RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13010
(573 letters)
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 230
Score = 160 bits (404), Expect = 4e-46
Identities = 72/246 (29%), Positives = 128/246 (52%), Gaps = 23/246 (9%)
Query: 33 QPGLFRGNLKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGP 92
+P + NL+ YQ+KG +W+ + G LAD+MGLGKT+Q+IA A+ + P
Sbjct: 5 EPYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAV-FSDAKKENELTP 63
Query: 93 FLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVIT 152
L+I P S L NW++E+ +F P + + + K+ + +++T
Sbjct: 64 SLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKL--------------EDYDIILT 109
Query: 153 SYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMA 212
+Y +++ D + ++W+Y+++DEAQ IK+ + +K + + R+ L+GTPI+N +
Sbjct: 110 TYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVD 168
Query: 213 ELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERHLSRLHMILKPFMLRRIKK 272
+LW+++ F+ P + S+ EF F+ I+ D L I+ PF+LRR K
Sbjct: 169 DLWSIMTFLNPGLLGSYSEFKSKFATPIKKG-------DNMAKEELKAIISPFILRRTKY 221
Query: 273 DVENEL 278
D
Sbjct: 222 DKAIIN 227
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 155 bits (391), Expect = 1e-43
Identities = 58/248 (23%), Positives = 113/248 (45%), Gaps = 14/248 (5%)
Query: 36 LFRGNLKHYQLKGMNWLANLY-----DQGINGILADEMGLGKTVQSIAFLCHIAETYDVW 90
+ L+ +Q +G+ +L + + I+ADEMGLGKT+Q I + + +
Sbjct: 51 VLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC 110
Query: 91 GP----FLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDAS 146
P +++SP+S + NW E+ +++ + +I + + +
Sbjct: 111 KPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIP 170
Query: 147 FHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTP 206
++I SY+ + ++ K +I DE +K+S + + L + + R+L+SGTP
Sbjct: 171 TPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTP 230
Query: 207 IQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTS-----IDERHLSRLHMI 261
IQN + E ++L+HF+ + + EF + F I + S E+ L L I
Sbjct: 231 IQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISI 290
Query: 262 LKPFMLRR 269
+ ++RR
Sbjct: 291 VNRCLIRR 298
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 56.9 bits (136), Expect = 2e-09
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 10/105 (9%)
Query: 272 KDV-ENELSDKIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLM 330
D+ L KIE +V C LT QK LY K+ K + + + I+ + +
Sbjct: 2 SDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQ---------TGKISVSSL 52
Query: 331 NLVMQFRKVCNHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREE 375
+ + +K+CNHP L + E
Sbjct: 53 SSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEP 97
Score = 55.0 bits (131), Expect = 9e-09
Identities = 29/137 (21%), Positives = 62/137 (45%), Gaps = 7/137 (5%)
Query: 422 EDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELFERRDAKAPLAMSCEDYVIPKL 481
+ + + + I+ + ++ + +K+CNHP L + + P+
Sbjct: 30 KLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQN 89
Query: 482 VFEEALLCHKLTLVYDAGKLSVLDDLLKRLKAS-GHRVLVYSQMTKMIDLLEEFMVYRKY 540
+A+ +GK+ VLD +L + + +V++ S T+ +DL E+ R+Y
Sbjct: 90 YSTKAV------EPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRY 143
Query: 541 RFMRLDGSSKISERRDM 557
++RLDG+ I +R +
Sbjct: 144 LYVRLDGTMSIKKRAKI 160
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 51.0 bits (121), Expect = 5e-08
Identities = 28/166 (16%), Positives = 52/166 (31%), Gaps = 31/166 (18%)
Query: 41 LKHYQLKGMNWLANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPAS 100
L+ YQ K + G + G GKT ++A + ++ + + +
Sbjct: 71 LRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINELSTPTLIV-----VPTLA 121
Query: 101 TLHNWQQEMERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD 160
W++ + F ++ K+ V T V+
Sbjct: 122 LAEQWKERLGIFGEEYVGEFSG------------------RIKELKPLTVSTYDSAYVNA 163
Query: 161 FKYFNRIKWQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTP 206
K NR + LI DE + + S ++ RL L+ T
Sbjct: 164 EKLGNR--FMLLIFDEVHHLPAES--YVQIAQMSIAPFRLGLTATF 205
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 244
Score = 45.1 bits (105), Expect = 9e-06
Identities = 28/187 (14%), Positives = 63/187 (33%), Gaps = 12/187 (6%)
Query: 281 KIEIMVYCPLTSRQKLLYSALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVC 340
KIE VYC LT Q +Y A + + + +++ +++ +++
Sbjct: 1 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRK--------GMILSTLLKLKQIV 52
Query: 341 NHPELFERRDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLP 400
+HP L + + + + E ++ I +F + + + ++
Sbjct: 53 DHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTE 112
Query: 401 VCFFESTQNMVSPALKKKIKIEDLIHSSSGGSIQLSNNIASNLMNLVMQFRKVCNHPELF 460
V F + ++ I ++ S I LS +NL R +
Sbjct: 113 VPFLYGELSKK----ERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWN 168
Query: 461 ERRDAKA 467
+ +A
Sbjct: 169 PAVEDQA 175
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 37.7 bits (86), Expect = 8e-04
Identities = 19/157 (12%), Positives = 51/157 (32%), Gaps = 21/157 (13%)
Query: 53 ANLYDQGINGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERF 112
+++ +G+ +L G GKT + + + + +++P + + +E
Sbjct: 1 SHMLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTL--VLAPTRVVLSEMKEAFHG 58
Query: 113 VPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYL 172
+ + + + + L + + W+ +
Sbjct: 59 LDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEP----------------TRVVNWEVI 102
Query: 173 ILDEAQAIKSSSSMRWKLLLGFSCRNR---LLLSGTP 206
I+DEA + +S + N +L++ TP
Sbjct: 103 IMDEAHFLDPASIAARGWAAHRARANESATILMTATP 139
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 37.8 bits (86), Expect = 0.002
Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 10/150 (6%)
Query: 61 NGILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVP 120
N ++ GLGKT+ IA + G L+++P L E R + +
Sbjct: 25 NCLIVLPTGLGKTL--IAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82
Query: 121 YWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 180
E+ + A+ + + ++ DEA
Sbjct: 83 IVALTGEKSPEERSKAWARAKVIVATPQTIENDLL-----AGRISLEDVSLIVFDEAHRA 137
Query: 181 KSSSS---MRWKLLLGFSCRNRLLLSGTPI 207
+ + + + + L+ +P
Sbjct: 138 VGNYAYVFIAREYKRQAKNPLVIGLTASPG 167
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 264
Score = 33.6 bits (76), Expect = 0.047
Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 10/150 (6%)
Query: 63 ILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYW 122
+L ++G GKTV + + E F++ + + ++++ +E F V
Sbjct: 108 LLQGDVGSGKTVVAQLAILDNYEAGFQ-TAFMVPTSILAIQHYRRTVESFSKFNIHVALL 166
Query: 123 GSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKS 182
+ ++ VVI ++ L+ D + N +I+DE +
Sbjct: 167 IGATTPSEKEKIKSG----LRNGQIDVVIGTHALIQEDVHFKNL---GLVIIDEQH--RF 217
Query: 183 SSSMRWKLLLGFSCRNRLLLSGTPIQNSMA 212
R L+ + L++S TPI SMA
Sbjct: 218 GVKQREALMNKGKMVDTLVMSATPIPRSMA 247
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 31.8 bits (71), Expect = 0.17
Identities = 21/152 (13%), Positives = 43/152 (28%), Gaps = 9/152 (5%)
Query: 58 QGINGILADEMGLGK-TVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDF 116
+ + G+GK + L + + F ++
Sbjct: 57 RKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVG 116
Query: 117 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDE 176
+ M+NL F +VIT+ Q + ++ ++ +D+
Sbjct: 117 TENLIGYYHGRIPKREKENFMQNLRN----FKIVITTTQFLSKHYRELGHFD--FIFVDD 170
Query: 177 AQAI--KSSSSMRWKLLLGFSCRNRLLLSGTP 206
AI S + + LLGF +
Sbjct: 171 VDAILKASKNVDKLLHLLGFHYDLKTKSWVGE 202
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
10665]}
Length = 282
Score = 30.6 bits (68), Expect = 0.45
Identities = 19/139 (13%), Positives = 42/139 (30%), Gaps = 13/139 (9%)
Query: 68 MGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTLHNWQQEMERFVPDFKVVPYWGSPQE 127
G+++ A L +I+ + + + +
Sbjct: 137 TSAGRSLI-QALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGA 195
Query: 128 RKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIKSSSSMR 187
K + D VV+ ++Q VV K + ++ ++ DE S+
Sbjct: 196 SKDDKYKNDAP----------VVVGTWQTVVKQPKEWFS-QFGMMMNDECHLAT-GKSIS 243
Query: 188 WKLLLGFSCRNRLLLSGTP 206
+ +C + LSG+
Sbjct: 244 SIISGLNNCMFKFGLSGSL 262
>d1tp6a_ d.17.4.12 (A:) Hypothetical protein PA1314 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 126
Score = 28.6 bits (64), Expect = 0.79
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 109 MERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD 160
M RF DF +V G ++ L + ++ + I L+ S
Sbjct: 31 MARFAEDFSMVTPHGVVLDKTALGEL--FRSKGGTRPGLRIEIDGESLLASG 80
>d1l5oa_ c.39.1.1 (A:) Nicotinate
mononucleotide:5,6-dimethylbenzimidazole
phosphoribosyltransferase (CobT) {Salmonella typhimurium
[TaxId: 90371]}
Length = 346
Score = 29.1 bits (65), Expect = 1.6
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 5/83 (6%)
Query: 1 MDNVRHAVEVEKQRSQQFGSTTPSFSTEVERPQPGLFRGNLKHYQLKGMNWLANLYDQGI 60
+D A + + + + + P + R + L+ + +L +G+
Sbjct: 110 IDVGIDAEPIPGVVNMRVARGCGNIAVG-----PAMSRLQAEALLLEVSRYTCDLAQRGV 164
Query: 61 NGILADEMGLGKTVQSIAFLCHI 83
E+G+ T + A +
Sbjct: 165 TLFGVGELGMANTTPAAAMVSVF 187
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 27.5 bits (60), Expect = 2.1
Identities = 16/150 (10%), Positives = 36/150 (24%), Gaps = 29/150 (19%)
Query: 62 GILADEMGLGKTVQSIAFLCHIAETYDVWGPFLIISPASTL-HNWQQEMERFVPDFKVVP 120
L G GK+ + A L+++P+ + M + +
Sbjct: 11 AHLHAPTGSGKSTKVPAAY------AAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIR 64
Query: 121 YWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 180
+ + +I DE +
Sbjct: 65 TGVRTITTGSPITYSTYGKFLAD----------------GGCSGGA--YDIIICDECHST 106
Query: 181 KSSSSMRWKLLLGFSCRNR----LLLSGTP 206
++S + +L + +L + TP
Sbjct: 107 DATSILGIGTVLDQAETAGARLVVLATATP 136
>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera
frugiperda) [TaxId: 7108]}
Length = 256
Score = 27.8 bits (61), Expect = 3.0
Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 12/121 (9%)
Query: 115 DFKVVPYWGSPQE--RKILRQFWDMKNLHTKDASFHVVITSY----QLVVSDFKYFNRIK 168
FKV + E K ++Q + H+ V + ++ L D Y
Sbjct: 58 GFKVTVFPNLKSEEINKFIQQT--AEMDHSDADCLLVAVLTHGELGMLYAKDTHYKPDNL 115
Query: 169 WQYLILDEAQAIKSSSSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDS 228
W Y D+ + KL +C+ L G + + + + +P D
Sbjct: 116 WYYFTADKCPTLAGKP----KLFFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADF 171
Query: 229 H 229
Sbjct: 172 L 172
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 26.7 bits (59), Expect = 5.9
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 347 ERRDAKAPLAMSCEDYHRLYRGRQMEREEGTILPEFPHVPRDPVILPQQPTYLPVCFFES 406
E+R + PL++ E H L + + + + V + Y+ +
Sbjct: 90 EKRKRRNPLSLPVEKIHPLLKEVLGYKIDHQV----------SVYIVAVLEYISADILKL 139
Query: 407 TQNMVSPALKKKIKIEDL 424
N V +I +D+
Sbjct: 140 AGNYVRNIRHYEITKQDI 157
>d1k28d1 b.106.1.1 (D:4-200) Baseplate structural protein gp27
{Bacteriophage T4 [TaxId: 10665]}
Length = 197
Score = 26.4 bits (58), Expect = 8.1
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 131 LRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRI 167
+ QF+D KN+HTK ++ S RI
Sbjct: 48 MLQFYDSKNIHTKMDGNEIIQISVANANDINNVKTRI 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.408
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,191,326
Number of extensions: 105258
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 25
Length of query: 573
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 483
Effective length of database: 1,171,896
Effective search space: 566025768
Effective search space used: 566025768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.5 bits)