++P + + F +++ +E + + RLH + +PF
Sbjct: 1240 PLHNTFLELWTMVHFLIPGISRPYLHF------PLKAPSEENQDYYHKVVIRLHRVTQPF 1293
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
+LRR K+DVE +L+ K E ++ C L++RQK LY
Sbjct: 1294 ILRRTKRDVEKQLTKKYEHVLKCRLSNRQKALY 1326
Score = 294 (108.6 bits), Expect = 4.5e-30, Sum P(2) = 4.5e-30
Identities = 63/204 (30%), Positives = 112/204 (54%)
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
SF++ ITSY+ F R +W+ L++DE Q +K + W+ + + RLLL
Sbjct: 1180 SFNICITSYKQFFRGHASFPRARWKCLVIDEMQRVKGMTERHWEAVFALQSQQRLLLIDA 1239
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+ N+ ELW ++HF++P + + F +++ +E + + RLH + +PF
Sbjct: 1240 PLHNTFLELWTMVHFLIPGISRPYLHF------PLKAPSEENQDYYHKVVIRLHRVTQPF 1293
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR K+DVE +L+ K E ++ C L++RQK LY ED+I G L +
Sbjct: 1294 ILRRTKRDVEKQLTKKYEHVLKCRLSNRQKALY---------EDVI-LQPGTQEALKSGH 1343
Query: 326 ASNLMNLVMQFRKVCNHPELFERR 349
++++++++ +++CNHP L E R
Sbjct: 1344 FVDVLSILLRLQRICNHPGLVEPR 1367
Score = 131 (51.2 bits), Expect = 7.5e-60, Sum P(3) = 7.5e-60
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 491 KLTLV-YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSS 549
+L LV +D+GKL L LL++L++ G RVL+ SQM M+D+LE F+ + ++R+D ++
Sbjct: 1802 ELRLVQFDSGKLEALAVLLQKLRSEGRRVLILSQMVLMLDILEMFLNFHYLTYIRIDENA 1861
Query: 550 KISERRDM 557
+R+++
Sbjct: 1862 NSEQRQEL 1869
Score = 62 (26.9 bits), Expect = 7.5e-60, Sum P(3) = 7.5e-60
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 416 KKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 463
++K ED+I G L + ++++++++ +++CNHP L E R
Sbjct: 1321 RQKALYEDVI-LQPGTQEALKSGHFVDVLSILLRLQRICNHPGLVEPR 1367
Score = 54 (24.1 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 363 HRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLP 400
H+L R R EG P P+ P+ P P P+ P
Sbjct: 12 HQLQRSRAFASSEGEEQPAHPNPPQSPAT-PFAPSASP 48
>UNIPROTKB|I3LPX4 [details] [associations]
symbol:EP400 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043968 "histone H2A acetylation" evidence=IEA]
[GO:0043967 "histone H4 acetylation" evidence=IEA] [GO:0035267
"NuA4 histone acetyltransferase complex" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 PROSITE:PS51194 SMART:SM00717
GO:GO:0005524 GO:GO:0003677 GO:GO:0016607 GO:GO:0003682
GO:GO:0035267 GO:GO:0043968 GO:GO:0043967 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR017877
PROSITE:PS50090 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:MQKQKLQ EMBL:CU469318
EMBL:CU469455 Ensembl:ENSSSCT00000024610 Uniprot:I3LPX4
Length = 2865
Score = 501 (181.4 bits), Expect = 8.3e-60, Sum P(3) = 8.3e-60
Identities = 104/273 (38%), Positives = 156/273 (57%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
ST V+ P L G L+ YQ G++WLA LY + +NGILADE GLGKTVQ IAF H+A
Sbjct: 1069 STGVKLTAPALLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLAC 1128
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP L+I + + W+ E++R+ P K + Y GS +E K RQ W N
Sbjct: 1129 NEGNWGPHLVIVRSCNILKWELELKRWCPGLKTLLYVGSHRELKAKRQEWSEPN------ 1182
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
SF++ ITSY+ F R +W+ L++DE Q +K + W+ + + RLLL
Sbjct: 1183 SFNICITSYKQFFRGHASFPRARWKCLVIDEMQRVKGMTERHWEAVFALQSQQRLLLIDA 1242
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+ N+ ELW ++HF++P + + F +++ +E + + RLH + +PF
Sbjct: 1243 PLHNTFLELWTMVHFLIPGISRPYLHF------PLKAPSEENQDYYHKVVIRLHRVTQPF 1296
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
+LRR K+DVE +L+ K E ++ C L++RQK LY
Sbjct: 1297 ILRRTKRDVEKQLTKKYEHVLKCRLSNRQKALY 1329
Score = 294 (108.6 bits), Expect = 4.8e-30, Sum P(2) = 4.8e-30
Identities = 63/204 (30%), Positives = 112/204 (54%)
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
SF++ ITSY+ F R +W+ L++DE Q +K + W+ + + RLLL
Sbjct: 1183 SFNICITSYKQFFRGHASFPRARWKCLVIDEMQRVKGMTERHWEAVFALQSQQRLLLIDA 1242
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+ N+ ELW ++HF++P + + F +++ +E + + RLH + +PF
Sbjct: 1243 PLHNTFLELWTMVHFLIPGISRPYLHF------PLKAPSEENQDYYHKVVIRLHRVTQPF 1296
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR K+DVE +L+ K E ++ C L++RQK LY ED+I G L +
Sbjct: 1297 ILRRTKRDVEKQLTKKYEHVLKCRLSNRQKALY---------EDVI-LQPGTQEALKSGH 1346
Query: 326 ASNLMNLVMQFRKVCNHPELFERR 349
++++++++ +++CNHP L E R
Sbjct: 1347 FVDVLSILLRLQRICNHPGLVEPR 1370
Score = 131 (51.2 bits), Expect = 8.3e-60, Sum P(3) = 8.3e-60
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 491 KLTLV-YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSS 549
+L LV +D+GKL L LL++L++ G RVL+ SQM M+D+LE F+ + ++R+D ++
Sbjct: 1878 ELRLVQFDSGKLEALAVLLQKLRSEGRRVLILSQMVLMLDILEMFLNFHYLTYIRIDENA 1937
Query: 550 KISERRDM 557
+R+++
Sbjct: 1938 NSEQRQEL 1945
Score = 62 (26.9 bits), Expect = 8.3e-60, Sum P(3) = 8.3e-60
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 416 KKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 463
++K ED+I G L + ++++++++ +++CNHP L E R
Sbjct: 1324 RQKALYEDVI-LQPGTQEALKSGHFVDVLSILLRLQRICNHPGLVEPR 1370
Score = 54 (24.1 bits), Expect = 8.5e-06, Sum P(3) = 8.5e-06
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 363 HRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLP 400
H+L R R EG P P+ P+ P P P+ P
Sbjct: 12 HQLQRSRAFASSEGEEQPAHPNPPQSPAT-PFAPSASP 48
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 617 (222.3 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 126/338 (37%), Positives = 202/338 (59%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
Q + + + + V++ + G LK YQ+KG+ WL +LY+ +NGILADEMGLGKT+Q
Sbjct: 62 QSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQ 121
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
+IA + ++ E + GPFLII P STL NW E +++ P V Y GSP R R F
Sbjct: 122 TIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR---RAF- 177
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLL-LGF 194
+ L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+ ++L +
Sbjct: 178 -VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 234
Query: 195 SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH 254
RLLL+GTP+QN + ELWALL+F++P++F S F +WF+ E K ++E
Sbjct: 235 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE-KVDLNEEE 293
Query: 255 ----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK-IKIED 309
+ RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++ Q++LY ++ K + + D
Sbjct: 294 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 353
Query: 310 LIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
G LMN +MQ RK+CNHP +F+
Sbjct: 354 GSEKDKKGK-----GGTKTLMNTIMQLRKICNHPYMFQ 386
Score = 199 (75.1 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 45/163 (27%), Positives = 87/163 (53%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + LMN +MQ R
Sbjct: 321 LPEKVEYVIKCDMSALQRV----LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 376
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L F ++ L L +GK +LD +L +L
Sbjct: 377 KICNHPYMFQH----------IEESFSEHLGFTGGIV-QGLDLYRASGKFELLDRILPKL 425
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISER 554
+A+ H+VL++ QMT ++ ++E++ YR ++++RLDG++K +R
Sbjct: 426 RATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 468
>DICTYBASE|DDB_G0293012 [details] [associations]
symbol:DDB_G0293012 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000626
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00213 SMART:SM00298
SMART:SM00490 dictyBase:DDB_G0293012 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AAFI02000199 InterPro:IPR022617 Pfam:PF11976
RefSeq:XP_629261.1 ProteinModelPortal:Q54CF8
EnsemblProtists:DDB0220643 GeneID:8628981 KEGG:ddi:DDB_G0293012
InParanoid:Q54CF8 OMA:IMINEDI Uniprot:Q54CF8
Length = 3071
Score = 471 (170.9 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 103/283 (36%), Positives = 172/283 (60%)
Query: 23 PSFSTE-VERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLC 81
P F+ E V + Q L +LK +Q++G WL+ + + +LADEMGLGKT+QSIAFL
Sbjct: 882 PIFNNELVPKFQDNL---SLKEFQVEGFLWLSYCWYHCRSSLLADEMGLGKTIQSIAFLQ 938
Query: 82 HIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLH 141
+++++ + GPFL+++P STL NW +E+ ++ K + ++GS + R + ++ + K H
Sbjct: 939 YLSQSVGIKGPFLVVAPLSTLGNWHKEILKWTK-MKTLVFYGSQETRGFISKY-EFK--H 994
Query: 142 TKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLL 201
F V++T+Y+ ++SD F R+ W+ LILDE IK+ S L + ++
Sbjct: 995 KDTYLFEVLLTTYETIMSDHSSFVRVPWRALILDEGHRIKNDKSKVLSKLKSIKTEHSII 1054
Query: 202 LSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMI 261
L+GTP+QN M ELW +L+F+ P F+S EF + +S D++ +E +S+LH +
Sbjct: 1055 LTGTPLQNDMKELWTMLNFLDPDKFNSCQEFLDEYS-DLK---------EESQVSKLHQL 1104
Query: 262 LKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK 304
L P++LRR+K+DVE + K E ++ L+S QK Y A+ ++
Sbjct: 1105 LSPYLLRRMKEDVELSIPIKEETVIQVELSSTQKTYYRAILER 1147
Score = 193 (73.0 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 52/125 (41%), Positives = 79/125 (63%)
Query: 433 IQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIP--KLVFEEALLCH 490
I+ N+ L N+++Q RKVCNHP L P A E+ ++ K+ +E L
Sbjct: 1156 IKQKTNLPK-LSNIMIQIRKVCNHPFLI-------PGA---EESIVKQEKIAGDEEL--G 1202
Query: 491 KLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
+L LV + KL ++D LL+RLKA GH+VL++SQM + +++LE+++ YR+Y + RLDGS K
Sbjct: 1203 EL-LVKSSSKLVLVDKLLQRLKAEGHQVLIFSQMVESLNILEDYLQYREYTYERLDGSIK 1261
Query: 551 ISERR 555
SE R
Sbjct: 1262 -SEVR 1265
Score = 159 (61.0 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 42/116 (36%), Positives = 70/116 (60%)
Query: 230 DEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCP 289
D+FN + ++ +++ K +E +S+LH +L P++LRR+K+DVE + K E ++
Sbjct: 1077 DKFNSC-QEFLDEYSDLK---EESQVSKLHQLLSPYLLRRMKEDVELSIPIKEETVIQVE 1132
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPEL 345
L+S QK Y A+ ++ + E L S G I+ N+ L N+++Q RKVCNHP L
Sbjct: 1133 LSSTQKTYYRAILERNR-EFL---SRG--IKQKTNLPK-LSNIMIQIRKVCNHPFL 1181
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 611 (220.1 bits), Expect = 1.5e-59, P = 1.5e-59
Identities = 124/318 (38%), Positives = 194/318 (61%)
Query: 36 LFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLI 95
+ G LK YQ+KG+ WL +LY+ +NGILADEMGLGKT+Q+IA + ++ E + GPFLI
Sbjct: 1 MVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLI 60
Query: 96 ISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQ 155
I P STL NW E +++ P V Y GSP R R F + L + F+V++T+Y+
Sbjct: 61 IVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR---RAF--VPQL--RSGKFNVLLTTYE 113
Query: 156 LVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLL-LGFSCRNRLLLSGTPIQNSMAEL 214
++ D +I+W+Y+I+DE +K+ ++L + RLLL+GTP+QN + EL
Sbjct: 114 YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPEL 173
Query: 215 WALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH----LSRLHMILKPFMLRRI 270
WALL+F++P++F S F +WF+ E K ++E + RLH +L+PF+LRR+
Sbjct: 174 WALLNFLLPTIFKSCSTFEQWFNAPFAMTGE-KVDLNEEETILIIRRLHKVLRPFLLRRL 232
Query: 271 KKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK-IKIEDLIHSSSGGSIQLSNNIASNL 329
KK+VE +L +K+E ++ C +++ Q++LY ++ K + + D G L
Sbjct: 233 KKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGK-----GGTKTL 287
Query: 330 MNLVMQFRKVCNHPELFE 347
MN +MQ RK+CNHP +F+
Sbjct: 288 MNTIMQLRKICNHPYMFQ 305
Score = 199 (75.1 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 45/163 (27%), Positives = 87/163 (53%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + LMN +MQ R
Sbjct: 240 LPEKVEYVIKCDMSALQRV----LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 295
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L F ++ L L +GK +LD +L +L
Sbjct: 296 KICNHPYMFQH----------IEESFSEHLGFTGGIV-QGLDLYRASGKFELLDRILPKL 344
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISER 554
+A+ H+VL++ QMT ++ ++E++ YR ++++RLDG++K +R
Sbjct: 345 RATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 387
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 617 (222.3 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 126/338 (37%), Positives = 202/338 (59%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
Q + + + + V++ + G LK YQ+KG+ WL +LY+ +NGILADEMGLGKT+Q
Sbjct: 721 QSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQ 780
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
+IA + ++ E + GPFLII P STL NW E +++ P V Y GSP R R F
Sbjct: 781 TIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR---RAF- 836
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLL-LGF 194
+ L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+ ++L +
Sbjct: 837 -VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 893
Query: 195 SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH 254
RLLL+GTP+QN + ELWALL+F++P++F S F +WF+ E K ++E
Sbjct: 894 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE-KVDLNEEE 952
Query: 255 ----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK-IKIED 309
+ RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++ Q++LY ++ K + + D
Sbjct: 953 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1012
Query: 310 LIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
G LMN +MQ RK+CNHP +F+
Sbjct: 1013 GSEKDKKGK-----GGTKTLMNTIMQLRKICNHPYMFQ 1045
Score = 200 (75.5 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 48/173 (27%), Positives = 91/173 (52%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + LMN +MQ R
Sbjct: 980 LPEKVEYVIKCDMSALQRV----LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1035
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L F ++ L L +GK +LD +L +L
Sbjct: 1036 KICNHPYMFQH----------IEESFSEHLGFTGGIV-QGLDLYRASGKFELLDRILPKL 1084
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM--FAVPG 562
+A+ H+VL++ QMT ++ ++E++ YR ++++RLDG++K +R + F PG
Sbjct: 1085 RATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLTFNEPG 1137
Score = 44 (20.5 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 19/85 (22%), Positives = 36/85 (42%)
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 349
L R+ L + + +I+ + + S G ++ I + L+ R++ + RR
Sbjct: 359 LQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRR 418
Query: 350 DAKAPLAMSCEDYHRLYRGRQMERE 374
D A++ + Y R RQ RE
Sbjct: 419 DTALETALNAKAYKR--SKRQSLRE 441
Score = 37 (18.1 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 15 SQQFGSTTPSFSTEVERPQP 34
S++ GS E E+PQP
Sbjct: 649 SEESGSEEEEEEEEEEQPQP 668
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 617 (222.3 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 126/338 (37%), Positives = 202/338 (59%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
Q + + + + V++ + G LK YQ+KG+ WL +LY+ +NGILADEMGLGKT+Q
Sbjct: 721 QSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQ 780
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
+IA + ++ E + GPFLII P STL NW E +++ P V Y GSP R R F
Sbjct: 781 TIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR---RAF- 836
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLL-LGF 194
+ L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+ ++L +
Sbjct: 837 -VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 893
Query: 195 SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH 254
RLLL+GTP+QN + ELWALL+F++P++F S F +WF+ E K ++E
Sbjct: 894 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE-KVDLNEEE 952
Query: 255 ----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK-IKIED 309
+ RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++ Q++LY ++ K + + D
Sbjct: 953 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1012
Query: 310 LIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
G LMN +MQ RK+CNHP +F+
Sbjct: 1013 GSEKDKKGK-----GGTKTLMNTIMQLRKICNHPYMFQ 1045
Score = 199 (75.1 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 45/163 (27%), Positives = 87/163 (53%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + LMN +MQ R
Sbjct: 980 LPEKVEYVIKCDMSALQRV----LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1035
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L F ++ L L +GK +LD +L +L
Sbjct: 1036 KICNHPYMFQH----------IEESFSEHLGFTGGIV-QGLDLYRASGKFELLDRILPKL 1084
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISER 554
+A+ H+VL++ QMT ++ ++E++ YR ++++RLDG++K +R
Sbjct: 1085 RATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1127
Score = 44 (20.5 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 19/85 (22%), Positives = 36/85 (42%)
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 349
L R+ L + + +I+ + + S G ++ I + L+ R++ + RR
Sbjct: 359 LQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRR 418
Query: 350 DAKAPLAMSCEDYHRLYRGRQMERE 374
D A++ + Y R RQ RE
Sbjct: 419 DTALETALNAKAYKR--SKRQSLRE 441
Score = 37 (18.1 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 15 SQQFGSTTPSFSTEVERPQP 34
S++ GS E E+PQP
Sbjct: 649 SEESGSEEEEEEEEEEQPQP 668
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 617 (222.3 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 126/338 (37%), Positives = 202/338 (59%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
Q + + + + V++ + G LK YQ+KG+ WL +LY+ +NGILADEMGLGKT+Q
Sbjct: 729 QSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQ 788
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
+IA + ++ E + GPFLII P STL NW E +++ P V Y GSP R R F
Sbjct: 789 TIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR---RAF- 844
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLL-LGF 194
+ L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+ ++L +
Sbjct: 845 -VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 901
Query: 195 SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH 254
RLLL+GTP+QN + ELWALL+F++P++F S F +WF+ E K ++E
Sbjct: 902 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE-KVDLNEEE 960
Query: 255 ----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK-IKIED 309
+ RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++ Q++LY ++ K + + D
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 310 LIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
G LMN +MQ RK+CNHP +F+
Sbjct: 1021 GSEKDKKGK-----GGTKTLMNTIMQLRKICNHPYMFQ 1053
Score = 199 (75.1 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 45/163 (27%), Positives = 87/163 (53%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + LMN +MQ R
Sbjct: 988 LPEKVEYVIKCDMSALQRV----LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1043
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L F ++ L L +GK +LD +L +L
Sbjct: 1044 KICNHPYMFQH----------IEESFSEHLGFTGGIV-QGLDLYRASGKFELLDRILPKL 1092
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISER 554
+A+ H+VL++ QMT ++ ++E++ YR ++++RLDG++K +R
Sbjct: 1093 RATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135
Score = 44 (20.5 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 19/85 (22%), Positives = 36/85 (42%)
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 349
L R+ L + + +I+ + + S G ++ I + L+ R++ + RR
Sbjct: 367 LQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRR 426
Query: 350 DAKAPLAMSCEDYHRLYRGRQMERE 374
D A++ + Y R RQ RE
Sbjct: 427 DTALETALNAKAYKR--SKRQSLRE 449
Score = 37 (18.1 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 15 SQQFGSTTPSFSTEVERPQP 34
S++ GS E E+PQP
Sbjct: 657 SEESGSEEEEEEEEEEQPQP 676
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 617 (222.3 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 126/338 (37%), Positives = 202/338 (59%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
Q + + + + V++ + G LK YQ+KG+ WL +LY+ +NGILADEMGLGKT+Q
Sbjct: 729 QSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQ 788
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
+IA + ++ E + GPFLII P STL NW E +++ P V Y GSP R R F
Sbjct: 789 TIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR---RAF- 844
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLL-LGF 194
+ L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+ ++L +
Sbjct: 845 -VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 901
Query: 195 SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH 254
RLLL+GTP+QN + ELWALL+F++P++F S F +WF+ E K ++E
Sbjct: 902 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE-KVDLNEEE 960
Query: 255 ----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK-IKIED 309
+ RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++ Q++LY ++ K + + D
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 310 LIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
G LMN +MQ RK+CNHP +F+
Sbjct: 1021 GSEKDKKGK-----GGTKTLMNTIMQLRKICNHPYMFQ 1053
Score = 199 (75.1 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 45/163 (27%), Positives = 87/163 (53%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + LMN +MQ R
Sbjct: 988 LPEKVEYVIKCDMSALQRV----LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1043
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L F ++ L L +GK +LD +L +L
Sbjct: 1044 KICNHPYMFQH----------IEESFSEHLGFTGGIV-QGLDLYRASGKFELLDRILPKL 1092
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISER 554
+A+ H+VL++ QMT ++ ++E++ YR ++++RLDG++K +R
Sbjct: 1093 RATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135
Score = 43 (20.2 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 19/85 (22%), Positives = 36/85 (42%)
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 349
L R+ L + + +I+ + + S G ++ I + L+ R++ + RR
Sbjct: 367 LQEREYRLQARIVHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRR 426
Query: 350 DAKAPLAMSCEDYHRLYRGRQMERE 374
D A++ + Y R RQ RE
Sbjct: 427 DTALETALNAKAYKR--SKRQSLRE 449
Score = 37 (18.1 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 15 SQQFGSTTPSFSTEVERPQP 34
S++ GS E E+PQP
Sbjct: 657 SEESGSEEEEEEEEEEQPQP 676
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 617 (222.3 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 126/338 (37%), Positives = 202/338 (59%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
Q + + + + V++ + G LK YQ+KG+ WL +LY+ +NGILADEMGLGKT+Q
Sbjct: 729 QSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQ 788
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
+IA + ++ E + GPFLII P STL NW E +++ P V Y GSP R R F
Sbjct: 789 TIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR---RAF- 844
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLL-LGF 194
+ L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+ ++L +
Sbjct: 845 -VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 901
Query: 195 SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH 254
RLLL+GTP+QN + ELWALL+F++P++F S F +WF+ E K ++E
Sbjct: 902 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE-KVDLNEEE 960
Query: 255 ----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK-IKIED 309
+ RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++ Q++LY ++ K + + D
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 310 LIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
G LMN +MQ RK+CNHP +F+
Sbjct: 1021 GSEKDKKGK-----GGTKTLMNTIMQLRKICNHPYMFQ 1053
Score = 199 (75.1 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 45/163 (27%), Positives = 87/163 (53%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + LMN +MQ R
Sbjct: 988 LPEKVEYVIKCDMSALQRV----LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1043
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L F ++ L L +GK +LD +L +L
Sbjct: 1044 KICNHPYMFQH----------IEESFSEHLGFTGGIV-QGLDLYRASGKFELLDRILPKL 1092
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISER 554
+A+ H+VL++ QMT ++ ++E++ YR ++++RLDG++K +R
Sbjct: 1093 RATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135
Score = 44 (20.5 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 19/85 (22%), Positives = 36/85 (42%)
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 349
L R+ L + + +I+ + + S G ++ I + L+ R++ + RR
Sbjct: 367 LQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRR 426
Query: 350 DAKAPLAMSCEDYHRLYRGRQMERE 374
D A++ + Y R RQ RE
Sbjct: 427 DTALETALNAKAYKR--SKRQSLRE 449
Score = 37 (18.1 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 15 SQQFGSTTPSFSTEVERPQP 34
S++ GS E E+PQP
Sbjct: 657 SEESGSEEEEEEEEEEQPQP 676
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 617 (222.3 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 126/338 (37%), Positives = 202/338 (59%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
Q + + + + V++ + G LK YQ+KG+ WL +LY+ +NGILADEMGLGKT+Q
Sbjct: 729 QSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQ 788
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
+IA + ++ E + GPFLII P STL NW E +++ P V Y GSP R R F
Sbjct: 789 TIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR---RAF- 844
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLL-LGF 194
+ L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+ ++L +
Sbjct: 845 -VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 901
Query: 195 SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH 254
RLLL+GTP+QN + ELWALL+F++P++F S F +WF+ E K ++E
Sbjct: 902 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE-KVDLNEEE 960
Query: 255 ----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK-IKIED 309
+ RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++ Q++LY ++ K + + D
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 310 LIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
G LMN +MQ RK+CNHP +F+
Sbjct: 1021 GSEKDKKGK-----GGTKTLMNTIMQLRKICNHPYMFQ 1053
Score = 199 (75.1 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 45/163 (27%), Positives = 87/163 (53%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + LMN +MQ R
Sbjct: 988 LPEKVEYVIKCDMSALQRV----LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1043
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L F ++ L L +GK +LD +L +L
Sbjct: 1044 KICNHPYMFQH----------IEESFSEHLGFTGGIV-QGLDLYRASGKFELLDRILPKL 1092
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISER 554
+A+ H+VL++ QMT ++ ++E++ YR ++++RLDG++K +R
Sbjct: 1093 RATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135
Score = 44 (20.5 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 19/85 (22%), Positives = 36/85 (42%)
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 349
L R+ L + + +I+ + + S G ++ I + L+ R++ + RR
Sbjct: 367 LQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRR 426
Query: 350 DAKAPLAMSCEDYHRLYRGRQMERE 374
D A++ + Y R RQ RE
Sbjct: 427 DTALETALNAKAYKR--SKRQSLRE 449
Score = 37 (18.1 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 15 SQQFGSTTPSFSTEVERPQP 34
S++ GS E E+PQP
Sbjct: 657 SEESGSEEEEEEEEEEQPQP 676
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 617 (222.3 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 126/338 (37%), Positives = 202/338 (59%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
Q + + + + V++ + G LK YQ+KG+ WL +LY+ +NGILADEMGLGKT+Q
Sbjct: 729 QSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQ 788
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
+IA + ++ E + GPFLII P STL NW E +++ P V Y GSP R R F
Sbjct: 789 TIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR---RAF- 844
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLL-LGF 194
+ L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+ ++L +
Sbjct: 845 -VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 901
Query: 195 SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH 254
RLLL+GTP+QN + ELWALL+F++P++F S F +WF+ E K ++E
Sbjct: 902 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE-KVDLNEEE 960
Query: 255 ----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK-IKIED 309
+ RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++ Q++LY ++ K + + D
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 310 LIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
G LMN +MQ RK+CNHP +F+
Sbjct: 1021 GSEKDKKGK-----GGTKTLMNTIMQLRKICNHPYMFQ 1053
Score = 199 (75.1 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 45/163 (27%), Positives = 87/163 (53%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + LMN +MQ R
Sbjct: 988 LPEKVEYVIKCDMSALQRV----LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1043
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L F ++ L L +GK +LD +L +L
Sbjct: 1044 KICNHPYMFQH----------IEESFSEHLGFTGGIV-QGLDLYRASGKFELLDRILPKL 1092
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISER 554
+A+ H+VL++ QMT ++ ++E++ YR ++++RLDG++K +R
Sbjct: 1093 RATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135
Score = 44 (20.5 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 19/85 (22%), Positives = 36/85 (42%)
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 349
L R+ L + + +I+ + + S G ++ I + L+ R++ + RR
Sbjct: 367 LQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRR 426
Query: 350 DAKAPLAMSCEDYHRLYRGRQMERE 374
D A++ + Y R RQ RE
Sbjct: 427 DTALETALNAKAYKR--SKRQSLRE 449
Score = 37 (18.1 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 15 SQQFGSTTPSFSTEVERPQP 34
S++ GS E E+PQP
Sbjct: 657 SEESGSEEEEEEEEEEQPQP 676
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 511 (184.9 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 121/322 (37%), Positives = 183/322 (56%)
Query: 14 RSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKT 73
+S+ G + E + Q GL L+ YQL+G+NWLA + IL DEMGLGKT
Sbjct: 21 QSRSRGEAARTRVEEQDLQQWGLTGIRLRSYQLEGVNWLARCFHCQNGCILGDEMGLGKT 80
Query: 74 VQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ 133
Q+IA ++A + GPFLI+ P S L NW +EMERF P V Y G +ER L+Q
Sbjct: 81 CQTIALFIYLAGRLNDEGPFLILCPLSVLSNWTEEMERFAPGLSCVMYAGDKEERARLQQ 140
Query: 134 FWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLG 193
D+K +++ FHV++T+Y++ + D + W L++DEA +K+ +S+ K LL
Sbjct: 141 --DLK----QESRFHVLLTTYEICLKDSSFLKSFPWSVLVVDEAHRLKNQNSLLHKTLLE 194
Query: 194 FSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHD--EFNEWFSKDIESHAENKTSID 251
FS LLL+GTPIQNS+ EL++LL F+ P +F +F + + +DIE +++
Sbjct: 195 FSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFPKEQVGDFVQRY-QDIEKESDSA---- 249
Query: 252 ERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLI 311
S LH +L+PF+LRR+K +V EL K E+++Y +++ QK Y A+ +K D
Sbjct: 250 ----SELHKLLQPFLLRRVKAEVATELPKKTEVVLYHGMSALQKKYYKAIL--MKDLDAF 303
Query: 312 HSSSGGSIQLSNNIASNLMNLV 333
S ++L N + S L V
Sbjct: 304 ESEMAKKVKLQN-VLSQLRKCV 324
Score = 137 (53.3 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 256 SRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSS 315
S LH +L+PF+LRR+K +V EL K E+++Y +++ QK Y A+ K DL S
Sbjct: 250 SELHKLLQPFLLRRVKAEVATELPKKTEVVLYHGMSALQKKYYKAILMK----DLDAFES 305
Query: 316 GGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
+++ + L N++ Q RK +HP LFE
Sbjct: 306 ----EMAKKV--KLQNVLSQLRKCVDHPYLFE 331
Score = 132 (51.5 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 36/84 (42%), Positives = 52/84 (61%)
Query: 473 CEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLD-DLLKRL-KASGHRVLVYSQMTKMIDL 530
C D+ P L FE + LTL++ L L+ L L A GHRVL++SQMT+M+D+
Sbjct: 323 CVDH--PYL-FEGETVPFFLTLLFMTTPLKNLELAALSFLFLARGHRVLLFSQMTQMLDI 379
Query: 531 LEEFMVYRKYRFMRLDGSSKISER 554
L+++M YR Y + R+DGS + ER
Sbjct: 380 LQDYMDYRGYSYERVDGSVRGEER 403
Score = 56 (24.8 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 414 ALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 461
AL+KK L+ +++ + L N++ Q RK +HP LFE
Sbjct: 286 ALQKKYYKAILMKDLDAFESEMAKKV--KLQNVLSQLRKCVDHPYLFE 331
Score = 43 (20.2 bits), Expect = 4.4e-52, Sum P(3) = 4.4e-52
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 360 EDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYL 399
+DY YRG ER +G++ E H+ QQP ++
Sbjct: 381 QDYMD-YRGYSYERVDGSVRGEERHLAIKN--FGQQPVFV 417
Score = 37 (18.1 bits), Expect = 4.4e-52, Sum P(3) = 4.4e-52
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 421 IEDLIHSSSGGSIQLSNNI 439
+E++++ + +QL+N I
Sbjct: 476 VEEIVYRKAASKLQLTNAI 494
Score = 37 (18.1 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 307 IEDLIHSSSGGSIQLSNNI 325
+E++++ + +QL+N I
Sbjct: 476 VEEIVYRKAASKLQLTNAI 494
>FB|FBgn0086902 [details] [associations]
symbol:kis "kismet" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0007379 "segment
specification" evidence=IMP] [GO:0007350 "blastoderm segmentation"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0019730 "antimicrobial humoral
response" evidence=IMP] [GO:0007298 "border follicle cell
migration" evidence=IMP] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0016322 "neuron remodeling" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0007614 "short-term memory"
evidence=IMP] [GO:0046622 "positive regulation of organ growth"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0007031 "peroxisome
organization" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0045892 GO:GO:0005875
EMBL:AE014134 GO:GO:0003677 GO:GO:0006200 GO:GO:0016322
GO:GO:0007031 GO:GO:0016887 GO:GO:0007298 GO:GO:0007614
GO:GO:0004386 GO:GO:0007379 GO:GO:0046622 GO:GO:0007476
GO:GO:0019730 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007350 InterPro:IPR023780
KO:K14437 GeneTree:ENSGT00560000077077 RefSeq:NP_001137761.1
UniGene:Dm.3182 ProteinModelPortal:B7Z002 SMR:B7Z002 STRING:B7Z002
EnsemblMetazoa:FBtr0299837 GeneID:33185 KEGG:dme:Dmel_CG3696
CTD:33185 FlyBase:FBgn0086902 OMA:TTFEMIV OrthoDB:EOG4BZKHC
PhylomeDB:B7Z002 GenomeRNAi:33185 NextBio:782323 Bgee:B7Z002
Uniprot:B7Z002
Length = 5517
Score = 454 (164.9 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 108/309 (34%), Positives = 176/309 (56%)
Query: 2 DNVRHAVEVEK--QRSQQFGSTTPSFSTEVERPQPGLFRG--NLKHYQLKGMNWLANLYD 57
D + + K QRS+ P + + +++G +L+ YQL+G+NWL +
Sbjct: 1986 DKIEQYLRFNKIPQRSEWKSKKRPHPELWKKLEKTPVYKGGNSLRPYQLEGLNWLKFSWY 2045
Query: 58 QGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFK 117
N ILADEMGLGKT+QS+ F+ H Y + GPFL+I+P ST+ NWQ+E E + D
Sbjct: 2046 NTHNCILADEMGLGKTIQSLTFV-HSVYEYGIRGPFLVIAPLSTIPNWQREFEGWT-DMN 2103
Query: 118 VVPYWGSPQERKILRQF-WDMKNLHTK----DASFHVVITSYQLVVSDFKYFNRIKWQYL 172
VV Y GS +++++ + + K K F+V+IT+++++V+D+ W+
Sbjct: 2104 VVVYHGSVTSKQMIQDYEYYYKTESGKVLKEPIKFNVLITTFEMIVTDYMDLKAFNWRLC 2163
Query: 173 ILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEF 232
++DEA +K+ + + L + +R+LLSGTP+QN+++EL++LL+F+ PS F S +EF
Sbjct: 2164 VIDEAHRLKNRNCKLLEGLRQLNLEHRVLLSGTPLQNNISELFSLLNFLEPSQFSSQEEF 2223
Query: 233 NEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTS 292
F +T E +++L +LKP MLRR+K DVE L+ K E ++ LT+
Sbjct: 2224 MSEFGS-------LRT---EEEVNKLQALLKPMMLRRLKDDVEKSLAPKEETIIEVELTN 2273
Query: 293 RQKLLYSAL 301
QK Y +
Sbjct: 2274 IQKKYYRGI 2282
Score = 215 (80.7 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 49/130 (37%), Positives = 77/130 (59%)
Query: 436 SNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLV 495
S NI NLMN +M+ RK C HP L + + + P+ ++ L+
Sbjct: 2296 SANIP-NLMNTMMELRKCCIHPYLLNGAEEQIQYDFKSQHGEDPESYYKN--------LI 2346
Query: 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR 555
AGK+ ++D LL +LKA+GHRVL++SQM + +D+LE+++VYRKY F R+DG + + R+
Sbjct: 2347 LSAGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQ 2406
Query: 556 ---DMFAVPG 562
D ++ PG
Sbjct: 2407 EAIDRYSKPG 2416
Score = 45 (20.9 bits), Expect = 1.8e-42, Sum P(3) = 1.8e-42
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 399 LPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQ----LSNNIASNL 443
LP + E+ + ++ P LKK SS GGS+ N A+NL
Sbjct: 5390 LPPPYEEADELIIQPILKKPTAANP--GSSHGGSVDDLDTAENTSAANL 5436
Score = 43 (20.2 bits), Expect = 4.6e-42, Sum P(3) = 4.6e-42
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 417 KKIK--IEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
+KIK I DLI + G +Q + S L NLV + R
Sbjct: 2751 EKIKTFIWDLITPTEDGEVQKISRDHSGLHNLVPRGR 2787
Score = 39 (18.8 bits), Expect = 1.8e-42, Sum P(3) = 1.8e-42
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 297 LYSALKKKIKIEDLIHSSSGGSIQLS 322
L S+L K E L +SS G+I LS
Sbjct: 4237 LSSSLPKMNMTEMLKSASSSGAIDLS 4262
Score = 37 (18.1 bits), Expect = 2.9e-42, Sum P(3) = 2.9e-42
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 301 LKKKIKIEDLIHSSSGGSIQLSNN 324
L KK +IEDL+ + G++ +N
Sbjct: 2515 LSKK-EIEDLLKKGAYGAVMDDDN 2537
Score = 37 (18.1 bits), Expect = 1.9e-41, Sum P(3) = 1.9e-41
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 411 VSPALKKKIKIEDLIHSSSGGSIQLS 436
+S +L K E L +SS G+I LS
Sbjct: 4237 LSSSLPKMNMTEMLKSASSSGAIDLS 4262
Score = 37 (18.1 bits), Expect = 8.2e-41, Sum P(2) = 8.2e-41
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 415 LKKKIKIEDLIHSSSGGSIQLSNN 438
L KK +IEDL+ + G++ +N
Sbjct: 2515 LSKK-EIEDLLKKGAYGAVMDDDN 2537
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 445 (161.7 bits), Expect = 2.1e-59, Sum P(2) = 2.1e-59
Identities = 114/303 (37%), Positives = 173/303 (57%)
Query: 39 GN-LKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96
GN L+ YQL+G+NWL N Y++ N ILADEMGLGKT+QSIA L + V PF+II
Sbjct: 844 GNQLREYQLEGVNWLLFNWYNRQ-NCILADEMGLGKTIQSIALLSEMFSA-GVQSPFMII 901
Query: 97 SPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW-----DMKNLHTKDASFHVVI 151
+P ST+ NW++E + D + Y GS R++++Q+ D +L F +I
Sbjct: 902 APLSTITNWEREFSNWT-DMNAIVYHGSLASRQMIQQYEMYCKDDKGHLIPGAYKFDALI 960
Query: 152 TSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSM 211
T++++++SD I W+ +++DEA +K+ + L +++LL+GTP+QN++
Sbjct: 961 TTFEMILSDCPELREISWRCVVIDEAHRLKNRNCKLLDSLKMLEIEHKVLLTGTPLQNTV 1020
Query: 212 AELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIK 271
EL++LLHF+ P+ F S EF F D+ KT E + +L ILKP MLRR+K
Sbjct: 1021 EELFSLLHFLEPAQFPSEIEFLREFG-DL------KT---EEQVQKLQSILKPMMLRRLK 1070
Query: 272 KDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSN--NIASNL 329
+DVE L+ K E ++ LT QK Y A+ +E S G+ Q SN N+ + +
Sbjct: 1071 EDVEKNLAPKQETIIEVELTDVQKKYYRAI-----LERNFSFLSMGATQNSNVPNLLNTM 1125
Query: 330 MNL 332
M L
Sbjct: 1126 MEL 1128
Score = 215 (80.7 bits), Expect = 2.1e-59, Sum P(2) = 2.1e-59
Identities = 52/137 (37%), Positives = 79/137 (57%)
Query: 429 SGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAM-SCEDYVIPKLVFEEAL 487
S G+ Q SN NL+N +M+ RK CNHP L + K + D + P
Sbjct: 1109 SMGATQNSN--VPNLLNTMMELRKCCNHPYLITGAEEKIVSELREVYDPLAPDF------ 1160
Query: 488 LCHKLTLVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDG 547
H LV AGKL +LD LL RLKA GH+VL++SQM + +D+LE+++++++Y + R+DG
Sbjct: 1161 --HLQALVRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDG 1218
Query: 548 SSKISERR---DMFAVP 561
+ + R+ D F+ P
Sbjct: 1219 RVRGNLRQAAIDRFSKP 1235
>UNIPROTKB|Q3L8U1 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid metabolic
process" evidence=TAS] [GO:0044281 "small molecule metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_111217 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0044281
GO:GO:0003677 GO:GO:0044255 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:AY243500 EMBL:DQ333316
EMBL:AY647157 EMBL:AC007906 EMBL:AC079416 EMBL:BC140815
EMBL:AB002306 EMBL:AF150735 EMBL:AK022582 IPI:IPI00383105
IPI:IPI00746795 IPI:IPI00914955 RefSeq:NP_079410.4 UniGene:Hs.59159
UniGene:Hs.622347 ProteinModelPortal:Q3L8U1 SMR:Q3L8U1
IntAct:Q3L8U1 STRING:Q3L8U1 PhosphoSite:Q3L8U1 DMDM:215273951
PaxDb:Q3L8U1 PRIDE:Q3L8U1 Ensembl:ENST00000398510
Ensembl:ENST00000447540 Ensembl:ENST00000564845
Ensembl:ENST00000566029 GeneID:80205 KEGG:hsa:80205 UCSC:uc002egy.3
UCSC:uc002ehb.3 UCSC:uc002ehc.3 CTD:80205 GeneCards:GC16P053041
HGNC:HGNC:25701 neXtProt:NX_Q3L8U1 PharmGKB:PA128394727
InParanoid:Q3L8U1 KO:K14438 OMA:MWGHQTA GenomeRNAi:80205
NextBio:70576 ArrayExpress:Q3L8U1 Bgee:Q3L8U1 CleanEx:HS_CHD9
Genevestigator:Q3L8U1 GermOnline:ENSG00000177200 Uniprot:Q3L8U1
Length = 2897
Score = 461 (167.3 bits), Expect = 2.4e-59, Sum P(2) = 2.4e-59
Identities = 121/304 (39%), Positives = 179/304 (58%)
Query: 39 GN-LKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96
GN L+ YQL+G+NWL N Y++ N ILADEMGLGKT+QSI FL I T + GPFLII
Sbjct: 857 GNQLREYQLEGLNWLLFNWYNRR-NCILADEMGLGKTIQSITFLYEILLT-GIRGPFLII 914
Query: 97 SPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWDMKNLHTKDA-SFHVVI 151
+P ST+ NW++E + D VV Y GS R++++Q F D + + A F +I
Sbjct: 915 APLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAII 973
Query: 152 TSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRN---RLLLSGTPIQ 208
T++++++ N I+W+ +I+DEA +K+ + KLL G N ++LL+GTP+Q
Sbjct: 974 TTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNC---KLLEGLKLMNLEHKVLLTGTPLQ 1030
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLR 268
N++ EL++LLHF+ P F S F + F D+ KT E + +L ILKP MLR
Sbjct: 1031 NTVEELFSLLHFLEPLRFPSESTFMQEFG-DL------KT---EEQVQKLQAILKPMMLR 1080
Query: 269 RIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASN 328
R+K+DVE +L+ K E ++ LT+ QK Y A+ +K L S G + N + +
Sbjct: 1081 RLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEK-NFSFL--SKGAGQTNVPN-LVNT 1136
Query: 329 LMNL 332
+M L
Sbjct: 1137 MMEL 1140
Score = 200 (75.5 bits), Expect = 2.4e-59, Sum P(2) = 2.4e-59
Identities = 43/123 (34%), Positives = 74/123 (60%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + + K + D P A H ++ AGKL
Sbjct: 1132 NLVNTMMELRKCCNHPYLIKGAEEK--ILGEFRDTYNPA-----ASDFHLQAMIQSAGKL 1184
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL ++KA GH+VL++SQM + +D+LE+++++++Y + R+DG + + R+ D F
Sbjct: 1185 VLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRF 1244
Query: 559 AVP 561
+ P
Sbjct: 1245 SKP 1247
Score = 40 (19.1 bits), Expect = 1.6e-42, Sum P(2) = 1.6e-42
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 326 ASNLMNLVMQFRKV----CNHPELFERR-----DAKAPLAMSCEDYHR-LYRGRQMEREE 375
AS + + RKV HP+LFER + P+ C + R L G +
Sbjct: 1921 ASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPVWWECGPHDRDLLIGAA---KH 1977
Query: 376 GTILPEFPHVPRDP 389
G ++ H+ RDP
Sbjct: 1978 GVSRTDY-HILRDP 1990
Score = 39 (18.8 bits), Expect = 2.0e-42, Sum P(2) = 2.0e-42
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 440 ASNLMNLVMQFRKV----CNHPELFER 462
AS + + RKV HP+LFER
Sbjct: 1921 ASRTLYRIELLRKVREQALRHPQLFER 1947
Score = 37 (18.1 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 405 ESTQNMVSPALKKKIKIEDLIHSS 428
ESTQ++++P ++HSS
Sbjct: 320 ESTQHILNPNTSLNSNNFQILHSS 343
>UNIPROTKB|E2RDK8 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AAEX03001603
EMBL:AAEX03001604 EMBL:AAEX03001605 Ensembl:ENSCAFT00000015413
Uniprot:E2RDK8
Length = 2902
Score = 461 (167.3 bits), Expect = 2.4e-59, Sum P(2) = 2.4e-59
Identities = 121/304 (39%), Positives = 179/304 (58%)
Query: 39 GN-LKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96
GN L+ YQL+G+NWL N Y++ N ILADEMGLGKT+QSI FL I T + GPFLII
Sbjct: 859 GNQLREYQLEGLNWLLFNWYNRR-NCILADEMGLGKTIQSITFLYEILLT-GIRGPFLII 916
Query: 97 SPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWDMKNLHTKDA-SFHVVI 151
+P ST+ NW++E + D VV Y GS R++++Q F D + + A F +I
Sbjct: 917 APLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAII 975
Query: 152 TSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRN---RLLLSGTPIQ 208
T++++++ N I+W+ +I+DEA +K+ + KLL G N ++LL+GTP+Q
Sbjct: 976 TTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNC---KLLEGLKLMNLEHKVLLTGTPLQ 1032
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLR 268
N++ EL++LLHF+ P F S F + F D+ KT E + +L ILKP MLR
Sbjct: 1033 NTVEELFSLLHFLEPLRFPSESTFMQEFG-DL------KT---EEQVQKLQAILKPMMLR 1082
Query: 269 RIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASN 328
R+K+DVE +L+ K E ++ LT+ QK Y A+ +K L S G + N + +
Sbjct: 1083 RLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEK-NFSFL--SKGAGQTNVPN-LVNT 1138
Query: 329 LMNL 332
+M L
Sbjct: 1139 MMEL 1142
Score = 200 (75.5 bits), Expect = 2.4e-59, Sum P(2) = 2.4e-59
Identities = 43/123 (34%), Positives = 74/123 (60%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + + K + D P A H ++ AGKL
Sbjct: 1134 NLVNTMMELRKCCNHPYLIKGAEEK--ILGEFRDTYNPA-----ASDFHLQAMIQSAGKL 1186
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL ++KA GH+VL++SQM + +D+LE+++++++Y + R+DG + + R+ D F
Sbjct: 1187 VLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRF 1246
Query: 559 AVP 561
+ P
Sbjct: 1247 SKP 1249
Score = 40 (19.1 bits), Expect = 1.6e-42, Sum P(2) = 1.6e-42
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 326 ASNLMNLVMQFRKV----CNHPELFERR-----DAKAPLAMSCEDYHR-LYRGRQMEREE 375
AS + + RKV HP+LFER + P+ C + R L G +
Sbjct: 1923 ASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPVWWECGPHDRDLLIGAA---KH 1979
Query: 376 GTILPEFPHVPRDP 389
G ++ H+ RDP
Sbjct: 1980 GVSRTDY-HILRDP 1992
Score = 39 (18.8 bits), Expect = 2.0e-42, Sum P(2) = 2.0e-42
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 440 ASNLMNLVMQFRKV----CNHPELFER 462
AS + + RKV HP+LFER
Sbjct: 1923 ASRTLYRIELLRKVREQALRHPQLFER 1949
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 621 (223.7 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 125/338 (36%), Positives = 203/338 (60%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
Q + + + + +VE+ L G LK YQ+KG+ WL +LY+ +NGILADEMGLGKT+Q
Sbjct: 741 QSYYAVAHAVTEKVEKQSSLLVNGQLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQ 800
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
+IA + ++ E + GPFLII P STL NW E +++ P V Y GSP R R F
Sbjct: 801 TIALITYLMEFKRLNGPFLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAAR---RAFL 857
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLL-LGF 194
+ + F+V++T+Y+ ++ D + +++W+Y+I+DE +K+ ++L +
Sbjct: 858 PI----LRSGKFNVLVTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHCKLTQVLNTHY 913
Query: 195 SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH 254
R+LL+GTP+QN + ELWALL+F++P++F S F +WF+ E K ++E
Sbjct: 914 LAPRRVLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE-KVDLNEEE 972
Query: 255 ----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK-IKIED 309
+ RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++ Q++LY ++ K + + D
Sbjct: 973 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1032
Query: 310 LIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
G LMN +MQ RK+CNHP +F+
Sbjct: 1033 GSEKDKKGK-----GGTKTLMNTIMQLRKICNHPYMFQ 1065
Score = 194 (73.4 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 44/163 (26%), Positives = 86/163 (52%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + LMN +MQ R
Sbjct: 1000 LPEKVEYVIKCDMSALQRV----LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1055
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L F ++ L +GK +LD +L +L
Sbjct: 1056 KICNHPYMFQH----------IEESFSEHLGFTGGIV-QGSDLYRASGKFELLDRILPKL 1104
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISER 554
+A+ H+VL++ QMT ++ ++E++ YR ++++RLDG++K +R
Sbjct: 1105 RATNHKVLLFCQMTTLMTIMEDYFAYRNFKYLRLDGTTKAEDR 1147
Score = 50 (22.7 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 20/85 (23%), Positives = 37/85 (43%)
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 349
L R+ L + + +I+ + + S G ++ NI + L+ R++ + RR
Sbjct: 385 LQEREYRLQARIAHRIQELENLPGSLAGDLRTKANIELKALRLLNFQRQLRQEVVVCMRR 444
Query: 350 DAKAPLAMSCEDYHRLYRGRQMERE 374
D A++ + Y R RQ RE
Sbjct: 445 DTALETALNAKAYKR--SKRQSLRE 467
>MGI|MGI:1924001 [details] [associations]
symbol:Chd9 "chromodomain helicase DNA binding protein 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
MGI:MGI:1924001 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077 CTD:80205
KO:K14438 OMA:MWGHQTA EMBL:DQ127229 EMBL:AK034446 EMBL:AK039562
EMBL:AK084000 EMBL:AB093226 EMBL:BC052896 IPI:IPI00229650
IPI:IPI00758139 RefSeq:NP_796198.1 UniGene:Mm.100615
ProteinModelPortal:Q8BYH8 SMR:Q8BYH8 STRING:Q8BYH8
PhosphoSite:Q8BYH8 PaxDb:Q8BYH8 PRIDE:Q8BYH8
Ensembl:ENSMUST00000048665 Ensembl:ENSMUST00000109614 GeneID:109151
KEGG:mmu:109151 UCSC:uc009msf.2 UCSC:uc009msi.2 InParanoid:Q8BYH8
OrthoDB:EOG4548XQ ChiTaRS:CHD9 NextBio:361700 Bgee:Q8BYH8
CleanEx:MM_CHD9 Genevestigator:Q8BYH8 Uniprot:Q8BYH8
Length = 2885
Score = 459 (166.6 bits), Expect = 3.0e-59, Sum P(2) = 3.0e-59
Identities = 121/304 (39%), Positives = 178/304 (58%)
Query: 39 GN-LKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLII 96
GN L+ YQL+G+NWL N Y++ N ILADEMGLGKT+QSI FL I T + GPFLII
Sbjct: 856 GNQLREYQLEGLNWLLFNWYNRR-NCILADEMGLGKTIQSITFLYEILLT-GIRGPFLII 913
Query: 97 SPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQ----FWDMKNLHTKDA-SFHVVI 151
+P ST+ NW++E + D VV Y GS R++++Q F D + + A F +I
Sbjct: 914 APLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAII 972
Query: 152 TSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRN---RLLLSGTPIQ 208
T++++++ N I W+ +I+DEA +K+ + KLL G N ++LL+GTP+Q
Sbjct: 973 TTFEMILGGCGELNAIDWRCVIIDEAHRLKNKNC---KLLEGLKLMNLEHKVLLTGTPLQ 1029
Query: 209 NSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLR 268
N++ EL++LLHF+ P F S F + F D+ KT E + +L ILKP MLR
Sbjct: 1030 NTVEELFSLLHFLEPLRFPSESTFMQEFG-DL------KT---EEQVQKLQAILKPMMLR 1079
Query: 269 RIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASN 328
R+K+DVE +L+ K E ++ LT+ QK Y A+ +K L S G + N + +
Sbjct: 1080 RLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEK-NFSFL--SKGAGQTNVPN-LVNT 1135
Query: 329 LMNL 332
+M L
Sbjct: 1136 MMEL 1139
Score = 201 (75.8 bits), Expect = 3.0e-59, Sum P(2) = 3.0e-59
Identities = 43/123 (34%), Positives = 74/123 (60%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
NL+N +M+ RK CNHP L + + K + D P A H ++ AGKL
Sbjct: 1131 NLVNTMMELRKCCNHPYLIKGAEEK--ILGEFRDTYNPS-----ASDFHLQAMIQSAGKL 1183
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
++D LL ++KA GH+VL++SQM + +D+LE+++++++Y + R+DG + + R+ D F
Sbjct: 1184 VLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRF 1243
Query: 559 AVP 561
+ P
Sbjct: 1244 SKP 1246
Score = 160 (61.4 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 39/101 (38%), Positives = 57/101 (56%)
Query: 252 ERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLI 311
E + +L ILKP MLRR+K+DVE +L+ K E ++ LT+ QK Y A+ +K +
Sbjct: 1063 EEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEK----NFS 1118
Query: 312 HSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAK 352
S G N+ NL+N +M+ RK CNHP L + + K
Sbjct: 1119 FLSKGAG---QTNVP-NLVNTMMELRKCCNHPYLIKGAEEK 1155
Score = 42 (19.8 bits), Expect = 1.6e-42, Sum P(2) = 1.6e-42
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 326 ASNLMNLVMQFRKV----CNHPELFERR-----DAKAPLAMSCEDYHR-LYRGRQMEREE 375
AS + + RKV HP+LFER + P+ C + R L G +
Sbjct: 1920 ASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPIWWECGSHDRDLLIGAA---KH 1976
Query: 376 GTILPEFPHVPRDP 389
G ++ H+ RDP
Sbjct: 1977 GVSRTDY-HILRDP 1989
Score = 39 (18.8 bits), Expect = 3.3e-42, Sum P(2) = 3.3e-42
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 440 ASNLMNLVMQFRKV----CNHPELFER 462
AS + + RKV HP+LFER
Sbjct: 1920 ASRTLYRIELLRKVREQALRHPQLFER 1946
Score = 39 (18.8 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 298 YSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAM 357
YS LK+K KI LI + G + N + L + + + +RR + +
Sbjct: 584 YSKLKEKTKIGKLI-ITLGKKHKRRNESSDELSDAEQRSQHTFKEQHSQKRRSNRQ---I 639
Query: 358 SCEDYHRLYRGRQMERE-EGTI 378
+ Y G+Q E E +G++
Sbjct: 640 KRKKYAEDAEGKQSEEEVKGSL 661
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 617 (222.3 bits), Expect = 7.4e-59, P = 7.4e-59
Identities = 126/338 (37%), Positives = 202/338 (59%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
Q + + + + V++ + G LK YQ+KG+ WL +LY+ +NGILADEMGLGKT+Q
Sbjct: 729 QSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQ 788
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
+IA + ++ E + GPFLII P STL NW E +++ P V Y GSP R R F
Sbjct: 789 TIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR---RAF- 844
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLL-LGF 194
+ L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+ ++L +
Sbjct: 845 -VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 901
Query: 195 SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH 254
RLLL+GTP+QN + ELWALL+F++P++F S F +WF+ E K ++E
Sbjct: 902 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE-KVDLNEEE 960
Query: 255 ----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK-IKIED 309
+ RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++ Q++LY ++ K + + D
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 310 LIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
G LMN +MQ RK+CNHP +F+
Sbjct: 1021 GSEKDKKGK-----GGTKTLMNTIMQLRKICNHPYMFQ 1053
Score = 199 (75.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 45/163 (27%), Positives = 87/163 (53%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + LMN +MQ R
Sbjct: 988 LPEKVEYVIKCDMSALQRV----LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1043
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L F ++ L L +GK +LD +L +L
Sbjct: 1044 KICNHPYMFQH----------IEESFSEHLGFTGGIV-QGLDLYRASGKFELLDRILPKL 1092
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISER 554
+A+ H+VL++ QMT ++ ++E++ YR ++++RLDG++K +R
Sbjct: 1093 RATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135
Score = 44 (20.5 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 19/85 (22%), Positives = 36/85 (42%)
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 349
L R+ L + + +I+ + + S G ++ I + L+ R++ + RR
Sbjct: 367 LQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRR 426
Query: 350 DAKAPLAMSCEDYHRLYRGRQMERE 374
D A++ + Y R RQ RE
Sbjct: 427 DTALETALNAKAYKR--SKRQSLRE 449
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 617 (222.3 bits), Expect = 7.7e-59, P = 7.7e-59
Identities = 126/338 (37%), Positives = 202/338 (59%)
Query: 16 QQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQ 75
Q + + + + V++ + G LK YQ+KG+ WL +LY+ +NGILADEMGLGKT+Q
Sbjct: 729 QSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQ 788
Query: 76 SIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW 135
+IA + ++ E + GPFLII P STL NW E +++ P V Y GSP R R F
Sbjct: 789 TIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR---RAF- 844
Query: 136 DMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLL-LGF 194
+ L + F+V++T+Y+ ++ D +I+W+Y+I+DE +K+ ++L +
Sbjct: 845 -VPQL--RSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 901
Query: 195 SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH 254
RLLL+GTP+QN + ELWALL+F++P++F S F +WF+ E K ++E
Sbjct: 902 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE-KVDLNEEE 960
Query: 255 ----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK-IKIED 309
+ RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++ Q++LY ++ K + + D
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 310 LIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
G LMN +MQ RK+CNHP +F+
Sbjct: 1021 GSEKDKKGK-----GGTKTLMNTIMQLRKICNHPYMFQ 1053
Score = 199 (75.1 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 45/163 (27%), Positives = 87/163 (53%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFR 451
LP++ Y+ C + Q + L + ++ + ++ + + LMN +MQ R
Sbjct: 988 LPEKVEYVIKCDMSALQRV----LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1043
Query: 452 KVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRL 511
K+CNHP +F+ E+ L F ++ L L +GK +LD +L +L
Sbjct: 1044 KICNHPYMFQH----------IEESFSEHLGFTGGIV-QGLDLYRASGKFELLDRILPKL 1092
Query: 512 KASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISER 554
+A+ H+VL++ QMT ++ ++E++ YR ++++RLDG++K +R
Sbjct: 1093 RATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135
Score = 44 (20.5 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 19/85 (22%), Positives = 36/85 (42%)
Query: 290 LTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 349
L R+ L + + +I+ + + S G ++ I + L+ R++ + RR
Sbjct: 367 LQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRR 426
Query: 350 DAKAPLAMSCEDYHRLYRGRQMERE 374
D A++ + Y R RQ RE
Sbjct: 427 DTALETALNAKAYKR--SKRQSLRE 449
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 454 (164.9 bits), Expect = 1.3e-58, Sum P(2) = 1.3e-58
Identities = 116/303 (38%), Positives = 177/303 (58%)
Query: 39 GN-LKHYQLKGMNWLA-NLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVW--GPFL 94
GN L+ YQL+G+NWL N Y++ N ILADEMGLGKT+QSI FL E Y+V GPFL
Sbjct: 752 GNQLREYQLEGVNWLLFNWYNRQ-NCILADEMGLGKTIQSITFL---QEVYNVGIRGPFL 807
Query: 95 IISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFW----DMKNLHTKDA-SFHV 149
+I+P ST+ NW++E + + Y GS R++++Q+ D K A F
Sbjct: 808 VIAPLSTITNWEREFGSWT-QMNTIVYHGSLASRQMIQQYEMYCKDSKGRLIPGAYKFDA 866
Query: 150 VITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQN 209
+IT++++V+SD I+W+ +I+DEA +K+ + L +++LL+GTP+QN
Sbjct: 867 LITTFEMVLSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQN 926
Query: 210 SMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRR 269
++ EL++LLHF+ P+ F S EF + F D+ KT E + +L ILKP MLRR
Sbjct: 927 TVEELFSLLHFLEPTQFSSEAEFLKDFG-DL------KT---EEQVQKLQAILKPMMLRR 976
Query: 270 IKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNL 329
+K+DVE L+ K E ++ LT+ QK Y A+ +K + + G S + N+ + +
Sbjct: 977 LKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK----NFSFLTKGASQSNTPNLLNTM 1032
Query: 330 MNL 332
M L
Sbjct: 1033 MEL 1035
Score = 197 (74.4 bits), Expect = 1.3e-58, Sum P(2) = 1.3e-58
Identities = 45/129 (34%), Positives = 74/129 (57%)
Query: 436 SNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLV 495
S + NL+N +M+ RK CNHP L + K V+P F H +V
Sbjct: 1021 SQSNTPNLLNTMMELRKCCNHPYLITGAEEKIISEFREATPVVPP-DF------HVQAMV 1073
Query: 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR 555
+GKL ++D LL +L+A GH+VL++SQM + +D+LE++++ R+Y + R+DG + + R+
Sbjct: 1074 RSSGKLVLIDKLLPKLRAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQ 1133
Query: 556 ---DMFAVP 561
D F+ P
Sbjct: 1134 AAIDRFSRP 1142
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 614 (221.2 bits), Expect = 1.4e-58, P = 1.4e-58
Identities = 123/339 (36%), Positives = 203/339 (59%)
Query: 15 SQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTV 74
SQ + + V++ L G LK YQ++G+ W+ +LY+ +NGILADEMGLGKT+
Sbjct: 700 SQSYYGVAHAVIERVDKQSTFLINGTLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTI 759
Query: 75 QSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQF 134
Q+I + ++ E + GP+LII P STL NW E++++ P + Y G+P R+ L
Sbjct: 760 QTIGLITYLMELKRLNGPYLIIVPLSTLSNWVYELDKWAPSIVKIAYKGTPSMRRSL--- 816
Query: 135 WDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLL-LG 193
+ L + F+V+IT+Y+ ++ D +I+W+Y+I+DE +K+ ++L
Sbjct: 817 --VPQL--RSGKFNVLITTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 872
Query: 194 FSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDER 253
+ RLLL+GTP+QN + ELWALL+F++P++F S F +WF+ E + ++E
Sbjct: 873 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE-RVDLNEE 931
Query: 254 H----LSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK-IKIE 308
+ RLH +L+PF+LRR+KK+VE++L +K+E ++ C +++ QK+LY ++ K I +
Sbjct: 932 ETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQGKGILLT 991
Query: 309 DLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFE 347
D G A LMN +MQ +K+CNHP +F+
Sbjct: 992 DGSEKDKKGK-----GGAKTLMNTIMQLKKICNHPYMFQ 1025
Score = 199 (75.1 bits), Expect = 7.1e-12, P = 7.1e-12
Identities = 53/167 (31%), Positives = 87/167 (52%)
Query: 392 LPQQPTYLPVCFFESTQNMVSPALKKK-IKIEDLIHSSSGGSIQLSNNIASNLMNLVMQF 450
LP++ Y+ C + Q ++ ++ K I + D G A LMN +MQ
Sbjct: 960 LPEKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGSEKDKKGK-----GGAKTLMNTIMQL 1014
Query: 451 RKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKR 510
+K+CNHP +F+ E+ L F ++ L +GK +LD +L +
Sbjct: 1015 KKICNHPYMFQH----------IEESFAEHLGFPNGIISGP-DLYRASGKFELLDRILPK 1063
Query: 511 LKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM 557
LKA+ HRVL++ QMT ++ +LE++ YR + ++RLDG++K SE R M
Sbjct: 1064 LKATNHRVLLFCQMTSLMTILEDYFGYRNFLYLRLDGTTK-SEDRAM 1109
>UNIPROTKB|Q96L91 [details] [associations]
symbol:EP400 "E1A-binding protein p400" species:9606 "Homo
sapiens" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0035267
"NuA4 histone acetyltransferase complex" evidence=IDA] [GO:0043968
"histone H2A acetylation" evidence=IDA] [GO:0043967 "histone H4
acetylation" evidence=IDA] [GO:0016607 "nuclear speck"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00717 GO:GO:0005524
GO:GO:0003677 GO:GO:0016607 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0035267 GO:GO:0043968 GO:GO:0043967 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR017877 PROSITE:PS50090 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 KO:K11320 EMBL:AY044869 EMBL:AC137590 EMBL:AC137632
EMBL:AB040931 EMBL:AK096311 EMBL:BC037208 EMBL:BC064554
EMBL:AB058721 EMBL:U80743 IPI:IPI00064931 IPI:IPI00167535
IPI:IPI00783692 IPI:IPI00798339 IPI:IPI00878154 RefSeq:NP_056224.3
UniGene:Hs.595201 ProteinModelPortal:Q96L91 DIP:DIP-29915N
IntAct:Q96L91 MINT:MINT-1897496 STRING:Q96L91 PhosphoSite:Q96L91
DMDM:209572748 PaxDb:Q96L91 PRIDE:Q96L91 DNASU:57634
Ensembl:ENST00000330386 Ensembl:ENST00000332482
Ensembl:ENST00000333577 Ensembl:ENST00000389561
Ensembl:ENST00000389562 Ensembl:ENST00000537902
Ensembl:ENST00000541296 GeneID:57634 KEGG:hsa:57634 UCSC:uc001ujm.3
UCSC:uc001ujn.3 UCSC:uc021rgq.1 CTD:57634 GeneCards:GC12P132434
H-InvDB:HIX0021564 HGNC:HGNC:11958 HPA:HPA016704 MIM:606265
neXtProt:NX_Q96L91 PharmGKB:PA27808 HOVERGEN:HBG051488
InParanoid:Q96L91 OMA:MQKQKLQ OrthoDB:EOG4RBQHQ ChiTaRS:EP400
GenomeRNAi:57634 NextBio:64345 ArrayExpress:Q96L91 Bgee:Q96L91
CleanEx:HS_EP400 Genevestigator:Q96L91 GermOnline:ENSG00000183495
Uniprot:Q96L91
Length = 3159
Score = 515 (186.3 bits), Expect = 3.1e-58, Sum P(2) = 3.1e-58
Identities = 104/273 (38%), Positives = 157/273 (57%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
+T V+ P L G L+ YQ G++WLA LY + +NGILADE GLGKTVQ IAF H+A
Sbjct: 1076 TTSVKFNAPSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLAC 1135
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP L++ + + W+ E++R+ P K++ Y GS +E K RQ W N
Sbjct: 1136 NEGNWGPHLVVVRSCNILKWELELKRWCPGLKILSYIGSHRELKAKRQEWAEPN------ 1189
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
SFHV ITSY F R++W+ L++DE Q +K + W+ + + RLLL +
Sbjct: 1190 SFHVCITSYTQFFRGLTAFTRVRWKCLVIDEMQRVKGMTERHWEAVFTLQSQQRLLLIDS 1249
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+ N+ ELW ++HF++P + + S + + +E + + RLH + +PF
Sbjct: 1250 PLHNTFLELWTMVHFLVPGIS------RPYLSSPLRAPSEESQDYYHKVVIRLHRVTQPF 1303
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
+LRR K+DVE +L+ K E ++ C L++RQK LY
Sbjct: 1304 ILRRTKRDVEKQLTKKYEHVLKCRLSNRQKALY 1336
Score = 313 (115.2 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 66/204 (32%), Positives = 112/204 (54%)
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
SFHV ITSY F R++W+ L++DE Q +K + W+ + + RLLL +
Sbjct: 1190 SFHVCITSYTQFFRGLTAFTRVRWKCLVIDEMQRVKGMTERHWEAVFTLQSQQRLLLIDS 1249
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+ N+ ELW ++HF++P + + S + + +E + + RLH + +PF
Sbjct: 1250 PLHNTFLELWTMVHFLVPGIS------RPYLSSPLRAPSEESQDYYHKVVIRLHRVTQPF 1303
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR K+DVE +L+ K E ++ C L++RQK LY ED+I G L +
Sbjct: 1304 ILRRTKRDVEKQLTKKYEHVLKCRLSNRQKALY---------EDVI-LQPGTQEALKSGH 1353
Query: 326 ASNLMNLVMQFRKVCNHPELFERR 349
N+++++++ +++CNHP L E R
Sbjct: 1354 FVNVLSILVRLQRICNHPGLVEPR 1377
Score = 136 (52.9 bits), Expect = 3.1e-58, Sum P(2) = 3.1e-58
Identities = 32/96 (33%), Positives = 54/96 (56%)
Query: 463 RDAKAPLAMSCEDYVIPKLV-FEEALLCHKLTLVYDAGKLSVLDDLLKRLKASGHRVLVY 521
R+ AP P+L+ F E L +D+GKL L LL++LK+ G RVL+
Sbjct: 1866 REHAAPYFQQLRQTTAPRLLQFPELRLVQ-----FDSGKLEALAILLQKLKSEGRRVLIL 1920
Query: 522 SQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRDM 557
SQM M+D+LE F+ + ++R+D ++ +R+++
Sbjct: 1921 SQMILMLDILEMFLNFHYLTYVRIDENASSEQRQEL 1956
Score = 67 (28.6 bits), Expect = 6.5e-52, Sum P(3) = 6.5e-52
Identities = 32/121 (26%), Positives = 54/121 (44%)
Query: 416 KKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCED 475
++K ED+I G L + N+++++++ +++CNHP L E R +
Sbjct: 1331 RQKALYEDVI-LQPGTQEALKSGHFVNVLSILVRLQRICNHPGLVEPRHPGS-------S 1382
Query: 476 YVIPKLVFEEALLCHKLTLVYDAGK---LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLE 532
YV L + A L K L D K LS+ D + K + H + S+ L+E
Sbjct: 1383 YVAGPLEYPSASLILK-ALERDFWKEADLSMFDLIGLENKITRHEAELLSKKKIPRKLME 1441
Query: 533 E 533
E
Sbjct: 1442 E 1442
Score = 49 (22.3 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 363 HRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLP 400
H+L R R EG P P+ P P P P+ P
Sbjct: 12 HQLQRSRACPGSEGEEQPAHPNPPPSPAA-PFAPSASP 48
Score = 38 (18.4 bits), Expect = 6.5e-52, Sum P(3) = 6.5e-52
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 522 SQMTKMIDLLEEFMVYRKYRFMRLD-GSSKISERRDMFAVPGILT 565
SQ+ ++ D +E+ KY L+ + I + ++ + ++T
Sbjct: 2147 SQLEELADFMEQLTPIEKYALNYLELFHTSIEQEKERNSEDAVMT 2191
>UNIPROTKB|E2QWV6 [details] [associations]
symbol:EP400 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 PROSITE:PS51194 SMART:SM00717
GO:GO:0005524 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR017877
PROSITE:PS50090 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GeneTree:ENSGT00530000063427 EMBL:AAEX03014584 EMBL:AAEX03014585
EMBL:AAEX03014586 Ensembl:ENSCAFT00000010370 Uniprot:E2QWV6
Length = 3002
Score = 482 (174.7 bits), Expect = 4.9e-58, Sum P(3) = 4.9e-58
Identities = 104/275 (37%), Positives = 155/275 (56%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
S V+ P L G L+ YQ G++WLA LY + +NGILADE GLGKTVQ IAF H+A
Sbjct: 1033 SPTVKLTAPSLLYGVLRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLAC 1092
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP L++ + W+ E++R+ P K + Y GS +E K RQ W T+
Sbjct: 1093 NEGNWGPHLVVVRGCNILKWELELKRWCPGLKTLLYVGSHRELKAKRQEW------TEPN 1146
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
SF+V I Y+ + F R++W+ L++DE Q ++ + W+ + + RLLL
Sbjct: 1147 SFNVCIAPYKQFFRGYASFMRVRWRCLVIDEMQRVRGMTERHWEAVFTLRSQQRLLLIDA 1206
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH--LSRLHMILK 263
P+ N+ ELW ++HF++P + S + + A N + D H + RLH + +
Sbjct: 1207 PLHNTFLELWTMVHFLIPGI--SRPYLH------LPLKAPNDENQDYYHKVVIRLHRVTQ 1258
Query: 264 PFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
PF+LRR K+DVE +L+ K E ++ C L+SRQK LY
Sbjct: 1259 PFILRRTKRDVEKQLTKKYEHVLKCRLSSRQKALY 1293
Score = 286 (105.7 bits), Expect = 2.1e-28, Sum P(3) = 2.1e-28
Identities = 66/210 (31%), Positives = 114/210 (54%)
Query: 142 TKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLL 201
T+ SF+V I Y+ + F R++W+ L++DE Q ++ + W+ + + RLL
Sbjct: 1143 TEPNSFNVCIAPYKQFFRGYASFMRVRWRCLVIDEMQRVRGMTERHWEAVFTLRSQQRLL 1202
Query: 202 LSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH--LSRLH 259
L P+ N+ ELW ++HF++P + S + + A N + D H + RLH
Sbjct: 1203 LIDAPLHNTFLELWTMVHFLIPGI--SRPYLH------LPLKAPNDENQDYYHKVVIRLH 1254
Query: 260 MILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSI 319
+ +PF+LRR K+DVE +L+ K E ++ C L+SRQK LY ED+I G
Sbjct: 1255 RVTQPFILRRTKRDVEKQLTKKYEHVLKCRLSSRQKALY---------EDVI-LQPGTQE 1304
Query: 320 QLSNNIASNLMNLVMQFRKVCNHPELFERR 349
L + ++++++++ +++CNHP L E R
Sbjct: 1305 ALKSGHFVDVLSILLRLQRICNHPGLVEPR 1334
Score = 134 (52.2 bits), Expect = 4.9e-58, Sum P(3) = 4.9e-58
Identities = 27/68 (39%), Positives = 47/68 (69%)
Query: 491 KLTLV-YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSS 549
+L LV +D+GKL L LL++LK+ G RVL+ SQM M+D+LE F+ + ++R+D ++
Sbjct: 1762 ELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYIRIDENA 1821
Query: 550 KISERRDM 557
+R+++
Sbjct: 1822 NSEQRQEL 1829
Score = 62 (26.9 bits), Expect = 4.9e-58, Sum P(3) = 4.9e-58
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 416 KKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 463
++K ED+I G L + ++++++++ +++CNHP L E R
Sbjct: 1288 RQKALYEDVI-LQPGTQEALKSGHFVDVLSILLRLQRICNHPGLVEPR 1334
Score = 46 (21.3 bits), Expect = 3.0e-05, Sum P(3) = 3.0e-05
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 363 HRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLP 400
H+L R R EG P+ P+ P P P+ P
Sbjct: 12 HQLQRSRAFTSSEGEEQQAHPNPPQSPAT-PFAPSASP 48
Score = 39 (18.8 bits), Expect = 2.1e-28, Sum P(3) = 2.1e-28
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 92 PFLIISPASTLHNWQ---QEMERFVPDFKVVPYWGSPQERKILR 132
P L +P H W +EM+ DF W RK++R
Sbjct: 757 PKLQEAPRPKSH-WDYLLEEMQWMATDFAQERRWKMAAARKLIR 799
>UNIPROTKB|L7N089 [details] [associations]
symbol:EP400 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] GeneTree:ENSGT00530000063427 EMBL:AAEX03014584
Ensembl:ENSCAFT00000010365 Uniprot:L7N089
Length = 3110
Score = 482 (174.7 bits), Expect = 5.6e-58, Sum P(3) = 5.6e-58
Identities = 104/275 (37%), Positives = 155/275 (56%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
S V+ P L G L+ YQ G++WLA LY + +NGILADE GLGKTVQ IAF H+A
Sbjct: 1069 SPTVKLTAPSLLYGVLRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLAC 1128
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP L++ + W+ E++R+ P K + Y GS +E K RQ W T+
Sbjct: 1129 NEGNWGPHLVVVRGCNILKWELELKRWCPGLKTLLYVGSHRELKAKRQEW------TEPN 1182
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
SF+V I Y+ + F R++W+ L++DE Q ++ + W+ + + RLLL
Sbjct: 1183 SFNVCIAPYKQFFRGYASFMRVRWRCLVIDEMQRVRGMTERHWEAVFTLRSQQRLLLIDA 1242
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH--LSRLHMILK 263
P+ N+ ELW ++HF++P + S + + A N + D H + RLH + +
Sbjct: 1243 PLHNTFLELWTMVHFLIPGI--SRPYLH------LPLKAPNDENQDYYHKVVIRLHRVTQ 1294
Query: 264 PFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
PF+LRR K+DVE +L+ K E ++ C L+SRQK LY
Sbjct: 1295 PFILRRTKRDVEKQLTKKYEHVLKCRLSSRQKALY 1329
Score = 286 (105.7 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
Identities = 66/210 (31%), Positives = 114/210 (54%)
Query: 142 TKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLL 201
T+ SF+V I Y+ + F R++W+ L++DE Q ++ + W+ + + RLL
Sbjct: 1179 TEPNSFNVCIAPYKQFFRGYASFMRVRWRCLVIDEMQRVRGMTERHWEAVFTLRSQQRLL 1238
Query: 202 LSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERH--LSRLH 259
L P+ N+ ELW ++HF++P + S + + A N + D H + RLH
Sbjct: 1239 LIDAPLHNTFLELWTMVHFLIPGI--SRPYLH------LPLKAPNDENQDYYHKVVIRLH 1290
Query: 260 MILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSI 319
+ +PF+LRR K+DVE +L+ K E ++ C L+SRQK LY ED+I G
Sbjct: 1291 RVTQPFILRRTKRDVEKQLTKKYEHVLKCRLSSRQKALY---------EDVI-LQPGTQE 1340
Query: 320 QLSNNIASNLMNLVMQFRKVCNHPELFERR 349
L + ++++++++ +++CNHP L E R
Sbjct: 1341 ALKSGHFVDVLSILLRLQRICNHPGLVEPR 1370
Score = 134 (52.2 bits), Expect = 5.6e-58, Sum P(3) = 5.6e-58
Identities = 27/68 (39%), Positives = 47/68 (69%)
Query: 491 KLTLV-YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSS 549
+L LV +D+GKL L LL++LK+ G RVL+ SQM M+D+LE F+ + ++R+D ++
Sbjct: 1871 ELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYIRIDENA 1930
Query: 550 KISERRDM 557
+R+++
Sbjct: 1931 NSEQRQEL 1938
Score = 62 (26.9 bits), Expect = 5.6e-58, Sum P(3) = 5.6e-58
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 416 KKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERR 463
++K ED+I G L + ++++++++ +++CNHP L E R
Sbjct: 1324 RQKALYEDVI-LQPGTQEALKSGHFVDVLSILLRLQRICNHPGLVEPR 1370
Score = 46 (21.3 bits), Expect = 3.3e-05, Sum P(3) = 3.3e-05
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 363 HRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLP 400
H+L R R EG P+ P+ P P P+ P
Sbjct: 12 HQLQRSRAFTSSEGEEQQAHPNPPQSPAT-PFAPSASP 48
Score = 39 (18.8 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 92 PFLIISPASTLHNWQ---QEMERFVPDFKVVPYWGSPQERKILR 132
P L +P H W +EM+ DF W RK++R
Sbjct: 793 PKLQEAPRPKSH-WDYLLEEMQWMATDFAQERRWKMAAARKLIR 835
>TAIR|locus:2051678 [details] [associations]
symbol:ETL1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC005936 HOGENOM:HOG000172362
KO:K14439 EMBL:AY059857 EMBL:BT002576 IPI:IPI00520453 PIR:H84432
RefSeq:NP_178318.1 UniGene:At.13358 ProteinModelPortal:Q9ZUL5
SMR:Q9ZUL5 IntAct:Q9ZUL5 PaxDb:Q9ZUL5 PRIDE:Q9ZUL5
EnsemblPlants:AT2G02090.1 GeneID:814740 KEGG:ath:AT2G02090
TAIR:At2g02090 InParanoid:Q9ZUL5 OMA:CAKISAD PhylomeDB:Q9ZUL5
ProtClustDB:CLSN2683669 ArrayExpress:Q9ZUL5 Genevestigator:Q9ZUL5
Uniprot:Q9ZUL5
Length = 763
Score = 456 (165.6 bits), Expect = 1.5e-57, Sum P(3) = 1.5e-57
Identities = 117/327 (35%), Positives = 180/327 (55%)
Query: 37 FRGNLKHYQLKGMNWLANLYDQGING-ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLI 95
F+ LK YQL G+N+L LY +GI G ILADEMGLGKT+Q+I +L ++ + GP L+
Sbjct: 209 FQPILKPYQLVGVNFLLLLYKKGIEGAILADEMGLGKTIQAITYLTLLSRLNNDPGPHLV 268
Query: 96 ISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQ 155
+ PAS L NW++E+ ++ P F V+ Y G+ + R+ + K F+V++ Y
Sbjct: 269 VCPASVLENWERELRKWCPSFTVLQYHGAARAA-YSRELNSLSKAG-KPPPFNVLLVCYS 326
Query: 156 LVV-------SDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRN---RLLLSGT 205
L D K R +W +++DEA A+K +S RWK L+ + RN RL+L+GT
Sbjct: 327 LFERHSEQQKDDRKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVA-RNANQRLMLTGT 385
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+QN + ELW+LL F++P +F + N K + +AE D ++R+ IL PF
Sbjct: 386 PLQNDLHELWSLLEFMLPDIFTTE---NVDLKKLL--NAE-----DTELITRMKSILGPF 435
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIED---LIHSSSGGSIQLS 322
+LRR+K DV +L KI+ + Y + +Q+ Y ++ + L+ SS L+
Sbjct: 436 ILRRLKSDVMQQLVPKIQRVEYVLMERKQEDAYKEAIEEYRAASQARLVKLSSKSLNSLA 495
Query: 323 NNIASN-LMNLVMQFRKVCNHPELFER 348
+ + N QFRK+ NHP L R
Sbjct: 496 KALPKRQISNYFTQFRKIANHPLLIRR 522
Score = 128 (50.1 bits), Expect = 1.5e-57, Sum P(3) = 1.5e-57
Identities = 32/85 (37%), Positives = 52/85 (61%)
Query: 475 DYVIPKLVFEEALLCHKLTL----VYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDL 530
D+ I +L+F+ + K TL V + K L +LL +K SGHRVL++SQ T M+D+
Sbjct: 560 DFRIHQLLFQYGVNDTKGTLSDKHVMLSAKCRTLAELLPSMKKSGHRVLIFSQWTSMLDI 619
Query: 531 LEEFMVYRKYRFMRLDGSSKISERR 555
LE + + RLDGS+++++R+
Sbjct: 620 LEWTLDVIGVTYRRLDGSTQVTDRQ 644
Score = 55 (24.4 bits), Expect = 1.5e-57, Sum P(3) = 1.5e-57
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 443 LMNLVMQFRKVCNHPELFER 462
+ N QFRK+ NHP L R
Sbjct: 503 ISNYFTQFRKIANHPLLIRR 522
Score = 37 (18.1 bits), Expect = 5.8e-05, Sum P(3) = 5.8e-05
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 143 KDASFHVVITSYQLVVSDF 161
+D+ F ++ YQLV +F
Sbjct: 205 EDSDFQPILKPYQLVGVNF 223
>DICTYBASE|DDB_G0280705 [details] [associations]
symbol:DDB_G0280705 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
dictyBase:DDB_G0280705 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0003682 EMBL:AAFI02000037
GO:GO:0004003 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
KO:K14437 RefSeq:XP_641133.1 ProteinModelPortal:Q54UZ8
EnsemblProtists:DDB0220644 GeneID:8622691 KEGG:ddi:DDB_G0280705
InParanoid:Q54UZ8 OMA:YPHERID ProtClustDB:CLSZ2846801
Uniprot:Q54UZ8
Length = 2373
Score = 440 (159.9 bits), Expect = 2.1e-56, Sum P(2) = 2.1e-56
Identities = 103/285 (36%), Positives = 168/285 (58%)
Query: 34 PGLF-RGN-LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWG 91
P F +GN L+ YQL+G+NWL+ + + N IL DEMGLGKTVQS++ L + + + + G
Sbjct: 500 PDYFTKGNKLRPYQLEGLNWLSFCWHEQRNSILGDEMGLGKTVQSVSILETLRKVHGIRG 559
Query: 92 PFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQF-WDMKN----------- 139
PFL+++P +T+ +W++E E + D + Y S R I R + + +K+
Sbjct: 560 PFLVVAPLTTIPHWKREFENWT-DMNALVYHDSGAGRPICRNYEFYLKDKDGGGGGASGG 618
Query: 140 LHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNR 199
K F+V+IT+Y++ ++D + +RI W+YL++DEA +K+ S L +S +
Sbjct: 619 ASGKITKFNVLITTYEMAITDRTHLSRIPWKYLVIDEAHRLKNKSCKLTIELRSYSFDHL 678
Query: 200 LLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLH 259
LLL+GTP+QN+ ELW+LL+F+ P F + D+F + + + K S + L
Sbjct: 679 LLLTGTPLQNNTQELWSLLNFLDPKQFSNLDQF-------LLEYGDLKES---SQVESLQ 728
Query: 260 MILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKK 304
ILKP++LRR+K+ VE ++ K E +V LT+ QK Y A+ +K
Sbjct: 729 AILKPYLLRRMKERVEKSIAPKEETIVEVELTTVQKKYYRAIYEK 773
Score = 191 (72.3 bits), Expect = 2.1e-56, Sum P(2) = 2.1e-56
Identities = 43/128 (33%), Positives = 76/128 (59%)
Query: 437 NNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVY 496
+N +L+N++M+ RK CNHP L + + ++ +D + KL+ +A
Sbjct: 784 SNQGPSLLNIMMELRKCCNHPYLTKGVEQSETSSIKDKDQIFQKLI--QA---------- 831
Query: 497 DAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR- 555
+GKL ++D LL +LK H+VL++SQM ++D+L++++ YR Y R+DGS K ++R+
Sbjct: 832 -SGKLVLIDKLLPKLKLGNHKVLIFSQMVSVLDILDDYLTYRGYPHERIDGSIKGNDRQA 890
Query: 556 --DMFAVP 561
D F+ P
Sbjct: 891 AIDRFSKP 898
Score = 140 (54.3 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 34/95 (35%), Positives = 53/95 (55%)
Query: 251 DERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDL 310
+ + L ILKP++LRR+K+ VE ++ K E +V LT+ QK Y A+ +K +
Sbjct: 720 ESSQVESLQAILKPYLLRRMKERVEKSIAPKEETIVEVELTTVQKKYYRAIYEK----NF 775
Query: 311 IHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPEL 345
GG +N +L+N++M+ RK CNHP L
Sbjct: 776 SFLRKGGK----SNQGPSLLNIMMELRKCCNHPYL 806
Score = 37 (18.1 bits), Expect = 3.2e-40, Sum P(2) = 3.2e-40
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 319 IQLSNNIASNLMNLVMQFRKVCNHPEL-FERRDAKAPLAMSCEDYHRLYRGRQMEREEGT 377
IQ S + L++ ++ K+ NH L F + + + +DY YRG ER +G+
Sbjct: 829 IQASGKLV--LIDKLLPKLKLGNHKVLIFSQMVSVLDIL---DDY-LTYRGYPHERIDGS 882
Query: 378 I 378
I
Sbjct: 883 I 883
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 436 (158.5 bits), Expect = 3.0e-54, Sum P(2) = 3.0e-54
Identities = 112/321 (34%), Positives = 170/321 (52%)
Query: 35 GLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFL 94
GL L+ YQL G+NWL Y IL DEMGLGKT Q+I+ L ++ + L
Sbjct: 40 GLTGIKLRPYQLDGVNWLVQCYQVQHGCILGDEMGLGKTCQTISLLLYLTKKLTNKERSL 99
Query: 95 IISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSY 154
I+ P S L NW++E+ERF P V Y G+ +ER L+Q NL + + F V++T+Y
Sbjct: 100 ILCPLSVLSNWKEELERFAPGLSFVTYVGNKEERYKLQQ-----NLK-EQSHFRVLLTTY 153
Query: 155 QLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAEL 214
++ + D + W L++DEA +K+ +S+ ++ L LLL+GTPIQNS+ EL
Sbjct: 154 EICLKDAAFLKFFDWAALVVDEAHRLKNQNSLLYETLTELPVGFSLLLTGTPIQNSLQEL 213
Query: 215 WALLHFIMPSMFDSHD--EFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKK 272
++LL FI P +F EF E++ +E +E LH +L+PF+LRR+K
Sbjct: 214 YSLLSFIEPDIFPRKQVKEFVEYYQA-VEKESEPA--------KELHNLLQPFLLRRVKS 264
Query: 273 DVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNL 332
+V +L K+E+++Y +++ Q+ Y A+ K D +G + L N + L
Sbjct: 265 EVTADLPKKVEVVLYHGMSALQRKYYKAILTKDL--DAFEGGTGRKVMLQN-VLIQLRKC 321
Query: 333 VMQ---FRKVCNHPELFERRD 350
V F V PE FE D
Sbjct: 322 VAHPYLFNGV--EPEPFEIGD 340
Score = 160 (61.4 bits), Expect = 3.0e-54, Sum P(2) = 3.0e-54
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 494 LVYDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISE 553
+V +GKL +LD LL L GHRVL++SQMTK++D+L+++M YR Y + RLDGS + E
Sbjct: 342 IVEASGKLCLLDKLLSFLYDGGHRVLLFSQMTKLLDILQDYMDYRGYSYERLDGSVRGEE 401
Query: 554 R 554
R
Sbjct: 402 R 402
Score = 41 (19.5 bits), Expect = 9.7e-42, Sum P(2) = 9.7e-42
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 360 EDYHRLYRGRQMEREEGTILPEFPHV 385
+DY YRG ER +G++ E H+
Sbjct: 380 QDYMD-YRGYSYERLDGSVRGEERHL 404
>UNIPROTKB|F6XTU7 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AAEX03026896
Ensembl:ENSCAFT00000029649 Uniprot:F6XTU7
Length = 1075
Score = 562 (202.9 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 123/326 (37%), Positives = 194/326 (59%)
Query: 5 RHAVEVEKQRSQQFGSTTPSFSTEVERPQ--PGLFRGN-LKHYQLKGMNWLANLYDQGIN 61
RH E++ ++ S + S R + P +G L+ YQ++G+NWL +LY+ G+N
Sbjct: 145 RHR-RTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVN 203
Query: 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPY 121
GILADEMGLGKT+Q+IA L ++ ++ GP +++ P STL+NW E +R+VP +V+ +
Sbjct: 204 GILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRVICF 263
Query: 122 WGSPQERK-ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 180
G R +R +M + V +TSY++V+ + F + W+YL++DEA I
Sbjct: 264 VGDKDARAAFIRD--EMM-----PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRI 316
Query: 181 KSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI 240
K+ S +++ F NRLLL+GTP+QN++ ELWALL+F++P +F+S D+F+ WF
Sbjct: 317 KNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWF---- 372
Query: 241 ESHAENKTSI-DERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYS 299
+ K + D++ + RLH +LKPF+LRRIK DVE L K EI VY L+ Q+ +
Sbjct: 373 ----DTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKVYLGLSKMQREWFV 428
Query: 300 ALKKKIKIEDLIHSSSGGSIQLSNNI 325
L I E+ +S+ + + N I
Sbjct: 429 ILAFFIS-ENSNNSNKNHKLDILNVI 453
>ASPGD|ASPL0000037473 [details] [associations]
symbol:AN2973 species:162425 "Emericella nidulans"
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0070870 "heterochromatin maintenance involved in chromatin
silencing" evidence=IEA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0070869 "heterochromatin
assembly involved in chromatin silencing" evidence=IEA] [GO:0006348
"chromatin silencing at telomere" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031934 "mating-type region heterochromatin" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 EMBL:BN001306 EMBL:AACD01000051
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
RefSeq:XP_660577.1 ProteinModelPortal:Q5B907
EnsemblFungi:CADANIAT00010107 GeneID:2874181 KEGG:ani:AN2973.2
OMA:QQVGINW Uniprot:Q5B907
Length = 1107
Score = 462 (167.7 bits), Expect = 5.2e-53, Sum P(2) = 5.2e-53
Identities = 110/322 (34%), Positives = 181/322 (56%)
Query: 33 QPGLFRGNLK--HYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVW 90
QPG+ +LK +YQ+ G+NWL+ L++ ++ ILAD+MGLGKT Q IAFL H+ E +
Sbjct: 554 QPGIMAEDLKMKNYQIVGINWLSLLFENELSCILADDMGLGKTCQVIAFLAHLYEK-GIK 612
Query: 91 GPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVV 150
GP L++ P+ST+ NW +E ++F P V+PY+ R +R+ + +VV
Sbjct: 613 GPHLVVVPSSTIENWLREFQKFCPTLSVMPYYADQNVRAQIRE-----QIEGNRDDINVV 667
Query: 151 ITSYQLVVS--DFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQ 208
IT+Y + D + + + + DE +KSS+S+ ++ L+ R RLLL+GTP+Q
Sbjct: 668 ITTYTIAKGKVDAHFLRNMDFCACVYDEGHMLKSSTSVLYEKLIRIRARFRLLLTGTPLQ 727
Query: 209 NSMAELWALLHFIMPSMFDSH-DEFNEWFSKDIESHAENKTSI-DERHLSRLHMILKPFM 266
N++ EL +LL FI+P +F D+ FS ++ E+ +++ + + R +LKPF+
Sbjct: 728 NNLQELASLLGFILPKVFQERKDDLQYIFSNKAKTVDESHSALLSAQRIERAKSMLKPFV 787
Query: 267 LRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIA 326
LRR K V +L KI + YC + + Q+ +Y K ++K L+ + G + N A
Sbjct: 788 LRRKKHQVI-DLPAKISRVEYCEMNAAQREIYEHEKNEVK--KLLEDRAAGK-KTGNKSA 843
Query: 327 SNLMNLVMQFRKVCNHPELFER 348
N++M+ R+ HP L R
Sbjct: 844 ----NILMKLRQAAIHPLLHRR 861
Score = 126 (49.4 bits), Expect = 5.2e-53, Sum P(2) = 5.2e-53
Identities = 24/61 (39%), Positives = 42/61 (68%)
Query: 497 DAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRD 556
D+GK+ L +LL+R K +G RVLV+SQ +D+LE + + +F+RLDG++ + +R+
Sbjct: 924 DSGKVDKLCELLRRFKENGDRVLVFSQFRLAMDILEVVLENQHLKFVRLDGTTSVEDRQS 983
Query: 557 M 557
+
Sbjct: 984 I 984
Score = 67 (28.6 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 42/170 (24%), Positives = 75/170 (44%)
Query: 343 PELF-ERRDAKAPL----AMSCEDYHR-LYRGRQMEREEGTILPEFPHVPRDPVI-LPQQ 395
P++F ER+D + A + ++ H L +++ER + + P + VI LP +
Sbjct: 742 PKVFQERKDDLQYIFSNKAKTVDESHSALLSAQRIERAKSMLKPFVLRRKKHQVIDLPAK 801
Query: 396 PTYLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCN 455
+ + C + Q + K ++K L+ + G + N A N++M+ R+
Sbjct: 802 ISRVEYCEMNAAQREIYEHEKNEVK--KLLEDRAAGK-KTGNKSA----NILMKLRQAAI 854
Query: 456 HPELFERR-DAKAPLAMS--C---EDYVI--PKLVFEEA-----LLCHKL 492
HP L R + K MS C E + PKL++E+ CH+L
Sbjct: 855 HPLLHRRHYNDKILTKMSKACLQEEKWAESDPKLIYEDLQPYNDFECHQL 904
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 416 (151.5 bits), Expect = 7.7e-53, Sum P(2) = 7.7e-53
Identities = 92/269 (34%), Positives = 155/269 (57%)
Query: 36 LFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLI 95
L G LK +Q+KG+N++A + + N +LADEMGLGKTVQ++AF+ + GPF++
Sbjct: 441 LHNGQLKEFQVKGVNFMAFNWVKNRNVVLADEMGLGKTVQTVAFISWLRHVRRQQGPFVV 500
Query: 96 ISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQ 155
+ P ST+ +W + + + PD V Y G+ R +L+++ M + + + F+V++T+Y+
Sbjct: 501 VVPLSTMPSWAETFDNWSPDLNYVVYNGNEASRNVLKEYELMVDGNPRRPKFNVLLTTYE 560
Query: 156 LVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELW 215
V+ D + ++ WQ++ +DEA +K+ S + L F+ RLL++GTPIQN++AEL
Sbjct: 561 YVLVDSSFLSQFNWQFMAVDEAHRLKNRDSQLYIKLQEFNSPARLLITGTPIQNNLAELS 620
Query: 216 ALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVE 275
ALL F+ P + + + D+ S A ++ L+ L + PFMLRR K VE
Sbjct: 621 ALLDFLNPGLVNVDADM------DLNSEAASEK------LAELTKAISPFMLRRTKTKVE 668
Query: 276 NELSDKIEIMVYCPLTSRQKLLYSALKKK 304
++L K E ++ L+ Q Y + K
Sbjct: 669 SDLPPKTEKIIRVELSDVQLEYYKNILTK 697
Score = 194 (73.4 bits), Expect = 7.7e-53, Sum P(2) = 7.7e-53
Identities = 44/114 (38%), Positives = 68/114 (59%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N++M+ +K NHP +F P S E ++ E +L L+ +GK+
Sbjct: 712 SLLNIMMELKKASNHPFMF-------P---SAETKILEGSTRREDVL---RALITSSGKM 758
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR 555
+LD LL +LK GHRVL++SQM KM+D+L ++M YR Y + RLDG+ + RR
Sbjct: 759 MLLDQLLAKLKRDGHRVLIFSQMVKMLDILGDYMEYRGYTYQRLDGTIPSASRR 812
Score = 43 (20.2 bits), Expect = 5.7e-37, Sum P(2) = 5.7e-37
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 500 KLSVLDDLLKRLKASGHRVLVYSQMTKMID 529
K S+L+ +++ KAS H + S TK+++
Sbjct: 710 KQSLLNIMMELKKASNHPFMFPSAETKILE 739
Score = 37 (18.1 bits), Expect = 2.4e-36, Sum P(2) = 2.4e-36
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 361 DYHRLYRGRQMEREEGTI 378
DY YRG +R +GTI
Sbjct: 790 DYME-YRGYTYQRLDGTI 806
>POMBASE|SPAC25A8.01c [details] [associations]
symbol:fft3 "fun thirty related protein Fft3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0003677 "DNA binding" evidence=ISM]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0032017 "positive regulation of Ran
protein signal transduction" evidence=IGI] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC25A8.01c GO:GO:0005524 EMBL:CU329670
GO:GO:0003677 GO:GO:0006338 GO:GO:0000790 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 GO:GO:0008094 OrthoDB:EOG4BCHW4 EMBL:AB027947
PIR:T38371 RefSeq:NP_593617.1 ProteinModelPortal:O42861
STRING:O42861 EnsemblFungi:SPAC25A8.01c.1 GeneID:2541531
KEGG:spo:SPAC25A8.01c HOGENOM:HOG000195581 OMA:NRASERY
NextBio:20802628 GO:GO:0032017 Uniprot:O42861
Length = 922
Score = 472 (171.2 bits), Expect = 9.9e-53, Sum P(2) = 9.9e-53
Identities = 116/349 (33%), Positives = 196/349 (56%)
Query: 10 VEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLK--HYQLKGMNWLANLYDQGINGILADE 67
V + + FG TP+ S+ + P P F ++K YQ+ G+NWL LY+ + GILADE
Sbjct: 357 VNFDQMKSFG--TPANSSFITTP-PASFSPDIKLQDYQIIGINWLYLLYELKLAGILADE 413
Query: 68 MGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQE 127
MGLGKT Q+IAF + + ++ GP L+I+PAST+ NW +E +F P K+ Y+GS E
Sbjct: 414 MGLGKTCQTIAFFSLLMDK-NINGPHLVIAPASTMENWLREFAKFCPKLKIELYYGSQVE 472
Query: 128 RKILRQFWDMKNLHTKDASFHVVITSYQLVVS---DFKYFNRIKWQYLILDEAQAIKSSS 184
R+ +R+ +++ S++V++T+Y+L + D + K+ + DE +K+ +
Sbjct: 473 REEIRE-----RINSNKDSYNVMLTTYRLAATSKADRLFLRNQKFNVCVYDEGHYLKNRA 527
Query: 185 SMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFD-SHDEFNEWFS--KDIE 241
S R++ L+ R+LL+GTP+QN++ EL +LL FI+P +FD + F+ K E
Sbjct: 528 SERYRHLMSIPADFRVLLTGTPLQNNLKELISLLAFILPHVFDYGLKSLDVIFTMKKSPE 587
Query: 242 SHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSAL 301
S E + + E+ +SR M++ PF+LRR K V + L K I+ +C + ++ Y
Sbjct: 588 SDFE-RALLSEQRVSRAKMMMAPFVLRRKKSQVLDALPKKTRIIEFCEFSEEERRRYDDF 646
Query: 302 KKKIKIEDLIHSS-SGGSIQLSNNIASNLMN---LVMQFRKVCNHPELF 346
K + L+ + ++ + N+A +++Q RK+ +HP LF
Sbjct: 647 ASKQSVNSLLDENVMKTNLDTNANLAKKKSTAGFVLVQLRKLADHPMLF 695
Score = 109 (43.4 bits), Expect = 9.9e-53, Sum P(2) = 9.9e-53
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 497 DAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERRD 556
DA K+ L LL +G RV+++SQ T+++D+L+ M +F+R DGS+++ R+D
Sbjct: 759 DATKVRKLKKLLTNAVENGDRVVLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQD 818
Query: 557 M 557
+
Sbjct: 819 L 819
>UNIPROTKB|F1N8K8 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:AADN02065411
EMBL:AADN02065412 EMBL:AADN02065413 IPI:IPI00588290
Ensembl:ENSGALT00000023601 ArrayExpress:F1N8K8 Uniprot:F1N8K8
Length = 1804
Score = 419 (152.6 bits), Expect = 9.4e-52, Sum P(2) = 9.4e-52
Identities = 101/302 (33%), Positives = 167/302 (55%)
Query: 10 VEKQRSQQFGSTTPSFSTEV--ERP-------QPGLFRGN----LKHYQLKGMNWLANLY 56
+++ S+ TTP +V +RP QP G+ L+ YQL G+ WLA+ +
Sbjct: 434 IDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHESLELRDYQLNGL-WLAHSW 492
Query: 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDF 116
+G + ILADEMGLGKT+Q+I+FL ++ + ++GPFL++ P STL +WQ+E++ + P
Sbjct: 493 CKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQM 552
Query: 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDE 176
V Y G R ++R + + TK F++++T+Y++++ D + + W ++ +DE
Sbjct: 553 NAVVYLGDITSRNMIRTH-EWMHPQTKRLKFNILLTTYEILLKDKSFLGGLNWAFIGVDE 611
Query: 177 AQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWF 236
A +K+ S+ +K L+ + P ELW LLHFIMP F S ++F E
Sbjct: 612 AHRLKNDDSLLYKTLIDLVTIDS---DTAPSCTIPQELW-LLHFIMPEKFSSWEDFEE-- 665
Query: 237 SKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKL 296
H + + E + LH L+PF+LRR+KKDVE L K+E ++ +++ QK
Sbjct: 666 -----EHGKGR----EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQ 716
Query: 297 LY 298
Y
Sbjct: 717 YY 718
Score = 178 (67.7 bits), Expect = 9.4e-52, Sum P(2) = 9.4e-52
Identities = 47/115 (40%), Positives = 68/115 (59%)
Query: 436 SNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLV 495
S S +N++M+ +K CNH L + D E Y K +EAL H L+
Sbjct: 733 SKGSTSGFLNIMMELKKCCNHCYLIKPPDDN-------EFY--NK---QEALQ-H---LI 776
Query: 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
+GKL +LD LL RL+ G+RVL++SQM +M+D+L E++ YR++ F RLDGS K
Sbjct: 777 RSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 831
Score = 37 (18.1 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 405 ESTQNMVSPALKKKIKIEDLIHSSSG 430
+S + S KKK K ED S SG
Sbjct: 128 DSADDSSSETKKKKHKDEDWQMSGSG 153
>SGD|S000000017 [details] [associations]
symbol:FUN30 "Snf2p family member with ATP-dependent
chromatin remodeling activity" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0070870
"heterochromatin maintenance involved in chromatin silencing"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=IMP] [GO:0031934 "mating-type region
heterochromatin" evidence=IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IMP] [GO:0006348 "chromatin silencing
at telomere" evidence=IMP] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0070869 "heterochromatin assembly
involved in chromatin silencing" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SGD:S000000017 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0000775 EMBL:L05146 EMBL:BK006935 GO:GO:0003677 GO:GO:0003682
GO:GO:0030466 GO:GO:0000183 GO:GO:0006348 GO:GO:0004386
GO:GO:0031934 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0070869 GO:GO:0000729
GO:GO:0008094 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
PIR:S22266 RefSeq:NP_009383.1 ProteinModelPortal:P31380 SMR:P31380
DIP:DIP-2541N IntAct:P31380 MINT:MINT-425278 STRING:P31380
PaxDb:P31380 PeptideAtlas:P31380 EnsemblFungi:YAL019W GeneID:851214
KEGG:sce:YAL019W CYGD:YAL019w GeneTree:ENSGT00630000089890
OMA:KIEPYYG NextBio:968097 Genevestigator:P31380 GermOnline:YAL019W
GO:GO:0070870 Uniprot:P31380
Length = 1131
Score = 468 (169.8 bits), Expect = 1.0e-51, Sum P(2) = 1.0e-51
Identities = 116/321 (36%), Positives = 177/321 (55%)
Query: 40 NLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPA 99
+LK YQ G+NWL LY ++ ILAD+MGLGKT Q I+F ++ + + GP L++ P+
Sbjct: 571 SLKDYQQTGINWLNLLYQNKMSCILADDMGLGKTCQVISFFAYLKQINEP-GPHLVVVPS 629
Query: 100 STLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVS 159
STL NW +E ++F P K+ PY+GS QER+ LR L + V++T+Y L
Sbjct: 630 STLENWLREFQKFAPALKIEPYYGSLQEREELRDI-----LERNAGKYDVIVTTYNLAAG 684
Query: 160 ---DFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWA 216
D + + ++ DE +K+S+S R+ L+ RLLL+GTP+QN++ EL +
Sbjct: 685 NKYDVSFLKNRNFNVVVYDEGHMLKNSTSERFAKLMKIRANFRLLLTGTPLQNNLKELMS 744
Query: 217 LLHFIMPSMFDSHDE-FNEWFSKDIESHAENKTS---IDERHLSRLHMILKPFMLRRIKK 272
LL FIMP++F S E F+ F + ++ +NK + + ++R ++KPF+LRR K
Sbjct: 745 LLEFIMPNLFISKKESFDAIFKQRAKTTDDNKNHNPLLAQEAITRAKTMMKPFILRRRKD 804
Query: 273 DVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSS--SGGSI-----QLSNNI 325
V L K + YC L + QK +Y K+I+I L H G + + S
Sbjct: 805 QVLKHLPPKHTHIQYCELNAIQKKIYD---KEIQIV-LEHKRMIKDGELPKDAKEKSKLQ 860
Query: 326 ASNLMNLVMQFRKVCNHPELF 346
+S+ NL+M RK HP LF
Sbjct: 861 SSSSKNLIMALRKASLHPLLF 881
Score = 108 (43.1 bits), Expect = 1.0e-51, Sum P(2) = 1.0e-51
Identities = 21/59 (35%), Positives = 40/59 (67%)
Query: 498 AGKLSVLDDLLKRLKASGH-RVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR 555
+GK+ L LLK + +VL++S T+++D+LE + Y+F+RLDGS+++++R+
Sbjct: 948 SGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILEMVLSTLDYKFLRLDGSTQVNDRQ 1006
>UNIPROTKB|A7E2D7 [details] [associations]
symbol:EP400 "E1A-binding protein p400" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 Pfam:PF00176
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
EMBL:AC137590 EMBL:AC137632 IPI:IPI00798339 UniGene:Hs.595201
HGNC:HGNC:11958 HOVERGEN:HBG051488 ChiTaRS:EP400 EMBL:AC131009
EMBL:BC150291 STRING:A7E2D7 Ensembl:ENST00000542457
HOGENOM:HOG000293317 Uniprot:A7E2D7
Length = 1731
Score = 515 (186.3 bits), Expect = 1.0e-51, Sum P(2) = 1.0e-51
Identities = 104/273 (38%), Positives = 157/273 (57%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
+T V+ P L G L+ YQ G++WLA LY + +NGILADE GLGKTVQ IAF H+A
Sbjct: 1040 TTSVKFNAPSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLAC 1099
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP L++ + + W+ E++R+ P K++ Y GS +E K RQ W N
Sbjct: 1100 NEGNWGPHLVVVRSCNILKWELELKRWCPGLKILSYIGSHRELKAKRQEWAEPN------ 1153
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
SFHV ITSY F R++W+ L++DE Q +K + W+ + + RLLL +
Sbjct: 1154 SFHVCITSYTQFFRGLTAFTRVRWKCLVIDEMQRVKGMTERHWEAVFTLQSQQRLLLIDS 1213
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+ N+ ELW ++HF++P + + S + + +E + + RLH + +PF
Sbjct: 1214 PLHNTFLELWTMVHFLVPGIS------RPYLSSPLRAPSEESQDYYHKVVIRLHRVTQPF 1267
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLY 298
+LRR K+DVE +L+ K E ++ C L++RQK LY
Sbjct: 1268 ILRRTKRDVEKQLTKKYEHVLKCRLSNRQKALY 1300
Score = 313 (115.2 bits), Expect = 2.9e-24, P = 2.9e-24
Identities = 66/204 (32%), Positives = 112/204 (54%)
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
SFHV ITSY F R++W+ L++DE Q +K + W+ + + RLLL +
Sbjct: 1154 SFHVCITSYTQFFRGLTAFTRVRWKCLVIDEMQRVKGMTERHWEAVFTLQSQQRLLLIDS 1213
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+ N+ ELW ++HF++P + + S + + +E + + RLH + +PF
Sbjct: 1214 PLHNTFLELWTMVHFLVPGIS------RPYLSSPLRAPSEESQDYYHKVVIRLHRVTQPF 1267
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNI 325
+LRR K+DVE +L+ K E ++ C L++RQK LY ED+I G L +
Sbjct: 1268 ILRRTKRDVEKQLTKKYEHVLKCRLSNRQKALY---------EDVI-LQPGTQEALKSGH 1317
Query: 326 ASNLMNLVMQFRKVCNHPELFERR 349
N+++++++ +++CNHP L E R
Sbjct: 1318 FVNVLSILVRLQRICNHPGLVEPR 1341
Score = 67 (28.6 bits), Expect = 1.0e-51, Sum P(2) = 1.0e-51
Identities = 32/121 (26%), Positives = 54/121 (44%)
Query: 416 KKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCED 475
++K ED+I G L + N+++++++ +++CNHP L E R +
Sbjct: 1295 RQKALYEDVI-LQPGTQEALKSGHFVNVLSILVRLQRICNHPGLVEPRHPGS-------S 1346
Query: 476 YVIPKLVFEEALLCHKLTLVYDAGK---LSVLDDLLKRLKASGHRVLVYSQMTKMIDLLE 532
YV L + A L K L D K LS+ D + K + H + S+ L+E
Sbjct: 1347 YVAGPLEYPSASLILK-ALERDFWKEADLSMFDLIGLENKITRHEAELLSKKKIPRKLME 1405
Query: 533 E 533
E
Sbjct: 1406 E 1406
>UNIPROTKB|F1NP27 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02065411 EMBL:AADN02065412
EMBL:AADN02065413 IPI:IPI00591777 Ensembl:ENSGALT00000024661
ArrayExpress:F1NP27 Uniprot:F1NP27
Length = 1803
Score = 416 (151.5 bits), Expect = 6.3e-51, Sum P(2) = 6.3e-51
Identities = 100/302 (33%), Positives = 167/302 (55%)
Query: 10 VEKQRSQQFGSTTPSFSTEV--ERP-------QPGLFRGN----LKHYQLKGMNWLANLY 56
+++ S+ TTP +V +RP QP G+ L+ YQL G+ WLA+ +
Sbjct: 434 IDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHESLELRDYQLNGL-WLAHSW 492
Query: 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDF 116
+G + ILADEMGLGKT+Q+I+FL ++ + ++GPFL++ P STL +WQ+E++ + P
Sbjct: 493 CKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQM 552
Query: 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDE 176
V Y G R ++R + + TK F++++T+Y++++ D + + W ++ +DE
Sbjct: 553 NAVVYLGDITSRNMIRTH-EWMHPQTKRLKFNILLTTYEILLKDKSFLGGLNWAFIGVDE 611
Query: 177 AQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWF 236
A +K+ S+ +K L+ + P ELW+L HFIMP F S ++F E
Sbjct: 612 AHRLKNDDSLLYKTLIDLVTIDS---DTAPSCTIPQELWSL-HFIMPEKFSSWEDFEE-- 665
Query: 237 SKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKL 296
H + + E + LH L+PF+LRR+KKDVE L K+E ++ +++ QK
Sbjct: 666 -----EHGKGR----EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQ 716
Query: 297 LY 298
Y
Sbjct: 717 YY 718
Score = 178 (67.7 bits), Expect = 6.3e-51, Sum P(2) = 6.3e-51
Identities = 47/115 (40%), Positives = 68/115 (59%)
Query: 436 SNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLV 495
S S +N++M+ +K CNH L + D E Y K +EAL H L+
Sbjct: 733 SKGSTSGFLNIMMELKKCCNHCYLIKPPDDN-------EFY--NK---QEALQ-H---LI 776
Query: 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
+GKL +LD LL RL+ G+RVL++SQM +M+D+L E++ YR++ F RLDGS K
Sbjct: 777 RSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 831
Score = 37 (18.1 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 405 ESTQNMVSPALKKKIKIEDLIHSSSG 430
+S + S KKK K ED S SG
Sbjct: 128 DSADDSSSETKKKKHKDEDWQMSGSG 153
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 521 (188.5 bits), Expect = 5.9e-50, Sum P(2) = 5.9e-50
Identities = 138/439 (31%), Positives = 230/439 (52%)
Query: 10 VEKQRSQQFGSTTPSFSTEV--ERP-------QPGLFRGN----LKHYQLKGMNWLANLY 56
+++ S+ TTP +V +RP QP G+ L+ YQL G+NWLA+ +
Sbjct: 435 IDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSW 494
Query: 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDF 116
+G + ILADEMGLGKT+Q+I+FL ++ + ++GPFL++ P STL +WQ+E++ +
Sbjct: 495 CKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM 554
Query: 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDE 176
V Y G R ++R + + TK F++++T+Y++++ D + + W ++ +DE
Sbjct: 555 NAVVYLGDINSRNMIRTH-EWMHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDE 613
Query: 177 AQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWF 236
A +K+ S+ +K L+ F +RLL++GTP+QNS+ ELW+LLHFIMP F S ++F E
Sbjct: 614 AHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE-- 671
Query: 237 SKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKL 296
H + + E + LH L+PF+LRR+KKDVE L K+E ++ +++ QK
Sbjct: 672 -----EHGKGR----EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQ 722
Query: 297 LYS-ALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQ--FRKVCNHPELFERRDAKA 353
Y L + K + S GS NI L K ++ E + +++A
Sbjct: 723 YYKWILTRNYKA---LSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQ 779
Query: 354 PLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSP 413
L S L + RE G + F + R IL + Y F +
Sbjct: 780 HLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPF-----QRLDG 834
Query: 414 ALKKKIKIEDLIHSSSGGS 432
++K +++ + L H ++ GS
Sbjct: 835 SIKGELRKQALDHFNAEGS 853
Score = 178 (67.7 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 47/115 (40%), Positives = 68/115 (59%)
Query: 436 SNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLV 495
S S +N++M+ +K CNH L + D E Y K +EAL H L+
Sbjct: 739 SKGSTSGFLNIMMELKKCCNHCYLIKPPDNN-------EFY--NK---QEALQ-H---LI 782
Query: 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
+GKL +LD LL RL+ G+RVL++SQM +M+D+L E++ YR++ F RLDGS K
Sbjct: 783 RSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 837
Score = 44 (20.5 bits), Expect = 5.9e-50, Sum P(2) = 5.9e-50
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 497 DAGKLSVLDDLLKRLKASGHRVLVYSQMT----KMIDLLEEFMVYRKYRFMRLDGSSK-I 551
D K SV+ D + ASG V + + K + +E M K +LD K +
Sbjct: 1379 DRSKKSVVSDAPVHITASGEPVPIAEESEELDQKTFSICKERMRPVKAALKQLDRPEKGL 1438
Query: 552 SERRDM 557
SER +
Sbjct: 1439 SEREQL 1444
Score = 37 (18.1 bits), Expect = 3.2e-49, Sum P(2) = 3.2e-49
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 497 DAGKLSVLDDLLKRLKAS 514
+ G LSV D+LL + K +
Sbjct: 1003 EPGPLSVGDELLSQFKVA 1020
>RGD|1304733 [details] [associations]
symbol:Ep400 "E1A binding protein p400" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=ISO] [GO:0035267
"NuA4 histone acetyltransferase complex" evidence=ISO] [GO:0043967
"histone H4 acetylation" evidence=ISO] [GO:0043968 "histone H2A
acetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
Pfam:PF00176 SMART:SM00717 RGD:1304733 GO:GO:0005524 GO:GO:0003677
GO:GO:0003682 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR017877 PROSITE:PS50090 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC095390 IPI:IPI00948258
Ensembl:ENSRNOT00000066812 ArrayExpress:D3ZXH2 Uniprot:D3ZXH2
Length = 2908
Score = 509 (184.2 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
Identities = 103/288 (35%), Positives = 165/288 (57%)
Query: 26 STEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAE 85
+T V+ P L G L+ YQ G++WLA LY + +NGILADE GLGKTVQ IAF H+A
Sbjct: 1075 TTAVKFSAPSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLAC 1134
Query: 86 TYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDA 145
WGP L++ + + W+ E++R+ P K + Y G+ +E K RQ W T+
Sbjct: 1135 NEGNWGPHLVVMRSCNILKWELELKRWCPGLKTLSYVGTHRELKAKRQEW------TEPN 1188
Query: 146 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGT 205
+FH+ ITSY+ + F+R+ W+ L++DE Q +K + W+ + + RLLL
Sbjct: 1189 NFHICITSYKQFFRGYTAFSRVHWKCLVVDEMQRVKGMTERHWEAIFKLQSQQRLLLIDV 1248
Query: 206 PIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPF 265
P+ N+ ELW ++HF++P + + S +++ E + + RLH + +PF
Sbjct: 1249 PLHNTFLELWTMVHFLIPGIS------RPYLSFPLKAPNEENQDYYHKMVIRLHRVTQPF 1302
Query: 266 MLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHS 313
+LRR K+DVE +L+ K E ++ C L+SRQK LY + + + ++ + S
Sbjct: 1303 ILRRTKRDVEKQLTRKYEHVLKCRLSSRQKALYEDVILQPRTQEALKS 1350
Score = 303 (111.7 bits), Expect = 6.1e-22, Sum P(2) = 6.1e-22
Identities = 65/208 (31%), Positives = 113/208 (54%)
Query: 142 TKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLL 201
T+ +FH+ ITSY+ + F+R+ W+ L++DE Q +K + W+ + + RLL
Sbjct: 1185 TEPNNFHICITSYKQFFRGYTAFSRVHWKCLVVDEMQRVKGMTERHWEAIFKLQSQQRLL 1244
Query: 202 LSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMI 261
L P+ N+ ELW ++HF++P + + S +++ E + + RLH +
Sbjct: 1245 LIDVPLHNTFLELWTMVHFLIPGIS------RPYLSFPLKAPNEENQDYYHKMVIRLHRV 1298
Query: 262 LKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQL 321
+PF+LRR K+DVE +L+ K E ++ C L+SRQK LY ED+I
Sbjct: 1299 TQPFILRRTKRDVEKQLTRKYEHVLKCRLSSRQKALY---------EDVILQPRTQEALK 1349
Query: 322 SNNIASNLMNLVMQFRKVCNHPELFERR 349
S + S +++++ + +++CNHP L E R
Sbjct: 1350 SGHFVS-VLSVLTRLQRICNHPGLVEPR 1376
Score = 59 (25.8 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
Identities = 29/119 (24%), Positives = 51/119 (42%)
Query: 416 KKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCED 475
++K ED+I S + S +++++ + +++CNHP L E R + A
Sbjct: 1330 RQKALYEDVILQPRTQEALKSGHFVS-VLSVLTRLQRICNHPGLVEPRVPGSSYAAGSLQ 1388
Query: 476 YVIPKLVFEEALLCHKLTLVYDAGKLSVLDDLLKRLKASGHRV-LVYSQMTKMIDLLEE 533
Y L+ +L + D LS+ D + K S H L+Y + L+EE
Sbjct: 1389 YKSASLILR--VLEREFWKETD---LSMFDLIGLENKISRHEAELLYKKKVTR-KLMEE 1441
Score = 44 (20.5 bits), Expect = 5.2e-48, Sum P(2) = 5.2e-48
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 370 QMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSPAL 415
+M++++ + P+ P P+ PQQP + V + Q SP L
Sbjct: 2574 KMQKQKMQLPPQ-PPPPQAQPGPPQQPAQVQVQTAQPPQQQQSPQL 2618
>UNIPROTKB|H9L0N0 [details] [associations]
symbol:H9L0N0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02032856 EMBL:AADN02032857
EMBL:AADN02032858 EMBL:AADN02032859 EMBL:AADN02032860
EMBL:AADN02032861 EMBL:AADN02032862 EMBL:AADN02032863
EMBL:AADN02032864 EMBL:AADN02032865 Ensembl:ENSGALT00000023599
Uniprot:H9L0N0
Length = 1444
Score = 528 (190.9 bits), Expect = 1.8e-49, P = 1.8e-49
Identities = 130/400 (32%), Positives = 217/400 (54%)
Query: 41 LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS 100
L+ YQL G+NWLA+ + +G + ILADEMGLGKT+Q+I+FL ++ ++++GPFL++ P S
Sbjct: 156 LRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHELYGPFLLVVPLS 215
Query: 101 TLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD 160
TL +WQ+E++ + P V Y G R ++R + + TK F++++T+Y++++ D
Sbjct: 216 TLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTH-EWMHPQTKRLKFNILLTTYEILLKD 274
Query: 161 FKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHF 220
+ + W ++ +DEA +K+ S+ +K L+ F +RLL++GTP+QNS+ ELW+LLHF
Sbjct: 275 KSFLGGLNWVFIGIDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHF 334
Query: 221 IMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSD 280
IMP F S ++F E H + + E + LH L+PF+LRR+KKDVE L
Sbjct: 335 IMPEKFSSWEDFEE-------EHGKGR----EFGYASLHKELEPFLLRRVKKDVEKSLPA 383
Query: 281 KIEIMVYCPLTSRQKLLYS-ALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQ--FR 337
K+E ++ +++ QK Y L + K + S GS NI L
Sbjct: 384 KVEQILRMEMSALQKQYYKWILTRNYKA---LSKGSKGSTSGFLNIMMELKKCCNHCYLI 440
Query: 338 KVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPT 397
K + E + +++A L S L + RE G + F + R IL +
Sbjct: 441 KPPDDNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLK 500
Query: 398 YLPVCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSN 437
Y F + ++K +++ + L H ++ GS L++
Sbjct: 501 YRQFPF-----QRLDGSIKGELRKQALDHFNAEGSENLTS 535
Score = 178 (67.7 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 47/115 (40%), Positives = 68/115 (59%)
Query: 436 SNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLV 495
S S +N++M+ +K CNH L + D E Y K +EAL H L+
Sbjct: 416 SKGSTSGFLNIMMELKKCCNHCYLIKPPDDN-------EFY--NK---QEALQ-H---LI 459
Query: 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
+GKL +LD LL RL+ G+RVL++SQM +M+D+L E++ YR++ F RLDGS K
Sbjct: 460 RSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 514
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 521 (188.5 bits), Expect = 2.4e-49, Sum P(2) = 2.4e-49
Identities = 138/439 (31%), Positives = 230/439 (52%)
Query: 10 VEKQRSQQFGSTTPSFSTEV--ERP-------QPGLFRGN----LKHYQLKGMNWLANLY 56
+++ S+ TTP +V +RP QP G+ L+ YQL G+NWLA+ +
Sbjct: 449 IDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSW 508
Query: 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDF 116
+G + ILADEMGLGKT+Q+I+FL ++ + ++GPFL++ P STL +WQ+E++ +
Sbjct: 509 CKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM 568
Query: 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDE 176
V Y G R ++R + + TK F++++T+Y++++ D + + W ++ +DE
Sbjct: 569 NAVVYLGDINSRNMIRTH-EWMHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDE 627
Query: 177 AQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWF 236
A +K+ S+ +K L+ F +RLL++GTP+QNS+ ELW+LLHFIMP F S ++F E
Sbjct: 628 AHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE-- 685
Query: 237 SKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKL 296
H + + E + LH L+PF+LRR+KKDVE L K+E ++ +++ QK
Sbjct: 686 -----EHGKGR----EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQ 736
Query: 297 LYS-ALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQ--FRKVCNHPELFERRDAKA 353
Y L + K + S GS NI L K ++ E + +++A
Sbjct: 737 YYKWILTRNYKA---LSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQ 793
Query: 354 PLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSP 413
L S L + RE G + F + R IL + Y F +
Sbjct: 794 HLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPF-----QRLDG 848
Query: 414 ALKKKIKIEDLIHSSSGGS 432
++K +++ + L H ++ GS
Sbjct: 849 SIKGELRKQALDHFNAEGS 867
Score = 178 (67.7 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 47/115 (40%), Positives = 68/115 (59%)
Query: 436 SNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLV 495
S S +N++M+ +K CNH L + D E Y K +EAL H L+
Sbjct: 753 SKGSTSGFLNIMMELKKCCNHCYLIKPPDNN-------EFY--NK---QEALQ-H---LI 796
Query: 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
+GKL +LD LL RL+ G+RVL++SQM +M+D+L E++ YR++ F RLDGS K
Sbjct: 797 RSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 851
Score = 39 (18.8 bits), Expect = 2.4e-49, Sum P(2) = 2.4e-49
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 497 DAGKLSVLDDLLKRLKAS 514
+AG L+V D+LL + K +
Sbjct: 1017 EAGPLTVGDELLSQFKVA 1034
Score = 37 (18.1 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 405 ESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIAS 441
E + + S +KK K ED S SG Q ++ S
Sbjct: 128 EDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSES 164
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 527 (190.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 139/439 (31%), Positives = 230/439 (52%)
Query: 10 VEKQRSQQFGSTTPSFSTEV--ERP-------QPGLFRGN----LKHYQLKGMNWLANLY 56
+++ S+ TTP +V +RP QP G+ L+ YQL G+NWLA+ +
Sbjct: 433 IDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHESLELRDYQLNGLNWLAHSW 492
Query: 57 DQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDF 116
+G + ILADEMGLGKT+Q+I+FL ++ + ++GPFL++ P STL +WQ+E++ + P
Sbjct: 493 CKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQM 552
Query: 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDE 176
V Y G R ++R + + TK F++++T+Y++++ D + + W ++ +DE
Sbjct: 553 NAVVYLGDITSRNMIRTH-EWMHPQTKRLKFNILLTTYEILLKDKSFLGGLNWAFIGVDE 611
Query: 177 AQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWF 236
A +K+ S+ +K L+ F +RLL++GTP+QNS+ ELW+LLHFIMP F S ++F E
Sbjct: 612 AHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE-- 669
Query: 237 SKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQKL 296
H + + E + LH L+PF+LRR+KKDVE L K+E ++ +++ QK
Sbjct: 670 -----EHGKGR----EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQ 720
Query: 297 LYS-ALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQ--FRKVCNHPELFERRDAKA 353
Y L + K + S GS NI L K + E + +++A
Sbjct: 721 YYKWILTRNYKA---LSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQ 777
Query: 354 PLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFESTQNMVSP 413
L S L + RE G + F + R IL + Y F +
Sbjct: 778 HLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPF-----QRLDG 832
Query: 414 ALKKKIKIEDLIHSSSGGS 432
++K +++ + L H ++ GS
Sbjct: 833 SIKGELRKQALDHFNAEGS 851
Score = 178 (67.7 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 47/115 (40%), Positives = 68/115 (59%)
Query: 436 SNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLV 495
S S +N++M+ +K CNH L + D E Y K +EAL H L+
Sbjct: 737 SKGSTSGFLNIMMELKKCCNHCYLIKPPDDN-------EFY--NK---QEALQ-H---LI 780
Query: 496 YDAGKLSVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSK 550
+GKL +LD LL RL+ G+RVL++SQM +M+D+L E++ YR++ F RLDGS K
Sbjct: 781 RSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 835
Score = 37 (18.1 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 405 ESTQNMVSPALKKKIKIEDLIHSSSG 430
+S + S KKK K ED S SG
Sbjct: 127 DSADDSSSETKKKKHKDEDWQMSGSG 152
>UNIPROTKB|F1NH79 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02061139 EMBL:AADN02061140 EMBL:AADN02061141
EMBL:AADN02061142 EMBL:AADN02061143 IPI:IPI00598956
Ensembl:ENSGALT00000023339 OMA:DGEHEHQ Uniprot:F1NH79
Length = 1895
Score = 524 (189.5 bits), Expect = 7.8e-49, P = 7.8e-49
Identities = 142/385 (36%), Positives = 207/385 (53%)
Query: 12 KQRSQQFGSTTPSFSTEVERP-QP---GLFRGNLKHYQLKGMNWLANLYDQGINGILADE 67
K R + TP+ V+ QP + G L YQL+G+NWL + QG + ILADE
Sbjct: 663 KMRKLERPPETPTVDPTVKYDRQPEYLDVTGGTLHPYQLEGLNWLRFSWAQGTDTILADE 722
Query: 68 MGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQE 127
MGLGKTVQ+ FL + + GPFL+ +P ST+ NW++E E + PD VV Y G
Sbjct: 723 MGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDS 782
Query: 128 RKILRQ----FWDMKNLHTKDAS---------FHVVITSYQLVVSDFKYFNRIKWQYLIL 174
R I+R+ F D K AS FHV++TSY+L+ D I W LI+
Sbjct: 783 RAIIRENEFTFEDNAIRGGKKASRMKKEAAVKFHVLLTSYELITIDMAILGSIDWACLIV 842
Query: 175 DEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNE 234
DEA +K++ S +++L G+S +++LLL+GTP+QN++ EL+ LL+F+ P F + + F E
Sbjct: 843 DEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLE 902
Query: 235 WFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSRQ 294
F+ DI E + +LH +L P MLRR+K DV + K E++V L+ Q
Sbjct: 903 EFA-DIAK---------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQ 952
Query: 295 KLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAP 354
K Y + + E L ++ GG Q+S L+N+VM +K CNHP LF +AP
Sbjct: 953 KKYYKYILTR-NFEAL--NARGGGNQVS------LLNVVMDLKKCCNHPYLFPVAAMEAP 1003
Query: 355 LAMSCEDYHRLYRGRQMEREEGTIL 379
M + +Y G + R G +L
Sbjct: 1004 -KMP----NGMYDGSALIRASGKLL 1023
Score = 204 (76.9 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 49/124 (39%), Positives = 75/124 (60%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N+VM +K CNHP LF P+A + E +P +++ + L+ +GKL
Sbjct: 977 SLLNVVMDLKKCCNHPYLF-------PVA-AMEAPKMPNGMYDGS------ALIRASGKL 1022
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +LK LK GHRVL++SQMTKM+DLLE+F+ + Y++ R+DG + R+ D F
Sbjct: 1023 LLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRF 1082
Query: 559 AVPG 562
PG
Sbjct: 1083 NAPG 1086
>UNIPROTKB|F5GWX5 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AC006064
IPI:IPI00000846 HGNC:HGNC:1919 ChiTaRS:CHD4
ProteinModelPortal:F5GWX5 SMR:F5GWX5 PRIDE:F5GWX5
Ensembl:ENST00000544040 UCSC:uc001qpn.3 ArrayExpress:F5GWX5
Bgee:F5GWX5 Uniprot:F5GWX5
Length = 1905
Score = 524 (189.5 bits), Expect = 7.8e-49, P = 7.8e-49
Identities = 139/386 (36%), Positives = 210/386 (54%)
Query: 8 VEVEK-QRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILAD 66
V++ K +R + + P+ E + G L YQ++G+NWL + QG + ILAD
Sbjct: 685 VKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILAD 744
Query: 67 EMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQ 126
EMGLGKTVQ+ FL + + GPFL+ +P ST+ NW++E E + PD VV Y G
Sbjct: 745 EMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKD 804
Query: 127 ERKILRQ----FWD-------MKNLHTKDAS--FHVVITSYQLVVSDFKYFNRIKWQYLI 173
R I+R+ F D + K+AS FHV++TSY+L+ D I W LI
Sbjct: 805 SRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLI 864
Query: 174 LDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFN 233
+DEA +K++ S +++L G+S +++LLL+GTP+QN++ EL+ LL+F+ P F + + F
Sbjct: 865 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 924
Query: 234 EWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSR 293
E F+ DI E + +LH +L P MLRR+K DV + K E++V L+
Sbjct: 925 EEFA-DIAK---------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPM 974
Query: 294 QKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKA 353
QK Y + + E L ++ GG Q+S L+N+VM +K CNHP LF +A
Sbjct: 975 QKKYYKYILTR-NFEAL--NARGGGNQVS------LLNVVMDLKKCCNHPYLFPVAAMEA 1025
Query: 354 PLAMSCEDYHRLYRGRQMEREEGTIL 379
P M + +Y G + R G +L
Sbjct: 1026 P-KMP----NGMYDGSALIRASGKLL 1046
Score = 204 (76.9 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 49/124 (39%), Positives = 75/124 (60%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N+VM +K CNHP LF P+A + E +P +++ + L+ +GKL
Sbjct: 1000 SLLNVVMDLKKCCNHPYLF-------PVA-AMEAPKMPNGMYDGS------ALIRASGKL 1045
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +LK LK GHRVL++SQMTKM+DLLE+F+ + Y++ R+DG + R+ D F
Sbjct: 1046 LLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRF 1105
Query: 559 AVPG 562
PG
Sbjct: 1106 NAPG 1109
>UNIPROTKB|E2RHA0 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 EMBL:AAEX03015287 RefSeq:XP_867754.2
Ensembl:ENSCAFT00000023774 GeneID:477714 KEGG:cfa:477714
Uniprot:E2RHA0
Length = 1912
Score = 524 (189.5 bits), Expect = 7.9e-49, P = 7.9e-49
Identities = 139/386 (36%), Positives = 210/386 (54%)
Query: 8 VEVEK-QRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILAD 66
V++ K +R + + P+ E + G L YQ++G+NWL + QG + ILAD
Sbjct: 692 VKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILAD 751
Query: 67 EMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQ 126
EMGLGKTVQ+ FL + + GPFL+ +P ST+ NW++E E + PD VV Y G
Sbjct: 752 EMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKD 811
Query: 127 ERKILRQ----FWD-------MKNLHTKDAS--FHVVITSYQLVVSDFKYFNRIKWQYLI 173
R I+R+ F D + K+AS FHV++TSY+L+ D I W LI
Sbjct: 812 SRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLI 871
Query: 174 LDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFN 233
+DEA +K++ S +++L G+S +++LLL+GTP+QN++ EL+ LL+F+ P F + + F
Sbjct: 872 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 931
Query: 234 EWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSR 293
E F+ DI E + +LH +L P MLRR+K DV + K E++V L+
Sbjct: 932 EEFA-DIAK---------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPM 981
Query: 294 QKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKA 353
QK Y + + E L ++ GG Q+S L+N+VM +K CNHP LF +A
Sbjct: 982 QKKYYKYILTR-NFEAL--NARGGGNQVS------LLNVVMDLKKCCNHPYLFPVAAMEA 1032
Query: 354 PLAMSCEDYHRLYRGRQMEREEGTIL 379
P M + +Y G + R G +L
Sbjct: 1033 P-KMP----NGMYDGSALIRASGKLL 1053
Score = 204 (76.9 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 49/124 (39%), Positives = 75/124 (60%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N+VM +K CNHP LF P+A + E +P +++ + L+ +GKL
Sbjct: 1007 SLLNVVMDLKKCCNHPYLF-------PVA-AMEAPKMPNGMYDGS------ALIRASGKL 1052
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +LK LK GHRVL++SQMTKM+DLLE+F+ + Y++ R+DG + R+ D F
Sbjct: 1053 LLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRF 1112
Query: 559 AVPG 562
PG
Sbjct: 1113 NAPG 1116
>UNIPROTKB|Q14839 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 EMBL:X86691
EMBL:AC006064 EMBL:BC038596 IPI:IPI00000846 IPI:IPI00455210
RefSeq:NP_001264.2 UniGene:Hs.162233 PDB:1MM2 PDB:1MM3 PDB:2EE1
PDB:2L5U PDB:2L75 PDBsum:1MM2 PDBsum:1MM3 PDBsum:2EE1 PDBsum:2L5U
PDBsum:2L75 ProteinModelPortal:Q14839 SMR:Q14839 DIP:DIP-31183N
IntAct:Q14839 MINT:MINT-349766 STRING:Q14839 PhosphoSite:Q14839
DMDM:311033360 PaxDb:Q14839 PRIDE:Q14839 DNASU:1108
Ensembl:ENST00000309577 Ensembl:ENST00000357008
Ensembl:ENST00000544484 GeneID:1108 KEGG:hsa:1108 UCSC:uc001qpo.3
UCSC:uc001qpp.3 CTD:1108 GeneCards:GC12M006679 H-InvDB:HIX0201859
HGNC:HGNC:1919 HPA:HPA012008 MIM:603277 neXtProt:NX_Q14839
PharmGKB:PA26455 KO:K11643 OMA:ERMLLCR OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EvolutionaryTrace:Q14839 GenomeRNAi:1108 NextBio:4598
PMAP-CutDB:Q14839 ArrayExpress:Q14839 Bgee:Q14839 CleanEx:HS_CHD4
Genevestigator:Q14839 GermOnline:ENSG00000111642 Uniprot:Q14839
Length = 1912
Score = 524 (189.5 bits), Expect = 7.9e-49, P = 7.9e-49
Identities = 139/386 (36%), Positives = 210/386 (54%)
Query: 8 VEVEK-QRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILAD 66
V++ K +R + + P+ E + G L YQ++G+NWL + QG + ILAD
Sbjct: 692 VKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILAD 751
Query: 67 EMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQ 126
EMGLGKTVQ+ FL + + GPFL+ +P ST+ NW++E E + PD VV Y G
Sbjct: 752 EMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKD 811
Query: 127 ERKILRQ----FWD-------MKNLHTKDAS--FHVVITSYQLVVSDFKYFNRIKWQYLI 173
R I+R+ F D + K+AS FHV++TSY+L+ D I W LI
Sbjct: 812 SRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLI 871
Query: 174 LDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFN 233
+DEA +K++ S +++L G+S +++LLL+GTP+QN++ EL+ LL+F+ P F + + F
Sbjct: 872 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 931
Query: 234 EWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSR 293
E F+ DI E + +LH +L P MLRR+K DV + K E++V L+
Sbjct: 932 EEFA-DIAK---------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPM 981
Query: 294 QKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKA 353
QK Y + + E L ++ GG Q+S L+N+VM +K CNHP LF +A
Sbjct: 982 QKKYYKYILTR-NFEAL--NARGGGNQVS------LLNVVMDLKKCCNHPYLFPVAAMEA 1032
Query: 354 PLAMSCEDYHRLYRGRQMEREEGTIL 379
P M + +Y G + R G +L
Sbjct: 1033 P-KMP----NGMYDGSALIRASGKLL 1053
Score = 204 (76.9 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 49/124 (39%), Positives = 75/124 (60%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N+VM +K CNHP LF P+A + E +P +++ + L+ +GKL
Sbjct: 1007 SLLNVVMDLKKCCNHPYLF-------PVA-AMEAPKMPNGMYDGS------ALIRASGKL 1052
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +LK LK GHRVL++SQMTKM+DLLE+F+ + Y++ R+DG + R+ D F
Sbjct: 1053 LLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRF 1112
Query: 559 AVPG 562
PG
Sbjct: 1113 NAPG 1116
>UNIPROTKB|F1SLR5 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 OMA:ERMLLCR EMBL:CU914489 EMBL:GACC01000070
RefSeq:XP_003126577.3 UniGene:Ssc.25044 Ensembl:ENSSSCT00000000759
GeneID:100515610 KEGG:ssc:100515610 Uniprot:F1SLR5
Length = 1912
Score = 524 (189.5 bits), Expect = 7.9e-49, P = 7.9e-49
Identities = 139/386 (36%), Positives = 210/386 (54%)
Query: 8 VEVEK-QRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILAD 66
V++ K +R + + P+ E + G L YQ++G+NWL + QG + ILAD
Sbjct: 692 VKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILAD 751
Query: 67 EMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQ 126
EMGLGKTVQ+ FL + + GPFL+ +P ST+ NW++E E + PD VV Y G
Sbjct: 752 EMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKD 811
Query: 127 ERKILRQ----FWD-------MKNLHTKDAS--FHVVITSYQLVVSDFKYFNRIKWQYLI 173
R I+R+ F D + K+AS FHV++TSY+L+ D I W LI
Sbjct: 812 SRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLI 871
Query: 174 LDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFN 233
+DEA +K++ S +++L G+S +++LLL+GTP+QN++ EL+ LL+F+ P F + + F
Sbjct: 872 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 931
Query: 234 EWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSR 293
E F+ DI E + +LH +L P MLRR+K DV + K E++V L+
Sbjct: 932 EEFA-DIAK---------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPM 981
Query: 294 QKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKA 353
QK Y + + E L ++ GG Q+S L+N+VM +K CNHP LF +A
Sbjct: 982 QKKYYKYILTR-NFEAL--NARGGGNQVS------LLNVVMDLKKCCNHPYLFPVAAMEA 1032
Query: 354 PLAMSCEDYHRLYRGRQMEREEGTIL 379
P M + +Y G + R G +L
Sbjct: 1033 P-KMP----NGMYDGSALIRASGKLL 1053
Score = 204 (76.9 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 49/124 (39%), Positives = 75/124 (60%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N+VM +K CNHP LF P+A + E +P +++ + L+ +GKL
Sbjct: 1007 SLLNVVMDLKKCCNHPYLF-------PVA-AMEAPKMPNGMYDGS------ALIRASGKL 1052
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +LK LK GHRVL++SQMTKM+DLLE+F+ + Y++ R+DG + R+ D F
Sbjct: 1053 LLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRF 1112
Query: 559 AVPG 562
PG
Sbjct: 1113 NAPG 1116
>MGI|MGI:1344380 [details] [associations]
symbol:Chd4 "chromodomain helicase DNA binding protein 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 MGI:MGI:1344380 Pfam:PF00385
GO:GO:0005524 GO:GO:0005737 GO:GO:0005813 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
GeneTree:ENSGT00560000076896 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
HOVERGEN:HBG005326 CTD:1108 KO:K11643 OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EMBL:BC058578 IPI:IPI00396802 RefSeq:NP_666091.1
UniGene:Mm.333388 ProteinModelPortal:Q6PDQ2 SMR:Q6PDQ2
DIP:DIP-59651N IntAct:Q6PDQ2 STRING:Q6PDQ2 PhosphoSite:Q6PDQ2
PaxDb:Q6PDQ2 PRIDE:Q6PDQ2 Ensembl:ENSMUST00000056889 GeneID:107932
KEGG:mmu:107932 UCSC:uc009dtk.1 NextBio:359735 PMAP-CutDB:Q6PDQ2
Bgee:Q6PDQ2 CleanEx:MM_CHD4 Genevestigator:Q6PDQ2
GermOnline:ENSMUSG00000063870 Uniprot:Q6PDQ2
Length = 1915
Score = 524 (189.5 bits), Expect = 7.9e-49, P = 7.9e-49
Identities = 139/386 (36%), Positives = 210/386 (54%)
Query: 8 VEVEK-QRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILAD 66
V++ K +R + + P+ E + G L YQ++G+NWL + QG + ILAD
Sbjct: 685 VKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILAD 744
Query: 67 EMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQ 126
EMGLGKTVQ+ FL + + GPFL+ +P ST+ NW++E E + PD VV Y G
Sbjct: 745 EMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKD 804
Query: 127 ERKILRQ----FWD-------MKNLHTKDAS--FHVVITSYQLVVSDFKYFNRIKWQYLI 173
R I+R+ F D + K+AS FHV++TSY+L+ D I W LI
Sbjct: 805 SRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLI 864
Query: 174 LDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFN 233
+DEA +K++ S +++L G+S +++LLL+GTP+QN++ EL+ LL+F+ P F + + F
Sbjct: 865 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 924
Query: 234 EWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSR 293
E F+ DI E + +LH +L P MLRR+K DV + K E++V L+
Sbjct: 925 EEFA-DIAK---------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPM 974
Query: 294 QKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKA 353
QK Y + + E L ++ GG Q+S L+N+VM +K CNHP LF +A
Sbjct: 975 QKKYYKYILTR-NFEAL--NARGGGNQVS------LLNVVMDLKKCCNHPYLFPVAAMEA 1025
Query: 354 PLAMSCEDYHRLYRGRQMEREEGTIL 379
P M + +Y G + R G +L
Sbjct: 1026 P-KMP----NGMYDGSALIRASGKLL 1046
Score = 204 (76.9 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 49/124 (39%), Positives = 75/124 (60%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N+VM +K CNHP LF P+A + E +P +++ + L+ +GKL
Sbjct: 1000 SLLNVVMDLKKCCNHPYLF-------PVA-AMEAPKMPNGMYDGS------ALIRASGKL 1045
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +LK LK GHRVL++SQMTKM+DLLE+F+ + Y++ R+DG + R+ D F
Sbjct: 1046 LLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRF 1105
Query: 559 AVPG 562
PG
Sbjct: 1106 NAPG 1109
>UNIPROTKB|E9PU01 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI01016558 PRIDE:E9PU01 Ensembl:ENSRNOT00000055970
ArrayExpress:E9PU01 Uniprot:E9PU01
Length = 1915
Score = 524 (189.5 bits), Expect = 7.9e-49, P = 7.9e-49
Identities = 139/386 (36%), Positives = 210/386 (54%)
Query: 8 VEVEK-QRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGINGILAD 66
V++ K +R + + P+ E + G L YQ++G+NWL + QG + ILAD
Sbjct: 685 VKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILAD 744
Query: 67 EMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQ 126
EMGLGKTVQ+ FL + + GPFL+ +P ST+ NW++E E + PD VV Y G
Sbjct: 745 EMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKD 804
Query: 127 ERKILRQ----FWD-------MKNLHTKDAS--FHVVITSYQLVVSDFKYFNRIKWQYLI 173
R I+R+ F D + K+AS FHV++TSY+L+ D I W LI
Sbjct: 805 SRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLI 864
Query: 174 LDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFN 233
+DEA +K++ S +++L G+S +++LLL+GTP+QN++ EL+ LL+F+ P F + + F
Sbjct: 865 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 924
Query: 234 EWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTSR 293
E F+ DI E + +LH +L P MLRR+K DV + K E++V L+
Sbjct: 925 EEFA-DIAK---------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPM 974
Query: 294 QKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKA 353
QK Y + + E L ++ GG Q+S L+N+VM +K CNHP LF +A
Sbjct: 975 QKKYYKYILTR-NFEAL--NARGGGNQVS------LLNVVMDLKKCCNHPYLFPVAAMEA 1025
Query: 354 PLAMSCEDYHRLYRGRQMEREEGTIL 379
P M + +Y G + R G +L
Sbjct: 1026 P-KMP----NGMYDGSALIRASGKLL 1046
Score = 204 (76.9 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 49/124 (39%), Positives = 75/124 (60%)
Query: 442 NLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKLVFEEALLCHKLTLVYDAGKL 501
+L+N+VM +K CNHP LF P+A + E +P +++ + L+ +GKL
Sbjct: 1000 SLLNVVMDLKKCCNHPYLF-------PVA-AMEAPKMPNGMYDGS------ALIRASGKL 1045
Query: 502 SVLDDLLKRLKASGHRVLVYSQMTKMIDLLEEFMVYRKYRFMRLDGSSKISERR---DMF 558
+L +LK LK GHRVL++SQMTKM+DLLE+F+ + Y++ R+DG + R+ D F
Sbjct: 1046 LLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRF 1105
Query: 559 AVPG 562
PG
Sbjct: 1106 NAPG 1109
WARNING: HSPs involving 289 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.136 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 573 573 0.00080 120 3 11 22 0.49 33
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 539
No. of states in DFA: 620 (66 KB)
Total size of DFA: 337 KB (2169 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 56.87u 0.12s 56.99t Elapsed: 00:00:05
Total cpu time: 56.99u 0.13s 57.12t Elapsed: 00:00:05
Start: Thu Aug 15 12:33:34 2013 End: Thu Aug 15 12:33:39 2013
WARNINGS ISSUED: 2